Pregenerated sensors for RAN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029430Ensembl transcript IDs: ENSMUST00000031383.14, ENSMUST00000111343.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GACTGGACCAGCAGAGCACACGGAATGGCTTGCTGTAAATACATCTaGGCAACACAGTTGTGCCGGGATCACACACCTAAGTCTCAACTA | + |
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Preference number: 1 (lower is better) Translates to: DWTSRAHGMACCKYI*ATQLCRDHTPKSQL Trigger: TAGTTGAGACTTAGGTGTGTGATCCCGGCACAACTGTGTTGCTCAGATGTATTTACAGCAAGCCATTCCGTGTGCTCTGCTGGTCCAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR CAA 90 bp | ACAAACACCAACAACTATGTGAAGGTATCCACCCTTCTAGGAACTTaGGTAGACTGGACCAGCAGAGCACACGGAATGGCTTGCTGTAAA | + |
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Preference number: 2 (lower is better) Translates to: TNTNNYVKVSTLLGT*VDWTSRAHGMACCK Trigger: TTTACAGCAAGCCATTCCGTGTGCTCTGCTGGTCCAGTCTACCAAAGTTCCTAGAAGGGTGGATACCTTCACATAGTTGTTGGTGTTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR CCA 90 bp | AAATGTAGTCCATCTCAGAAAACCCTCAAGCTTCCGTCCGTCAACTGCAGTTCTCACTGGATATTGCGATaGGACTGCAGCAGTCTTATC | + |
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Preference number: 2 (lower is better) Translates to: KCSPSQKTLKLPSVNCSSHWILR*DCSSLI Trigger: GATAAGACTGCTGCAGTCCCATCGCAATATCCAGTG...AGAACTGCAGTTGACGGACGGAAGCTTGAGGGTTTTCTGAGATGGACTACATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGTTCTAACTTCTGAAGGCCTAGGTTACAGAAATTGTCAACTGCAATCCTTATTCCCCACTGGATATTaGGATGGGACTGCAGCAGTC | + |
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Preference number: 2 (lower is better) Translates to: AVLTSEGLGYRNCQLQSLFPTGY*DGTAAV Trigger: GACTGCTGCAGTCCCATCGCAATATCCAGTGGGGAA...TAAGGATTGCAGTTGACAATTTCTGTAACCTAGGCCTTCAGAAGTTAGAACTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR GCA 90 bp | TCACCTGATCATAGCATAGCACATACATCAAATTTGAGTCTTGCAATCAGTCTGTTCCCCACTGGATATTaGGATGGGACTGCAGCAGTC | + |
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Preference number: 2 (lower is better) Translates to: SPDHSIAHTSNLSLAISLFPTGY*DGTAAV Trigger: GACTGCTGCAGTCCCATCGCAATATCCAGTGGGGAA...CAGACTGATTGCAAGACTCAAATTTGATGTATGTGCTATGCTATGATCAGGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGTTCTAACTTCTGAAGGCCTAGGTTACAGAAATTGTCAACTGCAATCCTTACACTGGATATTGCGATaGGACTGCAGCAGTCTTATC | + |
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Preference number: 2 (lower is better) Translates to: AVLTSEGLGYRNCQLQSLHWILR*DCSSLI Trigger: GATAAGACTGCTGCAGTCCCATCGCAATATCCAGTG...TAAGGATTGCAGTTGACAATTTCTGTAACCTAGGCCTTCAGAAGTTAGAACTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR TCA 90 bp | TCACCTGATCATAGCATAGCACATACATCAAATTTGAGTCTTGCAATCAGTCTGTGCAGTTCTAACTTCTaGAGGCCTAGGTTACAGAAA | + |
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Preference number: 2 (lower is better) Translates to: SPDHSIAHTSNLSLAISLCSSNF*RPRLQK Trigger: TTTCTGTAACCTAGGCCTTCAGAAGTTAGAACTGCA...CAGACTGATTGCAAGACTCAAATTTGATGTATGTGCTATGCTATGATCAGGTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGTTCTAACTTCTGAAGGCCTAGGTTACAGAAATTGTCAACTGCAATCCTTAATATTGCGATGGGACTaGAGCAGTCTTATCTTTGAA | + |
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Preference number: 2 (lower is better) Translates to: AVLTSEGLGYRNCQLQSLILRWD*SSLIFE Trigger: TTCAAAGATAAGACTGCTGCAGTCCCATCGCAATAT...TAAGGATTGCAGTTGACAATTTCTGTAACCTAGGCCTTCAGAAGTTAGAACTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGTTCTAACTTCTGAAGGCCTAGGTTACAGAAATTGTCAACTGCAATCCTTAAGATATCATCCTAGCTaGGTCACAGACAATCTAAAT | + |
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Preference number: 2 (lower is better) Translates to: AVLTSEGLGYRNCQLQSLRYHPS*VTDNLN Trigger: ATTTAGATTGTCTGTGACTCAGCTAGGATGATATCT...TAAGGATTGCAGTTGACAATTTCTGTAACCTAGGCCTTCAGAAGTTAGAACTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR CAA 90 bp | CTAACACTATCACATCAGAGAAGCCCACCCTACTCCTCAGTGGCAGTAGCCCTATTTCCCCACTGGATATaGCGATGGGACTGCAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: LTLSHQRSPPYSSVAVALFPHWI*RWDCSS Trigger: ACTGCTGCAGTCCCATCGCAATATCCAGTGGGGAAA...TAGGGCTACTGCCACTGAGGAGTAGGGTGGGCTTCTCTGATGTGATAGTGTTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR CAA 90 bp | CTAACACTATCACATCAGAGAAGCCCACCCTACTCCTCAGTGGCAGTAGCCCTACTCTGTAGACTAAGGTaGGGGGCAAACTCAAGAGAT | + |
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Preference number: 3 (lower is better) Translates to: LTLSHQRSPPYSSVAVALLCRLR*GANSRD Trigger: ATCTCTTGAGTTTGCCCCCAACCTTAGTCTACAGAG...TAGGGCTACTGCCACTGAGGAGTAGGGTGGGCTTCTCTGATGTGATAGTGTTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR TCA 72 bp | AGCAGAGCACACGGAATGGCTTGCTGTAAATACATCTaGGCAACACAGTTGTGCCGGGATCACACACCTAAG | + |
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Preference number: 3 (lower is better) Translates to: SRAHGMACCKYI*ATQLCRDHTPK Trigger: CTTAGGTGTGTGATCCCGGCACAACTGTGTTGCTCAGATGTATTTACAGCAAGCCATTCCGTGTGCTCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR CCA 72 bp | GTGAAGGTATCCACCCTTCTAGGAACTTTGGTAGACTaGACCAGCAGAGCACACGGAATGGCTTGCTGTAAA | + |
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Preference number: 3 (lower is better) Translates to: VKVSTLLGTLVD*TSRAHGMACCK Trigger: TTTACAGCAAGCCATTCCGTGTGCTCTGCTGGTCCAGTCTACCAAAGTTCCTAGAAGGGTGGATACCTTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGAGACTACCACTCAATATAGGAGCCAATATTTGAAAGCAGAGGACATCTTATTTCCCCACTGGATATaGCGATGGGACTGCAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: PETTTQYRSQYLKAEDILFPHWI*RWDCSS Trigger: ACTGCTGCAGTCCCATCGCAATATCCAGTGGGGAAA...TAAGATGTCCTCTGCTTTCAAATATTGGCTCCTATATTGAGTGGTAGTCTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR TCA 72 bp | CTCAAGCTTCCGTCCGTCAACTGCAGTTCTAACTTCTaGAGGCCTAGGTTACAGAAATTGTCAACTGCAATC | + |
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Preference number: 3 (lower is better) Translates to: LKLPSVNCSSNF*RPRLQKLSTAI Trigger: GATTGCAGTTGACAATTTCTGTAACCTAGGCCTTCAGAAGTTAGAACTGCAGTTGACGGACGGAAGCTTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR TCA 72 bp | CTTGCAATCAGTCTGCTGAAGCTAGAATGCACAGTATaGGTTCCTTCCACCTTCCCCACTGTATTTAAGTCA | + |
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Preference number: 3 (lower is better) Translates to: LAISLLKLECTV*VPSTFPTVFKS Trigger: TGACTTAAATACAGTGGGGAAGGTGGAAGGAACTCATACTGTGCATTCTAGCTTCAGCAGACTGATTGCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR CAA 90 bp | AAATGTAGTCCATCTCAGAAAACCCTCAAGCTTCCGTCCGTCAACTGCAGTTCTGCAGCAGTCTTATCTTaGAAATTCAGAAAGGAAACA | + |
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Preference number: 3 (lower is better) Translates to: KCSPSQKTLKLPSVNCSSAAVLS*KFRKET Trigger: TGTTTCCTTTCTGAATTTCAAAGATAAGACTGCTGC...AGAACTGCAGTTGACGGACGGAAGCTTGAGGGTTTTCTGAGATGGACTACATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR CAA 90 bp | AAATGTAGTCCATCTCAGAAAACCCTCAAGCTTCCGTCCGTCAACTGCAGTTCTCCTAGGTTACAGAAATaGTCAACTGCAATCCTTAAA | + |
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Preference number: 3 (lower is better) Translates to: KCSPSQKTLKLPSVNCSSPRLQK*STAILK Trigger: TTTAAGGATTGCAGTTGACAATTTCTGTAACCTAGG...AGAACTGCAGTTGACGGACGGAAGCTTGAGGGTTTTCTGAGATGGACTACATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGAGACTACCACTCAATATAGGAGCCAATATTTGAAAGCAGAGGACATCTTACCTAGGTTACAGAAATaGTCAACTGCAATCCTTAAA | + |
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Preference number: 3 (lower is better) Translates to: PETTTQYRSQYLKAEDILPRLQK*STAILK Trigger: TTTAAGGATTGCAGTTGACAATTTCTGTAACCTAGG...TAAGATGTCCTCTGCTTTCAAATATTGGCTCCTATATTGAGTGGTAGTCTCAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CCA 90 bp | CTAACACTATCACATCAGAGAAGCCCACCCTACTCCTCAGTGGCAGTAGCCCTACCCCCGAACTTCTCCTaGCCGGCCGTGTCCCACACG | + |
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Preference number: 4 (lower is better) Translates to: LTLSHQRSPPYSSVAVALPPNFS*PAVSHT Trigger: CGTGTGGGACACGGCCGGCCAGGAGAAGTTCGGGGG...TAGGGCTACTGCCACTGAGGAGTAGGGTGGGCTTCTCTGATGTGATAGTGTTAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR GCA 90 bp | AAATGTAGTCCATCTCAGAAAACCCTCAAGCTTCCGTCCGTCAACTGCAGTTCTAGGTTGTCTTCCCGGTaGCGCCGTCGCCCACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: KCSPSQKTLKLPSVNCSSRLSSR*RRRPPG Trigger: TCCTGGTGGGCGACGGCGGCACCGGGAAGACAACCT...AGAACTGCAGTTGACGGACGGAAGCTTGAGGGTTTTCTGAGATGGACTACATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CCA 90 bp | AAATGTAGTCCATCTCAGAAAACCCTCAAGCTTCCGTCCGTCAACTGCAGTTCTAGGACGAGCTTGAACTaGACCTGCGGCTCTCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KCSPSQKTLKLPSVNCSSRTSLN*TCGSPW Trigger: CCAGGGAGAGCCGCAGGTCCAGTTCAAGCTCGTCCT...AGAACTGCAGTTGACGGACGGAAGCTTGAGGGTTTTCTGAGATGGACTACATTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CCA 90 bp | AAATGTAGTCCATCTCAGAAAACCCTCAAGCTTCCGTCCGTCAACTGCAGTTCTCCTCCACGCCCAGGGTaGCTACATACTTCTTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: KCSPSQKTLKLPSVNCSSPPRPG*LHTSSQ Trigger: TTGAGAAGAAGTATGTAGCCACCCTGGGCGTGGAGG...AGAACTGCAGTTGACGGACGGAAGCTTGAGGGTTTTCTGAGATGGACTACATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CCA 90 bp | TCACCTGATCATAGCATAGCACATACATCAAATTTGAGTCTTGCAATCAGTCTGAGGACGAGCTTGAACTaGACCTGCGGCTCTCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: SPDHSIAHTSNLSLAISLRTSLN*TCGSPW Trigger: CCAGGGAGAGCCGCAGGTCCAGTTCAAGCTCGTCCT...CAGACTGATTGCAAGACTCAAATTTGATGTATGTGCTATGCTATGATCAGGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CCA 90 bp | GCAGTTCTAACTTCTGAAGGCCTAGGTTACAGAAATTGTCAACTGCAATCCTTAGGTCCTCTGTTGGTATaGAAGACGAGCGGGTGCACC | + |
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Preference number: 4 (lower is better) Translates to: AVLTSEGLGYRNCQLQSLGPLLV*KTSGCT Trigger: GGTGCACCCGCTCGTCTTCCATACCAACAGAGGACC...TAAGGATTGCAGTTGACAATTTCTGTAACCTAGGCCTTCAGAAGTTAGAACTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CCA 90 bp | CCTGAGACTACCACTCAATATAGGAGCCAATATTTGAAAGCAGAGGACATCTTACCTCCACGCCCAGGGTaGCTACATACTTCTTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: PETTTQYRSQYLKAEDILPPRPG*LHTSSQ Trigger: TTGAGAAGAAGTATGTAGCCACCCTGGGCGTGGAGG...TAAGATGTCCTCTGCTTTCAAATATTGGCTCCTATATTGAGTGGTAGTCTCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| 3UTR CAA 72 bp | TCTTCACCTGATCATAGCATAGCACATACATCAAATTaGAGTCTTGCAATCAGTCTGCTGAAGCTAGAATGC | + |
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Preference number: 4 (lower is better) Translates to: SSPDHSIAHTSN*SLAISLLKLEC Trigger: GCATTCTAGCTTCAGCAGACTGATTGCAAGACTCAAATTTGATGTATGTGCTATGCTATGATCAGGTGAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CAA 90 bp | CTAACACTATCACATCAGAGAAGCCCACCCTACTCCTCAGTGGCAGTAGCCCTATTGATGGGTCCTCTGTaGGTATGGAAGACGAGCGGG | + |
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Preference number: 5 (lower is better) Translates to: LTLSHQRSPPYSSVAVALLMGPL*VWKTSG Trigger: CCCGCTCGTCTTCCATACCAACAGAGGACCCATCAA...TAGGGCTACTGCCACTGAGGAGTAGGGTGGGCTTCTCTGATGTGATAGTGTTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CAA 90 bp | CCTGAGACTACCACTCAATATAGGAGCCAATATTTGAAAGCAGAGGACATCTTAGGCGCTTCACGAAGGTaGTCTTCCCGGTGCCGCCGT | + |
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Preference number: 5 (lower is better) Translates to: PETTTQYRSQYLKAEDILGASRR*SSRCRR Trigger: ACGGCGGCACCGGGAAGACAACCTTCGTGAAGCGCC...TAAGATGTCCTCTGCTTTCAAATATTGGCTCCTATATTGAGTGGTAGTCTCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CAA 90 bp | TCACCTGATCATAGCATAGCACATACATCAAATTTGAGTCTTGCAATCAGTCTGGGCGCTTCACGAAGGTaGTCTTCCCGGTGCCGCCGT | + |
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Preference number: 5 (lower is better) Translates to: SPDHSIAHTSNLSLAISLGASRR*SSRCRR Trigger: ACGGCGGCACCGGGAAGACAACCTTCGTGAAGCGCC...CAGACTGATTGCAAGACTCAAATTTGATGTATGTGCTATGCTATGATCAGGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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| CDS-3UTR CAA 90 bp | TCACCTGATCATAGCATAGCACATACATCAAATTTGAGTCTTGCAATCAGTCTGTTGATGGGTCCTCTGTaGGTATGGAAGACGAGCGGG | + |
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Preference number: 5 (lower is better) Translates to: SPDHSIAHTSNLSLAISLLMGPL*VWKTSG Trigger: CCCGCTCGTCTTCCATACCAACAGAGGACCCATCAA...CAGACTGATTGCAAGACTCAAATTTGATGTATGTGCTATGCTATGATCAGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031383.14 ENSMUST00000111343.2 |
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