Pregenerated sensors for RAMAC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038646Ensembl transcript IDs: ENSMUST00000042166.11, ENSMUST00000118190.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCTACCATCCCACCCTCCACCGCCTCAGGAGGCTGCACAGAAAATaGGCCCTTCCATATAGGACCAAAGCAGTTCTGGAGCTGACTCAC | + |
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Preference number: 1 (lower is better) Translates to: CYHPTLHRLRRLHRK*ALPYRTKAVLELTH Trigger: GTGAGTCAGCTCCAGAACTGCTTTGGTCCTATATGGAAGGGCTCATTTTCTGTGCAGCCTCCTGAGGCGGTGGAGGGTGGGATGGTAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| 3UTR GCA 90 bp | AAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCAGGAGGCTaGACAGAAAATGAGCCCTTCCATATAGGACCAAAGCAGTTCTGG | + |
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Preference number: 1 (lower is better) Translates to: KMLSATIPPSTASGG*TENEPFHIGPKQFW Trigger: CCAGAACTGCTTTGGTCCTATATGGAAGGGCTCATTTTCTGTGCAGCCTCCTGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| 3UTR GCA 90 bp | CTTGTTGTAAGTTTACAAAAATCTTGGGATATACAAAATGTTGAGTaGTACCATCCCACCCTCCACCGCCTCAGGAGGCTGCACAGAAAA | + |
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Preference number: 1 (lower is better) Translates to: LVVSLQKSWDIQNVE*YHPTLHRLRRLHRK Trigger: TTTTCTGTGCAGCCTCCTGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATTTTTGTAAACTTACAACAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| 3UTR CCA 90 bp | ACAGCGCACATCCATGTCTTCCTTGTTGTAAGTTTACAAAAATCTTaGGATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGC | + |
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Preference number: 1 (lower is better) Translates to: TAHIHVFLVVSLQKS*DIQNVECYHPTLHR Trigger: GCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATTTTTGTAAACTTACAACAAGGAAGACATGGATGTGCGCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| 3UTR-3UTR TCA 90 bp | GGAGGCTGCACAGAAAATGAGCCCTTCCATATAGGACCAAAGCAGTTCTGGAGCGAAACACTTCAGAGGTaGGCACGTGTGAGCATGCTA | + |
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Preference number: 2 (lower is better) Translates to: GGCTENEPFHIGPKQFWSETLQR*ARVSML Trigger: TAGCATGCTCACACGTGCTCACCTCTGAAGTGTTTC...GCTCCAGAACTGCTTTGGTCCTATATGGAAGGGCTCATTTTCTGTGCAGCCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| 3UTR-3UTR TCA 90 bp | AATCTTGGGATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCAGAAACACTTCAGAGGTaGGCACGTGTGAGCATGCTA | + |
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Preference number: 2 (lower is better) Translates to: NLGIYKMLSATIPPSTASETLQR*ARVSML Trigger: TAGCATGCTCACACGTGCTCACCTCTGAAGTGTTTC...TGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| 3UTR TCA 72 bp | CCCACCCTCCACCGCCTCAGGAGGCTGCACAGAAAATaGGCCCTTCCATATAGGACCAAAGCAGTTCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: PTLHRLRRLHRK*ALPYRTKAVLE Trigger: CTCCAGAACTGCTTTGGTCCTATATGGAAGGGCTCATTTTCTGTGCAGCCTCCTGAGGCGGTGGAGGGTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| 3UTR GCA 72 bp | AGTGCTACCATCCCACCCTCCACCGCCTCAGGAGGCTaGACAGAAAATGAGCCCTTCCATATAGGACCAAAG | + |
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Preference number: 3 (lower is better) Translates to: SATIPPSTASGG*TENEPFHIGPK Trigger: CTTTGGTCCTATATGGAAGGGCTCATTTTCTGTGCAGCCTCCTGAGGCGGTGGAGGGTGGGATGGTAGCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| 3UTR GCA 72 bp | AGTTTACAAAAATCTTGGGATATACAAAATGTTGAGTaGTACCATCCCACCCTCCACCGCCTCAGGAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: SLQKSWDIQNVE*YHPTLHRLRRL Trigger: CAGCCTCCTGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATTTTTGTAAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| 3UTR TCA 72 bp | GAGCCCTTCCATATAGGACCAAAGCAGTTCTGGAGCTaGCTCACTTATAAACCACAAGACACCATGATCACA | + |
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Preference number: 3 (lower is better) Translates to: EPFHIGPKQFWS*LTYKPQDTMIT Trigger: TGTGATCATGGTGTCTTGTGGTTTATAAGTGAGTCAGCTCCAGAACTGCTTTGGTCCTATATGGAAGGGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CCA 90 bp | GGAGGCTGCACAGAAAATGAGCCCTTCCATATAGGACCAAAGCAGTTCTGGAGCTTGATAGTAGGGCTCTaGTCTCTGCTGTGGGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: GGCTENEPFHIGPKQFWSLIVGL*SLLWVV Trigger: AACTACCCACAGCAGAGACCAGAGCCCTACTATCAA...GCTCCAGAACTGCTTTGGTCCTATATGGAAGGGCTCATTTTCTGTGCAGCCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CCA 90 bp | AATCTTGGGATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCACTCTGGTCTCTGCTGTaGGTAGTTGTTGTTACCCCA | + |
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Preference number: 4 (lower is better) Translates to: NLGIYKMLSATIPPSTASLWSLL*VVVVTP Trigger: TGGGGTAACAACAACTACCCACAGCAGAGACCAGAG...TGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR TCA 90 bp | ATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCAGGAGGCTGCCTTTGTCATCTTTCGTaGATCTGCTTGCAAACATCT | + |
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Preference number: 4 (lower is better) Translates to: IYKMLSATIPPSTASGGCLCHLS*ICLQTS Trigger: AGATGTTTGCAAGCAGATTCACGAAAGATGACAAAG...GCAGCCTCCTGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR GCA 90 bp | GGAGGCTGCACAGAAAATGAGCCCTTCCATATAGGACCAAAGCAGTTCTGGAGCTGTCTTGCAGCCAGTTaGCTCTATTTCTTTGGTTAC | + |
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Preference number: 4 (lower is better) Translates to: GGCTENEPFHIGPKQFWSCLAAS*LYFFGY Trigger: GTAACCAAAGAAATAGAGGCAACTGGCTGCAAGACA...GCTCCAGAACTGCTTTGGTCCTATATGGAAGGGCTCATTTTCTGTGCAGCCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CCA 90 bp | AATCTTGGGATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCATTGATAGTAGGGCTCTaGTCTCTGCTGTGGGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: NLGIYKMLSATIPPSTASLIVGL*SLLWVV Trigger: AACTACCCACAGCAGAGACCAGAGCCCTACTATCAA...TGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR GCA 90 bp | AAATCTTGGGATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCTGTCTTGCAGCCAGTTaGCTCTATTTCTTTGGTTAC | + |
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Preference number: 4 (lower is better) Translates to: KSWDIQNVECYHPTLHRLCLAAS*LYFFGY Trigger: GTAACCAAAGAAATAGAGGCAACTGGCTGCAAGACA...GAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR TCA 90 bp | AATCTTGGGATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCACTTTGTCATCTTTCGTaGATCTGCTTGCAAACATCT | + |
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Preference number: 4 (lower is better) Translates to: NLGIYKMLSATIPPSTASLCHLS*ICLQTS Trigger: AGATGTTTGCAAGCAGATTCACGAAAGATGACAAAG...TGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CCA 90 bp | CAACTGAACTGTGGTTCAATTACTTTAAGTAATTGTGGGTGTGTTTTCACAGACCTCTGGTCTCTGCTGTaGGTAGTTGTTGTTACCCCA | + |
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Preference number: 4 (lower is better) Translates to: QLNCGSITLSNCGCVFTDLWSLL*VVVVTP Trigger: TGGGGTAACAACAACTACCCACAGCAGAGACCAGAG...GTCTGTGAAAACACACCCACAATTACTTAAAGTAATTGAACCACAGTTCAGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CAA 90 bp | ATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCAGGAGGCTGCTATGGAGGCCGCTGGTaGTGGCCATACTGTGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: IYKMLSATIPPSTASGGCYGGRW*WPYCVY Trigger: GTACACACAGTATGGCCACAACCAGCGGCCTCCATA...GCAGCCTCCTGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CAA 90 bp | AATCTTGGGATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCATATGGAGGCCGCTGGTaGTGGCCATACTGTGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: NLGIYKMLSATIPPSTASYGGRW*WPYCVY Trigger: GTACACACAGTATGGCCACAACCAGCGGCCTCCATA...TGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CAA 90 bp | GGAGGCTGCACAGAAAATGAGCCCTTCCATATAGGACCAAAGCAGTTCTGGAGCAAATTGTCTGTTGTCTaGCAGCCAGTTGCCTCTATT | + |
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Preference number: 5 (lower is better) Translates to: GGCTENEPFHIGPKQFWSKLSVV*QPVASI Trigger: AATAGAGGCAACTGGCTGCAAGACAACAGACAATTT...GCTCCAGAACTGCTTTGGTCCTATATGGAAGGGCTCATTTTCTGTGCAGCCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CAA 90 bp | AATCTTGGGATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCACCTCTAAATTGTCTGTaGTCTTGCAGCCAGTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: NLGIYKMLSATIPPSTASPLNCL*SCSQLP Trigger: AGGCAACTGGCTGCAAGACAACAGACAATTTAGAGG...TGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CAA 90 bp | ATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCAGGAGGCTGCTATTCCTGGTATTCTTaGTCATCTTTCGTGAATCTG | + |
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Preference number: 5 (lower is better) Translates to: IYKMLSATIPPSTASGGCYSWYS*SSFVNL Trigger: CAGATTCACGAAAGATGACAAAGAATACCAGGAATA...GCAGCCTCCTGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CAA 90 bp | GGAGGCTGCACAGAAAATGAGCCCTTCCATATAGGACCAAAGCAGTTCTGGAGCTATTCCTGGTATTCTTaGTCATCTTTCGTGAATCTG | + |
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Preference number: 5 (lower is better) Translates to: GGCTENEPFHIGPKQFWSYSWYS*SSFVNL Trigger: CAGATTCACGAAAGATGACAAAGAATACCAGGAATA...GCTCCAGAACTGCTTTGGTCCTATATGGAAGGGCTCATTTTCTGTGCAGCCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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| CDS-3UTR CAA 90 bp | AATCTTGGGATATACAAAATGTTGAGTGCTACCATCCCACCCTCCACCGCCTCAAAATTGTCTGTTGTCTaGCAGCCAGTTGCCTCTATT | + |
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Preference number: 5 (lower is better) Translates to: NLGIYKMLSATIPPSTASKLSVV*QPVASI Trigger: AATAGAGGCAACTGGCTGCAAGACAACAGACAATTT...TGAGGCGGTGGAGGGTGGGATGGTAGCACTCAACATTTTGTATATCCCAAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042166.11 ENSMUST00000118190.2 |
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