Pregenerated sensors for RAMP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041046Ensembl transcript IDs: ENSMUST00000045374.8
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCACTCCCAGGAATACCCCTCAAGAAGGAGGTTCACGCTCTACCTaGAGGGTAGGTGTCTTTGAAGGGCTAAACAAGCCACAGCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: PTPRNTPQEGGSRST*RVGVFEGLNKPQLQ Trigger: CTGGAGCTGTGGCTTGTTTAGCCCTTCAAAGACACCTACCCTGCAGGTAGAGCGTGAACCTCCTTCTTGAGGGGTATTCCTGGGAGTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CCA 90 bp | GACAGATCACAGAGAGGACAGGCAGGTGGGTCAGTAGGTCACACGTaGCTCCTAATGACCCCAGGCTATCCTTCATGTCTGATAAATGAT | + |
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Preference number: 1 (lower is better) Translates to: DRSQRGQAGGSVGHT*LLMTPGYPSCLIND Trigger: ATCATTTATCAGACATGAAGGATAGCCTGGGGTCATTAGGAGCCACGTGTGACCTACTGACCCACCTGCCTGTCCTCTCTGTGATCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR-3UTR CCA 90 bp | GCATGGCCAGGTAGGGTGTGGCCAAAGCAAACCAGACAGAAGCCGAGTCTGCCACCAGCCTGCCAGGCATaGCCCTCCATCCAGCAGATC | + |
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Preference number: 2 (lower is better) Translates to: AWPGRVWPKQTRQKPSLPPACQA*PSIQQI Trigger: GATCTGCTGGATGGAGGGCCATGCCTGGCAGGCTGG...TGGCAGACTCGGCTTCTGTCTGGTTTGCTTTGGCCACACCCTACCTGGCCATGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGACAGAACCCTTGAGCACACTCAGTGCGCCCCACTCCCAGGAATACCCCTCCCAGATGACCTTGCCTaGCCTCTCTGGCCAAGTGTA | + |
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Preference number: 2 (lower is better) Translates to: ADRTLEHTQCAPLPGIPLPDDLA*PLWPSV Trigger: TACACTTGGCCAGAGAGGGCAGGCAAGGTCATCTGG...GAGGGGTATTCCTGGGAGTGGGGCGCACTGAGTGTGCTCAAGGGTTCTGTCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR-3UTR GCA 90 bp | CACTGGACACAGAATCGTGACAGATCACAGAGAGGACAGGCAGGTGGGTCAGTAAACATTCTCCCAGCCTaGCAGGCATGGCCCTCCATC | + |
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Preference number: 2 (lower is better) Translates to: HWTQNRDRSQRGQAGGSVNILPA*QAWPSI Trigger: GATGGAGGGCCATGCCTGGCAGGCTGGGAGAATGTT...TACTGACCCACCTGCCTGTCCTCTCTGTGATCTGTCACGATTCTGTGTCCAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR-3UTR TCA 90 bp | CACTGGACACAGAATCGTGACAGATCACAGAGAGGACAGGCAGGTGGGTCAGTAGGGCTCAGCAACAGTTaGTTTCCATGCCTGGTCCAC | + |
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Preference number: 2 (lower is better) Translates to: HWTQNRDRSQRGQAGGSVGLSNS*FPCLVH Trigger: GTGGACCAGGCATGGAAATCAACTGTTGCTGAGCCC...TACTGACCCACCTGCCTGTCCTCTCTGTGATCTGTCACGATTCTGTGTCCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR-3UTR CCA 90 bp | AGGGTAGGTGTCTTTGAAGGGCTAAACAAGCCACAGCTCCAGCCCACACTGGACGTTGATTTCCATGCCTaGTCCACAAACTTGGGATTT | + |
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Preference number: 2 (lower is better) Translates to: RVGVFEGLNKPQLQPTLDVDFHA*STNLGF Trigger: AAATCCCAAGTTTGTGGACCAGGCATGGAAATCAAC...GTCCAGTGTGGGCTGGAGCTGTGGCTTGTTTAGCCCTTCAAAGACACCTACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR-3UTR TCA 90 bp | CACTGGACACAGAATCGTGACAGATCACAGAGAGGACAGGCAGGTGGGTCAGTATTCATGTCTGATAAATaGTGTGCTCAGTCTCTTGAA | + |
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Preference number: 2 (lower is better) Translates to: HWTQNRDRSQRGQAGGSVFMSDK*CAQSLE Trigger: TTCAAGAGACTGAGCACATCATTTATCAGACATGAA...TACTGACCCACCTGCCTGTCCTCTCTGTGATCTGTCACGATTCTGTGTCCAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CAA 90 bp | GCTCAGCAACAGTTGATTTCCATGCCTGGTCCACAAACTTGGGATTaGTCACTTTCTTCCACTAGCCCAAGAAAGAGCAAAGTATGGACA | + |
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Preference number: 2 (lower is better) Translates to: AQQQLISMPGPQTWD*SLSSTSPRKSKVWT Trigger: TGTCCATACTTTGCTCTTTCTTGGGCTAGTGGAAGAAAGTGACAAATCCCAAGTTTGTGGACCAGGCATGGAAATCAACTGTTGCTGAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR-3UTR CAA 90 bp | CAGGCAGGTGGGTCAGTAGGTCACACGTGGCTCCTAATGACCCCAGGCTATCCTCTGGTCAGGAGGACTTaGGCATGGCCAGGTAGGGTG | + |
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Preference number: 3 (lower is better) Translates to: QAGGSVGHTWLLMTPGYPLVRRT*AWPGRV Trigger: CACCCTACCTGGCCATGCCAAAGTCCTCCTGACCAG...AGGATAGCCTGGGGTCATTAGGAGCCACGTGTGACCTACTGACCCACCTGCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CCA 72 bp | AAGGGCCACACCAGCCTGGTCAGGAGGACTTTGGCATaGCCAGGTAGGGTGTGGCCAAAGCAAACCAGACAG | + |
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Preference number: 3 (lower is better) Translates to: KGHTSLVRRTLA*PGRVWPKQTRQ Trigger: CTGTCTGGTTTGCTTTGGCCACACCCTACCTGGCCATGCCAAAGTCCTCCTGACCAGGCTGGTGTGGCCCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CCA 72 bp | ACAGCAAGGGCCACACCAGCCTGGTCAGGAGGACTTTaGCATGGCCAGGTAGGGTGTGGCCAAAGCAAACCA | + |
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Preference number: 3 (lower is better) Translates to: TARATPAWSGGL*HGQVGCGQSKP Trigger: TGGTTTGCTTTGGCCACACCCTACCTGGCCATGCCAAAGTCCTCCTGACCAGGCTGGTGTGGCCCTTGCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CCA 72 bp | CGTCCACATCTTCCAGATGACCTTGCCTGCCCTCTCTaGCCAAGTGTAGCAGGGGTCAGGGTCAGGACTAGA | + |
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Preference number: 3 (lower is better) Translates to: RPHLPDDLACPL*PSVAGVRVRTR Trigger: TCTAGTCCTGACCCTGACCCCTGCTACACTTGGCCAGAGAGGGCAGGCAAGGTCATCTGGAAGATGTGGACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR GCA 72 bp | CTGACATCAGCAGACAGAACCCTTGAGCACACTCAGTaGGCCCCACTCCCAGGAATACCCCTCAAGAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: LTSADRTLEHTQ*APLPGIPLKKE Trigger: CTCCTTCTTGAGGGGTATTCCTGGGAGTGGGGCGCACTGAGTGTGCTCAAGGGTTCTGTCTGCTGATGTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CCA 72 bp | CAGAGAGGACAGGCAGGTGGGTCAGTAGGTCACACGTaGCTCCTAATGACCCCAGGCTATCCTTCATGTCTG | + |
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Preference number: 3 (lower is better) Translates to: QRGQAGGSVGHT*LLMTPGYPSCL Trigger: CAGACATGAAGGATAGCCTGGGGTCATTAGGAGCCACGTGTGACCTACTGACCCACCTGCCTGTCCTCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR-3UTR CAA 90 bp | AGGGTAGGTGTCTTTGAAGGGCTAAACAAGCCACAGCTCCAGCCCACACTGGACATCTTCCAGATGACCTaGCCTGCCCTCTCTGGCCAA | + |
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Preference number: 3 (lower is better) Translates to: RVGVFEGLNKPQLQPTLDIFQMT*PALSGQ Trigger: TTGGCCAGAGAGGGCAGGCAAGGTCATCTGGAAGAT...GTCCAGTGTGGGCTGGAGCTGTGGCTTGTTTAGCCCTTCAAAGACACCTACCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR TCA 72 bp | AGGAGGTTCACGCTCTACCTGCAGGGTAGGTGTCTTTaGAGGGCTAAACAAGCCACAGCTCCAGCCCACACT | + |
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Preference number: 3 (lower is better) Translates to: RRFTLYLQGRCL*RAKQATAPAHT Trigger: AGTGTGGGCTGGAGCTGTGGCTTGTTTAGCCCTTCAAAGACACCTACCCTGCAGGTAGAGCGTGAACCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR-3UTR CAA 90 bp | CACTGGACACAGAATCGTGACAGATCACAGAGAGGACAGGCAGGTGGGTCAGTAGCCTGGTCCACAAACTaGGGATTTGTCACTTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: HWTQNRDRSQRGQAGGSVAWSTN*GFVTFF Trigger: GAAGAAAGTGACAAATCCCAAGTTTGTGGACCAGGC...TACTGACCCACCTGCCTGTCCTCTCTGTGATCTGTCACGATTCTGTGTCCAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CCA 72 bp | CAGCAACAGTTGATTTCCATGCCTGGTCCACAAACTTaGGATTTGTCACTTTCTTCCACTAGCCCAAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: QQQLISMPGPQT*DLSLSSTSPRK Trigger: CTTTCTTGGGCTAGTGGAAGAAAGTGACAAATCCCAAGTTTGTGGACCAGGCATGGAAATCAACTGTTGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR GCA 90 bp | CCAGCAGGCGGCAGGCTAGACAGCAAGGGCCACACCAGCCTGGTCAGGAGGACTAACAGTGGAAGAAGGTaGAGCCGCTGTGCTGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: PAGGRLDSKGHTSLVRRTNSGRR*SRCAGV Trigger: GACCCCAGCACAGCGGCTGCACCTTCTTCCACTGTT...AGTCCTCCTGACCAGGCTGGTGTGGCCCTTGCTGTCTAGCCTGCCGCCTGCTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR CCA 90 bp | GAACCGAGCCTGGGGAGCGGGGCTCAGCAACAGTTGATTTCCATGCCTGGTCCACCAGTGATGAAGCTCTaGGCCAGCGGGTTGGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: EPSLGSGAQQQLISMPGPPVMKL*ASGLGQ Trigger: CTGGCCCAACCCGCTGGCCCAGAGCTTCATCACTGG...TGGACCAGGCATGGAAATCAACTGTTGCTGAGCCCCGCTCCCCAGGCTCGGTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR TCA 90 bp | ACAGCAAGGGCCACACCAGCCTGGTCAGGAGGACTTTGGCATGGCCAGGTAGGGGCCAGTAGCAGCCCATaGTGTTGGTCTCCATCTCGG | + |
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Preference number: 4 (lower is better) Translates to: TARATPAWSGGLWHGQVGASSSP*CWSPSR Trigger: CCGAGATGGAGACCAACATCATGGGCTGCTACTGGC...CCCTACCTGGCCATGCCAAAGTCCTCCTGACCAGGCTGGTGTGGCCCTTGCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CAA 72 bp | GACAGCAAGGGCCACACCAGCCTGGTCAGGAGGACTTaGGCATGGCCAGGTAGGGTGTGGCCAAAGCAAACC | + |
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Preference number: 4 (lower is better) Translates to: DSKGHTSLVRRT*AWPGRVWPKQT Trigger: GGTTTGCTTTGGCCACACCCTACCTGGCCATGCCAAAGTCCTCCTGACCAGGCTGGTGTGGCCCTTGCTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR GCA 90 bp | ACTAGAAATGGGTCAGGACCTGGGGCGGGGTTCAGGCTGAGCAAGACTCTGCCAGATCAGTGTGCTTGCTaGGCCACACCACCAGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: TRNGSGPGAGFRLSKTLPDQCAC*ATPPGQ Trigger: CTGGCCTGGTGGTGTGGCGCAGCAAGCACACTGATC...TGGCAGAGTCTTGCTCAGCCTGAACCCCGCCCCAGGTCCTGACCCATTTCTAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR GCA 90 bp | GAACCGAGCCTGGGGAGCGGGGCTCAGCAACAGTTGATTTCCATGCCTGGTCCAGGGTCCTGTCCACCGTaGAGTTGGAAAAGAACTGCC | + |
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Preference number: 4 (lower is better) Translates to: EPSLGSGAQQQLISMPGPGSCPP*SWKRTA Trigger: GGCAGTTCTTTTCCAACTGCACGGTGGACAGGACCC...TGGACCAGGCATGGAAATCAACTGTTGCTGAGCCCCGCTCCCCAGGCTCGGTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR CCA 90 bp | GCAAGGGCCACACCAGCCTGGTCAGGAGGACTTTGGCATGGCCAGGTAGGGTGTAGGAACCGCGATCAGTaGGATGAGTACTTCATCCGG | + |
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Preference number: 4 (lower is better) Translates to: ARATPAWSGGLWHGQVGCRNRDQ*DEYFIR Trigger: CCGGATGAAGTACTCATCCCACTGATCGCGGTTCCT...ACACCCTACCTGGCCATGCCAAAGTCCTCCTGACCAGGCTGGTGTGGCCCTTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CAA 72 bp | AGGGAACCGAGCCTGGGGAGCGGGGCTCAGCAACAGTaGATTTCCATGCCTGGTCCACAAACTTGGGATTTG | + |
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Preference number: 4 (lower is better) Translates to: REPSLGSGAQQQ*ISMPGPQTWDL Trigger: CAAATCCCAAGTTTGTGGACCAGGCATGGAAATCAACTGTTGCTGAGCCCCGCTCCCCAGGCTCGGTTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR GCA 90 bp | CTAGACAGCAAGGGCCACACCAGCCTGGTCAGGAGGACTTTGGCATGGCCAGGTCAGTTGGAAAAGAACTaGCTGTGGATTCCAGTGATG | + |
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Preference number: 4 (lower is better) Translates to: LDSKGHTSLVRRTLAWPGQLEKN*LWIPVM Trigger: CATCACTGGAATCCACAGGCAGTTCTTTTCCAACTG...ACCTGGCCATGCCAAAGTCCTCCTGACCAGGCTGGTGTGGCCCTTGCTGTCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR TCA 90 bp | CCAGGTAGGGTGTGGCCAAAGCAAACCAGACAGAAGCCGAGTCTGCCAGCTCTCTTTCATAATACACGATaGACTCCGACAGGTTGCACC | + |
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Preference number: 4 (lower is better) Translates to: PGRVWPKQTRQKPSLPALFHNTR*TPTGCT Trigger: GGTGCAACCTGTCGGAGTTCATCGTGTATTATGAAA...GAGAGCTGGCAGACTCGGCTTCTGTCTGGTTTGCTTTGGCCACACCCTACCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR CCA 90 bp | CACTGGACACAGAATCGTGACAGATCACAGAGAGGACAGGCAGGTGGGTCAGTAAAGCAGCAACAACAGTaGAAGAAGGTGCAGCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: HWTQNRDRSQRGQAGGSVKQQQQ*KKVQPL Trigger: CAGCGGCTGCACCTTCTTCCACTGTTGTTGCTGCTT...TACTGACCCACCTGCCTGTCCTCTCTGTGATCTGTCACGATTCTGTGTCCAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR CCA 90 bp | CCATGCCTGGTCCACAAACTTGGGATTTGTCACTTTCTTCCACTAGCCCAAGAAGAAAAGAACTGCCTGTaGATTCCAGTGATGAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: PCLVHKLGICHFLPLAQEEKNCL*IPVMKL Trigger: GAGCTTCATCACTGGAATCCACAGGCAGTTCTTTTC...TTCTTGGGCTAGTGGAAGAAAGTGACAAATCCCAAGTTTGTGGACCAGGCATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| 3UTR CAA 72 bp | CAGTTGATTTCCATGCCTGGTCCACAAACTTGGGATTaGTCACTTTCTTCCACTAGCCCAAGAAAGAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: QLISMPGPQTWD*SLSSTSPRKSK Trigger: TTTGCTCTTTCTTGGGCTAGTGGAAGAAAGTGACAAATCCCAAGTTTGTGGACCAGGCATGGAAATCAACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR CAA 90 bp | GCAGACAGAACCCTTGAGCACACTCAGTGCGCCCCACTCCCAGGAATACCCCTCAGCCGATCAGTGTGCTaGCTGCGCCACACCACCAGG | + |
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Preference number: 5 (lower is better) Translates to: ADRTLEHTQCAPLPGIPLSRSVC*LRHTTR Trigger: CCTGGTGGTGTGGCGCAGCAAGCACACTGATCGGCT...GAGGGGTATTCCTGGGAGTGGGGCGCACTGAGTGTGCTCAAGGGTTCTGTCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS GCA 90 bp | GGGTCTTCCCAGTGGGTCCTGTCCACCGTGCAGTTGGAAAAGAACTaGCTGTGGATTCCAGTGATGAAGCTCTGGGCCAGCGGGTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: GSSQWVLSTVQLEKN*LWIPVMKLWASGLG Trigger: GCCCAACCCGCTGGCCCAGAGCTTCATCACTGGAATCCACAGGCAGTTCTTTTCCAACTGCACGGTGGACAGGACCCACTGGGAAGACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS GCA 90 bp | AGGCTTTCCCACAGCGAGGCAGCCTCTCCAGCATCCCTGTCTCGTTaGAGCCGCATACCTGGGCACACTCACCACAAAGCAGCAACAACA | + |
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Preference number: 5 (lower is better) Translates to: RLSHSEAASPASLSR*SRIPGHTHHKAATT Trigger: TGTTGTTGCTGCTTTGTGGTGAGTGTGCCCAGGTATGCGGCTGCAACGAGACAGGGATGCTGGAGAGGCTGCCTCGCTGTGGGAAAGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS CCA 90 bp | CGAGGCAGCCTCTCCAGCATCCCTGTCTCGTTGCAGCCGCATACCTaGGCACACTCACCACAAAGCAGCAACAACAGTGGAAGAAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: RGSLSSIPVSLQPHT*AHSPQSSNNSGRRC Trigger: GCACCTTCTTCCACTGTTGTTGCTGCTTTGTGGTGAGTGTGCCCAGGTATGCGGCTGCAACGAGACAGGGATGCTGGAGAGGCTGCCTCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS GCA 90 bp | ACGATGAACTCCGACAGGTTGCACCACTTCCAGACAGCCACCTTCTaGATCATGTCAGCGAAGGCTTTCCCACAGCGAGGCAGCCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: TMNSDRLHHFQTATF*IMSAKAFPQRGSLS Trigger: GGAGAGGCTGCCTCGCTGTGGGAAAGCCTTCGCTGACATGATGCAGAAGGTGGCTGTCTGGAAGTGGTGCAACCTGTCGGAGTTCATCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR CAA 90 bp | GCATGGCCAGGTAGGGTGTGGCCAAAGCAAACCAGACAGAAGCCGAGTCTGCCACTGTCCACCGTGCAGTaGGAAAAGAACTGCCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: AWPGRVWPKQTRQKPSLPLSTVQ*EKNCLW Trigger: CCACAGGCAGTTCTTTTCCAACTGCACGGTGGACAG...TGGCAGACTCGGCTTCTGTCTGGTTTGCTTTGGCCACACCCTACCTGGCCATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS-3UTR CAA 90 bp | AAGCAAACCAGACAGAAGCCGAGTCTGCCAGCTCTCAGAGCTCTGAGCAACATTATGAACTCCGACAGGTaGCACCACTTCCAGACAGCC | + |
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Preference number: 5 (lower is better) Translates to: KQTRQKPSLPALRALSNIMNSDR*HHFQTA Trigger: GGCTGTCTGGAAGTGGTGCAACCTGTCGGAGTTCAT...AATGTTGCTCAGAGCTCTGAGAGCTGGCAGACTCGGCTTCTGTCTGGTTTGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS CAA 72 bp | CCACAGCGAGGCAGCCTCTCCAGCATCCCTGTCTCGTaGCAGCCGCATACCTGGGCACACTCACCACAAAGC | + |
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Preference number: 6 (lower is better) Translates to: PQRGSLSSIPVS*QPHTWAHSPQS Trigger: GCTTTGTGGTGAGTGTGCCCAGGTATGCGGCTGCAACGAGACAGGGATGCTGGAGAGGCTGCCTCGCTGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS GCA 72 bp | CACAGCGAGGCAGCCTCTCCAGCATCCCTGTCTCGTTaGAGCCGCATACCTGGGCACACTCACCACAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: HSEAASPASLSR*SRIPGHTHHKA Trigger: TGCTTTGTGGTGAGTGTGCCCAGGTATGCGGCTGCAACGAGACAGGGATGCTGGAGAGGCTGCCTCGCTGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS CAA 90 bp | AAGGCTTTCCCACAGCGAGGCAGCCTCTCCAGCATCCCTGTCTCGTaGCAGCCGCATACCTGGGCACACTCACCACAAAGCAGCAACAAC | + |
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Preference number: 6 (lower is better) Translates to: KAFPQRGSLSSIPVS*QPHTWAHSPQSSNN Trigger: GTTGTTGCTGCTTTGTGGTGAGTGTGCCCAGGTATGCGGCTGCAACGAGACAGGGATGCTGGAGAGGCTGCCTCGCTGTGGGAAAGCCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS GCA 72 bp | CAGTGGGTCCTGTCCACCGTGCAGTTGGAAAAGAACTaGCTGTGGATTCCAGTGATGAAGCTCTGGGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: QWVLSTVQLEKN*LWIPVMKLWAS Trigger: GCTGGCCCAGAGCTTCATCACTGGAATCCACAGGCAGTTCTTTTCCAACTGCACGGTGGACAGGACCCACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS CCA 72 bp | CTCTCCAGCATCCCTGTCTCGTTGCAGCCGCATACCTaGGCACACTCACCACAAAGCAGCAACAACAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: LSSIPVSLQPHT*AHSPQSSNNSG Trigger: TCCACTGTTGTTGCTGCTTTGTGGTGAGTGTGCCCAGGTATGCGGCTGCAACGAGACAGGGATGCTGGAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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| CDS CCA 72 bp | TACCTGGGCACACTCACCACAAAGCAGCAACAACAGTaGAAGAAGGTGCAGCCGCTGTGCTGGGGTCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: YLGTLTTKQQQQ*KKVQPLCWGLH Trigger: ATGAAGACCCCAGCACAGCGGCTGCACCTTCTTCCACTGTTGTTGCTGCTTTGTGGTGAGTGTGCCCAGGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045374.8 |
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