RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RALGAPA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021027

Ensembl transcript IDs: ENSMUST00000085385.7, ENSMUST00000110687.8, ENSMUST00000219323.2, ENSMUST00000219432.2, ENSMUST00000220367.2, ENSMUST00000226244.2

Found 289 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTaGCGCTATCACCTGCACTGCCCAGAAATGAGATACCAACTTGGG +
Preference number: 1 (lower is better)
Translates to: TEIKGQWWASWVLSM*RYHLHCPEMRYQLG
Trigger: CCCAAGTTGGTATCTCATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR CCA 90 bp TACCAACTTGGGAAGAAAATGTTACCACATGTAAGTAATTTCAGTTaGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGT +
Preference number: 1 (lower is better)
Translates to: YQLGKKMLPHVSNFS*NLSCCTAIRSVSLC
Trigger: ACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACATTTTCTTCCCAAGTTGGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR GCA 90 bp AAAATGTTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTaGACTGCCATTAGGAGTGTTTCTCTCTGTAACACAAATACTCTG +
Preference number: 1 (lower is better)
Translates to: KMLPHVSNFSWNLSC*TAIRSVSLCNTNTL
Trigger: CAGAGTATTTGTGTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR CCA 90 bp TGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAGTCTACCTGTGCTGCTaGGGCAGCGTCACTGGGTGG +
Preference number: 2 (lower is better)
Translates to: WWASWVLSMCRYHLHCPEVYLCC*GSVTGW
Trigger: CCACCCAGTGACGCTGCCCCAGCAGCACAGGTAGAC...TTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
3UTR-3UTR TCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGATTTCAGTTGGAATCTaGGCTGCTGCACTGCCATTA +
Preference number: 2 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMISVGI*AAALPL
Trigger: TAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAAT...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR GCA 90 bp GGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCATGTGACAAACAGATGTaGAGCTTTGCTCTAGCTCTC +
Preference number: 2 (lower is better)
Translates to: GNQRSVVGFLGTEYVPLSCDKQM*SFALAL
Trigger: GAGAGCTAGAGCAAAGCTGCACATCTGTTTGTCACA...TGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR CCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATAGTCTACCTGTGCTGCTaGGGCAGCGTCACTGGGTGG +
Preference number: 2 (lower is better)
Translates to: HTGINWSIIKDHSLKTEIVYLCC*GSVTGW
Trigger: CCACCCAGTGACGCTGCCCCAGCAGCACAGGTAGAC...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
3UTR-3UTR TCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTGTGTACAGCCTATGTaGCAAACAGATGTGCAGCTT +
Preference number: 2 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGCVQPM*QTDVQL
Trigger: AAGCTGCACATCTGTTTGTCACATAGGCTGTACACA...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR GCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCGCTATCACCTGCACTaGCCAGAAATGAGATACCAA +
Preference number: 2 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVRYHLH*PEMRYQ
Trigger: TTGGTATCTCATTTCTGGGCAGTGCAGGTGATAGCG...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR TCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGTGTGTACAGCCTATGTaGCAAACAGATGTGCAGCTT +
Preference number: 2 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVCVQPM*QTDVQL
Trigger: AAGCTGCACATCTGTTTGTCACATAGGCTGTACACA...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR GCA 90 bp GAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCCGCTATCACCTGCACTaGCCAGAAATGAGATACCAA +
Preference number: 2 (lower is better)
Translates to: ETAYLLQEILLEVGCIPTRYHLH*PEMRYQ
Trigger: TTGGTATCTCATTTCTGGGCAGTGCAGGTGATAGCG...GGTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR GCA 90 bp GAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCTGTGACAAACAGATGTaGAGCTTTGCTCTAGCTCTC +
Preference number: 2 (lower is better)
Translates to: ETAYLLQEILLEVGCIPTCDKQM*SFALAL
Trigger: GAGAGCTAGAGCAAAGCTGCACATCTGTTTGTCACA...GGTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR CCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGGTAAGTAATTTCAGTTaGAATCTGAGCTGCTGCACT +
Preference number: 2 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGVSNFS*NLSCCT
Trigger: AGTGCAGCAGCTCAGATTCCAACTGAAATTACTTAC...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR TCA 90 bp CTGCACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTATGTGTACAGCCTATGTaGCAAACAGATGTGCAGCTT +
Preference number: 2 (lower is better)
Translates to: LHCPEMRYQLGKKMLPHVCVQPM*QTDVQL
Trigger: AAGCTGCACATCTGTTTGTCACATAGGCTGTACACA...TACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR TCA 90 bp CTGCACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAATTTCAGTTGGAATCTaGGCTGCTGCACTGCCATTA +
Preference number: 2 (lower is better)
Translates to: LHCPEMRYQLGKKMLPHVISVGI*AAALPL
Trigger: TAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAAT...TACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR CCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTAATGAGATACCAACTTaGGAAGAAAATGTTACCACA +
Preference number: 2 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSNEIPT*EENVTT
Trigger: TGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATT...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR TCA 72 bp CGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTaGGTATGTGCCGCTATCACCTGCACTGCCCAGAAA +
Preference number: 3 (lower is better)
Translates to: RKSKVSGGLPGY*VCAAITCTAQK
Trigger: TTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR GCA 72 bp AAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTaGCGCTATCACCTGCACTGCCCAGAAATGAGATAC +
Preference number: 3 (lower is better)
Translates to: KGQWWASWVLSM*RYHLHCPEMRY
Trigger: GTATCTCATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR CAA 90 bp GGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCAGCTTGCCTAGCATGCTaGGGATACTGGCTTCTATTC +
Preference number: 3 (lower is better)
Translates to: GNQRSVVGFLGTEYVPLSACLAC*GYWLLF
Trigger: GAATAGAAGCCAGTATCCCAAGCATGCTAGGCAAGC...TGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR GCA 72 bp AAATGTGTAGCACTGGGCTGTGAAGGACAGTGTGCTTaGCTAGCATGCTTGGGATACTGGCTTCTATTCCCA +
Preference number: 3 (lower is better)
Translates to: KCVALGCEGQCA*LACLGYWLLFP
Trigger: TGGGAATAGAAGCCAGTATCCCAAGCATGCTAGGCAAGCACACTGTCCTTCACAGCCCAGTGCTACACATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR-3UTR CAA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACGCTTGCCTAGCATGCTaGGGATACTGGCTTCTATTC +
Preference number: 3 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNACLAC*GYWLLF
Trigger: GAATAGAAGCCAGTATCCCAAGCATGCTAGGCAAGC...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR TCA 72 bp CTCTCTGTAACACAAATACTCTGTGTACAGCCTATGTaGCAAACAGATGTGCAGCTTTGCTCTAGCTCTCTA +
Preference number: 3 (lower is better)
Translates to: LSVTQILCVQPM*QTDVQLCSSSL
Trigger: TAGAGAGCTAGAGCAAAGCTGCACATCTGTTTGTCACATAGGCTGTACACAGAGTATTTGTGTTACAGAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR GCA 72 bp CCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTaGACTGCCATTAGGAGTGTTTCTCTCTGTAACACA +
Preference number: 3 (lower is better)
Translates to: PHVSNFSWNLSC*TAIRSVSLCNT
Trigger: TGTGTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
3UTR CCA 72 bp GGGAAGAAAATGTTACCACATGTAAGTAATTTCAGTTaGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTT +
Preference number: 3 (lower is better)
Translates to: GKKMLPHVSNFS*NLSCCTAIRSV
Trigger: AACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACATTTTCTTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGGATGGGGAGGGGGTCTaGGACCTGGATCCCAGAGCT +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMDGEGV*DLDPRA
Trigger: AGCTCTGGGATCCAGGTCGCAGACCCCCTCCCCATC...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGGTCTACCTGTGCTGCTaGGGCAGCGTCACTGGGTGG +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQVYLCC*GSVTGW
Trigger: CCACCCAGTGACGCTGCCCCAGCAGCACAGGTAGAC...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGAGGTCATCCGGCGTCTaGAGAACAGAGTGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMRSSGV*RTEWWS
Trigger: GCTCCACCACTCTGTTCTTCAGACGCCGGATGACCT...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp GTCAGCCCCGTCTACCTGTGCTGCTGGGGCAGCGTCACTGGGTGGAATCTCTGGCTCTCCATCTTCTATTaGACTGTCATGGTCTGCAAC +
Preference number: 4 (lower is better)
Translates to: VSPVYLCCWGSVTGWNLWLSIFY*TVMVCN
Trigger: GTTGCAGACCATGACAGTGCAATAGAAGATGGAGAG...CCAGAGATTCCACCCAGTGACGCTGCCCCAGCAGCACAGGTAGACGGGGCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
CDS-3UTR GCA 90 bp CTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGGATGGGGAGGGGGTCTaGGACCTGGATCCCAGAGCT +
Preference number: 4 (lower is better)
Translates to: LNGNQRSVVGFLGTEYVPDGEGV*DLDPRA
Trigger: AGCTCTGGGATCCAGGTCGCAGACCCCCTCCCCATC...CGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp GTCAGCCCCGTCTACCTGTGCTGCTGGGGCAGCGTCACTGGGTGGAATCTCTGGTGTGTCTCTCGGCATTaGCTTGAATCCAAGTTCCTA +
Preference number: 4 (lower is better)
Translates to: VSPVYLCCWGSVTGWNLWCVSRH*LESKFL
Trigger: TAGGAACTTGGATTCAAGGCAATGCCGAGAGACACA...CCAGAGATTCCACCCAGTGACGCTGCCCCAGCAGCACAGGTAGACGGGGCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
CDS-3UTR CCA 90 bp GCGAGGCCTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGTGGGGATCTCTGTaGATTCCCTCACTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: ARPERVNTTADQGGYCCSLWGSL*IPSLLC
Trigger: GCAGAGCAGTGAGGGAATCCACAGAGATCCCCACAG...TGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAGGCCTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGCAGGGAGCCCTGCTGTaGTCCTGTCTCCTGACTCGA +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEQGALL*SCLLTR
Trigger: TCGAGTCAGGAGACAGGACCACAGCAGGGCTCCCTG...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp GCGAGGCCTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCAGGGGGAAGCACTTTCTaGACCAGTAACGGTTGCAAC +
Preference number: 4 (lower is better)
Translates to: ARPERVNTTADQGGYCCSGGSTF*TSNGCN
Trigger: GTTGCAACCGTTACTGGTTCAGAAAGTGCTTCCCCC...TGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAGGCCTCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGGCTACTTCGAGGCAGTaGCTGTTCCTCATGCAAAGC +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMATSRQ*LFLMQS
Trigger: GCTTTGCATGAGGAACAGCCACTGCCTCGAAGTAGC...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAAATGCACAGAGGCTGTaGAGCAGGAACATTGAGGGA +
Preference number: 4 (lower is better)
Translates to: WWASWVLSMCRYHLHCPENAQRL*SRNIEG
Trigger: TCCCTCAATGTTCCTGCTCCACAGCCTCTGTGCATT...TTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAGAACACCTTCCCGTCTaGTCTTTAAGGAGTTTCCTG +
Preference number: 4 (lower is better)
Translates to: WWASWVLSMCRYHLHCPEEHLPV*SLRSFL
Trigger: CAGGAAACTCCTTAAAGATCAGACGGGAAGGTGTTC...TTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAACAGATGGAAATTCACTaGTTTCTAGGTCATCCGGCG +
Preference number: 4 (lower is better)
Translates to: WWASWVLSMCRYHLHCPEQMEIH*FLGHPA
Trigger: CGCCGGATGACCTAGAAATCAGTGAATTTCCATCTG...TTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGGTCTGTACCACTAGTTaGGCTGGTCTGTGTGTTGCT +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMVCTTS*AGLCVA
Trigger: AGCAACACACAGACCAGCTCAACTAGTGGTACAGAC...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp GAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCGATGGGGAGGGGGTCTaGGACCTGGATCCCAGAGCT +
Preference number: 4 (lower is better)
Translates to: ETAYLLQEILLEVGCIPTDGEGV*DLDPRA
Trigger: AGCTCTGGGATCCAGGTCGCAGACCCCCTCCCCATC...GGTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp GCGAGGCCTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCATTTCGTCCCTCACACTaGAAGGCACTGAAGGAATCC +
Preference number: 4 (lower is better)
Translates to: ARPERVNTTADQGGYCCSFRPSH*KALKES
Trigger: GGATTCCTTCAGTGCCTTCCAGTGTGAGGGACGAAA...TGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAGGCCTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGTTTCGTCCCTCACACTaGAAGGCACTGAAGGAATCC +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMFRPSH*KALKES
Trigger: GGATTCCTTCAGTGCCTTCCAGTGTGAGGGACGAAA...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp GCGAGGCCTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCATCTGTTCTGCCTCTGTaGGGAAACATTTGCCTTCGG +
Preference number: 4 (lower is better)
Translates to: ARPERVNTTADQGGYCCSSVLPL*GNICLR
Trigger: CCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGA...TGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAGGCCTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGCATTCCTTCTTTCTGTaGTGTGGCTGTGGGGATCTC +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQHSFFL*CGCGDL
Trigger: GAGATCCCCACAGCCACATCACAGAAAGAAGGAATG...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGAAGTGCTACACATCGTaGAGGACCAGAGGGCTCATC +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEKCYTS*RTRGLI
Trigger: GATGAGCCCTCTGGTCCTGCACGATGTGTAGCACTT...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp TCAGATAAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAGTGCTACACATCGTaGAGGACCAGAGGGCTCATC +
Preference number: 4 (lower is better)
Translates to: SDKRTGRSMSVMANTRGLKCYTS*RTRGLI
Trigger: GATGAGCCCTCTGGTCCTGCACGATGTGTAGCACTT...CAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTTATCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp GGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCAAAGTGCTACACATCGTaGAGGACCAGAGGGCTCATC +
Preference number: 4 (lower is better)
Translates to: GNQRSVVGFLGTEYVPLSKCYTS*RTRGLI
Trigger: GATGAGCCCTCTGGTCCTGCACGATGTGTAGCACTT...TGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp GGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCAGTCAACGACAGGAACTaGACCTTTGGCTCGCTCAAC +
Preference number: 4 (lower is better)
Translates to: GNQRSVVGFLGTEYVPLSVNDRN*TFGSLN
Trigger: GTTGAGCGAGCCAAAGGTGCAGTTCCTGTCGTTGAC...TGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGGCTACTTCGAGGCAGTaGCTGTTCCTCATGCAAAGC +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEATSRQ*LFLMQS
Trigger: GCTTTGCATGAGGAACAGCCACTGCCTCGAAGTAGC...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTGTCTACCTGTGCTGCTaGGGCAGCGTCACTGGGTGG +
Preference number: 4 (lower is better)
Translates to: NFSWNLSCCTAIRSVSLCVYLCC*GSVTGW
Trigger: CCACCCAGTGACGCTGCCCCAGCAGCACAGGTAGAC...ACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGTCTGTGATGTGGCTGTaGGGATCTCTGTGGATTCCC +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKESVMWL*GSLWIP
Trigger: GGGAATCCACAGAGATCCCCACAGCCACATCACAGA...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGCACACTGGAAGGCACTaGAGGAATCCGAGTGACTAT +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEHTGRH*RNPSDY
Trigger: ATAGTCACTCGGATTCCTTCAGTGCCTTCCAGTGTG...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGGTGCTTCTGTTCTTCTaGAGGCCTCCCATGAAGCCA +
Preference number: 4 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGVLLFF*RPPMKP
Trigger: TGGCTTCATGGGAGGCCTTCAGAAGAACAGAAGCAC...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGAGTGGATCTAGTTATTaGCGAAGCCTCTGTGGAACT +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMSGSSY*RSLCGT
Trigger: AGTTCCACAGAGGCTTCGTCAATAACTAGATCCACT...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGTACTATGAGTATCAGTaGGGTGGCTCTCAGTGGATC +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQYYEYQ*GGSQWI
Trigger: GATCCACTGAGAGCCACCTCACTGATACTCATAGTA...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGAAGTGCTACACATCGTaGAGGACCAGAGGGCTCATC +
Preference number: 4 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGKCYTS*RTRGLI
Trigger: GATGAGCCCTCTGGTCCTGCACGATGTGTAGCACTT...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp AATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGAGTGGTCAGTCCAGTaGTTCTGTTCTTCTGAAGGC +
Preference number: 4 (lower is better)
Translates to: NQRSVVGFLGTEYVPLSPEWSVQ*FCSSEG
Trigger: GCCTTCAGAAGAACAGAAGCACTGGACTGACCACTC...AGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGAGCTGGTCTGTGTGTTaGTGGTGGTGCTACTGCTAT +
Preference number: 4 (lower is better)
Translates to: LNGNQRSVVGFLGTEYVPSWSVC*WWCYCY
Trigger: ATAGCAGTAGCACCACCAGCAACACACAGACCAGCT...CGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGCTGTGGGGAAACATTTaGCTTCGGCTTCGAAAGAGC +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKELWGNI*LRLRKS
Trigger: GCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAG...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGTCTATTGCACTGTCATaGTCTGCAACAGTTTCGCTG +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMSIALS*SATVSL
Trigger: CAGCGAAACTGTTGCAGACCATGACAGTGCAATAGA...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGATTTCAAGGCTGCCTaGACTACTCCCCCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: NQRSVVGFLGTEYVPLSPDFKAA*TTPPSC
Trigger: ACAAGAAGGGGGAGTAGTCCAGGCAGCCTTGAAATC...AGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGGATTTCAAGGCTGCCTaGACTACTCCCCCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEDFKAA*TTPPSC
Trigger: ACAAGAAGGGGGAGTAGTCCAGGCAGCCTTGAAATC...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTAATGCACAGAGGCTGTaGAGCAGGAACATTGAGGGA +
Preference number: 4 (lower is better)
Translates to: NQRSVVGFLGTEYVPLSPNAQRL*SRNIEG
Trigger: TCCCTCAATGTTCCTGCTCCACAGCCTCTGTGCATT...AGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCAGTGGAGCCTCGGGTaGCATTCTGTTCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNQWSLG*HSVLPL
Trigger: CAGAGGCAGAACAGAATGCCACCCGAGGCTCCACTG...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGCTAGCAGCTGCTCTCTaGATATTCTTTGGCAAGACT +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQLAAAL*IFFGKT
Trigger: AGTCTTGCCAAAGAATATTCAGAGAGCAGCTGCTAG...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGGTATATCTGAACAAGTaGTCGCAGTGTCCTCAGGCT +
Preference number: 4 (lower is better)
Translates to: LNGNQRSVVGFLGTEYVPVYLNK*SQCPQA
Trigger: AGCCTGAGGACACTGCGATCACTTGTTCAGATATAC...CGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGGCAACAATGAGAGTCTaGAAAAGTGGTCCTGCAAGT +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQATMRV*KSGPAS
Trigger: ACTTGCAGGACCACTTTTTCAGACTCTCATTGTTGC...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp GCGAGGCCTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCAGCAGTAATAAAAAGCTaGCTGAGGTTTCTGAGGTGT +
Preference number: 4 (lower is better)
Translates to: ARPERVNTTADQGGYCCSAVIKS*LRFLRC
Trigger: ACACCTCAGAAACCTCAGTCAGCTTTTTATTACTGC...TGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAGGCCTCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGCTAGTGTTTGAAACATaGGGCATTCTGCGGCTTACC +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKELVFET*GILRLT
Trigger: GGTAAGCCGCAGAATGCCTCATGTTTCAAACACTAG...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGGGTCTTATCATTTTCTaGTCCTGTAGCATGGACTGG +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQGLIIF*SCSMDW
Trigger: CCAGTCCATGCTACAGGAGCAGAAAATGATAAGACC...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGGAGTGGTCAGTCCAGTaGTTCTGTTCTTCTGAAGGC +
Preference number: 4 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGEWSVQ*FCSSEG
Trigger: GCCTTCAGAAGAACAGAAGCACTGGACTGACCACTC...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTTTCGTCCCTCACACTaGAAGGCACTGAAGGAATCC +
Preference number: 4 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGFRPSH*KALKES
Trigger: GGATTCCTTCAGTGCCTTCCAGTGTGAGGGACGAAA...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTTGACGAAGCCTCTGTaGAACTCTGCAAGCTTGGAG +
Preference number: 4 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGLTKPL*NSASLE
Trigger: CTCCAAGCTTGCAGAGTTCCACAGAGGCTTCGTCAA...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCGTACAGATCCCTCAGTaGAGCCTCGGGTGGCATTCT +
Preference number: 4 (lower is better)
Translates to: QNKVVWKLNGNQRSVVGFVQIPQ*SLGWHS
Trigger: AGAATGCCACCCGAGGCTCCACTGAGGGATCTGTAC...GAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp GGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACTAGCAGCTGCTCTCTaGATATTCTTTGGCAAGACT +
Preference number: 4 (lower is better)
Translates to: GNQRSVVGFLGTEYVPLSLAAAL*IFFGKT
Trigger: AGTCTTGCCAAAGAATATTCAGAGAGCAGCTGCTAG...TGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TCAGATAAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGCTAGCAGCTGCTCTCTaGATATTCTTTGGCAAGACT +
Preference number: 4 (lower is better)
Translates to: SDKRTGRSMSVMANTRGLLAAAL*IFFGKT
Trigger: AGTCTTGCCAAAGAATATTCAGAGAGCAGCTGCTAG...CAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTTATCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp GGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCAGCAACAATGAGAGTCTaGAAAAGTGGTCCTGCAAGT +
Preference number: 4 (lower is better)
Translates to: GNQRSVVGFLGTEYVPLSATMRV*KSGPAS
Trigger: ACTTGCAGGACCACTTTTTCAGACTCTCATTGTTGC...TGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCGGGGGAAGCACTTTCTaGACCAGTAACGGTTGCAAC +
Preference number: 4 (lower is better)
Translates to: QNKVVWKLNGNQRSVVGFGGSTF*TSNGCN
Trigger: GTTGCAACCGTTACTGGTTCAGAAAGTGCTTCCCCC...GAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACGGGGGAAGCACTTTCTaGACCAGTAACGGTTGCAAC +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNGGSTF*TSNGCN
Trigger: GTTGCAACCGTTACTGGTTCAGAAAGTGCTTCCCCC...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGGTCATCCGGCGTCTaGAGAACAGAGTGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIRRSSGV*RTEWWS
Trigger: GCTCCACCACTCTGTTCTTCAGACGCCGGATGACCT...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGGTTGCTATTAGGATCTaGATAATTTTCAGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMVAIRI*IIFRGD
Trigger: GTCTCCCCTGAAAATTATTCAGATCCTAATAGCAAC...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGGCAGTAATAAAAAGCTaGCTGAGGTTTCTGAGGTGT +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQAVIKS*LRFLRC
Trigger: ACACCTCAGAAACCTCAGTCAGCTTTTTATTACTGC...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp GAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCGTGCTTCTGTTCTTCTaGAGGCCTCCCATGAAGCCA +
Preference number: 4 (lower is better)
Translates to: ETAYLLQEILLEVGCIPTVLLFF*RPPMKP
Trigger: TGGCTTCATGGGAGGCCTTCAGAAGAACAGAAGCAC...GGTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGACTTGTGAAGACAGCTaGGCTTGGTTCTTTTTGAAA +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMTCEDS*AWFFLK
Trigger: TTTCAAAAAGAACCAAGCTCAGCTGTCTTCACAAGT...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp TCAGATAAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGGTGTCCTCAGGCTCTTaGATAAACAAAGGCTTTTCC +
Preference number: 4 (lower is better)
Translates to: SDKRTGRSMSVMANTRGLVSSGS*INKGFS
Trigger: GGAAAAGCCTTTGTTTATGCAAGAGCCTGAGGACAC...CAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTTATCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGCTCTCCATCTTCTATTaGACTGTCATGGTCTGCAAC +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKELSIFY*TVMVCN
Trigger: GTTGCAGACCATGACAGTGCAATAGAAGATGGAGAG...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATAGATGGGGAGGGGGTCTaGGACCTGGATCCCAGAGCT +
Preference number: 4 (lower is better)
Translates to: HTGINWSIIKDHSLKTEIDGEGV*DLDPRA
Trigger: AGCTCTGGGATCCAGGTCGCAGACCCCCTCCCCATC...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGAAACATGAGGCATTCTaGGGCTTACCGGTGTTTTTA +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQKHEAF*GLPVFL
Trigger: TAAAAACACCGGTAAGCCGCAGAATGCCTCATGTTT...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGTCTATTGCACTGTCATaGTCTGCAACAGTTTCGCTG +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKESIALS*SATVSL
Trigger: CAGCGAAACTGTTGCAGACCATGACAGTGCAATAGA...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAGAATATTCTGTTCTGTaGCTTCTTCACAGACATGAA +
Preference number: 4 (lower is better)
Translates to: WWASWVLSMCRYHLHCPEEYSVL*LLHRHE
Trigger: TTCATGTCTGTGAAGAAGCCACAGAACAGAATATTC...TTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACGCTACTTCGAGGCAGTaGCTGTTCCTCATGCAAAGC +
Preference number: 4 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNATSRQ*LFLMQS
Trigger: GCTTTGCATGAGGAACAGCCACTGCCTCGAAGTAGC...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGGATTTCAAGGCTGCCTaGACTACTCCCCCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVDFKAA*TTPPSC
Trigger: ACAAGAAGGGGGAGTAGTCCAGGCAGCCTTGAAATC...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGGAACACCTTCCCGTCTaGTCTTTAAGGAGTTTCCTG +
Preference number: 4 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVEHLPV*SLRSFL
Trigger: CAGGAAACTCCTTAAAGATCAGACGGGAAGGTGTTC...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGAATGAGGCTTTGGTCTaGTCTGTGGGATATCAAGTA +
Preference number: 4 (lower is better)
Translates to: LNGNQRSVVGFLGTEYVPNEALV*SVGYQV
Trigger: TACTTGATATCCCACAGATCAGACCAAAGCCTCATT...CGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGGGTAATAAAAATGCCTaGCGAAATATCTCTGTGACA +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMGNKNA*RNISVT
Trigger: TGTCACAGAGATATTTCGTCAGGCATTTTTATTACC...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGGTATATCTGAACAAGTaGTCGCAGTGTCCTCAGGCT +
Preference number: 4 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVVYLNK*SQCPQA
Trigger: AGCCTGAGGACACTGCGATCACTTGTTCAGATATAC...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTAGGTCATCCGGCGTCTaGAGAACAGAGTGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSRSSGV*RTEWWS
Trigger: GCTCCACCACTCTGTTCTTCAGACGCCGGATGACCT...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCAGATGGAAATTCACTaGTTTCTAGGTCATCCGGCG +
Preference number: 4 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVQMEIH*FLGHPA
Trigger: CGCCGGATGACCTAGAAATCAGTGAATTTCCATCTG...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCAGTAATAAAAAGCTaGCTGAGGTTTCTGAGGTGT +
Preference number: 4 (lower is better)
Translates to: NQRSVVGFLGTEYVPLSPAVIKS*LRFLRC
Trigger: ACACCTCAGAAACCTCAGTCAGCTTTTTATTACTGC...AGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TCAGATAAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGTTTTTCTTCAAGAGATaGAAGCTCCTCCGTTTGTCC +
Preference number: 4 (lower is better)
Translates to: SDKRTGRSMSVMANTRGLFFFKR*KLLRLS
Trigger: GGACAAACGGAGGAGCTTTCATCTCTTGAAGAAAAA...CAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTTATCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGATCAGTCAACATGGTTaGCTTAAAAAGCCAAGGTGT +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQISQHG*LKKPRC
Trigger: ACACCTTGGCTTTTTAAGGCAACCATGTTGACTGAT...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGTGCTTCCACTCTTGGTaGATTAAGAAAAGCCGAAGA +
Preference number: 4 (lower is better)
Translates to: LNGNQRSVVGFLGTEYVPCFHSW*IKKSRR
Trigger: TCTTCGGCTTTTCTTAATGCACCAAGAGTGGAAGCA...CGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTGTGTCTCTCGGCATTaGCTTGAATCCAAGTTCCTA +
Preference number: 4 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGCVSRH*LESKFL
Trigger: TAGGAACTTGGATTCAAGGCAATGCCGAGAGACACA...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGATCCAAAGCTGCATCTaGAAGTTCTACTGGACCTAT +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEIQSCI*KFYWTY
Trigger: ATAGGTCCAGTAGAACTTGCAGATGCAGCTTTGGAT...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTCTATTGCACTGTCATaGTCTGCAACAGTTTCGCTG +
Preference number: 4 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGSIALS*SATVSL
Trigger: CAGCGAAACTGTTGCAGACCATGACAGTGCAATAGA...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp GCGAGGCCTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCAATCAGAAAGGCTTATTaGAAAGTACTTGGGATTGCT +
Preference number: 4 (lower is better)
Translates to: ARPERVNTTADQGGYCCSIRKAY*KVLGIA
Trigger: AGCAATCCCAAGTACTTTCCAATAAGCCTTTCTGAT...TGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAGGCCTCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGCTAAATCTTCTAAGCTaGAGAGAAAGCCCATCTTTT +
Preference number: 4 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMLNLLS*RESPSF
Trigger: AAAAGATGGGCTTTCTCTCCAGCTTAGAAGATTTAG...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp GAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCGAACACCTTCCCGTCTaGTCTTTAAGGAGTTTCCTG +
Preference number: 4 (lower is better)
Translates to: ETAYLLQEILLEVGCIPTEHLPV*SLRSFL
Trigger: CAGGAAACTCCTTAAAGATCAGACGGGAAGGTGTTC...GGTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGATTGCTTCTCTTAGATaGAAACACTCTGCGAACAAT +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQIASLR*KHSANN
Trigger: ATTGTTCGCAGAGTGTTTTCATCTAAGAGAAGCAAT...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACGTATATCTGAACAAGTaGTCGCAGTGTCCTCAGGCT +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNVYLNK*SQCPQA
Trigger: AGCCTGAGGACACTGCGATCACTTGTTCAGATATAC...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTCACACTGGAAGGCACTaGAGGAATCCGAGTGACTAT +
Preference number: 4 (lower is better)
Translates to: NFSWNLSCCTAIRSVSLCHTGRH*RNPSDY
Trigger: ATAGTCACTCGGATTCCTTCAGTGCCTTCCAGTGTG...ACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTGCACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAGGGGGAAGCACTTTCTaGACCAGTAACGGTTGCAAC +
Preference number: 4 (lower is better)
Translates to: LHCPEMRYQLGKKMLPHVGGSTF*TSNGCN
Trigger: GTTGCAACCGTTACTGGTTCAGAAAGTGCTTCCCCC...TACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACGAAGACTCTCTACTATaGGTATCAGTGAGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNEDSLL*VSVRWL
Trigger: GAGCCACCTCACTGATACTCATAGTAGAGAGTCTTC...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGAAGCTTGCTAGTGTTTaGAACATGAGGCATTCTGCG +
Preference number: 4 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVKLASV*NMRHSA
Trigger: CGCAGAATGCCTCATGTTTCAAACACTAGCAAGCTT...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGATGATTTTGGCCCTATaGGTTACTGTTTCAGACAAG +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEMILAL*VTVSDK
Trigger: CTTGTCTGAAACAGTAACTCATAGGGCCAAAATCAT...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp TCAGATAAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGATCAGTCAACATGGTTaGCTTAAAAAGCCAAGGTGT +
Preference number: 4 (lower is better)
Translates to: SDKRTGRSMSVMANTRGLISQHG*LKKPRC
Trigger: ACACCTTGGCTTTTTAAGGCAACCATGTTGACTGAT...CAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTTATCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp AATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTGAGTGGTCAGTCCAGTaGTTCTGTTCTTCTGAAGGC +
Preference number: 4 (lower is better)
Translates to: NFSWNLSCCTAIRSVSLCEWSVQ*FCSSEG
Trigger: GCCTTCAGAAGAACAGAAGCACTGGACTGACCACTC...ACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGGATTTGATCCAAAGCTaGATCTGCAAGTTCTACTGG +
Preference number: 4 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGDLIQS*ICKFYW
Trigger: CCAGTAGAACTTGCAGATGCAGCTTTGGATCAAATC...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGGAATATTCTGTTCTGTaGCTTCTTCACAGACATGAA +
Preference number: 4 (lower is better)
Translates to: LKELTLLLIRAATAAHCQEYSVL*LLHRHE
Trigger: TTCATGTCTGTGAAGAAGCCACAGAACAGAATATTC...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGTCAGGTCAGGAACATTaGCGCTGTTGCCACCAGTCT +
Preference number: 4 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIRSGQEH*RCCHQS
Trigger: AGACTGGTGGCAACAGCGCCAATGTTCCTGACCTGA...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp GCGAGGCCTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCATGGTTCTTTTTGAAATaGTGTATTTTCAGAAGTCCC +
Preference number: 4 (lower is better)
Translates to: ARPERVNTTADQGGYCCSWFFLK*CIFRSP
Trigger: GGGACTTCTGAAAATACACCATTTCAAAAAGAACCA...TGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAGGCCTCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGGACAGACTCGGTAGATaGTCTAAAAGTAACATGAAC +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEDRLGR*SKSNMN
Trigger: GTTCATGTTACTTTTAGACCATCTACCGAGTCTGTC...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACTGGTCTGTGTGTTGCTaGTGGTGCTACTGCTATTAC +
Preference number: 4 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNWSVCC*WCYCYY
Trigger: GTAATAGCAGTAGCACCACCAGCAACACACAGACCA...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp GAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCCTAGCAGCTGCTCTCTaGATATTCTTTGGCAAGACT +
Preference number: 4 (lower is better)
Translates to: ETAYLLQEILLEVGCIPTLAAAL*IFFGKT
Trigger: AGTCTTGCCAAAGAATATTCAGAGAGCAGCTGCTAG...GGTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGATTGCTTCTCTTAGATaGAAACACTCTGCGAACAAT +
Preference number: 4 (lower is better)
Translates to: LNGNQRSVVGFLGTEYVPIASLR*KHSANN
Trigger: ATTGTTCGCAGAGTGTTTTCATCTAAGAGAAGCAAT...CGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACGCAACAATGAGAGTCTaGAAAAGTGGTCCTGCAAGT +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNATMRV*KSGPAS
Trigger: ACTTGCAGGACCACTTTTTCAGACTCTCATTGTTGC...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGAGGTCATCCGGCGTCTaGAGAACAGAGTGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: TDVQLCSSSLNASINLNVRSSGV*RTEWWS
Trigger: GCTCCACCACTCTGTTCTTCAGACGCCGGATGACCT...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAAGTGTGCTTCTGTTCTTCTaGAGGCCTCCCATGAAGCCA +
Preference number: 4 (lower is better)
Translates to: HCPEMRYQLGKKMLPHVSVLLFF*RPPMKP
Trigger: TGGCTTCATGGGAGGCCTTCAGAAGAACAGAAGCAC...ACTTACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAAGTTGGAGCATGACGGGATaGACTGTCAACGACAGGAAC +
Preference number: 4 (lower is better)
Translates to: HCPEMRYQLGKKMLPHVSWSMTG*TVNDRN
Trigger: GTTCCTGTCGTTGACAGTTCATCCCGTCATGCTCCA...ACTTACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp ATGTTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTTGCAAGCTTGGAGCATaGCGGGATGAACTGTCAACG +
Preference number: 4 (lower is better)
Translates to: MLPHVSNFSWNLSCCTAICKLGA*RDELST
Trigger: CGTTGACAGTTCATCCCGTCATGCTCCAAGCTTGCA...AATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACGTGTCCTCAGGCTCTTaGATAAACAAAGGCTTTTCC +
Preference number: 4 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNVSSGS*INKGFS
Trigger: GGAAAAGCCTTTGTTTATGCAAGAGCCTGAGGACAC...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACGGTCTTATCATTTTCTaGTCCTGTAGCATGGACTGG +
Preference number: 4 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNGLIIF*SCSMDW
Trigger: CCAGTCCATGCTACAGGAGCAGAAAATGATAAGACC...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACTGTGTCTCTCGGCATTaGCTTGAATCCAAGTTCCTA +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNCVSRH*LESKFL
Trigger: TAGGAACTTGGATTCAAGGCAATGCCGAGAGACACA...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGGAGTGGTCAGTCCAGTaGTTCTGTTCTTCTGAAGGC +
Preference number: 4 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIREWSVQ*FCSSEG
Trigger: GCCTTCAGAAGAACAGAAGCACTGGACTGACCACTC...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGAAAGATGGTCATATATaGTATCACCAACTTCCAGAG +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEKDGHI*YHQLPE
Trigger: CTCTGGAAGTTGGTGATAGCATATATGACCATCTTT...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGCTACTTCGAGGCAGTaGCTGTTCCTCATGCAAAGC +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSATSRQ*LFLMQS
Trigger: GCTTTGCATGAGGAACAGCCACTGCCTCGAAGTAGC...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTTCAGGTCAGGAACATTaGCGCTGTTGCCACCAGTCT +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSSGQEH*RCCHQS
Trigger: AGACTGGTGGCAACAGCGCCAATGTTCCTGACCTGA...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGATCAGAAAGGCTTATTaGAAAGTACTTGGGATTGCT +
Preference number: 4 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEIRKAY*KVLGIA
Trigger: AGCAATCCCAAGTACTTTCCAATAAGCCTTTCTGAT...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGATCAGAAAGGCTTATTaGAAAGTACTTGGGATTGCT +
Preference number: 4 (lower is better)
Translates to: LNGNQRSVVGFLGTEYVPIRKAY*KVLGIA
Trigger: AGCAATCCCAAGTACTTTCCAATAAGCCTTTCTGAT...CGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CTGCACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAAATGCACAGAGGCTGTaGAGCAGGAACATTGAGGGA +
Preference number: 4 (lower is better)
Translates to: LHCPEMRYQLGKKMLPHVNAQRL*SRNIEG
Trigger: TCCCTCAATGTTCCTGCTCCACAGCCTCTGTGCATT...TACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAATGCACAGAGGCTGTaGAGCAGGAACATTGAGGGA +
Preference number: 4 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIRNAQRL*SRNIEG
Trigger: TCCCTCAATGTTCCTGCTCCACAGCCTCTGTGCATT...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CTGCACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAGAACACCTTCCCGTCTaGTCTTTAAGGAGTTTCCTG +
Preference number: 4 (lower is better)
Translates to: LHCPEMRYQLGKKMLPHVEHLPV*SLRSFL
Trigger: CAGGAAACTCCTTAAAGATCAGACGGGAAGGTGTTC...TACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGGTTGCTATTAGGATCTaGATAATTTTCAGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVVAIRI*IIFRGD
Trigger: GTCTCCCCTGAAAATTATTCAGATCCTAATAGCAAC...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TCAGATAAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGTTCTTGAAGGCTGAGTaGAGGATTAATAAGATTATC +
Preference number: 4 (lower is better)
Translates to: SDKRTGRSMSVMANTRGLFLKAE*RINKII
Trigger: GATAATCTTATTAATCCTCCACTCAGCCTTCAAGAA...CAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTTATCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAAGTGATTTCAAGGCTGCCTaGACTACTCCCCCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: HCPEMRYQLGKKMLPHVSDFKAA*TTPPSC
Trigger: ACAAGAAGGGGGAGTAGTCCAGGCAGCCTTGAAATC...ACTTACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACTTGTGCTTCCACTCTTaGTGCATTAAGAAAAGCCGA +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNLCFHS*CIKKSR
Trigger: TCGGCTTTTCTTAATGCACCAAGAGTGGAAGCACAA...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACCAAGCTCCTCTTAGTTaGAGAAAGCTTGCTAGTGTT +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNQAPLS*RKLASV
Trigger: AACACTAGCAAGCTTTCTCCAACTAAGAGGAGCTTG...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGGGTAATAAAAATGCCTaGCGAAATATCTCTGTGACA +
Preference number: 4 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVGNKNA*RNISVT
Trigger: TGTCACAGAGATATTTCGTCAGGCATTTTTATTACC...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATACACACTGGAAGGCACTaGAGGAATCCGAGTGACTAT +
Preference number: 4 (lower is better)
Translates to: HTGINWSIIKDHSLKTEIHTGRH*RNPSDY
Trigger: ATAGTCACTCGGATTCCTTCAGTGCCTTCCAGTGTG...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACGTTGCTATTAGGATCTaGATAATTTTCAGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNVAIRI*IIFRGD
Trigger: GTCTCCCCTGAAAATTATTCAGATCCTAATAGCAAC...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp AATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTTTTTTCTTCAAGAGATaGAAGCTCCTCCGTTTGTCC +
Preference number: 4 (lower is better)
Translates to: NFSWNLSCCTAIRSVSLCFFFKR*KLLRLS
Trigger: GGACAAACGGAGGAGCTTTCATCTCTTGAAGAAAAA...ACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGGTGCTTCTGTTCTTCTaGAGGCCTCCCATGAAGCCA +
Preference number: 4 (lower is better)
Translates to: TDVQLCSSSLNASINLNVVLLFF*RPPMKP
Trigger: TGGCTTCATGGGAGGCCTTCAGAAGAACAGAAGCAC...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp GAGCCAGTGGCTATGGTAAGATATGGATCATGTACTTTGATGAAGATTACTGGATGCATTTTGGGTTTGTaGCGAGTGACCAGCACTTTC +
Preference number: 4 (lower is better)
Translates to: EPVAMVRYGSCTLMKITGCILGL*RVTSTF
Trigger: GAAAGTGCTGGTCACTCGTCACAAACCCAAAATGCA...TCCAGTAATCTTCATCAAAGTACATGATCCATATCTTACCATAGCCACTGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219323.2
CDS-3UTR TCA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACTCTGGTTTTACTTCCTaGCCTGTGTACTCTACTTTA +
Preference number: 4 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNSGFTS*PVYSTL
Trigger: TAAAGTAGAGTACACAGGTCAGGAAGTAAAACCAGA...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATAAGTACTGCGACTACCTaGCTGGTTACTTGCCATTCC +
Preference number: 4 (lower is better)
Translates to: HTGINWSIIKDHSLKTEISTATT*LVTCHS
Trigger: GGAATGGCAAGTAACCAGGCAGGTAGTCGCAGTACT...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CTGCACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTATCTATTGCACTGTCATaGTCTGCAACAGTTTCGCTG +
Preference number: 4 (lower is better)
Translates to: LHCPEMRYQLGKKMLPHVSIALS*SATVSL
Trigger: CAGCGAAACTGTTGCAGACCATGACAGTGCAATAGA...TACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGTCAGGTCAGGAACATTaGCGCTGTTGCCACCAGTCT +
Preference number: 4 (lower is better)
Translates to: TDVQLCSSSLNASINLNVSGQEH*RCCHQS
Trigger: AGACTGGTGGCAACAGCGCCAATGTTCCTGACCTGA...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACTCTTCCGGTTTCTCTTaGTCAGACATTGAAAGTATG +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNSSGFS*SDIESM
Trigger: CATACTTTCAATGTCTGACCAAGAGAAACCGGAAGA...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCTAAATCTTCTAAGCTaGAGAGAAAGCCCATCTTTT +
Preference number: 4 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVLNLLS*RESPSF
Trigger: AAAAGATGGGCTTTCTCTCCAGCTTAGAAGATTTAG...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGCAACAATGAGAGTCTaGAAAAGTGGTCCTGCAAGT +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSATMRV*KSGPAS
Trigger: ACTTGCAGGACCACTTTTTCAGACTCTCATTGTTGC...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGCACACTGGAAGGCACTaGAGGAATCCGAGTGACTAT +
Preference number: 4 (lower is better)
Translates to: TDVQLCSSSLNASINLNVHTGRH*RNPSDY
Trigger: ATAGTCACTCGGATTCCTTCAGTGCCTTCCAGTGTG...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATACAGATGGAAATTCACTaGTTTCTAGGTCATCCGGCG +
Preference number: 4 (lower is better)
Translates to: HTGINWSIIKDHSLKTEIQMEIH*FLGHPA
Trigger: CGCCGGATGACCTAGAAATCAGTGAATTTCCATCTG...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGTCAATGTACTGGATTTaGTCCAAAGCTGCATCTGCA +
Preference number: 4 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIRSMYWI*SKAASA
Trigger: TGCAGATGCAGCTTTGGATCAAATCCAGTACATTGA...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGTGTCCTCAGGCTCTTaGATAAACAAAGGCTTTTCC +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSVSSGS*INKGFS
Trigger: GGAAAAGCCTTTGTTTATGCAAGAGCCTGAGGACAC...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTCTTATCATTTTCTaGTCCTGTAGCATGGACTGG +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSGLIIF*SCSMDW
Trigger: CCAGTCCATGCTACAGGAGCAGAAAATGATAAGACC...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATAGGTGGCATTCTGTTCTaGCTCTGTGGGGAAACATTT +
Preference number: 4 (lower is better)
Translates to: HTGINWSIIKDHSLKTEIGGILF*LCGETF
Trigger: AAATGTTTCCCCACAGAGGCAGAACAGAATGCCACC...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGTTCTTGAAGGCTGAGTaGAGGATTAATAAGATTATC +
Preference number: 4 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVFLKAE*RINKII
Trigger: GATAATCTTATTAATCCTCCACTCAGCCTTCAAGAA...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACGAATATTCTGTTCTGTaGCTTCTTCACAGACATGAA +
Preference number: 4 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNEYSVL*LLHRHE
Trigger: TTCATGTCTGTGAAGAAGCCACAGAACAGAATATTC...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACGAATATTCTGTTCTGTaGCTTCTTCACAGACATGAA +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNEYSVL*LLHRHE
Trigger: TTCATGTCTGTGAAGAAGCCACAGAACAGAATATTC...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGTTTCGTCCCTCACACTaGAAGGCACTGAAGGAATCC +
Preference number: 4 (lower is better)
Translates to: TDVQLCSSSLNASINLNVFRPSH*KALKES
Trigger: GGATTCCTTCAGTGCCTTCCAGTGTGAGGGACGAAA...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp AATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTTCTTCCGGTTTCTCTTaGTCAGACATTGAAAGTATG +
Preference number: 4 (lower is better)
Translates to: NFSWNLSCCTAIRSVSLCSSGFS*SDIESM
Trigger: CATACTTTCAATGTCTGACCAAGAGAAACCGGAAGA...ACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACCTAAATCTTCTAAGCTaGAGAGAAAGCCCATCTTTT +
Preference number: 4 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNLNLLS*RESPSF
Trigger: AAAAGATGGGCTTTCTCTCCAGCTTAGAAGATTTAG...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp GAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCACTGGACCTATCAAATaGCAAAGATGGTCATATATG +
Preference number: 4 (lower is better)
Translates to: ETAYLLQEILLEVGCIPTTGPIK*QRWSYM
Trigger: CATATATGACCATCTTTGCCATTTGATAGGTCCAGT...GGTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGCAGATGGAAATTCACTaGTTTCTAGGTCATCCGGCG +
Preference number: 4 (lower is better)
Translates to: TDVQLCSSSLNASINLNVQMEIH*FLGHPA
Trigger: CGCCGGATGACCTAGAAATCAGTGAATTTCCATCTG...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp ATGTTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTGCAGTAATAAAAAGCTaGCTGAGGTTTCTGAGGTGT +
Preference number: 4 (lower is better)
Translates to: MLPHVSNFSWNLSCCTAIAVIKS*LRFLRC
Trigger: ACACCTCAGAAACCTCAGTCAGCTTTTTATTACTGC...AATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAAGTTGCTTCCACTCTTGGTaGATTAAGAAAAGCCGAAGA +
Preference number: 4 (lower is better)
Translates to: HCPEMRYQLGKKMLPHVSCFHSW*IKKSRR
Trigger: TCTTCGGCTTTTCTTAATGCACCAAGAGTGGAAGCA...ACTTACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTTGCTTCCACTCTTGGTaGATTAAGAAAAGCCGAAGA +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSCFHSW*IKKSRR
Trigger: TCTTCGGCTTTTCTTAATGCACCAAGAGTGGAAGCA...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATATGTGTCTCTCGGCATTaGCTTGAATCCAAGTTCCTA +
Preference number: 4 (lower is better)
Translates to: HTGINWSIIKDHSLKTEICVSRH*LESKFL
Trigger: TAGGAACTTGGATTCAAGGCAATGCCGAGAGACACA...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCTTCTTGAAGGCTGAGTaGAGGATTAATAAGATTATC +
Preference number: 4 (lower is better)
Translates to: QNKVVWKLNGNQRSVVGFFLKAE*RINKII
Trigger: GATAATCTTATTAATCCTCCACTCAGCCTTCAAGAA...GAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTTTGTGCTTCCACTCTTaGTGCATTAAGAAAAGCCGA +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSLCFHS*CIKKSR
Trigger: TCGGCTTTTCTTAATGCACCAAGAGTGGAAGCACAA...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CTGCACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAATCTGCAAGTTCTACTaGACCTATCAAATGGCAAAG +
Preference number: 4 (lower is better)
Translates to: LHCPEMRYQLGKKMLPHVICKFY*TYQMAK
Trigger: CTTTGCCATTTGATAGGTCCAGTAGAACTTGCAGAT...TACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp ATGTTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTTCAATAAGCACTTCCTaGGAAGCTGTATCTTTCCCT +
Preference number: 4 (lower is better)
Translates to: MLPHVSNFSWNLSCCTAISISTS*EAVSFP
Trigger: AGGGAAAGATACAGCTTCCCAGGAAGTGCTTATTGA...AATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp ATGTTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGCATCTACTTCTGTaGCTGTTTGTCTACACAGAT +
Preference number: 4 (lower is better)
Translates to: MLPHVSNFSWNLSCCTAIRHLLL*LFVYTD
Trigger: ATCTGTGTAGACAAACAGCCACAGAAGTAGATGCCT...AATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGGGTAATAAAAATGCCTaGCGAAATATCTCTGTGACA +
Preference number: 4 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIRGNKNA*RNISVT
Trigger: TGTCACAGAGATATTTCGTCAGGCATTTTTATTACC...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAAGTATCAGTCAACATGGTTaGCTTAAAAAGCCAAGGTGT +
Preference number: 4 (lower is better)
Translates to: HCPEMRYQLGKKMLPHVSISQHG*LKKPRC
Trigger: ACACCTTGGCTTTTTAAGGCAACCATGTTGACTGAT...ACTTACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CATGAAAATCAAGAGCCAGTGGCTATGGTAAGATATGGATCATGTACTTTGATGTCTTTTACTCTTACCTaGGTCAGCAGGGAAATGATG +
Preference number: 4 (lower is better)
Translates to: HENQEPVAMVRYGSCTLMSFTLT*VSREMM
Trigger: CATCATTTCCCTGCTGACGCAGGTAAGAGTAAAAGA...CATCAAAGTACATGATCCATATCTTACCATAGCCACTGGCTCTTGATTTTCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219323.2
CDS-3UTR CCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATACACATAATGAGGCTTTaGTCTGATCTGTGGGATATC +
Preference number: 4 (lower is better)
Translates to: HTGINWSIIKDHSLKTEIHIMRL*SDLWDI
Trigger: GATATCCCACAGATCAGACCAAAGCCTCATTATGTG...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGATCAGAAAGGCTTATTaGAAAGTACTTGGGATTGCT +
Preference number: 4 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIRIRKAY*KVLGIA
Trigger: AGCAATCCCAAGTACTTTCCAATAAGCCTTTCTGAT...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CTGCACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAAGACATGAGATTTTCTaGTTTTACTTCCTGACCTGT +
Preference number: 4 (lower is better)
Translates to: LHCPEMRYQLGKKMLPHVRHEIF*FYFLTC
Trigger: ACAGGTCAGGAAGTAAAACCAGAAAATCTCATGTCT...TACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTATTGCTTCTCTTAGATaGAAACACTCTGCGAACAAT +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSIASLR*KHSANN
Trigger: ATTGTTCGCAGAGTGTTTTCATCTAAGAGAAGCAAT...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR TCA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGTTTTTCTTCAAGAGATaGAAGCTCCTCCGTTTGTCC +
Preference number: 4 (lower is better)
Translates to: TDVQLCSSSLNASINLNVFFFKR*KLLRLS
Trigger: GGACAAACGGAGGAGCTTTCATCTCTTGAAGAAAAA...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATAATCAGTCAACATGGTTaGCTTAAAAAGCCAAGGTGT +
Preference number: 4 (lower is better)
Translates to: HTGINWSIIKDHSLKTEIISQHG*LKKPRC
Trigger: ACACCTTGGCTTTTTAAGGCAACCATGTTGACTGAT...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR GCA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTTCATCAAGACTTAGTTaGTTAGCCTTTTCAGCAGTT +
Preference number: 4 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSSSRLS*LAFSAV
Trigger: AACTGCTGAAAAGGCTAAGCAACTAAGTCTTGATGA...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGTTCTTGAAGGCTGAGTaGAGGATTAATAAGATTATC +
Preference number: 4 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIRFLKAE*RINKII
Trigger: GATAATCTTATTAATCCTCCACTCAGCCTTCAAGAA...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CACACCGGGATAAACTGGTCAATAATAAAAGACCACAGCCTCAAAACAGAAATATCTTCCGGTTTCTCTTaGTCAGACATTGAAAGTATG +
Preference number: 4 (lower is better)
Translates to: HTGINWSIIKDHSLKTEISSGFS*SDIESM
Trigger: CATACTTTCAATGTCTGACCAAGAGAAACCGGAAGA...TATTTCTGTTTTGAGGCTGTGGTCTTTTATTATTGACCAGTTTATCCCGGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAAGTCTAAATCTTCTAAGCTaGAGAGAAAGCCCATCTTTT +
Preference number: 4 (lower is better)
Translates to: HCPEMRYQLGKKMLPHVSLNLLS*RESPSF
Trigger: AAAAGATGGGCTTTCTCTCCAGCTTAGAAGATTTAG...ACTTACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CCA 90 bp CTGCACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAGTGTACTCTACTTTATaGAAAGATGGTATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: LHCPEMRYQLGKKMLPHVVYSTL*KDGISS
Trigger: AGAGGAAATACCATCTTTCCATAAAGTAGAGTACAC...TACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
3UTR CAA 72 bp GAGCCAGTGGCTATGGTAAGATATGGATCATGTACTTaGATGAAGATTACTGGATATTTAAGGAACCACATT +
Preference number: 4 (lower is better)
Translates to: EPVAMVRYGSCT*MKITGYLRNHI
Trigger: AATGTGGTTCCTTAAATATCCAGTAATCTTCATCAAAGTACATGATCCATATCTTACCATAGCCACTGGCTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219323.2
CDS CCA 90 bp CCCGTCTACCTGTGCTGCTGGGGCAGCGTCACTGGGTGGAATCTCTaGGTAGGATCCTGCGTCAGCAGGGAAATGATGGTAGGGAGCTGG +
Preference number: 5 (lower is better)
Translates to: PVYLCCWGSVTGWNL*VGSCVSREMMVGSW
Trigger: CCAGCTCCCTACCATCATTTCCCTGCTGACGCAGGATCCTACCCAGAGATTCCACCCAGTGACGCTGCCCCAGCAGCACAGGTAGACGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS CCA 90 bp CAGATCCCTCAGTGGAGCCTCGGGTGGCATTCTGTTCTGCCTCTGTaGGGAAACATTTGCCTTCGGCTTCGAAAGAGCATGGACAACAGT +
Preference number: 5 (lower is better)
Translates to: QIPQWSLGWHSVLPL*GNICLRLRKSMDNS
Trigger: ACTGTTGTCCATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCCGAGGCTCCACTGAGGGATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp GTCAGCCCCGTCTACCTGTGCTGCTGGGGCAGCGTCACTGGGTGGAATCTCTGGAATCAGAAAGGCTTATaGGAAAGTACTTGGGATTGC +
Preference number: 5 (lower is better)
Translates to: VSPVYLCCWGSVTGWNLWNQKGL*ESTWDC
Trigger: GCAATCCCAAGTACTTTCCAATAAGCCTTTCTGATT...CCAGAGATTCCACCCAGTGACGCTGCCCCAGCAGCACAGGTAGACGGGGCTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
CDS-3UTR CAA 90 bp TGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAACAGGAACTGCACCTTaGGCTCGCTCAACAGTGAAT +
Preference number: 5 (lower is better)
Translates to: WWASWVLSMCRYHLHCPETGTAP*ARSTVN
Trigger: ATTCACTGTTGAGCGAGCCAAAGGTGCAGTTCCTGT...TTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 90 bp CTAGTTATTGACGAAGCCTCTGTGGAACTCTGCAAGCTTGGAGCATaGCGGGATGAACTGTCAACGACAGGAACTGCACCTTTGGCTCGC +
Preference number: 5 (lower is better)
Translates to: LVIDEASVELCKLGA*RDELSTTGTAPLAR
Trigger: GCGAGCCAAAGGTGCAGTTCCTGTCGTTGACAGTTCATCCCGTCATGCTCCAAGCTTGCAGAGTTCCACAGAGGCTTCGTCAATAACTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 90 bp AGTACTGCGACTACCTGCCTGGTTACTTGCCATTCCTTCTTTCTGTaGTGTGGCTGTGGGGATCTCTGTGGATTCCCTCACTGCTCTGCT +
Preference number: 5 (lower is better)
Translates to: STATTCLVTCHSFFL*CGCGDLCGFPHCSA
Trigger: AGCAGAGCAGTGAGGGAATCCACAGAGATCCCCACAGCCACATCACAGAAAGAAGGAATGGCAAGTAACCAGGCAGGTAGTCGCAGTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CCA 90 bp ATAGCCCATTACATGACTGTACAGATCCCTCAGTGGAGCCTCGGGTaGCATTCTGTTCTGCCTCTGTGGGGAAACATTTGCCTTCGGCTT +
Preference number: 5 (lower is better)
Translates to: IAHYMTVQIPQWSLG*HSVLPLWGNICLRL
Trigger: AAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCCGAGGCTCCACTGAGGGATCTGTACAGTCATGTAATGGGCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp CTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCACTGCCAGTCTGTGGGGAAACATTaGCCTTCGGCTTCGAAAGAG +
Preference number: 5 (lower is better)
Translates to: LKELTLLLIRAATAAHCQSVGKH*PSASKE
Trigger: CTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGA...CTGGCAGTGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS GCA 90 bp TGGAGCCTCGGGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATTTaGCTTCGGCTTCGAAAGAGCATGGACAACAGTTTTATAAACGCC +
Preference number: 5 (lower is better)
Translates to: WSLGWHSVLPLWGNI*LRLRKSMDNSFINA
Trigger: GGCGTTTATAAAACTGTTGTCCATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCCGAGGCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp GCGAGGCCTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCAGGAAAGTACTTGGGATaGCTAAAACTTTGCGCTCCA +
Preference number: 5 (lower is better)
Translates to: ARPERVNTTADQGGYCCSGKYLG*LKLCAP
Trigger: TGGAGCGCAAAGTTTTAGCAATCCCAAGTACTTTCC...TGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAGGCCTCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp TGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTGCACTGCCCAGAAATGGGAAAGTACTTGGGATaGCTAAAACTTTGCGCTCCA +
Preference number: 5 (lower is better)
Translates to: WASWVLSMCRYHLHCPEMGKYLG*LKLCAP
Trigger: TGGAGCGCAAAGTTTTAGCAATCCCAAGTACTTTCC...CATTTCTGGGCAGTGCAGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp AATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTCTGATGCTGCACCGATaGTATCTAGAGGTCTGTACA +
Preference number: 5 (lower is better)
Translates to: NQRSVVGFLGTEYVPLSPLMLHR*YLEVCT
Trigger: TGTACAGACCTCTAGATACAATCGGTGCAGCATCAG...AGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 90 bp TCTACTATGAGTATCAGTGAGGTGGCTCTCAGTGGATCTAGTTATTaGCGAAGCCTCTGTGGAACTCTGCAAGCTTGGAGCATGACGGGA +
Preference number: 5 (lower is better)
Translates to: STMSISEVALSGSSY*RSLCGTLQAWSMTG
Trigger: TCCCGTCATGCTCCAAGCTTGCAGAGTTCCACAGAGGCTTCGTCAATAACTAGATCCACTGAGAGCCACCTCACTGATACTCATAGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CCA 90 bp ATGGATCAGAACAGGAGCACTTTTAGCACTGCGAATATAGGCCGATaGCAGAGCACATTCACCAATGGATCGGCTTCTCATGGCAACAGT +
Preference number: 5 (lower is better)
Translates to: MDQNRSTFSTANIGR*QSTFTNGSASHGNS
Trigger: ACTGTTGCCATGAGAAGCCGATCCATTGGTGAATGTGCTCTGCCATCGGCCTATATTCGCAGTGCTAAAAGTGCTCCTGTTCTGATCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219432.2
CDS-3UTR CAA 90 bp TCAGATAAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGGGAAAGTACTTGGGATaGCTAAAACTTTGCGCTCCA +
Preference number: 5 (lower is better)
Translates to: SDKRTGRSMSVMANTRGLGKYLG*LKLCAP
Trigger: TGGAGCGCAAAGTTTTAGCAATCCCAAGTACTTTCC...CAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTTATCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp GCGAGGCCTGAAAGAGTTAACACTACTGCTGATCAGGGCGGCTACTGCTGCTCAAATCAGAAAGGCTTATaGGAAAGTACTTGGGATTGC +
Preference number: 5 (lower is better)
Translates to: ARPERVNTTADQGGYCCSNQKGL*ESTWDC
Trigger: GCAATCCCAAGTACTTTCCAATAAGCCTTTCTGATT...TGAGCAGCAGTAGCCGCCCTGATCAGCAGTAGTGTTAACTCTTTCAGGCCTCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGGTCAATGTACTGGATTaGATCCAAAGCTGCATCTGC +
Preference number: 5 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEVNVLD*IQSCIC
Trigger: GCAGATGCAGCTTTGGATCAAATCCAGTACATTGAC...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGTCAGGCTCTGCAGACTaGTCTACTTTATCAACAGTA +
Preference number: 5 (lower is better)
Translates to: KRTGRSMSVMANTRGLKESGSAD*STLSTV
Trigger: TACTGTTGATAAAGTAGACAAGTCTGCAGAGCCTGA...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTCTCTCCATCTTCTATaGCACTGTCATGGTCTGCAA +
Preference number: 5 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGSLHLL*HCHGLQ
Trigger: TTGCAGACCATGACAGTGCAATAGAAGATGGAGAGA...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp AATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTAGGTTATCTCTGATCTaGGCTAGATTCTGCCAAAGT +
Preference number: 5 (lower is better)
Translates to: NQRSVVGFLGTEYVPLSPRLSLI*ARFCQS
Trigger: ACTTTGGCAGAATCTAGCCAAGATCAGAGATAACCT...AGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp AAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGAAAGAGTTCCTCTATAGTTACTaGAGTTTCTTGAAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: KRTGRSMSVMANTRGLKEFLYSY*SFLKAE
Trigger: CTCAGCCTTCAAGAAACTCAAGTAACTATAGAGGAA...CTCTTTCAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp TCAGATAAACGCACAGGAAGGAGCATGAGTGTTATGGCAAACACGCGAGGCCTGTTCCTCTATAGTTACTaGAGTTTCTTGAAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: SDKRTGRSMSVMANTRGLFLYSY*SFLKAE
Trigger: CTCAGCCTTCAAGAAACTCAAGTAACTATAGAGGAA...CAGGCCTCGCGTGTTTGCCATAACACTCATGCTCCTTCCTGTGCGTTTATCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp GGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCATCCTCTTTATTTACTTaGGCTCGCTCAACAGTGAAT +
Preference number: 5 (lower is better)
Translates to: GNQRSVVGFLGTEYVPLSSSLFT*ARSTVN
Trigger: ATTCACTGTTGAGCGAGCCAAAGTAAATAAAGAGGA...TGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
CDS-3UTR CAA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACTCTCTCCATCTTCTATaGCACTGTCATGGTCTGCAA +
Preference number: 5 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNSLHLL*HCHGLQ
Trigger: TTGCAGACCATGACAGTGCAATAGAAGATGGAGAGA...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGGAGACAACCAACCTCTaGTCCATTTCATATGATGAA +
Preference number: 5 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGETTNL*SISYDE
Trigger: TTCATCATATGAAATGGACAAGAGGTTGGTTGTCTC...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp AATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGCCGCTATCACCTAGATGTCTCAATTTTTaGGTCAGAGAGTCATCAGAA +
Preference number: 5 (lower is better)
Translates to: NQRSVVGFLGTEYVPLSPRCLNF*VRESSE
Trigger: TTCTGATGACTCTCTGACCAAAAAATTGAGACATCT...AGGTGATAGCGGCACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS GCA 90 bp GTCATCGTCTCCTTCAAGGTCAATGTACTGGATTTGATCCAAAGCTaGATCTGCAAGTTCTACTGGACCTATCAAATGGCAAAGATGGTC +
Preference number: 5 (lower is better)
Translates to: VIVSFKVNVLDLIQS*ICKFYWTYQMAKMV
Trigger: GACCATCTTTGCCATTTGATAGGTCCAGTAGAACTTGCAGATGCAGCTTTGGATCAAATCCAGTACATTGACCTTGAAGGAGACGATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp AAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGTACTGAGTATGTGGAGACAACCAACCTCTaGTCCATTTCATATGATGAA +
Preference number: 5 (lower is better)
Translates to: KLNGNQRSVVGFLGTEYVETTNL*SISYDE
Trigger: TTCATCATATGAAATGGACAAGAGGTTGGTTGTCTC...CACATACTCAGTACCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp CAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCCTGGGAGATGTCTCAATTTTTaGGTCAGAGAGTCATCAGAA +
Preference number: 5 (lower is better)
Translates to: QSCLEAKRKSKVSGGLPGRCLNF*VRESSE
Trigger: TTCTGATGACTCTCTGACCAAAAAATTGAGACATCT...CCCAGGAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACCAGAGGATTATAAAATaGGACAGACTCGGTAGATGG +
Preference number: 5 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNQRIIK*DRLGRW
Trigger: CCATCTACCGAGTCTGTCCAATTTTATAATCCTCTG...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 90 bp GAAGAAAGAAGGTCATCGTCTCCTTCAAGGTCAATGTACTGGATTTaGTCCAAAGCTGCATCTGCAAGTTCTACTGGACCTATCAAATGG +
Preference number: 5 (lower is better)
Translates to: EERRSSSPSRSMYWI*SKAASASSTGPIKW
Trigger: CCATTTGATAGGTCCAGTAGAACTTGCAGATGCAGCTTTGGATCAAATCCAGTACATTGACCTTGAAGGAGACGATGACCTTCTTTCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 90 bp GACAAGCTCCTCTTAGTTGGAGAAAGCTTGCTAGTGTTTGAAACATaGGGCATTCTGCGGCTTACCGGTGTTTTTAATGCAGTTTTCTTG +
Preference number: 5 (lower is better)
Translates to: DKLLLVGESLLVFET*GILRLTGVFNAVFL
Trigger: CAAGAAAACTGCATTAAAAACACCGGTAAGCCGCAGAATGCCTCATGTTTCAAACACTAGCAAGCTTTCTCCAACTAAGAGGAGCTTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp GGAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACTTCCTCTATAGTTACTaGAGTTTCTTGAAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: GDCLFTTGNTSGGGVHTNFLYSY*SFLKAE
Trigger: CTCAGCCTTCAAGAAACTCAAGTAACTATAGAGGAA...GTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp CAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCTCCTCTTTATTTACTTaGGCTCGCTCAACAGTGAAT +
Preference number: 5 (lower is better)
Translates to: QNKVVWKLNGNQRSVVGFSSLFT*ARSTVN
Trigger: ATTCACTGTTGAGCGAGCCAAAGTAAATAAAGAGGA...GAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
CDS-3UTR CAA 90 bp CAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGTGGGCTTCGAGACAACCAACCTCTaGTCCATTTCATATGATGAA +
Preference number: 5 (lower is better)
Translates to: QNKVVWKLNGNQRSVVGFETTNL*SISYDE
Trigger: TTCATCATATGAAATGGACAAGAGGTTGGTTGTCTC...GAAGCCCACCACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACGAGACAACCAACCTCTaGTCCATTTCATATGATGAA +
Preference number: 5 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNETTNL*SISYDE
Trigger: TTCATCATATGAAATGGACAAGAGGTTGGTTGTCTC...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp TTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAACAATCAGAAAGGCTTATaGGAAAGTACTTGGGATTGC +
Preference number: 5 (lower is better)
Translates to: FSWNLSCCTAIRSVSLCNNQKGL*ESTWDC
Trigger: GCAATCCCAAGTACTTTCCAATAAGCCTTTCTGATT...GTTACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp ATGTTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTTACCTGCCTGGTTACTaGCCATTCCTTCTTTCTGTG +
Preference number: 5 (lower is better)
Translates to: MLPHVSNFSWNLSCCTAIYLPGY*PFLLSV
Trigger: CACAGAAAGAAGGAATGGCAAGTAACCAGGCAGGTA...AATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 90 bp TGGTCATATATGCTATCACCAACTTCCAGAGAAGACTCTCTACTATaGGTATCAGTGAGGTGGCTCTCAGTGGATCTAGTTATTGACGAA +
Preference number: 5 (lower is better)
Translates to: WSYMLSPTSREDSLL*VSVRWLSVDLVIDE
Trigger: TTCGTCAATAACTAGATCCACTGAGAGCCACCTCACTGATACTCATAGTAGAGAGTCTTCTCTGGAAGTTGGTGATAGCATATATGACCA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp AATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTTTCCTCTATAGTTACTaGAGTTTCTTGAAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: NFSWNLSCCTAIRSVSLCFLYSY*SFLKAE
Trigger: CTCAGCCTTCAAGAAACTCAAGTAACTATAGAGGAA...ACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp ATGTTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTTCTCTCCATCTTCTATaGCACTGTCATGGTCTGCAA +
Preference number: 5 (lower is better)
Translates to: MLPHVSNFSWNLSCCTAISLHLL*HCHGLQ
Trigger: TTGCAGACCATGACAGTGCAATAGAAGATGGAGAGA...AATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGGTTATCTCTGATCTaGGCTAGATTCTGCCAAAGT +
Preference number: 5 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIRRLSLI*ARFCQS
Trigger: ACTTTGGCAGAATCTAGCCAAGATCAGAGATAACCT...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTGGAAAGTACTTGGGATaGCTAAAACTTTGCGCTCCA +
Preference number: 5 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSGKYLG*LKLCAP
Trigger: TGGAGCGCAAAGTTTTAGCAATCCCAAGTACTTTCC...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp GAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCCTTATTGGAAAGTACTaGGGATTGCTAAAACTTTGC +
Preference number: 5 (lower is better)
Translates to: ETAYLLQEILLEVGCIPTLIGKY*GLLKLC
Trigger: GCAAAGTTTTAGCAATCCCAAGTACTTTCCAATAAG...GGTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp AATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGTGTTTCTCTCTGTAATCAGAAAGGCTTATaGGAAAGTACTTGGGATTGC +
Preference number: 5 (lower is better)
Translates to: NFSWNLSCCTAIRSVSLCNQKGL*ESTWDC
Trigger: GCAATCCCAAGTACTTTCCAATAAGCCTTTCTGATT...ACAGAGAGAAACACTCCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp GAGACTGCTTATTTACTACAGGAAATACTTCTGGAGGTGGGGTGCATACCAACCAGATGTCTCAATTTTTaGGTCAGAGAGTCATCAGAA +
Preference number: 5 (lower is better)
Translates to: ETAYLLQEILLEVGCIPTRCLNF*VRESSE
Trigger: TTCTGATGACTCTCTGACCAAAAAATTGAGACATCT...GGTTGGTATGCACCCCACCTCCAGAAGTATTTCCTGTAGTAAATAAGCAGTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS TCA 90 bp GGATTTGAGCATCATCAATATCTGAAAGCTCATCAGAAAGGGGAGTaGGAACAATATCAGGCAAGAAGGGTTTGGAAGTATGGATCAGAA +
Preference number: 5 (lower is better)
Translates to: GFEHHQYLKAHQKGE*EQYQARRVWKYGSE
Trigger: TTCTGATCCATACTTCCAAACCCTTCTTGCCTGATATTGTTCTCACTCCCCTTTCTGATGAGCTTTCAGATATTGATGATGCTCAAATCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219432.2
CDS GCA 90 bp CTGCAAGTTCTACTGGACCTATCAAATGGCAAAGATGGTCATATATaGTATCACCAACTTCCAGAGAAGACTCTCTACTATGAGTATCAG +
Preference number: 5 (lower is better)
Translates to: LQVLLDLSNGKDGHI*YHQLPEKTLYYEYQ
Trigger: CTGATACTCATAGTAGAGAGTCTTCTCTGGAAGTTGGTGATAGCATATATGACCATCTTTGCCATTTGATAGGTCCAGTAGAACTTGCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS GCA 90 bp GTCTCCTTCAAGGTCAATGTACTGGATTTGATCCAAAGCTGCATCTaGAAGTTCTACTGGACCTATCAAATGGCAAAGATGGTCATATAT +
Preference number: 5 (lower is better)
Translates to: VSFKVNVLDLIQSCI*KFYWTYQMAKMVIY
Trigger: ATATATGACCATCTTTGCCATTTGATAGGTCCAGTAGAACTTGCAGATGCAGCTTTGGATCAAATCCAGTACATTGACCTTGAAGGAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CCA 90 bp AAAGCTGCATCTGCAAGTTCTACTGGACCTATCAAATGGCAAAGATaGTCATATATGCTATCACCAACTTCCAGAGAAGACTCTCTACTA +
Preference number: 5 (lower is better)
Translates to: KAASASSTGPIKWQR*SYMLSPTSREDSLL
Trigger: TAGTAGAGAGTCTTCTCTGGAAGTTGGTGATAGCATATATGACCATCTTTGCCATTTGATAGGTCCAGTAGAACTTGCAGATGCAGCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CCA 90 bp TTCTGGTTTTACTTCCTGACCTGTGTACTCTACTTTATGGAAAGATaGTATTTCCTCTCTAGTTACGTCAATAAGCACTTCCTGGGAAGC +
Preference number: 5 (lower is better)
Translates to: FWFYFLTCVLYFMER*YFLSSYVNKHFLGS
Trigger: GCTTCCCAGGAAGTGCTTATTGACGTAACTAGAGAGGAAATACCATCTTTCCATAAAGTAGAGTACACAGGTCAGGAAGTAAAACCAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTAGGTTATCTCTGATCTaGGCTAGATTCTGCCAAAGT +
Preference number: 5 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSRLSLI*ARFCQS
Trigger: ACTTTGGCAGAATCTAGCCAAGATCAGAGATAACCT...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp GAGCCAGTGGCTATGGTAAGATATGGATCATGTACTTTGATGAAGATTACTGGAGAGAAGAAAAGGGTATaGCATTTTGGGTTTGTGACG +
Preference number: 5 (lower is better)
Translates to: EPVAMVRYGSCTLMKITGEKKRV*HFGFVT
Trigger: CGTCACAAACCCAAAATGCAATACCCTTTTCTTCTC...TCCAGTAATCTTCATCAAAGTACATGATCCATATCTTACCATAGCCACTGGCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219323.2
CDS TCA 90 bp ACACTATTTCGTTTCTTAGCGGCAATTTTCATGATTTTGGCCCTATaGGTTACTGTTTCAGACAAGCTCCTCTTAGTTGGAGAAAGCTTG +
Preference number: 5 (lower is better)
Translates to: TLFRFLAAIFMILAL*VTVSDKLLLVGESL
Trigger: CAAGCTTTCTCCAACTAAGAGGAGCTTGTCTGAAACAGTAACTCATAGGGCCAAAATCATGAAAATTGCCGCTAAGAAACGAAATAGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGTCTCTCCATCTTCTATaGCACTGTCATGGTCTGCAA +
Preference number: 5 (lower is better)
Translates to: TDVQLCSSSLNASINLNVSLHLL*HCHGLQ
Trigger: TTGCAGACCATGACAGTGCAATAGAAGATGGAGAGA...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp ATGTTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTTCCTCTTTATTTACTTaGGCTCGCTCAACAGTGAAT +
Preference number: 5 (lower is better)
Translates to: MLPHVSNFSWNLSCCTAISSLFT*ARSTVN
Trigger: ATTCACTGTTGAGCGAGCCAAAGTAAATAAAGAGGA...AATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAACAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
CDS-3UTR CAA 90 bp TTACCACATGTAAGTAATTTCAGTTGGAATCTGAGCTGCTGCACTGCCATTAGGAGATGTCTCAATTTTTaGGTCAGAGAGTCATCAGAA +
Preference number: 5 (lower is better)
Translates to: LPHVSNFSWNLSCCTAIRRCLNF*VRESSE
Trigger: TTCTGATGACTCTCTGACCAAAAAATTGAGACATCT...CCTAATGGCAGTGCAGCAGCTCAGATTCCAACTGAAATTACTTACATGTGGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGAGGTTATCTCTGATCTaGGCTAGATTCTGCCAAAGT +
Preference number: 5 (lower is better)
Translates to: TDVQLCSSSLNASINLNVRLSLI*ARFCQS
Trigger: ACTTTGGCAGAATCTAGCCAAGATCAGAGATAACCT...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp CCTAAAAAGGCAGAACAAAGTTGTCTGGAAGCTAAACGGAAATCAAAGGTCAGTCTTATTGGAAAGTACTaGGGATTGCTAAAACTTTGC +
Preference number: 5 (lower is better)
Translates to: PKKAEQSCLEAKRKSKVSLIGKY*GLLKLC
Trigger: GCAAAGTTTTAGCAATCCCAAGTACTTTCCAATAAG...ACTGACCTTTGATTTCCGTTTAGCTTCCAGACAACTTTGTTCTGCCTTTTTAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp CACTGCCCAGAAATGAGATACCAACTTGGGAAGAAAATGTTACCACATGTAAGTCTTATTGGAAAGTACTaGGGATTGCTAAAACTTTGC +
Preference number: 5 (lower is better)
Translates to: HCPEMRYQLGKKMLPHVSLIGKY*GLLKLC
Trigger: GCAAAGTTTTAGCAATCCCAAGTACTTTCCAATAAG...ACTTACATGTGGTAACATTTTCTTCCCAAGTTGGTATCTCATTTCTGGGCAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS-3UTR CAA 90 bp ACAGATGTGCAGCTTTGCTCTAGCTCTCTAAATGCTTCCATTAATTTAAATGTGCTTATTGGAAAGTACTaGGGATTGCTAAAACTTTGC +
Preference number: 5 (lower is better)
Translates to: TDVQLCSSSLNASINLNVLIGKY*GLLKLC
Trigger: GCAAAGTTTTAGCAATCCCAAGTACTTTCCAATAAG...CACATTTAAATTAATGGAAGCATTTAGAGAGCTAGAGCAAAGCTGCACATCTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS CCA 72 bp CTGTGCTGCTGGGGCAGCGTCACTGGGTGGAATCTCTaGGTAGGATCCTGCGTCAGCAGGGAAATGATGGTA +
Preference number: 6 (lower is better)
Translates to: LCCWGSVTGWNL*VGSCVSREMMV
Trigger: TACCATCATTTCCCTGCTGACGCAGGATCCTACCCAGAGATTCCACCCAGTGACGCTGCCCCAGCAGCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS GCA 72 bp AGATCCCTCAGTGGAGCCTCGGGTGGCATTCTGTTCTaGCTCTGTGGGGAAACATTTGCCTTCGGCTTCGAA +
Preference number: 6 (lower is better)
Translates to: RSLSGASGGILF*LCGETFAFGFE
Trigger: TTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCCGAGGCTCCACTGAGGGATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CCA 72 bp CAGTGGAGCCTCGGGTGGCATTCTGTTCTGCCTCTGTaGGGAAACATTTGCCTTCGGCTTCGAAAGAGCATG +
Preference number: 6 (lower is better)
Translates to: QWSLGWHSVLPL*GNICLRLRKSM
Trigger: CATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCCGAGGCTCCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 72 bp CTCTGTGGAACTCTGCAAGCTTGGAGCATGACGGGATaGACTGTCAACGACAGGAACTGCACCTTTGGCTCG +
Preference number: 6 (lower is better)
Translates to: LCGTLQAWSMTG*TVNDRNCTFGS
Trigger: CGAGCCAAAGGTGCAGTTCCTGTCGTTGACAGTTCATCCCGTCATGCTCCAAGCTTGCAGAGTTCCACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 72 bp GACGAAGCCTCTGTGGAACTCTGCAAGCTTGGAGCATaGCGGGATGAACTGTCAACGACAGGAACTGCACCT +
Preference number: 6 (lower is better)
Translates to: DEASVELCKLGA*RDELSTTGTAP
Trigger: AGGTGCAGTTCCTGTCGTTGACAGTTCATCCCGTCATGCTCCAAGCTTGCAGAGTTCCACAGAGGCTTCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CCA 72 bp TACATGACTGTACAGATCCCTCAGTGGAGCCTCGGGTaGCATTCTGTTCTGCCTCTGTGGGGAAACATTTGC +
Preference number: 6 (lower is better)
Translates to: YMTVQIPQWSLG*HSVLPLWGNIC
Trigger: GCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCCGAGGCTCCACTGAGGGATCTGTACAGTCATGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CAA 90 bp GTGGAGCCTCGGGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATTaGCCTTCGGCTTCGAAAGAGCATGGACAACAGTTTTATAAACGC +
Preference number: 6 (lower is better)
Translates to: VEPRVAFCSASVGKH*PSASKEHGQQFYKR
Trigger: GCGTTTATAAAACTGTTGTCCATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCCGAGGCTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 72 bp GTACACACCAGGCTTTACAAGGTCTGTACCACTAGTTaGGCTGGTCTGTGTGTTGCTGGTGGTGCTACTGCT +
Preference number: 6 (lower is better)
Translates to: VHTRLYKVCTTS*AGLCVAGGATA
Trigger: AGCAGTAGCACCACCAGCAACACACAGACCAGCTCAACTAGTGGTACAGACCTTGTAAAGCCTGGTGTGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 72 bp ACTACCTGCCTGGTTACTTGCCATTCCTTCTTTCTGTaGTGTGGCTGTGGGGATCTCTGTGGATTCCCTCAC +
Preference number: 6 (lower is better)
Translates to: TTCLVTCHSFFL*CGCGDLCGFPH
Trigger: GTGAGGGAATCCACAGAGATCCCCACAGCCACATCACAGAAAGAAGGAATGGCAAGTAACCAGGCAGGTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CAA 72 bp CGGGTGGCATTCTGTTCTGCCTCTGTGGGGAAACATTaGCCTTCGGCTTCGAAAGAGCATGGACAACAGTTT +
Preference number: 6 (lower is better)
Translates to: RVAFCSASVGKH*PSASKEHGQQF
Trigger: AAACTGTTGTCCATGCTCTTTCGAAGCCGAAGGCAAATGTTTCCCCACAGAGGCAGAACAGAATGCCACCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CAA 90 bp CCAGGCTTTACAAGGTCTGTACCACTAGTTGAGCTGGTCTGTGTGTaGCTGGTGGTGCTACTGCTATTACTGCTAAAGCCACTGAGCTTC +
Preference number: 6 (lower is better)
Translates to: PGFTRSVPLVELVCV*LVVLLLLLLKPLSF
Trigger: GAAGCTCAGTGGCTTTAGCAGTAATAGCAGTAGCACCACCAGCAACACACAGACCAGCTCAACTAGTGGTACAGACCTTGTAAAGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 72 bp AGTATCAGTGAGGTGGCTCTCAGTGGATCTAGTTATTaGCGAAGCCTCTGTGGAACTCTGCAAGCTTGGAGC +
Preference number: 6 (lower is better)
Translates to: SISEVALSGSSY*RSLCGTLQAWS
Trigger: GCTCCAAGCTTGCAGAGTTCCACAGAGGCTTCGTCAATAACTAGATCCACTGAGAGCCACCTCACTGATACT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CCA 72 bp AACAGGAGCACTTTTAGCACTGCGAATATAGGCCGATaGCAGAGCACATTCACCAATGGATCGGCTTCTCAT +
Preference number: 6 (lower is better)
Translates to: NRSTFSTANIGR*QSTFTNGSASH
Trigger: ATGAGAAGCCGATCCATTGGTGAATGTGCTCTGCCATCGGCCTATATTCGCAGTGCTAAAAGTGCTCCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219432.2
CDS TCA 72 bp AGGTCATCGTCTCCTTCAAGGTCAATGTACTGGATTTaGTCCAAAGCTGCATCTGCAAGTTCTACTGGACCT +
Preference number: 6 (lower is better)
Translates to: RSSSPSRSMYWI*SKAASASSTGP
Trigger: AGGTCCAGTAGAACTTGCAGATGCAGCTTTGGATCAAATCCAGTACATTGACCTTGAAGGAGACGATGACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 72 bp CAAGCTCCTCTTAGTTGGAGAAAGCTTGCTAGTGTTTaGAACATGAGGCATTCTGCGGCTTACCGGTGTTTT +
Preference number: 6 (lower is better)
Translates to: QAPLSWRKLASV*NMRHSAAYRCF
Trigger: AAAACACCGGTAAGCCGCAGAATGCCTCATGTTTCAAACACTAGCAAGCTTTCTCCAACTAAGAGGAGCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS GCA 72 bp CTCTGTAAACACTCAGGACTTGTAGTGCCTAAATACTaGAGGAGCTCGTCAAGAACATCTTCTTCCTCTCGT +
Preference number: 6 (lower is better)
Translates to: LCKHSGLVVPKY*RSSSRTSSSSR
Trigger: ACGAGAGGAAGAAGATGTTCTTGACGAGCTCCTGCAGTATTTAGGCACTACAAGTCCTGAGTGTTTACAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000219432.2
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS CCA 72 bp AAACGGCCTGAGTGCCAGCTTGAATATTCTGTTCTGTaGCTTCTTCACAGACATGAAAAGCTTCTTGGTAGG +
Preference number: 6 (lower is better)
Translates to: KRPECQLEYSVL*LLHRHEKLLGR
Trigger: CCTACCAAGAAGCTTTTCATGTCTGTGAAGAAGCCACAGAACAGAATATTCAAGCTGGCACTCAGGCCGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000219432.2
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS CAA 72 bp AAGGTCATCGTCTCCTTCAAGGTCAATGTACTGGATTaGATCCAAAGCTGCATCTGCAAGTTCTACTGGACC +
Preference number: 6 (lower is better)
Translates to: KVIVSFKVNVLD*IQSCICKFYWT
Trigger: GGTCCAGTAGAACTTGCAGATGCAGCTTTGGATCAAATCCAGTACATTGACCTTGAAGGAGACGATGACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CAA 90 bp AGCTCATCAGAAAGGGGAGTGAGAACAATATCAGGCAAGAAGGGTTaGGAAGTATGGATCAGAACAGGAGCACTTTTAGCACTGCGAATA +
Preference number: 6 (lower is better)
Translates to: SSSERGVRTISGKKG*EVWIRTGALLALRI
Trigger: TATTCGCAGTGCTAAAAGTGCTCCTGTTCTGATCCATACTTCCAAACCCTTCTTGCCTGATATTGTTCTCACTCCCCTTTCTGATGAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219432.2
CDS TCA 72 bp ATGCTATCACCAACTTCCAGAGAAGACTCTCTACTATaGGTATCAGTGAGGTGGCTCTCAGTGGATCTAGTT +
Preference number: 6 (lower is better)
Translates to: MLSPTSREDSLL*VSVRWLSVDLV
Trigger: AACTAGATCCACTGAGAGCCACCTCACTGATACTCATAGTAGAGAGTCTTCTCTGGAAGTTGGTGATAGCAT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CAA 72 bp GAAAGGGGAGTGAGAACAATATCAGGCAAGAAGGGTTaGGAAGTATGGATCAGAACAGGAGCACTTTTAGCA +
Preference number: 6 (lower is better)
Translates to: ERGVRTISGKKG*EVWIRTGALLA
Trigger: TGCTAAAAGTGCTCCTGTTCTGATCCATACTTCCAAACCCTTCTTGCCTGATATTGTTCTCACTCCCCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219432.2
CDS TCA 72 bp CTCTTAGTTGGAGAAAGCTTGCTAGTGTTTGAAACATaGGGCATTCTGCGGCTTACCGGTGTTTTTAATGCA +
Preference number: 6 (lower is better)
Translates to: LLVGESLLVFET*GILRLTGVFNA
Trigger: TGCATTAAAAACACCGGTAAGCCGCAGAATGCCTCATGTTTCAAACACTAGCAAGCTTTCTCCAACTAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS GCA 72 bp TCCTTCAAGGTCAATGTACTGGATTTGATCCAAAGCTaGATCTGCAAGTTCTACTGGACCTATCAAATGGCA +
Preference number: 6 (lower is better)
Translates to: SFKVNVLDLIQS*ICKFYWTYQMA
Trigger: TGCCATTTGATAGGTCCAGTAGAACTTGCAGATGCAGCTTTGGATCAAATCCAGTACATTGACCTTGAAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CAA 90 bp AGAAGAAAGAAGGTCATCGTCTCCTTCAAGGTCAATGTACTGGATTaGATCCAAAGCTGCATCTGCAAGTTCTACTGGACCTATCAAATG +
Preference number: 6 (lower is better)
Translates to: RRKKVIVSFKVNVLD*IQSCICKFYWTYQM
Trigger: CATTTGATAGGTCCAGTAGAACTTGCAGATGCAGCTTTGGATCAAATCCAGTACATTGACCTTGAAGGAGACGATGACCTTCTTTCTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 72 bp CGTTTCTTAGCGGCAATTTTCATGATTTTGGCCCTATaGGTTACTGTTTCAGACAAGCTCCTCTTAGTTGGA +
Preference number: 6 (lower is better)
Translates to: RFLAAIFMILAL*VTVSDKLLLVG
Trigger: TCCAACTAAGAGGAGCTTGTCTGAAACAGTAACTCATAGGGCCAAAATCATGAAAATTGCCGCTAAGAAACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS GCA 72 bp AAGGTCAATGTACTGGATTTGATCCAAAGCTGCATCTaGAAGTTCTACTGGACCTATCAAATGGCAAAGATG +
Preference number: 6 (lower is better)
Translates to: KVNVLDLIQSCI*KFYWTYQMAKM
Trigger: CATCTTTGCCATTTGATAGGTCCAGTAGAACTTGCAGATGCAGCTTTGGATCAAATCCAGTACATTGACCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS TCA 72 bp GGCTTTGGTCTGATCTGTGGGATATCAAGTACAGGATaGTACAAACTATTCTCCTTGCAAATGTTTGGGAAA +
Preference number: 6 (lower is better)
Translates to: GFGLICGISSTG*YKLFSLQMFGK
Trigger: TTTCCCAAACATTTGCAAGGAGAATAGTTTGTATCATCCTGTACTTGATATCCCACAGATCAGACCAAAGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000219432.2
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS GCA 72 bp CTACTGGACCTATCAAATGGCAAAGATGGTCATATATaGTATCACCAACTTCCAGAGAAGACTCTCTACTAT +
Preference number: 6 (lower is better)
Translates to: LLDLSNGKDGHI*YHQLPEKTLYY
Trigger: ATAGTAGAGAGTCTTCTCTGGAAGTTGGTGATAGCATATATGACCATCTTTGCCATTTGATAGGTCCAGTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CCA 72 bp TTCAGCATCCTTCTTTATCATCACATAATGAGGCTTTaGTCTGATCTGTGGGATATCAAGTACAGGATGATA +
Preference number: 6 (lower is better)
Translates to: FSILLYHHIMRL*SDLWDIKYRMI
Trigger: TATCATCCTGTACTTGATATCCCACAGATCAGACCAAAGCCTCATTATGTGATGATAAAGAAGGATGCTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000085385.7
ENSMUST00000110687.8
ENSMUST00000219432.2
ENSMUST00000220367.2
ENSMUST00000226244.2
CDS TCA 72 bp AATTGGACAGACTCGGTAGATGGTCTAAAAGTAACATaGACACTATTTCGTTTCTTAGCGGCAATTTTCATG +
Preference number: 6 (lower is better)
Translates to: NWTDSVDGLKVT*TLFRFLAAIFM
Trigger: CATGAAAATTGCCGCTAAGAAACGAAATAGTGTTCATGTTACTTTTAGACCATCTACCGAGTCTGTCCAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2
CDS CCA 72 bp TTCCAGAGGATTATAAAATTGGACAGACTCGGTAGATaGTCTAAAAGTAACATGAACACTATTTCGTTTCTT +
Preference number: 6 (lower is better)
Translates to: FQRIIKLDRLGR*SKSNMNTISFL
Trigger: AAGAAACGAAATAGTGTTCATGTTACTTTTAGACCATCTACCGAGTCTGTCCAATTTTATAATCCTCTGGAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226244.2