Pregenerated sensors for RAMP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034353Ensembl transcript IDs: ENSMUST00000097648.6, ENSMUST00000165855.8, ENSMUST00000188475.7
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GACGCCATTAAGGAAACCATTGCCTTCCATCATCTGGAGTTAATCTaGTGGAGCAGTCCTCCAGTTGGACCATCGAGGGTGTCTCCTCTC | + |
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Preference number: 1 (lower is better) Translates to: DAIKETIAFHHLELI*WSSPPVGPSRVSPL Trigger: GAGAGGAGACACCCTCGATGGTCCAACTGGAGGACTGCTCCATCAGATTAACTCCAGATGATGGAAGGCAATGGTTTCCTTAATGGCGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR GCA 90 bp | AGGAGACCCATTGCCATCCACCATGGAGGTGAATCCCAGCAATCGTaGAGGAGAAATACTGACAACAGGAACACAGAGGACCATCAGAGA | + |
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Preference number: 1 (lower is better) Translates to: RRPIAIHHGGESQQS*RRNTDNRNTEDHQR Trigger: TCTCTGATGGTCCTCTGTGTTCCTGTTGTCAGTATTTCTCCTGCACGATTGCTGGGATTCACCTCCATGGTGGATGGCAATGGGTCTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000165855.8 ENSMUST00000188475.7 |
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| 3UTR CCA 90 bp | TCCTTTGGATTTCCATGTCAAAGTCCGGGAAGGCAGGCTGGTCTCTaGTCTCCAGTTCAGGTCACAAATGAGCCCAGTCTTATTTTCTTT | + |
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Preference number: 1 (lower is better) Translates to: SFGFPCQSPGRQAGL*SPVQVTNEPSLIFF Trigger: AAAGAAAATAAGACTGGGCTCATTTGTGACCTGAACTGGAGACCAGAGACCAGCCTGCCTTCCCGGACTTTGACATGGAAATCCAAAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 90 bp | GCTTTTGGATTCTGTGACTTATGCATGTCTTGTTTTCCCATCCTTTaGATTTCCATGTCAAAGTCCGGGAAGGCAGGCTGGTCTCTGGTC | + |
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Preference number: 1 (lower is better) Translates to: AFGFCDLCMSCFPIL*ISMSKSGKAGWSLV Trigger: GACCAGAGACCAGCCTGCCTTCCCGGACTTTGACATGGAAATCCAAAGGATGGGAAAACAAGACATGCATAAGTCACAGAATCCAAAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR GCA 90 bp | AGTCAGCTCCCTGGTTCTCTTGCAGCTTTTGGATTCTGTGACTTATaGATGTCTTGTTTTCCCATCCTTTGGATTTCCATGTCAAAGTCC | + |
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Preference number: 1 (lower is better) Translates to: SQLPGSLAAFGFCDL*MSCFPILWISMSKS Trigger: GGACTTTGACATGGAAATCCAAAGGATGGGAAAACAAGACATGCATAAGTCACAGAATCCAAAAGCTGCAAGAGAACCAGGGAGCTGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR TCA 90 bp | GTGAGAGGGGTCATGTGTGAGGGGTCTTGGGCTCACTGCTCCCTTGCCTGTCCCGCCACGCTCTGCAGATaGCCTCAAACCCCAGCCTTC | + |
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Preference number: 2 (lower is better) Translates to: VRGVMCEGSWAHCSLACPATLCR*PQTPAF Trigger: GAAGGCTGGGGTTTGAGGTCATCTGCAGAGCGTGGC...GGGACAGGCAAGGGAGCAGTGAGCCCAAGACCCCTCACACATGACCCCTCTCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR CCA 90 bp | GTGAGAGGGGTCATGTGTGAGGGGTCTTGGGCTCACTGCTCCCTTGCCTGTCCCGAGCAGGATGCAAGGTaGGACCTGCTCCTGATGCTG | + |
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Preference number: 2 (lower is better) Translates to: VRGVMCEGSWAHCSLACPEQDAR*DLLLML Trigger: CAGCATCAGGAGCAGGTCCCACCTTGCATCCTGCTC...GGGACAGGCAAGGGAGCAGTGAGCCCAAGACCCCTCACACATGACCCCTCTCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR GCA 90 bp | CCTTTAGGGAAGGGACACAGAGACAGCACCCTCTTCACGTGCTACTCAGCCGAAGCAGAGGCAGGCCCCTaGTCCCCTGCTAGAAGCCTC | + |
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Preference number: 2 (lower is better) Translates to: PLGKGHRDSTLFTCYSAEAEAGP*SPARSL Trigger: GAGGCTTCTAGCAGGGGAGCAGGGGCCTGCCTCTGC...TTCGGCTGAGTAGCACGTGAAGAGGGTGCTGTCTCTGTGTCCCTTCCCTAAAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR CCA 90 bp | CATCCTGTGAGAGGGGTCATGTGTGAGGGGTCTTGGGCTCACTGCTCCCTTGCCTCCGGGAAGGCAGGCTaGTCTCTGGTCTCCAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: HPVRGVMCEGSWAHCSLASGKAG*SLVSSS Trigger: TGAACTGGAGACCAGAGACCAGCCTGCCTTCCCGGA...GGCAAGGGAGCAGTGAGCCCAAGACCCCTCACACATGACCCCTCTCACAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR GCA 90 bp | AGTTCCGGGAACGAGGCACTGGGTCAGCTTCATCTCCCAAGTCAGCTCCCTGGTAGAAAGCAGGGACCATaGAGTAGAGGCCAAGGGCAT | + |
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Preference number: 2 (lower is better) Translates to: SSGNEALGQLHLPSQLPGRKQGP*SRGQGH Trigger: ATGCCCTTGGCCTCTACTGCATGGTCCCTGCTTTCT...ACCAGGGAGCTGACTTGGGAGATGAAGCTGACCCAGTGCCTCGTTCCCGGAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR CCA 90 bp | TTTCCATGTCAAAGTCCGGGAAGGCAGGCTGGTCTCTGGTCTCCAGTTCAGGTCGCTGGGCTAGGCCCATaGTTCCCCAATCCCTCATCA | + |
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Preference number: 2 (lower is better) Translates to: FPCQSPGRQAGLWSPVQVAGLGP*FPNPSS Trigger: TGATGAGGGATTGGGGAACCATGGGCCTAGCCCAGC...GACCTGAACTGGAGACCAGAGACCAGCCTGCCTTCCCGGACTTTGACATGGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR TCA 90 bp | GGAATGGATGGAGATCCACTCCCAGCGGACCAGGCTTCCCTGGAAGGCTGGTGTGTTTACTGGAAACCCTaGGAACTTGTTAGTATGCGC | + |
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Preference number: 2 (lower is better) Translates to: GMDGDPLPADQASLEGWCVYWKP*ELVSMR Trigger: GCGCATACTAACAAGTTCTCAGGGTTTCCAGTAAAC...ACACCAGCCTTCCAGGGAAGCCTGGTCCGCTGGGAGTGGATCTCCATCCATTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR GCA 90 bp | GGAATGGATGGAGATCCACTCCCAGCGGACCAGGCTTCCCTGGAAGGCTGGTGTCCTTCACTTGTCCTATaGACTAGGGTTTCTCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: GMDGDPLPADQASLEGWCPSLVL*TRVSQR Trigger: TCTCTGAGAAACCCTAGTGCATAGGACAAGTGAAGG...ACACCAGCCTTCCAGGGAAGCCTGGTCCGCTGGGAGTGGATCTCCATCCATTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR TCA 90 bp | GGAACACCTAAGAAGACAAAAGGTGGAGTGTCTGAGGGAGCAAAGAACGCATCCCATCCACCATGGAGGTaGATCCCAGCAATCGTGCAG | + |
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Preference number: 2 (lower is better) Translates to: GTPKKTKGGVSEGAKNASHPPWR*IPAIVQ Trigger: CTGCACGATTGCTGGGATTCACCTCCATGGTGGATG...GGATGCGTTCTTTGCTCCCTCAGACACTCCACCTTTTGTCTTCTTAGGTGTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000165855.8 ENSMUST00000188475.7 |
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| 3UTR-3UTR GCA 90 bp | AGTTCCGGGAACGAGGCACTGGGTCAGCTTCATCTCCCAAGTCAGCTCCCTGGTCTACAAACACATCTGTaGAGTCTTCCTTGGAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: SSGNEALGQLHLPSQLPGLQTHL*SLPWSS Trigger: TGAACTCCAAGGAAGACTGCACAGATGTGTTTGTAG...ACCAGGGAGCTGACTTGGGAGATGAAGCTGACCCAGTGCCTCGTTCCCGGAACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR CCA 90 bp | CCATGTCAAAGTCCGGGAAGGCAGGCTGGTCTCTGGTCTCCAGTTCAGGTCACAAGTGTACCAGAGACCTaGTGCTTAGAACAATCTCAG | + |
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Preference number: 2 (lower is better) Translates to: PCQSPGRQAGLWSPVQVTSVPET*CLEQSQ Trigger: CTGAGATTGTTCTAAGCACCAGGTCTCTGGTACACT...TGTGACCTGAACTGGAGACCAGAGACCAGCCTGCCTTCCCGGACTTTGACATGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR TCA 90 bp | ATACCGCTAATGCTCATTTTTGAGGAATGGATGGAGATCCACTCCCAGCGGACCTCAGAGAAGACAGGGTaGCCTTTAGGGAAGGGACAC | + |
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Preference number: 2 (lower is better) Translates to: IPLMLIFEEWMEIHSQRTSEKTG*PLGKGH Trigger: GTGTCCCTTCCCTAAAGGTCACCCTGTCTTCTCTGA...GGTCCGCTGGGAGTGGATCTCCATCCATTCCTCAAAAATGAGCATTAGCGGTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR TCA 90 bp | CTCAAACCCCAGCCTTCTTGGTTTACTGGAAACCCTGAGAACTTGTTAGTATGCCAGAAGGGACAGTGCTaGGTGGAGGAGGAGGTCACA | + |
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Preference number: 2 (lower is better) Translates to: LKPQPSWFTGNPENLLVCQKGQC*VEEEVT Trigger: TGTGACCTCCTCCTCCACTCAGCACTGTCCCTTCTG...GCATACTAACAAGTTCTCAGGGTTTCCAGTAAACCAAGAAGGCTGGGGTTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR GCA 90 bp | TGCATGTCTTGTTTTCCCATCCTTTGGATTTCCATGTCAAAGTCCGGGAAGGCAGCCAGTCAGTGGTGGTaGACACCTGAGAGACAGAGG | + |
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Preference number: 2 (lower is better) Translates to: CMSCFPILWISMSKSGKAASQWW*TPERQR Trigger: CCTCTGTCTCTCAGGTGTGCACCACCACTGACTGGC...TGCCTTCCCGGACTTTGACATGGAAATCCAAAGGATGGGAAAACAAGACATGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR TCA 90 bp | AGAGGCAGGAGGATCTCTGAGTCCAAGTCCAGTTTGGTTTACAGAGCAGGTTCCAACTCAGGGGATCTTTaGCTGGGTGTCATCTGGTTA | + |
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Preference number: 2 (lower is better) Translates to: RGRRISESKSSLVYRAGSNSGDL*LGVIWL Trigger: TAACCAGATGACACCCAGTCAAAGATCCCCTGAGTT...GGAACCTGCTCTGTAAACCAAACTGGACTTGGACTCAGAGATCCTCCTGCCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR GCA 90 bp | AGAGGCAGGAGGATCTCTGAGTCCAAGTCCAGTTTGGTTTACAGAGCAGGTTCCGTACCAGAGACCTGGTaGTTAGAACAATCTCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: RGRRISESKSSLVYRAGSVPETW*LEQSQR Trigger: CCTCTGAGATTGTTCTAAGCACCAGGTCTCTGGTAC...GGAACCTGCTCTGTAAACCAAACTGGACTTGGACTCAGAGATCCTCCTGCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CAA 90 bp | GGCATCAGAATCATTTGGGAACCCCTCAACAAACTCAGGGGATCTTaGACTGGGTGTCATCTGGTTAGAGACCCTGCGATAAACTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: GIRIIWEPLNKLRGS*TGCHLVRDPAINSS Trigger: TGAGGAGTTTATCGCAGGGTCTCTAACCAGATGACACCCAGTCAAAGATCCCCTGAGTTTGTTGAGGGGTTCCCAAATGATTCTGATGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR TCA 90 bp | CCTTGTGCACATGGTAATTATGTACTTGGGATGAGTTCCTACAAGAGAAATGACGTGGTGGTGCACACCTaGGAGACAGAGGCAGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: PCAHGNYVLGMSSYKRNDVVVHT*ETEAGG Trigger: TCCTCCTGCCTCTGTCTCTCAGGTGTGCACCACCAC...GTCATTTCTCTTGTAGGAACTCATCCCAAGTACATAATTACCATGTGCACAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR CCA 90 bp | GACACTCAAGACTTCTGCTCCACACTTCTGACTTGTTTTCAGGAGGATACCGCTCTCATTTTTGAGGAATaGATGGAGATCCACTCCCAG | + |
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Preference number: 2 (lower is better) Translates to: DTQDFCSTLLTCFQEDTALIFEE*MEIHSQ Trigger: CTGGGAGTGGATCTCCATCCATTCCTCAAAAATGAG...AGCGGTATCCTCCTGAAAACAAGTCAGAAGTGTGGAGCAGAAGTCTTGAGTGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR CCA 90 bp | CCTTGTGCACATGGTAATTATGTACTTGGGATGAGTTCCTACAAGAGAAATGACGGCATCAGAATCATTTaGGAACCCCTCAACAAACTC | + |
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Preference number: 2 (lower is better) Translates to: PCAHGNYVLGMSSYKRNDGIRII*EPLNKL Trigger: GAGTTTGTTGAGGGGTTCCCAAATGATTCTGATGCC...GTCATTTCTCTTGTAGGAACTCATCCCAAGTACATAATTACCATGTGCACAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR TCA 72 bp | CTGTCCATGGCTTCCCAGGGACAGAAGGGACAGTGCTaGGTGGAGGAGGAGGTCACATCCCTGGCACCTCTT | + |
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Preference number: 3 (lower is better) Translates to: LSMASQGQKGQC*VEEEVTSLAPL Trigger: AAGAGGTGCCAGGGATGTGACCTCCTCCTCCACTCAGCACTGTCCCTTCTGTCCCTGGGAAGCCATGGACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | GATCCACTCCCAGCGGACCAGGCTTCCCTGGAAGGCTaGTGTACAAGCAGTCATCCTGTGAGAGGGGTCATG | + |
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Preference number: 3 (lower is better) Translates to: DPLPADQASLEG*CTSSHPVRGVM Trigger: CATGACCCCTCTCACAGGATGACTGCTTGTACACCAGCCTTCCAGGGAAGCCTGGTCCGCTGGGAGTGGATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR TCA 72 bp | GTGTACAAGCAGTCATCCTGTGAGAGGGGTCATGTGTaGGGGGTCTTGGGCTCACTGCTCCCTTGCCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: VYKQSSCERGHV*GVLGSLLPCLS Trigger: GGACAGGCAAGGGAGCAGTGAGCCCAAGACCCCTCACACATGACCCCTCTCACAGGATGACTGCTTGTACAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR CAA 90 bp | CATCCTGTGAGAGGGGTCATGTGTGAGGGGTCTTGGGCTCACTGCTCCCTTGCCTCTGTGCAGTCTTCCTaGGAGTTCAGAATGCCCACA | + |
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Preference number: 3 (lower is better) Translates to: HPVRGVMCEGSWAHCSLASVQSS*EFRMPT Trigger: TGTGGGCATTCTGAACTCCAAGGAAGACTGCACAGA...GGCAAGGGAGCAGTGAGCCCAAGACCCCTCACACATGACCCCTCTCACAGGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR TCA 72 bp | CTTCCCTGGAAGGCTGGTGTACAAGCAGTCATCCTGTaGGAGGGGTCATGTGTGAGGGGTCTTGGGCTCACT | + |
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Preference number: 3 (lower is better) Translates to: LPWKAGVQAVIL*EGSCVRGLGLT Trigger: AGTGAGCCCAAGACCCCTCACACATGACCCCTCTCACAGGATGACTGCTTGTACACCAGCCTTCCAGGGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | TTTCCAAGTACTAAGAGCAGGGGCTGTGCCAGTCAGTaGTGGTGCACACCTGAGAGACAGAGGCAGGAGGAT | + |
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Preference number: 3 (lower is better) Translates to: FPSTKSRGCASQ*WCTPERQRQED Trigger: ATCCTCCTGCCTCTGTCTCTCAGGTGTGCACCACCACTGACTGGCACAGCCCCTGCTCTTAGTACTTGGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | CTGAGTGGAGGAGGAGGTCACATCCCTGGCACCTCTTaGCCTTCACTTGTCCTATGCACTAGGGTTTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: LSGGGGHIPGTS*PSLVLCTRVSQ Trigger: CTGAGAAACCCTAGTGCATAGGACAAGTGAAGGCCAAGAGGTGCCAGGGATGTGACCTCCTCCTCCACTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | AACTTGTTAGTATGCGCAGTTCCGGGAACGAGGCACTaGGTCAGCTTCATCTCCCAAGTCAGCTCCCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: NLLVCAVPGTRH*VSFISQVSSLV Trigger: AACCAGGGAGCTGACTTGGGAGATGAAGCTGACCCAGTGCCTCGTTCCCGGAACTGCGCATACTAACAAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | TCATCTGGAGTTAATCTGATGGAGCAGTCCTCCAGTTaGACCATCGAGGGTGTCTCCTCTCTTCCGCTCCTG | + |
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Preference number: 3 (lower is better) Translates to: SSGVNLMEQSSS*TIEGVSSLPLL Trigger: CAGGAGCGGAAGAGAGGAGACACCCTCGATGGTCCAACTGGAGGACTGCTCCATCAGATTAACTCCAGATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR TCA 72 bp | TGCTTAGCTGAGCACAGGATGGCCACGCTCTGCAGATaGCCTCAAACCCCAGCCTTCTTGGTTTACTGGAAA | + |
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Preference number: 3 (lower is better) Translates to: CLAEHRMATLCR*PQTPAFLVYWK Trigger: TTTCCAGTAAACCAAGAAGGCTGGGGTTTGAGGTCATCTGCAGAGCGTGGCCATCCTGTGCTCAGCTAAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR GCA 72 bp | CACATCCCTGGCACCTCTTGGCCTTCACTTGTCCTATaGACTAGGGTTTCTCAGAGAAGACAGGGTGACCTT | + |
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Preference number: 3 (lower is better) Translates to: HIPGTSWPSLVL*TRVSQRRQGDL Trigger: AAGGTCACCCTGTCTTCTCTGAGAAACCCTAGTGCATAGGACAAGTGAAGGCCAAGAGGTGCCAGGGATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | ACAGAGGCAGGAGGATCTCTGAGTCCAAGTCCAGTTTaGTTTACAGAGCAGGTTCCAGGACAGCCAGAGCTA | + |
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Preference number: 3 (lower is better) Translates to: TEAGGSLSPSPV*FTEQVPGQPEL Trigger: TAGCTCTGGCTGTCCTGGAACCTGCTCTGTAAACCAAACTGGACTTGGACTCAGAGATCCTCCTGCCTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | TTTCCATGTCAAAGTCCGGGAAGGCAGGCTGGTCTCTaGTCTCCAGTTCAGGTCACAAATGAGCCCAGTCTT | + |
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Preference number: 3 (lower is better) Translates to: FPCQSPGRQAGL*SPVQVTNEPSL Trigger: AAGACTGGGCTCATTTGTGACCTGAACTGGAGACCAGAGACCAGCCTGCCTTCCCGGACTTTGACATGGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | TTCAGGAGGATACCGCTAATGCTCATTTTTGAGGAATaGATGGAGATCCACTCCCAGCGGACCAGGCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: FRRIPLMLIFEE*MEIHSQRTRLP Trigger: GGGAAGCCTGGTCCGCTGGGAGTGGATCTCCATCCATTCCTCAAAAATGAGCATTAGCGGTATCCTCCTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR GCA 72 bp | TCTTGGTTTACTGGAAACCCTGAGAACTTGTTAGTATaGGCAGTTCCGGGAACGAGGCACTGGGTCAGCTTC | + |
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Preference number: 3 (lower is better) Translates to: SWFTGNPENLLV*AVPGTRHWVSF Trigger: GAAGCTGACCCAGTGCCTCGTTCCCGGAACTGCGCATACTAACAAGTTCTCAGGGTTTCCAGTAAACCAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | GACCATGCAGTAGAGGCCAAGGGCATCAGAATCATTTaGGAACCCCTCAACAAACTCAGGGGATCTTTGACT | + |
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Preference number: 3 (lower is better) Translates to: DHAVEAKGIRII*EPLNKLRGSLT Trigger: AGTCAAAGATCCCCTGAGTTTGTTGAGGGGTTCCCAAATGATTCTGATGCCCTTGGCCTCTACTGCATGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | CCACGCTCTGCAGATGACCTCAAACCCCAGCCTTCTTaGTTTACTGGAAACCCTGAGAACTTGTTAGTATGC | + |
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Preference number: 3 (lower is better) Translates to: PRSADDLKPQPS*FTGNPENLLVC Trigger: GCATACTAACAAGTTCTCAGGGTTTCCAGTAAACCAAGAAGGCTGGGGTTTGAGGTCATCTGCAGAGCGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR TCA 72 bp | ACTTGTTTTCAGGAGGATACCGCTAATGCTCATTTTTaGGGAATGGATGGAGATCCACTCCCAGCGGACCAG | + |
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Preference number: 3 (lower is better) Translates to: TCFQEDTANAHF*GMDGDPLPADQ Trigger: CTGGTCCGCTGGGAGTGGATCTCCATCCATTCCTCAAAAATGAGCATTAGCGGTATCCTCCTGAAAACAAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR-3UTR CAA 90 bp | CTCAAACCCCAGCCTTCTTGGTTTACTGGAAACCCTGAGAACTTGTTAGTATGCAAACTCAGGGGATCTTaGACTGGGTGTCATCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LKPQPSWFTGNPENLLVCKLRGS*TGCHLV Trigger: AACCAGATGACACCCAGTCAAAGATCCCCTGAGTTT...GCATACTAACAAGTTCTCAGGGTTTCCAGTAAACCAAGAAGGCTGGGGTTTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR TCA 72 bp | CACGGTAGGCATTCTCTCTCGCTAGTTGTTAATTCATaGCTATTTCCAAGTACTAAGAGCAGGGGCTGTGCC | + |
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Preference number: 3 (lower is better) Translates to: HGRHSLSLVVNS*LFPSTKSRGCA Trigger: GGCACAGCCCCTGCTCTTAGTACTTGGAAATAGTCATGAATTAACAACTAGCGAGAGAGAATGCCTACCGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CCA 72 bp | TTCTGTGACTTATGCATGTCTTGTTTTCCCATCCTTTaGATTTCCATGTCAAAGTCCGGGAAGGCAGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: FCDLCMSCFPIL*ISMSKSGKAGW Trigger: CCAGCCTGCCTTCCCGGACTTTGACATGGAAATCCAAAGGATGGGAAAACAAGACATGCATAAGTCACAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR TCA 72 bp | CGGGCCCTTGTGCACATGGTAATTATGTACTTGGGATaGGTTCCTACAAGAGAAATGACTGCAAACAGACAC | + |
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Preference number: 3 (lower is better) Translates to: RALVHMVIMYLG*VPTREMTANRH Trigger: GTGTCTGTTTGCAGTCATTTCTCTTGTAGGAACTCATCCCAAGTACATAATTACCATGTGCACAAGGGCCCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR GCA 90 bp | TGGATTTCCATGTCAAAGTCCGGGAAGGCAGGCTGGTCTCTGGTCTCCAGTTCAGGTCCCGCAGGGCCCTaGCCGAGATGGGGCACTTGC | + |
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Preference number: 4 (lower is better) Translates to: WISMSKSGKAGWSLVSSSGPAGP*PRWGTC Trigger: GCAAGTGCCCCATCTCGGGCAGGGCCCTGCGGGACC...TGAACTGGAGACCAGAGACCAGCCTGCCTTCCCGGACTTTGACATGGAAATCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR CCA 90 bp | AACACAGAGGACCATCAGAGAGCCAGCAGCCAGCAGCTGAAATGTCGCCTGCCATACCAGGTCACACCGTaGCAGGCCCAGAACAGAGCG | + |
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Preference number: 4 (lower is better) Translates to: NTEDHQRASSQQLKCRLPYQVTP*QAQNRA Trigger: CGCTCTGTTCTGGGCCTGCCACGGTGTGACCTGGTA...TGGCAGGCGACATTTCAGCTGCTGGCTGCTGGCTCTCTGATGGTCCTCTGTGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165855.8 |
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| CDS-3UTR TCA 90 bp | AACACAGAGGACCATCAGAGAGCCAGCAGCCAGCAGCTGAAATGTCGCCTGCCAACCATGAAGAGATGGTaGGCCAGCAGCAGCCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: NTEDHQRASSQQLKCRLPTMKRW*ASSSQR Trigger: CCTCTGGCTGCTGCTGGCTCACCATCTCTTCATGGT...TGGCAGGCGACATTTCAGCTGCTGGCTGCTGGCTCTCTGATGGTCCTCTGTGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000165855.8 ENSMUST00000188475.7 |
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| CDS-3UTR TCA 90 bp | GAGGAGGTCACATCCCTGGCACCTCTTGGCCTTCACTTGTCCTATGCACTAGGGGGCACAGCTCCTGGATaGGAGTCCCATAGTCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: EEVTSLAPLGLHLSYALGGTAPG*ESHSQG Trigger: ACCCTGACTATGGGACTCTCATCCAGGAGCTGTGCC...CCCTAGTGCATAGGACAAGTGAAGGCCAAGAGGTGCCAGGGATGTGACCTCCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR TCA 90 bp | AACAGGAACACAGAGGACCATCAGAGAGCCAGCAGCCAGCAGCTGAAATGTCGCGGCACAGCTCCTGGATaGGAGTCCCATAGTCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: NRNTEDHQRASSQQLKCRGTAPG*ESHSQG Trigger: ACCCTGACTATGGGACTCTCATCCAGGAGCTGTGCC...GCGACATTTCAGCTGCTGGCTGCTGGCTCTCTGATGGTCCTCTGTGTTCCTGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000165855.8 ENSMUST00000188475.7 |
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| CDS-3UTR TCA 90 bp | GGATTTCCATGTCAAAGTCCGGGAAGGCAGGCTGGTCTCTGGTCTCCAGTTCAGGATGGTGGACAGCGATaGAGAATCTGTCCACTTCCG | + |
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Preference number: 4 (lower is better) Translates to: GFPCQSPGRQAGLWSPVQDGGQR*RICPLP Trigger: CGGAAGTGGACAGATTCTTCATCGCTGTCCACCATC...CTGAACTGGAGACCAGAGACCAGCCTGCCTTCCCGGACTTTGACATGGAAATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CAA 72 bp | GAGGAGGTCACATCCCTGGCACCTCTTGGCCTTCACTaGTCCTATGCACTAGGGTTTCTCAGAGAAGACAGG | + |
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Preference number: 4 (lower is better) Translates to: EEVTSLAPLGLH*SYALGFLREDR Trigger: CCTGTCTTCTCTGAGAAACCCTAGTGCATAGGACAAGTGAAGGCCAAGAGGTGCCAGGGATGTGACCTCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR GCA 90 bp | GACACTCAAGACTTCTGCTCCACACTTCTGACTTGTTTTCAGGAGGATACCGCTTGCCCTCTGTGCGCTTaGTCCTCCAGACCACCAGTG | + |
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Preference number: 4 (lower is better) Translates to: DTQDFCSTLLTCFQEDTACPLCA*SSRPPV Trigger: CACTGGTGGTCTGGAGGAGCAAGCGCACAGAGGGCA...AGCGGTATCCTCCTGAAAACAAGTCAGAAGTGTGGAGCAGAAGTCTTGAGTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR GCA 90 bp | GAACACAGAGGACCATCAGAGAGCCAGCAGCCAGCAGCTGAAATGTCGCCTGCCCCCGAAACTGCTTCCTaGAAACTTGTATGGTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: EHRGPSESQQPAAEMSPAPETAS*KLVWSF Trigger: GAAAGACCATACAAGTTTGCAGGAAGCAGTTTCGGG...GGCAGGCGACATTTCAGCTGCTGGCTGCTGGCTCTCTGATGGTCCTCTGTGTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000188475.7 |
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| CDS-3UTR TCA 90 bp | CTTCACTTGTCCTATGCACTAGGGTTTCTCAGAGAAGACAGGGTGACCTTTAGGACCATGAAGAGATGGTaGGCCAGCAGCAGCCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LHLSYALGFLREDRVTFRTMKRW*ASSSQR Trigger: CCTCTGGCTGCTGCTGGCTCACCATCTCTTCATGGT...CCTAAAGGTCACCCTGTCTTCTCTGAGAAACCCTAGTGCATAGGACAAGTGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR TCA 90 bp | AATCGTGCAGGAGAAATACTGACAACAGGAACACAGAGGACCATCAGAGAGCCAACCATGAAGAGATGGTaGGCCAGCAGCAGCCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: NRAGEILTTGTQRTIREPTMKRW*ASSSQR Trigger: CCTCTGGCTGCTGCTGGCTCACCATCTCTTCATGGT...TGGCTCTCTGATGGTCCTCTGTGTTCCTGTTGTCAGTATTTCTCCTGCACGATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000165855.8 ENSMUST00000188475.7 |
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| CDS-3UTR CCA 90 bp | AGAGGCAGGAGGATCTCTGAGTCCAAGTCCAGTTTGGTTTACAGAGCAGGTTCCTGTCCACTTCCGGATTaGGCCAGAAACAGCCAATCG | + |
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Preference number: 4 (lower is better) Translates to: RGRRISESKSSLVYRAGSCPLPD*ARNSQS Trigger: CGATTGGCTGTTTCTGGCCCAATCCGGAAGTGGACA...GGAACCTGCTCTGTAAACCAAACTGGACTTGGACTCAGAGATCCTCCTGCCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR CCA 90 bp | GGAGAAATACTGACAACAGGAACACAGAGGACCATCAGAGAGCCAGCAGCCAGCCATGCAGATCCTGTATaGTCTTTCCCCAGTCACACC | + |
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Preference number: 4 (lower is better) Translates to: GEILTTGTQRTIREPAASHADPV*SFPSHT Trigger: GGTGTGACTGGGGAAAGACCATACAGGATCTGCATG...GCTGGCTGCTGGCTCTCTGATGGTCCTCTGTGTTCCTGTTGTCAGTATTTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165855.8 |
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| 3UTR CAA 72 bp | GGACCATGCAGTAGAGGCCAAGGGCATCAGAATCATTaGGGAACCCCTCAACAAACTCAGGGGATCTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: GPCSRGQGHQNH*GTPQQTQGIFD Trigger: GTCAAAGATCCCCTGAGTTTGTTGAGGGGTTCCCAAATGATTCTGATGCCCTTGGCCTCTACTGCATGGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR CCA 90 bp | GACACTCAAGACTTCTGCTCCACACTTCTGACTTGTTTTCAGGAGGATACCGCTCCCCATAGCTCTGTATaGTCTTTCCCCAGTCACACC | + |
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Preference number: 4 (lower is better) Translates to: DTQDFCSTLLTCFQEDTAPHSSV*SFPSHT Trigger: GGTGTGACTGGGGAAAGACCATACAGAGCTATGGGG...AGCGGTATCCTCCTGAAAACAAGTCAGAAGTGTGGAGCAGAAGTCTTGAGTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CAA 72 bp | ATCATTTGGGAACCCCTCAACAAACTCAGGGGATCTTaGACTGGGTGTCATCTGGTTAGAGACCCTGCGATA | + |
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Preference number: 4 (lower is better) Translates to: IIWEPLNKLRGS*TGCHLVRDPAI Trigger: TATCGCAGGGTCTCTAACCAGATGACACCCAGTCAAAGATCCCCTGAGTTTGTTGAGGGGTTCCCAAATGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR CCA 90 bp | ACATATTTATATCTCAACAATAGGGGGAAACAGTATAGAAAGAGGGGGAACACCCGCATGCAGATCCCTTaGGGCAGGCATTCAGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: TYLYLNNRGKQYRKRGNTRMQIP*GRHSVC Trigger: GCACACTGAATGCCTGCCCCAAGGGATCTGCATGCG...GGTGTTCCCCCTCTTTCTATACTGTTTCCCCCTATTGTTGAGATATAAATATGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000188475.7 |
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| 3UTR CAA 72 bp | GTCAGCTTCATCTCCCAAGTCAGCTCCCTGGTTCTCTaGCAGCTTTTGGATTCTGTGACTTATGCATGTCTT | + |
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Preference number: 4 (lower is better) Translates to: VSFISQVSSLVL*QLLDSVTYACL Trigger: AAGACATGCATAAGTCACAGAATCCAAAAGCTGCAAGAGAACCAGGGAGCTGACTTGGGAGATGAAGCTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CAA 72 bp | AACTGTGCATCTACAAACACATCTGTGCAGTCTTCCTaGGAGTTCAGAATGCCCACAGTGGTGATGAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: NCASTNTSVQSS*EFRMPTVVMKC Trigger: ACACTTCATCACCACTGTGGGCATTCTGAACTCCAAGGAAGACTGCACAGATGTGTTTGTAGATGCACAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| 3UTR CAA 72 bp | ATCTCCCAAGTCAGCTCCCTGGTTCTCTTGCAGCTTTaGGATTCTGTGACTTATGCATGTCTTGTTTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: ISQVSSLVLLQL*DSVTYACLVFP Trigger: TGGGAAAACAAGACATGCATAAGTCACAGAATCCAAAAGCTGCAAGAGAACCAGGGAGCTGACTTGGGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR GCA 90 bp | GAGAAAACATATTTATATCTCAACAATAGGGGGAAACAGTATAGAAAGAGGGGGATTGCAGCCCGAAACTaGTTCCTGCAAACTTGTATG | + |
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Preference number: 4 (lower is better) Translates to: EKTYLYLNNRGKQYRKRGIAARN*FLQTCM Trigger: CATACAAGTTTGCAGGAAGCAGTTTCGGGCTGCAAT...CCCCCTCTTTCTATACTGTTTCCCCCTATTGTTGAGATATAAATATGTTTTCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000188475.7 |
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| CDS CCA 90 bp | TCCCGCAGGGCCCTGCCCGAGATGGGGCACTTGCTGAAGTATCGATaGTGGACAGCGATGAAGAATCTGTCCACTTCCGGATTGGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SRRALPEMGHLLKYR*WTAMKNLSTSGLGQ Trigger: CTGGCCCAATCCGGAAGTGGACAGATTCTTCATCGCTGTCCACCATCGATACTTCAGCAAGTGCCCCATCTCGGGCAGGGCCCTGCGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS GCA 90 bp | ACCAGGTCACACCGTGGCAGGCCCAGAACAGAGCGGGAGTGCGCATaGAGATCCTGTATGGTCTTTCCCCAGTCACACCATAGCGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: TRSHRGRPRTERECA*RSCMVFPQSHHSVF Trigger: GAAGACGCTATGGTGTGACTGGGGAAAGACCATACAGGATCTGCATGCGCACTCCCGCTCTGTTCTGGGCCTGCCACGGTGTGACCTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165855.8 |
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| CDS CCA 90 bp | CGCAGGGCCCTGCCCGAGATGGGGCACTTGCTGAAGTATCGATGGTaGACAGCGATGAAGAATCTGTCCACTTCCGGATTGGGCCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: RRALPEMGHLLKYRW*TAMKNLSTSGLGQK Trigger: TTTCTGGCCCAATCCGGAAGTGGACAGATTCTTCATCGCTGTCCACCATCGATACTTCAGCAAGTGCCCCATCTCGGGCAGGGCCCTGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS-3UTR CAA 90 bp | CCTTGTGCACATGGTAATTATGTACTTGGGATGAGTTCCTACAAGAGAAATGACGGGCAGAGGATGCTGTaGGGAGGGTCCCGCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: PCAHGNYVLGMSSYKRNDGQRML*GGSRRA Trigger: GGCCCTGCGGGACCCTCCCAACAGCATCCTCTGCCC...GTCATTTCTCTTGTAGGAACTCATCCCAAGTACATAATTACCATGTGCACAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS TCA 90 bp | GATCCCTTGGGGCAGGCATTCAGTGTGCAGCTAGCTGATCCCAACTaGAATGCCATTGCAGCCCGAAACTGCTTCCTGCAAACTTGTATG | + |
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Preference number: 5 (lower is better) Translates to: DPLGQAFSVQLADPN*NAIAARNCFLQTCM Trigger: CATACAAGTTTGCAGGAAGCAGTTTCGGGCTGCAATGGCATTTCAGTTGGGATCAGCTAGCTGCACACTGAATGCCTGCCCCAAGGGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188475.7 |
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| CDS GCA 72 bp | CACCGTGGCAGGCCCAGAACAGAGCGGGAGTGCGCATaGAGATCCCTTGGGGCAGGCATTCAGTGTGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: HRGRPRTERECA*RSLGAGIQCAA Trigger: AGCTGCACACTGAATGCCTGCCCCAAGGGATCTGCATGCGCACTCCCGCTCTGTTCTGGGCCTGCCACGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188475.7 |
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| CDS GCA 72 bp | GATGCCCTCTGTGCGCTTGCTCCTCCAGACCACCAGTaGAGTCATGAGCAGCGTGACCGTAATGGGGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: DALCALAPPDHQ*SHEQRDRNGER Trigger: GCGCTCCCCATTACGGTCACGCTGCTCATGACTGCACTGGTGGTCTGGAGGAGCAAGCGCACAGAGGGCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS GCA 72 bp | CACCGTGGCAGGCCCAGAACAGAGCGGGAGTGCGCATaGAGATCCTGTATGGTCTTTCCCCAGTCACACCAT | + |
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Preference number: 6 (lower is better) Translates to: HRGRPRTERECA*RSCMVFPQSHH Trigger: ATGGTGTGACTGGGGAAAGACCATACAGGATCTGCATGCGCACTCCCGCTCTGTTCTGGGCCTGCCACGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165855.8 |
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| CDS GCA 72 bp | AGGTCACACCGTGGCAGGCCCAGAACAGAGCGGGAGTaGGCATGCAGATCCTGTATGGTCTTTCCCCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: RSHRGRPRTERE*ACRSCMVFPQS Trigger: TGACTGGGGAAAGACCATACAGGATCTGCATGCGCACTCCCGCTCTGTTCTGGGCCTGCCACGGTGTGACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165855.8 |
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| CDS CAA 90 bp | ATGCTGTTGGGAGGGTCCCGCAGGGCCCTGCCCGAGATGGGGCACTaGCTGAAGTATCGATGGTGGACAGCGATGAAGAATCTGTCCACT | + |
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Preference number: 6 (lower is better) Translates to: MLLGGSRRALPEMGH*LKYRWWTAMKNLST Trigger: AGTGGACAGATTCTTCATCGCTGTCCACCATCGATACTTCAGCAAGTGCCCCATCTCGGGCAGGGCCCTGCGGGACCCTCCCAACAGCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS CCA 72 bp | GCCCTGCCCGAGATGGGGCACTTGCTGAAGTATCGATaGTGGACAGCGATGAAGAATCTGTCCACTTCCGGA | + |
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Preference number: 6 (lower is better) Translates to: ALPEMGHLLKYR*WTAMKNLSTSG Trigger: TCCGGAAGTGGACAGATTCTTCATCGCTGTCCACCATCGATACTTCAGCAAGTGCCCCATCTCGGGCAGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS TCA 72 bp | AGCCAATCGTGTGCGCCACGTGCTTGGTGCAGTAAGTaGGCTCCCCATAGCTCTGTATGGTCTTTCCCCAGT | + |
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Preference number: 6 (lower is better) Translates to: SQSCAPRAWCSK*APHSSVWSFPS Trigger: ACTGGGGAAAGACCATACAGAGCTATGGGGAGCTCACTTACTGCACCAAGCACGTGGCGCACACGATTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS CCA 72 bp | CCAGAACAGAGCGGGAGTGCGCATGCAGATCCTGTATaGTCTTTCCCCAGTCACACCATAGCGTCTTCCCAA | + |
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Preference number: 6 (lower is better) Translates to: PEQSGSAHADPV*SFPSHTIASSQ Trigger: TTGGGAAGACGCTATGGTGTGACTGGGGAAAGACCATACAGGATCTGCATGCGCACTCCCGCTCTGTTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165855.8 |
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| CDS TCA 72 bp | GGGCAGGCATTCAGTGTGCAGCTAGCTGATCCCAACTaGAATGCCATTGCAGCCCGAAACTGCTTCCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: GQAFSVQLADPN*NAIAARNCFLQ Trigger: TTGCAGGAAGCAGTTTCGGGCTGCAATGGCATTTCAGTTGGGATCAGCTAGCTGCACACTGAATGCCTGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188475.7 |
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| CDS CCA 72 bp | CTGCCCGAGATGGGGCACTTGCTGAAGTATCGATGGTaGACAGCGATGAAGAATCTGTCCACTTCCGGATTG | + |
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Preference number: 6 (lower is better) Translates to: LPEMGHLLKYRW*TAMKNLSTSGL Trigger: CAATCCGGAAGTGGACAGATTCTTCATCGCTGTCCACCATCGATACTTCAGCAAGTGCCCCATCTCGGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097648.6 |
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| CDS CAA 72 bp | CACCATAGCGTCTTCCCAATAGTCTCCATGTTCTCCTaGAAGCGGCTGAGGCACAGCTCCTGGATGAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: HHSVFPIVSMFS*KRLRHSSWMRV Trigger: GACTCTCATCCAGGAGCTGTGCCTCAGCCGCTTCAAGGAGAACATGGAGACTATTGGGAAGACGCTATGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097648.6 ENSMUST00000165855.8 ENSMUST00000188475.7 |
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