Pregenerated sensors for RAMP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001240Ensembl transcript IDs: ENSMUST00000107282.4, ENSMUST00000122006.8, ENSMUST00000128260.9, ENSMUST00000129680.8, ENSMUST00000149585.8, ENSMUST00000151830.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GATGAGGCAGATGGGGGCTATGATCATGGCCAGGAGCACATCCTCTaGGGGATCAGAGAAGGTGGGCTGCACCAGGGAGCAGTTCGCAAA | + |
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Preference number: 1 (lower is better) Translates to: DEADGGYDHGQEHIL*GIREGGLHQGAVRK Trigger: TTTGCGAACTGCTCCCTGGTGCAGCCCACCTTCTCTGATCCCCCAGAGGATGTGCTCCTGGCCATGATCATAGCCCCCATCTGCCTCATC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR GCA 90 bp | GTGTCCACGTTCGGCTGTAACGTAAAGAAGGGCGGGAAGCGGTACTaGCACGGCCACTCGAAACTCATCGCCATCGTAGTAGCCCAGAAA | + |
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Preference number: 1 (lower is better) Translates to: VSTFGCNVKKGGKRY*HGHSKLIAIVVAQK Trigger: TTTCTGGGCTACTACGATGGCGATGAGTTTCGAGTGGCCGTGGCAGTACCGCTTCCCGCCCTTCTTTACGTTACAGCCGAACGTGGACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR CCA 90 bp | GGAAGTTTCCGCTGTAGCTTGACGTTGTTGAAAAGCGGGCTCTCCTaGGCTTCCATCACCGTCATGCTGGACTGTTTGTGCAGGCGGCAG | + |
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Preference number: 1 (lower is better) Translates to: GSFRCSLTLLKSGLS*ASITVMLDCLCRRQ Trigger: CTGCCGCCTGCACAAACAGTCCAGCATGACGGTGATGGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR TCA 90 bp | GAGAAGGTGGGCTGCACCAGGGAGCAGTTCGCAAAGTGTATCAGGTaGGCCTCAAGGATGATGTTTTCTGCCAAGGGATTTGGGAAGCCC | + |
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Preference number: 1 (lower is better) Translates to: EKVGCTREQFAKCIR*ASRMMFSAKGFGKP Trigger: GGGCTTCCCAAATCCCTTGGCAGAAAACATCATCCTTGAGGCTCACCTGATACACTTTGCGAACTGCTCCCTGGTGCAGCCCACCTTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR CCA 90 bp | TGTCTGCATTGTATTCCAAGCAGTTCTGCAGGTCGCTGTAATGCCTaGGAAGCAGTAGGGGGTTTGAGTGAGGGAATGGATGGGCACAGG | + |
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Preference number: 1 (lower is better) Translates to: CLHCIPSSSAGRCNA*EAVGGLSEGMDGHR Trigger: CCTGTGCCCATCCATTCCCTCACTCAAACCCCCTACTGCTTCCCAGGCATTACAGCGACCTGCAGAACTGCTTGGAATACAATGCAGACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| 3UTR CCA 90 bp | ACCAGCAAGGTAGGACATGTGTTTCGTAGTCTTCCATCTTCCCTGTaGGGACATAGGCTTCACAAAGACCACACCCCTGACCTTCCCTCC | + |
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Preference number: 1 (lower is better) Translates to: TSKVGHVFRSLPSSL*GHRLHKDHTPDLPS Trigger: GGAGGGAAGGTCAGGGGTGTGGTCTTTGTGAAGCCTATGTCCCCACAGGGAAGATGGAAGACTACGAAACACATGTCCTACCTTGCTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149585.8 |
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| 3UTR TCA 90 bp | GCACCAGGGAGCAGTTCGCAAAGTGTATCAGGTGAGCCTCAAGGATaGTGTTTTCTGCCAAGGGATTTGGGAAGCCCAGCCCAAACTTGT | + |
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Preference number: 1 (lower is better) Translates to: APGSSSQSVSGEPQG*CFLPRDLGSPAQTC Trigger: ACAAGTTTGGGCTGGGCTTCCCAAATCCCTTGGCAGAAAACATCATCCTTGAGGCTCACCTGATACACTTTGCGAACTGCTCCCTGGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR CCA 90 bp | GGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTaGGCTTACTCTATCCCAGGGACAGAAATAAAGGGTTATGTGGGA | + |
|
Preference number: 1 (lower is better) Translates to: GKEVGQETHPFSVAL*AYSIPGTEIKGYVG Trigger: TCCCACATAACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTACCTCCTTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR GCA 90 bp | TCCCTCCAAGCCTTCCGATCCAGGTATTTCCAAAGTACAGTCCTCTaGCTTCAGAGAAGGGAATCCCCTTTGAAAAGTTCCCTAGCAGGA | + |
|
Preference number: 1 (lower is better) Translates to: SLQAFRSRYFQSTVL*LQRRESPLKSSLAG Trigger: TCCTGCTAGGGAACTTTTCAAAGGGGATTCCCTTCTCTGAAGGCAGAGGACTGTACTTTGGAAATACCTGGATCGGAAGGCTTGGAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149585.8 |
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| 3UTR CCA 90 bp | GTGTATCAGGTGAGCCTCAAGGATGATGTTTTCTGCCAAGGGATTTaGGAAGCCCAGCCCAAACTTGTCTGCATTGTATTCCAAGCAGTT | + |
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Preference number: 1 (lower is better) Translates to: VYQVSLKDDVFCQGI*EAQPKLVCIVFQAV Trigger: AACTGCTTGGAATACAATGCAGACAAGTTTGGGCTGGGCTTCCCAAATCCCTTGGCAGAAAACATCATCCTTGAGGCTCACCTGATACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR-3UTR GCA 90 bp | GCTCTTGCTGTAGGGCCTGCAGAGCGCGCAGCAGGGTCGCCTCGTCCAGCCCATGGCGGGAAGCGGTACTaGCACGGCCACTCGAAACTC | + |
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Preference number: 2 (lower is better) Translates to: ALAVGPAERAAGSPRPAHGGKRY*HGHSKL Trigger: GAGTTTCGAGTGGCCGTGGCAGTACCGCTTCCCGCC...ATGGGCTGGACGAGGCGACCCTGCTGCGCGCTCTGCAGGCCCTACAGCAAGAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR-3UTR GCA 90 bp | GGACAGTATAGGATGGGAAAGGAGGTAGGGCAAGAAACGCATCCTTTCTCCGTGCACCAGGCGGCCAGCTaGTTCTGCCGGGTGTCCACG | + |
|
Preference number: 2 (lower is better) Translates to: GQYRMGKEVGQETHPFSVHQAAS*FCRVST Trigger: CGTGGACACCCGGCAGAAGCAGCTGGCCGCCTGGTG...CACGGAGAAAGGATGCGTTTCTTGCCCTACCTCCTTTCCCATCCTATACTGTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR CAA 90 bp | AGCAGTTCTGCAGGTCGCTGTAATGCCTGGGAAGCAGTAGGGGGTTaGAGTGAGGGAATGGATGGGCACAGGGAGAAGGATGTTCCCGCC | + |
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Preference number: 2 (lower is better) Translates to: SSSAGRCNAWEAVGG*SEGMDGHREKDVPA Trigger: GGCGGGAACATCCTTCTCCCTGTGCCCATCCATTCCCTCACTCAAACCCCCTACTGCTTCCCAGGCATTACAGCGACCTGCAGAACTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| 3UTR-3UTR CCA 90 bp | GAAATGGACCCTAGGCCTGGGCATCGCTGTCTTTACTCCTCCACACCACAAGAGCAGGAGCACATCCTCTaGGGGATCAGAGAAGGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: EMDPRPGHRCLYSSTPQEQEHIL*GIREGG Trigger: CCCACCTTCTCTGATCCCCCAGAGGATGTGCTCCTG...CTCTTGTGGTGTGGAGGAGTAAAGACAGCGATGCCCAGGCCTAGGGTCCATTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR-3UTR TCA 90 bp | AGTTCTGCAGGTCGCTGTAATGCCTGGGAAGCAGTAGGGGGTTTGAGTGAGGGAGTCCAACTCCTGGCCTaGGCCATCCATCCTTCAACA | + |
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Preference number: 2 (lower is better) Translates to: SSAGRCNAWEAVGGLSEGVQLLA*AIHPST Trigger: TGTTGAAGGATGGATGGCTCAGGCCAGGAGTTGGAC...TCCCTCACTCAAACCCCCTACTGCTTCCCAGGCATTACAGCGACCTGCAGAACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| 3UTR-3UTR CCA 90 bp | ATCATGGCCAGGAGCACATCCTCTGGGGGATCAGAGAAGGTGGGCTGCACCAGGCTTCCATCTTCCCTGTaGGGACATAGGCTTCACAAA | + |
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Preference number: 2 (lower is better) Translates to: IMARSTSSGGSEKVGCTRLPSSL*GHRLHK Trigger: TTTGTGAAGCCTATGTCCCCACAGGGAAGATGGAAG...CCTGGTGCAGCCCACCTTCTCTGATCCCCCAGAGGATGTGCTCCTGGCCATGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149585.8 |
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| 3UTR-3UTR TCA 90 bp | TCGCTGTCTTTACTCCTCCACACCACAAGAGTAACAAGGAACGGGATGAGGCAGAGTAGGGGGTTTGAGTaGGGGAATGGATGGGCACAG | + |
|
Preference number: 2 (lower is better) Translates to: SLSLLLHTTRVTRNGMRQSRGFE*GNGWAQ Trigger: CTGTGCCCATCCATTCCCTCACTCAAACCCCCTACT...CTGCCTCATCCCGTTCCTTGTTACTCTTGTGGTGTGGAGGAGTAAAGACAGCGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| 3UTR-3UTR CCA 90 bp | TCGCTGTCTTTACTCCTCCACACCACAAGAGTAACAAGGAACGGGATGAGGCAGAACAGGTCCAACTCCTaGCCTGAGCCATCCATCCTT | + |
|
Preference number: 2 (lower is better) Translates to: SLSLLLHTTRVTRNGMRQNRSNS*PEPSIL Trigger: AAGGATGGATGGCTCAGGCCAGGAGTTGGACCTGTT...CTGCCTCATCCCGTTCCTTGTTACTCTTGTGGTGTGGAGGAGTAAAGACAGCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGCATCGCTGTCTTTACTCCTCCACACCACAAGAGTAACAAGGAACGGGATGGGTGAGCCTCAAGGATaGTGTTTTCTGCCAAGGGAT | + |
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Preference number: 2 (lower is better) Translates to: WASLSLLLHTTRVTRNGMGEPQG*CFLPRD Trigger: ATCCCTTGGCAGAAAACATCATCCTTGAGGCTCACC...CATCCCGTTCCTTGTTACTCTTGTGGTGTGGAGGAGTAAAGACAGCGATGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR-3UTR CCA 90 bp | GAAGCCCAGCCCAAACTTGTCTGCATTGTATTCCAAGCAGTTCTGCAGGTCGCTTTCTGCCAAGGGATTTaGGAAGCCCAGCCCAAACTT | + |
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Preference number: 2 (lower is better) Translates to: EAQPKLVCIVFQAVLQVAFCQGI*EAQPKL Trigger: AAGTTTGGGCTGGGCTTCCCAAATCCCTTGGCAGAA...AGCGACCTGCAGAACTGCTTGGAATACAATGCAGACAAGTTTGGGCTGGGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR-3UTR CCA 90 bp | CTGTCTTTACTCCTCCACACCACAAGAGTAACAAGGAACGGGATGAGGCAGATGTTCTGCCAAGGGATTTaGGAAGCCCAGCCCAAACTT | + |
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Preference number: 2 (lower is better) Translates to: LSLLLHTTRVTRNGMRQMFCQGI*EAQPKL Trigger: AAGTTTGGGCTGGGCTTCCCAAATCCCTTGGCAGAA...CATCTGCCTCATCCCGTTCCTTGTTACTCTTGTGGTGTGGAGGAGTAAAGACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR-3UTR GCA 90 bp | CGCAAAGTGTATCAGGTGAGCCTCAAGGATGATGTTTTCTGCCAAGGGATTTGGAAGGATGATGTTTTCTaGCAAGGGATTTGGGAAGCC | + |
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Preference number: 2 (lower is better) Translates to: RKVYQVSLKDDVFCQGIWKDDVF*QGIWEA Trigger: GGCTTCCCAAATCCCTTGGCAGAAAACATCATCCTT...CCAAATCCCTTGGCAGAAAACATCATCCTTGAGGCTCACCTGATACACTTTGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR CCA 72 bp | GATGGGGGCTATGATCATGGCCAGGAGCACATCCTCTaGGGGATCAGAGAAGGTGGGCTGCACCAGGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: DGGYDHGQEHIL*GIREGGLHQGA Trigger: TGCTCCCTGGTGCAGCCCACCTTCTCTGATCCCCCAGAGGATGTGCTCCTGGCCATGATCATAGCCCCCATC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR GCA 72 bp | TTCGGCTGTAACGTAAAGAAGGGCGGGAAGCGGTACTaGCACGGCCACTCGAAACTCATCGCCATCGTAGTA | + |
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Preference number: 3 (lower is better) Translates to: FGCNVKKGGKRY*HGHSKLIAIVV Trigger: TACTACGATGGCGATGAGTTTCGAGTGGCCGTGGCAGTACCGCTTCCCGCCCTTCTTTACGTTACAGCCGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR CCA 72 bp | CGCTGTAGCTTGACGTTGTTGAAAAGCGGGCTCTCCTaGGCTTCCATCACCGTCATGCTGGACTGTTTGTGC | + |
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Preference number: 3 (lower is better) Translates to: RCSLTLLKSGLS*ASITVMLDCLC Trigger: GCACAAACAGTCCAGCATGACGGTGATGGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR-3UTR CAA 90 bp | AGGAGGAGAAAGAAGCTTGTGCAGGCGCATGTAGGTGGGTGTGTACTTATGTGTGTCATGCTGGACTGTTaGTGCAGGCGGCAGAAGGAC | + |
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Preference number: 3 (lower is better) Translates to: RRRKKLVQAHVGGCVLMCVMLDC*CRRQKD Trigger: GTCCTTCTGCCGCCTGCACAAACAGTCCAGCATGAC...ACACATAAGTACACACCCACCTACATGCGCCTGCACAAGCTTCTTTCTCCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR-3UTR CAA 90 bp | ATGAGGCAGATGGGGGCTATGATCATGGCCAGGAGCACATCCTCTGGGGGATCACTAATCAAAGTCCAGTaGCACCAGTCCTTGACAGAG | + |
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Preference number: 3 (lower is better) Translates to: MRQMGAMIMARSTSSGGSLIKVQ*HQSLTE Trigger: CTCTGTCAAGGACTGGTGCAACTGGACTTTGATTAG...TGATCCCCCAGAGGATGTGCTCCTGGCCATGATCATAGCCCCCATCTGCCTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000149585.8 |
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| 3UTR-3UTR CAA 90 bp | TTTGGGAAGCCCAGCCCAAACTTGTCTGCATTGTATTCCAAGCAGTTCTGCAGGGAAGCAGTAGGGGGTTaGAGTGAGGGAATGGATGGG | + |
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Preference number: 3 (lower is better) Translates to: FGKPSPNLSALYSKQFCREAVGG*SEGMDG Trigger: CCCATCCATTCCCTCACTCAAACCCCCTACTGCTTC...CCTGCAGAACTGCTTGGAATACAATGCAGACAAGTTTGGGCTGGGCTTCCCAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| 3UTR-3UTR CAA 90 bp | GAAATGGACCCTAGGCCTGGGCATCGCTGTCTTTACTCCTCCACACCACAAGAGCCAAACTTGTCTGCATaGTATTCCAAGCAGTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: EMDPRPGHRCLYSSTPQEPNLSA*YSKQFC Trigger: GCAGAACTGCTTGGAATACAATGCAGACAAGTTTGG...CTCTTGTGGTGTGGAGGAGTAAAGACAGCGATGCCCAGGCCTAGGGTCCATTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR-3UTR CAA 90 bp | CTGTCTTTACTCCTCCACACCACAAGAGTAACAAGGAACGGGATGAGGCAGATGTTTCTGCCAAGGGATTaGGGAAGCCCAGCCCAAACT | + |
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Preference number: 3 (lower is better) Translates to: LSLLLHTTRVTRNGMRQMFLPRD*GSPAQT Trigger: AGTTTGGGCTGGGCTTCCCAAATCCCTTGGCAGAAA...CATCTGCCTCATCCCGTTCCTTGTTACTCTTGTGGTGTGGAGGAGTAAAGACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR TCA 72 bp | AGCAGTTCGCAAAGTGTATCAGGTGAGCCTCAAGGATaGTGTTTTCTGCCAAGGGATTTGGGAAGCCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: SSSQSVSGEPQG*CFLPRDLGSPA Trigger: GGCTGGGCTTCCCAAATCCCTTGGCAGAAAACATCATCCTTGAGGCTCACCTGATACACTTTGCGAACTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR TCA 72 bp | GGCTGCACCAGGGAGCAGTTCGCAAAGTGTATCAGGTaGGCCTCAAGGATGATGTTTTCTGCCAAGGGATTT | + |
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Preference number: 3 (lower is better) Translates to: GCTREQFAKCIR*ASRMMFSAKGF Trigger: AAATCCCTTGGCAGAAAACATCATCCTTGAGGCTCACCTGATACACTTTGCGAACTGCTCCCTGGTGCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR CCA 72 bp | TGTATTCCAAGCAGTTCTGCAGGTCGCTGTAATGCCTaGGAAGCAGTAGGGGGTTTGAGTGAGGGAATGGAT | + |
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Preference number: 3 (lower is better) Translates to: CIPSSSAGRCNA*EAVGGLSEGMD Trigger: ATCCATTCCCTCACTCAAACCCCCTACTGCTTCCCAGGCATTACAGCGACCTGCAGAACTGCTTGGAATACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| 3UTR CCA 72 bp | GTAGGGCAAGAAACGCATCCTTTCTCCGTGGCACTGTaGGCTTACTCTATCCCAGGGACAGAAATAAAGGGT | + |
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Preference number: 3 (lower is better) Translates to: VGQETHPFSVAL*AYSIPGTEIKG Trigger: ACCCTTTATTTCTGTCCCTGGGATAGAGTAAGCCCACAGTGCCACGGAGAAAGGATGCGTTTCTTGCCCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR-3UTR CAA 90 bp | CTAGGCCTGGGCATCGCTGTCTTTACTCCTCCACACCACAAGAGTAACAAGGAACCAAACTTGTCTGCATaGTATTCCAAGCAGTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: LGLGIAVFTPPHHKSNKEPNLSA*YSKQFC Trigger: GCAGAACTGCTTGGAATACAATGCAGACAAGTTTGG...TTCCTTGTTACTCTTGTGGTGTGGAGGAGTAAAGACAGCGATGCCCAGGCCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR-3UTR CAA 90 bp | ATCGCTGTCTTTACTCCTCCACACCACAAGAGTAACAAGGAACGGGATGAGGCAAAGCCCAGCCCAAACTaGTCTGCATTGTATTCCAAG | + |
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Preference number: 3 (lower is better) Translates to: IAVFTPPHHKSNKERDEAKPSPN*SALYSK Trigger: CTTGGAATACAATGCAGACAAGTTTGGGCTGGGCTT...TGCCTCATCCCGTTCCTTGTTACTCTTGTGGTGTGGAGGAGTAAAGACAGCGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR CCA 72 bp | GTGAGCCTCAAGGATGATGTTTTCTGCCAAGGGATTTaGGAAGCCCAGCCCAAACTTGTCTGCATTGTATTC | + |
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Preference number: 3 (lower is better) Translates to: VSLKDDVFCQGI*EAQPKLVCIVF Trigger: GAATACAATGCAGACAAGTTTGGGCTGGGCTTCCCAAATCCCTTGGCAGAAAACATCATCCTTGAGGCTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR-3UTR CAA 90 bp | TCAAGGATGATGTTTTCTGCCAAGGGATTTGGGAAGCCCAGCCCAAACTTGTCTGAGTCCATGCAACTCTaGTACTCATACCAGCAAGGT | + |
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Preference number: 3 (lower is better) Translates to: SRMMFSAKGFGKPSPNLSESMQL*YSYQQG Trigger: ACCTTGCTGGTATGAGTACAAGAGTTGCATGGACTC...AGACAAGTTTGGGCTGGGCTTCCCAAATCCCTTGGCAGAAAACATCATCCTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149585.8 |
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| 3UTR TCA 72 bp | CATAACTTTATTTTAAAGACTACAAACATTGTGTCGTaGGTCCCCTTTGCTGCCATTTCCACCAATCCACAG | + |
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Preference number: 3 (lower is better) Translates to: HNFILKTTNIVS*VPFAAISTNPQ Trigger: CTGTGGATTGGTGGAAATGGCAGCAAAGGGGACTCACGACACAATGTTTGTAGTCTTTAAAATAAAGTTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000122006.8 ENSMUST00000129680.8 ENSMUST00000149585.8 |
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| CDS-3UTR TCA 90 bp | GGCCAGGAGCACATCCTCTGGGGGATCAGAGAAGGTGGGCTGCACCAGGGAGCAGGACTCCGGAGAGGCTaGGACAGCGCCCAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GQEHILWGIREGGLHQGAGLRRG*DSAQQQ Trigger: CTGCTGCTGGGCGCTGTCTCAGCCTCTCCGGAGTCC...TGCTCCCTGGTGCAGCCCACCTTCTCTGATCCCCCAGAGGATGTGCTCCTGGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| CDS-3UTR TCA 90 bp | GAAATGGACCCTAGGCCTGGGCATCGCTGTCTTTACTCCTCCACACCACAAGAGGGACTCCGGAGAGGCTaGGACAGCGCCCAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: EMDPRPGHRCLYSSTPQEGLRRG*DSAQQQ Trigger: CTGCTGCTGGGCGCTGTCTCAGCCTCTCCGGAGTCC...CTCTTGTGGTGTGGAGGAGTAAAGACAGCGATGCCCAGGCCTAGGGTCCATTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| CDS-3UTR TCA 90 bp | AGGAGGAGAAAGAAGCTTGTGCAGGCGCATGTAGGTGGGTGTGTACTTATGTGTGGACTCCGGAGAGGCTaGGACAGCGCCCAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: RRRKKLVQAHVGGCVLMCGLRRG*DSAQQQ Trigger: CTGCTGCTGGGCGCTGTCTCAGCCTCTCCGGAGTCC...ACACATAAGTACACACCCACCTACATGCGCCTGCACAAGCTTCTTTCTCCTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS-3UTR TCA 90 bp | CTCTCCTGGGCTTCCATCACCGTCATGCTGGACTGTTTGTGCAGGCGGCAGAAGTCTGCTGCTGTCTTTTaGCACAAGGCTGTCCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: LSWASITVMLDCLCRRQKSAAVF*HKAVLS Trigger: ACTGAGGACAGCCTTGTGTCAAAAGACAGCAGCAGA...CTTCTGCCGCCTGCACAAACAGTCCAGCATGACGGTGATGGAAGCCCAGGAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR CAA 72 bp | GACTCCACAGGAAGTTTCCGCTGTAGCTTGACGTTGTaGAAAAGCGGGCTCTCCTGGGCTTCCATCACCGTC | + |
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Preference number: 4 (lower is better) Translates to: DSTGSFRCSLTL*KSGLSWASITV Trigger: GACGGTGATGGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACTTCCTGTGGAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS-3UTR CCA 90 bp | GGAAGTTTCCGCTGTAGCTTGACGTTGTTGAAAAGCGGGCTCTCCTGGGCTTCCCAAGGCTGTCCTCAGTaGGATGAGATTGATTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GSFRCSLTLLKSGLSWASQGCPQ*DEIDSG Trigger: CCCAGAATCAATCTCATCCCACTGAGGACAGCCTTG...GGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| 3UTR CAA 72 bp | ATTGACTCCACAGGAAGTTTCCGCTGTAGCTTGACGTaGTTGAAAAGCGGGCTCTCCTGGGCTTCCATCACC | + |
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Preference number: 4 (lower is better) Translates to: IDSTGSFRCSLT*LKSGLSWASIT Trigger: GGTGATGGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACTTCCTGTGGAGTCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS-3UTR GCA 90 bp | AAGCGGTACTGCCACGGCCACTCGAAACTCATCGCCATCGTAGTAGCCCAGAAATTGTCACCAATCTGCTaGTGTCTTTTGACACAAGGC | + |
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Preference number: 4 (lower is better) Translates to: KRYCHGHSKLIAIVVAQKLSPIC*CLLTQG Trigger: GCCTTGTGTCAAAAGACAGCAGCAGATTGGTGACAA...TTTCTGGGCTACTACGATGGCGATGAGTTTCGAGTGGCCGTGGCAGTACCGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS-3UTR CCA 90 bp | TGGGAAGCCCAGCCCAAACTTGTCTGCATTGTATTCCAAGCAGTTCTGCAGGTCCAAGGCTGTCCTCAGTaGGATGAGATTGATTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: WEAQPKLVCIVFQAVLQVQGCPQ*DEIDSG Trigger: CCCAGAATCAATCTCATCCCACTGAGGACAGCCTTG...GACCTGCAGAACTGCTTGGAATACAATGCAGACAAGTTTGGGCTGGGCTTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| CDS-3UTR GCA 90 bp | GGAAGTTTCCGCTGTAGCTTGACGTTGTTGAAAAGCGGGCTCTCCTGGGCTTCCTTCTTGTCACCAATCTaGTGCTGTCTTTTGACACAA | + |
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Preference number: 4 (lower is better) Translates to: GSFRCSLTLLKSGLSWASFLSPI*CCLLTQ Trigger: TTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAA...GGAAGCCCAGGAGAGCCCGCTTTTCAACAACGTCAAGCTACAGCGGAAACTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS-3UTR CCA 90 bp | TCAAGGATGATGTTTTCTGCCAAGGGATTTGGGAAGCCCAGCCCAAACTTGTCTCAAGGCTGTCCTCAGTaGGATGAGATTGATTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SRMMFSAKGFGKPSPNLSQGCPQ*DEIDSG Trigger: CCCAGAATCAATCTCATCCCACTGAGGACAGCCTTG...AGACAAGTTTGGGCTGGGCTTCCCAAATCCCTTGGCAGAAAACATCATCCTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| 3UTR CAA 72 bp | CAGTTGCACCAGTCCTTGACAGAGTCCATGCAACTCTaGTACTCATACCAGCAAGGTAGGACATGTGTTTCG | + |
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Preference number: 4 (lower is better) Translates to: QLHQSLTESMQL*YSYQQGRTCVS Trigger: CGAAACACATGTCCTACCTTGCTGGTATGAGTACAAGAGTTGCATGGACTCTGTCAAGGACTGGTGCAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149585.8 |
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| CDS-3UTR CAA 90 bp | GGCCAGGAGCACATCCTCTGGGGGATCAGAGAAGGTGGGCTGCACCAGGGAGCACTTCCATCTTCCCTTTaGACACAAGGCTGTCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: GQEHILWGIREGGLHQGALPSSL*TQGCPQ Trigger: CTGAGGACAGCCTTGTGTCAAAAGGGAAGATGGAAG...TGCTCCCTGGTGCAGCCCACCTTCTCTGATCCCCCAGAGGATGTGCTCCTGGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| CDS CCA 90 bp | CAGCAGAAAGGTTCCGGACTCCTCTCGGGAGGCGCCGCAGTGGGATaGGAACGGTTCTTGTCACCAATCTGCTGCTGTCTTTTGACACAA | + |
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Preference number: 5 (lower is better) Translates to: QQKGSGLLSGGAAVG*ERFLSPICCCLLTQ Trigger: TTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAACCGTTCCCATCCCACTGCGGCGCCTCCCGAGAGGAGTCCGGAACCTTTCTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS GCA 90 bp | TCGGGAGGCGCCGCAGTGGGATGGGAACGGTTCTTGTCACCAATCTaGTGCTGTCTTTTGACACAAGGCTGTCCTCAGTGGGATGAGATT | + |
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Preference number: 5 (lower is better) Translates to: SGGAAVGWERFLSPI*CCLLTQGCPQWDEI Trigger: AATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAACCGTTCCCATCCCACTGCGGCGCCTCCCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS-3UTR CAA 90 bp | AAGCGGTACTGCCACGGCCACTCGAAACTCATCGCCATCGTAGTAGCCCAGAAACTCAGTGGGATGAGATaGATTCTGGGACTCCGGAAG | + |
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Preference number: 5 (lower is better) Translates to: KRYCHGHSKLIAIVVAQKLSGMR*ILGLRK Trigger: CTTCCGGAGTCCCAGAATCAATCTCATCCCACTGAG...TTTCTGGGCTACTACGATGGCGATGAGTTTCGAGTGGCCGTGGCAGTACCGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS-3UTR CAA 90 bp | CTCCTCCACACCACAAGAGTAACAAGGAACGGGATGAGGCAGATGGGGGCTATGCTAATCAAAGTCCAGTaGCACCAGTCCTTGACAGAG | + |
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Preference number: 5 (lower is better) Translates to: LLHTTRVTRNGMRQMGAMLIKVQ*HQSLTE Trigger: CTCTGTCAAGGACTGGTGCAACTGGACTTTGATTAG...CATAGCCCCCATCTGCCTCATCCCGTTCCTTGTTACTCTTGTGGTGTGGAGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| CDS TCA 90 bp | CAGTGGGATGGGAACGGTTCTTGTCACCAATCTGCTGCTGTCTTTTaGCACAAGGCTGTCCTCAGTGGGATGAGATTGATTCTGGGACTC | + |
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Preference number: 5 (lower is better) Translates to: QWDGNGSCHQSAAVF*HKAVLSGMRLILGL Trigger: GAGTCCCAGAATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAACCGTTCCCATCCCACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS-3UTR CAA 90 bp | CAGGGAGCAGTTCGCAAAGTGTATCAGGTGAGCCTCAAGGATGATGTTTTCTGCCTCAGTGGGATGAGATaGATTCTGGGACTCCGGAAG | + |
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Preference number: 5 (lower is better) Translates to: QGAVRKVYQVSLKDDVFCLSGMR*ILGLRK Trigger: CTTCCGGAGTCCCAGAATCAATCTCATCCCACTGAG...GCAGAAAACATCATCCTTGAGGCTCACCTGATACACTTTGCGAACTGCTCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122006.8 ENSMUST00000149585.8 |
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| CDS-3UTR CAA 90 bp | TCAGAGAAGGGAATCCCCTTTGAAAAGTTCCCTAGCAGGACACTCGTGACTAAGCTCAGTGGGATGAGATaGATTCTGGGACTCCGGAAG | + |
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Preference number: 5 (lower is better) Translates to: SEKGIPFEKFPSRTLVTKLSGMR*ILGLRK Trigger: CTTCCGGAGTCCCAGAATCAATCTCATCCCACTGAG...CTTAGTCACGAGTGTCCTGCTAGGGAACTTTTCAAAGGGGATTCCCTTCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149585.8 |
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| CDS TCA 90 bp | ATGTGTTTCGTAGTCTTCCATCTTCCCTGTGGGGACATAGGCTTTTaGCACAAGGCTGTCCTCAGTGGGATGAGATTGATTCTGGGACTC | + |
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Preference number: 5 (lower is better) Translates to: MCFVVFHLPCGDIGF*HKAVLSGMRLILGL Trigger: GAGTCCCAGAATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGCCTATGTCCCCACAGGGAAGATGGAAGACTACGAAACACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107282.4 |
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| CDS-3UTR CAA 90 bp | CTGTCTTTACTCCTCCACACCACAAGAGTAACAAGGAACGGGATGAGGCAGATGGAGTCCATGCAACTCTaGTACTCATACCAGCAAGGT | + |
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Preference number: 5 (lower is better) Translates to: LSLLLHTTRVTRNGMRQMESMQL*YSYQQG Trigger: ACCTTGCTGGTATGAGTACAAGAGTTGCATGGACTC...CATCTGCCTCATCCCGTTCCTTGTTACTCTTGTGGTGTGGAGGAGTAAAGACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122006.8 |
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| CDS TCA 72 bp | CTCCGGAAGAGATTGGTTCAGGGACTCCGGAGAGGCTaGGACAGCTCTCCGTCCGGTCTGGGCAGGCACCCC | + |
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Preference number: 6 (lower is better) Translates to: LRKRLVQGLRRG*DSSPSGLGRHP Trigger: GGGGTGCCTGCCCAGACCGGACGGAGAGCTGTCTCAGCCTCTCCGGAGTCCCTGAACCAATCTCTTCCGGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151830.2 |
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| CDS CCA 72 bp | GGTTCCGGACTCCTCTCGGGAGGCGCCGCAGTGGGATaGGAACGGTTCTTGTCACCAATCTGCTGCTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: GSGLLSGGAAVG*ERFLSPICCCL Trigger: AAGACAGCAGCAGATTGGTGACAAGAACCGTTCCCATCCCACTGCGGCGCCTCCCGAGAGGAGTCCGGAACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS CAA 90 bp | TCCGGACTCCTCTCGGGAGGCGCCGCAGTGGGATGGGAACGGTTCTaGTCACCAATCTGCTGCTGTCTTTTGACACAAGGCTGTCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: SGLLSGGAAVGWERF*SPICCCLLTQGCPQ Trigger: CTGAGGACAGCCTTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAACCGTTCCCATCCCACTGCGGCGCCTCCCGAGAGGAGTCCGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS CAA 72 bp | CTCTCGGGAGGCGCCGCAGTGGGATGGGAACGGTTCTaGTCACCAATCTGCTGCTGTCTTTTGACACAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LSGGAAVGWERF*SPICCCLLTQG Trigger: GCCTTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAACCGTTCCCATCCCACTGCGGCGCCTCCCGAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS GCA 72 bp | GCCGCAGTGGGATGGGAACGGTTCTTGTCACCAATCTaGTGCTGTCTTTTGACACAAGGCTGTCCTCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: AAVGWERFLSPI*CCLLTQGCPQW Trigger: CCACTGAGGACAGCCTTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAACCGTTCCCATCCCACTGCGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS GCA 72 bp | GCAGTGGGATGGGAACGGTTCTTGTCACCAATCTGCTaGTGTCTTTTGACACAAGGCTGTCCTCAGTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: AVGWERFLSPIC*CLLTQGCPQWD Trigger: ATCCCACTGAGGACAGCCTTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAACCGTTCCCATCCCACTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS CAA 90 bp | GCAGTGGGATGGGAACGGTTCTTGTCACCAATCTGCTGCTGTCTTTaGACACAAGGCTGTCCTCAGTGGGATGAGATTGATTCTGGGACT | + |
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Preference number: 6 (lower is better) Translates to: AVGWERFLSPICCCL*TQGCPQWDEIDSGT Trigger: AGTCCCAGAATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAACCGTTCCCATCCCACTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS CCA 72 bp | GCCTCAGGGATCCTTTTGACACAAGGCTGTCCTCAGTaGGATGAGATTGATTCTGGGACTCCGGAAGAGATT | + |
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Preference number: 6 (lower is better) Translates to: ASGILLTQGCPQ*DEIDSGTPEEI Trigger: AATCTCTTCCGGAGTCCCAGAATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGGATCCCTGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149585.8 |
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| CDS CAA 72 bp | CGTAGTCTTCCATCTTCCCTGTGGGGACATAGGCTTTaGACACAAGGCTGTCCTCAGTGGGATGAGATTGAT | + |
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Preference number: 6 (lower is better) Translates to: RSLPSSLWGHRL*TQGCPQWDEID Trigger: ATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGCCTATGTCCCCACAGGGAAGATGGAAGACTACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107282.4 |
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| CDS CAA 90 bp | CATGTGTTTCGTAGTCTTCCATCTTCCCTGTGGGGACATAGGCTTTaGACACAAGGCTGTCCTCAGTGGGATGAGATTGATTCTGGGACT | + |
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Preference number: 6 (lower is better) Translates to: HVFRSLPSSLWGHRL*TQGCPQWDEIDSGT Trigger: AGTCCCAGAATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGCCTATGTCCCCACAGGGAAGATGGAAGACTACGAAACACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107282.4 |
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| CDS TCA 72 bp | GTAGTCTTCCATCTTCCCTGTGGGGACATAGGCTTTTaGCACAAGGCTGTCCTCAGTGGGATGAGATTGATT | + |
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Preference number: 6 (lower is better) Translates to: VVFHLPCGDIGF*HKAVLSGMRLI Trigger: AATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGCCTATGTCCCCACAGGGAAGATGGAAGACTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107282.4 |
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| CDS TCA 72 bp | GGGAACGGTTCTTGTCACCAATCTGCTGCTGTCTTTTaGCACAAGGCTGTCCTCAGTGGGATGAGATTGATT | + |
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Preference number: 6 (lower is better) Translates to: GNGSCHQSAAVF*HKAVLSGMRLI Trigger: AATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGACAGCAGCAGATTGGTGACAAGAACCGTTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS CCA 72 bp | CTTCCATCTTCCCTTTTGACACAAGGCTGTCCTCAGTaGGATGAGATTGATTCTGGGACTCCGGAAGAGATT | + |
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Preference number: 6 (lower is better) Translates to: LPSSLLTQGCPQ*DEIDSGTPEEI Trigger: AATCTCTTCCGGAGTCCCAGAATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGGGAAGATGGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000122006.8 ENSMUST00000129680.8 ENSMUST00000151830.2 |
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| CDS CCA 72 bp | ATCTGCTGCTGTCTTTTGACACAAGGCTGTCCTCAGTaGGATGAGATTGATTCTGGGACTCCGGAAGAGATT | + |
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Preference number: 6 (lower is better) Translates to: ICCCLLTQGCPQ*DEIDSGTPEEI Trigger: AATCTCTTCCGGAGTCCCAGAATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGACAGCAGCAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128260.9 |
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| CDS CAA 90 bp | ACCAGCAAGGTAGGACATGTGTTTCGTAGTCTTCCATCTTCCCTTTaGACACAAGGCTGTCCTCAGTGGGATGAGATTGATTCTGGGACT | + |
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Preference number: 6 (lower is better) Translates to: TSKVGHVFRSLPSSL*TQGCPQWDEIDSGT Trigger: AGTCCCAGAATCAATCTCATCCCACTGAGGACAGCCTTGTGTCAAAAGGGAAGATGGAAGACTACGAAACACATGTCCTACCTTGCTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000122006.8 ENSMUST00000129680.8 ENSMUST00000151830.2 |
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