Pregenerated sensors for RALB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004451Ensembl transcript IDs: ENSMUST00000004565.15, ENSMUST00000142945.3
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGAGAGCGAATGGGGAGCCAGCTGGGAGGCCACCTCCGGCTCGCTaGGCTGCAGTGTGGCCCACTCTGCTGCGTCAGTCTGCAGCCCGC | + |
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Preference number: 1 (lower is better) Translates to: WRANGEPAGRPPPAR*AAVWPTLLRQSAAR Trigger: GCGGGCTGCAGACTGACGCAGCAGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTCCCCATTCGCTCTCCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 90 bp | GAAGTGATAGTGAATGCAGTTGTGGAGAGCGAATGGGGAGCCAGCTaGGAGGCCACCTCCGGCTCGCTGCGCTGCAGTGTGGCCCACTCT | + |
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Preference number: 1 (lower is better) Translates to: EVIVNAVVESEWGAS*EATSGSLRCSVAHS Trigger: AGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTCCCCATTCGCTCTCCACAACTGCATTCACTATCACTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 90 bp | GTCCCATCTCAAGAAGTGATAGTGAATGCAGTTGTGGAGAGCGAATaGGGAGCCAGCTGGGAGGCCACCTCCGGCTCGCTGCGCTGCAGT | + |
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Preference number: 1 (lower is better) Translates to: VPSQEVIVNAVVESE*GASWEATSGSLRCS Trigger: ACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTCCCCATTCGCTCTCCACAACTGCATTCACTATCACTTCTTGAGATGGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 90 bp | CCCCTTCCCTGGGAAGAAGCTCAACAGAGAGTGAGTGTGAGCCTCTaGTGGCACTCATCTCAGTGCCACCAGAACCAGCTGCCAGGAGCT | + |
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Preference number: 1 (lower is better) Translates to: PLPWEEAQQRVSVSL*WHSSQCHQNQLPGA Trigger: AGCTCCTGGCAGCTGGTTCTGGTGGCACTGAGATGAGTGCCACCAGAGGCTCACACTCACTCTCTGTTGAGCTTCTTCCCAGGGAAGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 90 bp | CTTCCCTGGGAAGAAGCTCAACAGAGAGTGAGTGTGAGCCTCTGGTaGCACTCATCTCAGTGCCACCAGAACCAGCTGCCAGGAGCTACA | + |
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Preference number: 1 (lower is better) Translates to: LPWEEAQQRVSVSLW*HSSQCHQNQLPGAT Trigger: TGTAGCTCCTGGCAGCTGGTTCTGGTGGCACTGAGATGAGTGCCACCAGAGGCTCACACTCACTCTCTGTTGAGCTTCTTCCCAGGGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR GCA 90 bp | GAGCCTTCCCTTCATCTGCTTGTGAAGAGAGAGTCACTGGGAGTCTaGAGAGGTAGCTGGTGCTGGCCCTACGTTCTGAGTCATAATTTG | + |
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Preference number: 1 (lower is better) Translates to: EPSLHLLVKRESLGV*RGSWCWPYVLSHNL Trigger: CAAATTATGACTCAGAACGTAGGGCCAGCACCAGCTACCTCTGCAGACTCCCAGTGACTCTCTCTTCACAAGCAGATGAAGGGAAGGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 90 bp | CATCTGCTTGTGAAGAGAGAGTCACTGGGAGTCTGCAGAGGTAGCTaGTGCTGGCCCTACGTTCTGAGTCATAATTTGAACTGGTCACAG | + |
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Preference number: 1 (lower is better) Translates to: HLLVKRESLGVCRGS*CWPYVLSHNLNWSQ Trigger: CTGTGACCAGTTCAAATTATGACTCAGAACGTAGGGCCAGCACCAGCTACCTCTGCAGACTCCCAGTGACTCTCTCTTCACAAGCAGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR GCA 90 bp | CTGCTTGTGAAGAGAGAGTCACTGGGAGTCTGCAGAGGTAGCTGGTaGTGGCCCTACGTTCTGAGTCATAATTTGAACTGGTCACAGTTT | + |
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Preference number: 1 (lower is better) Translates to: LLVKRESLGVCRGSW*WPYVLSHNLNWSQF Trigger: AAACTGTGACCAGTTCAAATTATGACTCAGAACGTAGGGCCAGCACCAGCTACCTCTGCAGACTCCCAGTGACTCTCTCTTCACAAGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR TCA 90 bp | ACAGAGGCATTACACAGACAAAGGCGTCTTTCTTCTGCCAGCCACTaGCGCACGGATATCTGTCCCATCTCAAGAAGTGATAGTGAATGC | + |
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Preference number: 1 (lower is better) Translates to: TEALHRQRRLSSASH*RTDICPISRSDSEC Trigger: GCATTCACTATCACTTCTTGAGATGGGACAGATATCCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTAATGCCTCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 90 bp | TTTCTAAATAAGGGTGTTGAGGAGGGAAAGCCCACAGCCAGCACCTaGCTGGCATTTAAATATGAAGAGAACAGCGTCCCACTTTCTCTA | + |
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Preference number: 1 (lower is better) Translates to: FLNKGVEEGKPTAST*LAFKYEENSVPLSL Trigger: TAGAGAAAGTGGGACGCTGTTCTCTTCATATTTAAATGCCAGCCAGGTGCTGGCTGTGGGCTTTCCCTCCTCAACACCCTTATTTAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 90 bp | ATGAAGAGAACAGCGTCCCACTTTCTCTACAAACGCCAGGAAGCTTaGTTCAGCCTATCTGGCCCAAGTGAAGTTCATCTTTCTAAATCT | + |
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Preference number: 1 (lower is better) Translates to: MKRTASHFLYKRQEA*FSLSGPSEVHLSKS Trigger: AGATTTAGAAAGATGAACTTCACTTGGGCCAGATAGGCTGAACCAAGCTTCCTGGCGTTTGTAGAGAAAGTGGGACGCTGTTCTCTTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR GCA 90 bp | AGCCCCCTGTCCCAGAATCCCCTTCCCTGGGAAGAAGCTCAACAGAGAGTGAGTCCACCTCCGGCTCGCTaGGCTGCAGTGTGGCCCACT | + |
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Preference number: 2 (lower is better) Translates to: SPLSQNPLPWEEAQQRVSPPPAR*AAVWPT Trigger: AGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGG...ACTCACTCTCTGTTGAGCTTCTTCCCAGGGAAGGGGATTCTGGGACAGGGGGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR CCA 90 bp | ACAGAGAGTGAGTGTGAGCCTCTGGTGGCACTCATCTCAGTGCCACCAGAACCACGCTGCGCTGCAGTGTaGCCCACTCTGCTGCGTCAG | + |
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Preference number: 2 (lower is better) Translates to: TESECEPLVALISVPPEPRCAAV*PTLLRQ Trigger: CTGACGCAGCAGAGTGGGCCACACTGCAGCGCAGCG...TGGTTCTGGTGGCACTGAGATGAGTGCCACCAGAGGCTCACACTCACTCTCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR TCA 90 bp | GGCAGCCCCCTGTCCCAGAATCCCCTTCCCTGGGAAGAAGCTCAACAGAGAGTGTACCTTCTAGAGTTCTaGGACTACAGGGGTGCACCA | + |
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Preference number: 2 (lower is better) Translates to: GSPLSQNPLPWEEAQQRVYLLEF*DYRGAP Trigger: TGGTGCACCCCTGTAGTCTCAGAACTCTAGAAGGTA...CACTCTCTGTTGAGCTTCTTCCCAGGGAAGGGGATTCTGGGACAGGGGGCTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR CCA 90 bp | TACACAGACAAAGGCGTCTTTCTTCTGCCAGCCACTGACGCACGGATATCTGTCGTTGTGGAGAGCGAATaGGGAGCCAGCTGGGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: YTDKGVFLLPATDARISVVVESE*GASWEA Trigger: GGCCTCCCAGCTGGCTCCCCATTCGCTCTCCACAAC...GACAGATATCCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR CCA 90 bp | TACAGGAGATGCCCTTCTGAGCCTTCCCTTCATCTGCTTGTGAAGAGAGAGTCAAGCCCAGGCTGGCCTTaGGCTCAGGCTACCCTCCCT | + |
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Preference number: 2 (lower is better) Translates to: YRRCPSEPSLHLLVKRESSPGWP*AQATLP Trigger: AGGGAGGGTAGCCTGAGCCCAAGGCCAGCCTGGGCT...TGACTCTCTCTTCACAAGCAGATGAAGGGAAGGCTCAGAAGGGCATCTCCTGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR GCA 90 bp | ACAGAGAGTGAGTGTGAGCCTCTGGTGGCACTCATCTCAGTGCCACCAGAACCATGCAGAGGTAGCTGGTaGTGGCCCTACGTTCTGAGT | + |
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Preference number: 2 (lower is better) Translates to: TESECEPLVALISVPPEPCRGSW*WPYVLS Trigger: ACTCAGAACGTAGGGCCAGCACCAGCTACCTCTGCA...TGGTTCTGGTGGCACTGAGATGAGTGCCACCAGAGGCTCACACTCACTCTCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR CCA 90 bp | GTCCCACTTTCTCTACAAACGCCAGGAAGCTTGGTTCAGCCTATCTGGCCCAAGAGCTGGTGGTGGTCATaGTTCAGGAAGGGTGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: VPLSLQTPGSLVQPIWPKSWWWS*FRKGGR Trigger: TCTCCCACCCTTCCTGAACCATGACCACCACCAGCT...CTTGGGCCAGATAGGCTGAACCAAGCTTCCTGGCGTTTGTAGAGAAAGTGGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR CCA 90 bp | TACAGGAGATGCCCTTCTGAGCCTTCCCTTCATCTGCTTGTGAAGAGAGAGTCACCCACAGCCAGCACCTaGCTGGCATTTAAATATGAA | + |
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Preference number: 2 (lower is better) Translates to: YRRCPSEPSLHLLVKRESPTAST*LAFKYE Trigger: TTCATATTTAAATGCCAGCCAGGTGCTGGCTGTGGG...TGACTCTCTCTTCACAAGCAGATGAAGGGAAGGCTCAGAAGGGCATCTCCTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CAA 90 bp | GTCTGCAGAGGTAGCTGGTGCTGGCCCTACGTTCTGAGTCATAATTaGAACTGGTCACAGTTTTCAGAAGGAAGAAAAAGAACAGGCCTA | + |
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Preference number: 2 (lower is better) Translates to: VCRGSWCWPYVLSHN*NWSQFSEGRKRTGL Trigger: TAGGCCTGTTCTTTTTCTTCCTTCTGAAAACTGTGACCAGTTCAAATTATGACTCAGAACGTAGGGCCAGCACCAGCTACCTCTGCAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR GCA 90 bp | GGCAGACTCTCAAAGCTCCTGGCAAAGTTAACAGAGGCATTACACAGACAAAGGAGAAGTGATAGTGAATaGAGTTGTGGAGAGCGAATG | + |
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Preference number: 2 (lower is better) Translates to: GRLSKLLAKLTEALHRQRRSDSE*SCGERM Trigger: CATTCGCTCTCCACAACTGCATTCACTATCACTTCT...CCTTTGTCTGTGTAATGCCTCTGTTAACTTTGCCAGGAGCTTTGAGAGTCTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR-3UTR TCA 90 bp | CGGCACCTAAACATGAAATGTTCACTTCTGGAAAATAGGAGGAGTGTGTGTGCTTGTCTACTTCTAAAATaGTTAGAACTGATGAGGGGG | + |
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Preference number: 2 (lower is better) Translates to: RHLNMKCSLLENRRSVCACLLLK*LELMRG Trigger: CCCCCTCATCAGTTCTAATCATTTTAGAAGTAGACA...AGCACACACACTCCTCCTATTTTCCAGAAGTGAACATTTCATGTTTAGGTGCCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR GCA 72 bp | GGAGCCAGCTGGGAGGCCACCTCCGGCTCGCTGCGCTaGAGTGTGGCCCACTCTGCTGCGTCAGTCTGCAGC | + |
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Preference number: 3 (lower is better) Translates to: GASWEATSGSLR*SVAHSAASVCS Trigger: GCTGCAGACTGACGCAGCAGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR GCA 72 bp | AATGGGGAGCCAGCTGGGAGGCCACCTCCGGCTCGCTaGGCTGCAGTGTGGCCCACTCTGCTGCGTCAGTCT | + |
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Preference number: 3 (lower is better) Translates to: NGEPAGRPPPAR*AAVWPTLLRQS Trigger: AGACTGACGCAGCAGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTCCCCATT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 72 bp | CAAGAAGTGATAGTGAATGCAGTTGTGGAGAGCGAATaGGGAGCCAGCTGGGAGGCCACCTCCGGCTCGCTG | + |
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Preference number: 3 (lower is better) Translates to: QEVIVNAVVESE*GASWEATSGSL Trigger: CAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTCCCCATTCGCTCTCCACAACTGCATTCACTATCACTTCTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 72 bp | CCAGCAGAAGAGCCCTGCCTTTCCACACAGCTGTCATaGACAGGAAGAGCCTGTCACCGTCGCCGGATCTCT | + |
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Preference number: 3 (lower is better) Translates to: PAEEPCLSTQLS*TGRACHRRRIS Trigger: AGAGATCCGGCGACGGTGACAGGCTCTTCCTGTCCATGACAGCTGTGTGGAAAGGCAGGGCTCTTCTGCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| 3UTR GCA 72 bp | GTGCCACCAGAACCAGCTGCCAGGAGCTACAGGAGATaGCCTTCTGAGCCTTCCCTTCATCTGCTTGTGAAG | + |
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Preference number: 3 (lower is better) Translates to: VPPEPAARSYRR*PSEPSLHLLVK Trigger: CTTCACAAGCAGATGAAGGGAAGGCTCAGAAGGGCATCTCCTGTAGCTCCTGGCAGCTGGTTCTGGTGGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR GCA 72 bp | AGAGTGAGTGTGAGCCTCTGGTGGCACTCATCTCAGTaGCACCAGAACCAGCTGCCAGGAGCTACAGGAGAT | + |
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Preference number: 3 (lower is better) Translates to: RVSVSLWWHSSQ*HQNQLPGATGD Trigger: ATCTCCTGTAGCTCCTGGCAGCTGGTTCTGGTGGCACTGAGATGAGTGCCACCAGAGGCTCACACTCACTCT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR TCA 72 bp | GGAGATGCCCTTCTGAGCCTTCCCTTCATCTGCTTGTaGAGAGAGAGTCACTGGGAGTCTGCAGAGGTAGCT | + |
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Preference number: 3 (lower is better) Translates to: GDALLSLPFICL*RESHWESAEVA Trigger: AGCTACCTCTGCAGACTCCCAGTGACTCTCTCTTCACAAGCAGATGAAGGGAAGGCTCAGAAGGGCATCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR TCA 72 bp | AGAACCAGCTGCCAGGAGCTACAGGAGATGCCCTTCTaGGCCTTCCCTTCATCTGCTTGTGAAGAGAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: RTSCQELQEMPF*AFPSSACEERV Trigger: GACTCTCTCTTCACAAGCAGATGAAGGGAAGGCTCAGAAGGGCATCTCCTGTAGCTCCTGGCAGCTGGTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR GCA 72 bp | CTTCATCTGCTTGTGAAGAGAGAGTCACTGGGAGTCTaGAGAGGTAGCTGGTGCTGGCCCTACGTTCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: LHLLVKRESLGV*RGSWCWPYVLS Trigger: ACTCAGAACGTAGGGCCAGCACCAGCTACCTCTGCAGACTCCCAGTGACTCTCTCTTCACAAGCAGATGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 72 bp | AAGGGTGTTGAGGAGGGAAAGCCCACAGCCAGCACCTaGCTGGCATTTAAATATGAAGAGAACAGCGTCCCA | + |
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Preference number: 3 (lower is better) Translates to: KGVEEGKPTAST*LAFKYEENSVP Trigger: TGGGACGCTGTTCTCTTCATATTTAAATGCCAGCCAGGTGCTGGCTGTGGGCTTTCCCTCCTCAACACCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR GCA 72 bp | ACGGATATCTGTCCCATCTCAAGAAGTGATAGTGAATaGAGTTGTGGAGAGCGAATGGGGAGCCAGCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: TDICPISRSDSE*SCGERMGSQLG Trigger: TCCCAGCTGGCTCCCCATTCGCTCTCCACAACTGCATTCACTATCACTTCTTGAGATGGGACAGATATCCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR GCA 72 bp | AACAGAGGCATTACACAGACAAAGGCGTCTTTCTTCTaGCAGCCACTGACGCACGGATATCTGTCCCATCTC | + |
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Preference number: 3 (lower is better) Translates to: NRGITQTKASFF*QPLTHGYLSHL Trigger: GAGATGGGACAGATATCCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTAATGCCTCTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR GCA 72 bp | AAGAGAGAGTCACTGGGAGTCTGCAGAGGTAGCTGGTaGTGGCCCTACGTTCTGAGTCATAATTTGAACTGG | + |
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Preference number: 3 (lower is better) Translates to: KRESLGVCRGSW*WPYVLSHNLNW Trigger: CCAGTTCAAATTATGACTCAGAACGTAGGGCCAGCACCAGCTACCTCTGCAGACTCCCAGTGACTCTCTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 72 bp | AGAGAGTCACTGGGAGTCTGCAGAGGTAGCTGGTGCTaGCCCTACGTTCTGAGTCATAATTTGAACTGGTCA | + |
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Preference number: 3 (lower is better) Translates to: RESLGVCRGSWC*PYVLSHNLNWS Trigger: TGACCAGTTCAAATTATGACTCAGAACGTAGGGCCAGCACCAGCTACCTCTGCAGACTCCCAGTGACTCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 72 bp | GTGAAGAGAGAGTCACTGGGAGTCTGCAGAGGTAGCTaGTGCTGGCCCTACGTTCTGAGTCATAATTTGAAC | + |
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Preference number: 3 (lower is better) Translates to: VKRESLGVCRGS*CWPYVLSHNLN Trigger: GTTCAAATTATGACTCAGAACGTAGGGCCAGCACCAGCTACCTCTGCAGACTCCCAGTGACTCTCTCTTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR TCA 72 bp | TTACACAGACAAAGGCGTCTTTCTTCTGCCAGCCACTaGCGCACGGATATCTGTCCCATCTCAAGAAGTGAT | + |
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Preference number: 3 (lower is better) Translates to: LHRQRRLSSASH*RTDICPISRSD Trigger: ATCACTTCTTGAGATGGGACAGATATCCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CCA 72 bp | TGGTGCTGGCCCTACGTTCTGAGTCATAATTTGAACTaGTCACAGTTTTCAGAAGGAAGAAAAAGAACAGGC | + |
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Preference number: 3 (lower is better) Translates to: WCWPYVLSHNLN*SQFSEGRKRTG Trigger: GCCTGTTCTTTTTCTTCCTTCTGAAAACTGTGACCAGTTCAAATTATGACTCAGAACGTAGGGCCAGCACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR GCA 90 bp | GAGAGCGAATGGGGAGCCAGCTGGGAGGCCACCTCCGGCTCGCTGCGCTGCAGTTCGTCCACAGGCACCTaGCTCCGCTCCTCCAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: ESEWGASWEATSGSLRCSSSTGT*LRSSRS Trigger: CGACCTGGAGGAGCGGAGGCAGGTGCCTGTGGACGA...ACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTCCCCATTCGCTCTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR TCA 90 bp | GAGAGCGAATGGGGAGCCAGCTGGGAGGCCACCTCCGGCTCGCTGCGCTGCAGTCTGAAGCGTCAGGGCTaGTTTGCCGACCCCTCCACT | + |
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Preference number: 4 (lower is better) Translates to: ESEWGASWEATSGSLRCSLKRQG*FADPST Trigger: AGTGGAGGGGTCGGCAAATCAGCCCTGACGCTTCAG...ACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTCCCCATTCGCTCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR GCA 90 bp | GAGCCAGCTGGGAGGCCACCTCCGGCTCGCTGCGCTGCAGTGTGGCCCACTCTGGATGTCTCCACGTACTaGACACCCCACTCCTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: EPAGRPPPARCAAVWPTLDVSTY*TPHSSA Trigger: AGCGGAGGAGTGGGGTGTGCAGTACGTGGAGACATC...CAGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR TCA 90 bp | GAGCCAGCTGGGAGGCCACCTCCGGCTCGCTGCGCTGCAGTGTGGCCCACTCTGAAGACTCGTGCTCTGTaGTGGAGAACACCAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: EPAGRPPPARCAAVWPTLKTRAL*WRTPAE Trigger: TTCTGCTGGTGTTCTCCATCACAGAGCACGAGTCTT...CAGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR CCA 90 bp | TGGGAGGCCACCTCCGGCTCGCTGCGCTGCAGTGTGGCCCACTCTGCTGCGTCAATACCTTGTCCACATTaGCGCGGGTCTTTGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: WEATSGSLRCSVAHSAASIPCPH*RGSLQM Trigger: CATCTGCAAAGACCCGCGCCAATGTGGACAAGGTAT...TGACGCAGCAGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR GCA 90 bp | TCTCCCAGCAGAAGAGCCCTGCCTTTCCACACAGCTGTCATGGACAGGAAGAGCTCGTCCACAGGCACCTaGCTCCGCTCCTCCAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: SPSRRALPFHTAVMDRKSSSTGT*LRSSRS Trigger: CGACCTGGAGGAGCGGAGGCAGGTGCCTGTGGACGA...GCTCTTCCTGTCCATGACAGCTGTGTGGAAAGGCAGGGCTCTTCTGCTGGGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS-3UTR GCA 90 bp | CAGAGGCATTACACAGACAAAGGCGTCTTTCTTCTGCCAGCCACTGACGCACGGATTGGCGCGGGTCTTTaGAGATGTCTCCACGTACTG | + |
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Preference number: 4 (lower is better) Translates to: QRHYTDKGVFLLPATDARIGAGL*RCLHVL Trigger: CAGTACGTGGAGACATCTGCAAAGACCCGCGCCAAT...CCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTAATGCCTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR CCA 90 bp | TACACAGACAAAGGCGTCTTTCTTCTGCCAGCCACTGACGCACGGATATCTGTCAGTACCAGGGAGCCCTaGCTCTTGCCCTTGTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: YTDKGVFLLPATDARISVSTREP*LLPLLA Trigger: TGCCAACAAGGGCAAGAGCCAGGGCTCCCTGGTACT...GACAGATATCCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR TCA 90 bp | AGCCCCCTGTCCCAGAATCCCCTTCCCTGGGAAGAAGCTCAACAGAGAGTGAGTCAAACTCATCATACATaGACTGAAGCGTCAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: SPLSQNPLPWEEAQQRVSQTHHT*TEASGL Trigger: CAGCCCTGACGCTTCAGTTCATGTATGATGAGTTTG...ACTCACTCTCTGTTGAGCTTCTTCCCAGGGAAGGGGATTCTGGGACAGGGGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR GCA 90 bp | GCAGAAGAGCCCTGCCTTTCCACACAGCTGTCATGGACAGGAAGAGCCTGTCACTGGCCTGTGAGTGTCTaGCTCCTATTTCCAAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: AEEPCLSTQLSWTGRACHWPVSV*LLFPRK Trigger: CTTTCTTGGAAATAGGAGGCAGACACTCACAGGCCA...GTGACAGGCTCTTCCTGTCCATGACAGCTGTGTGGAAAGGCAGGGCTCTTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS-3UTR TCA 90 bp | CCTAGAACGAGGAGGAGTAAGTGGGCTCTTTCTTGTCATCACAACCAATATTCCACCATGATGACCTTGTaGAGTACCAGGGAGCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: PRTRRSKWALSCHHNQYSTMMTL*STREPW Trigger: CCAGGGCTCCCTGGTACTTCACAAGGTCATCATGGT...GGAATATTGGTTGTGATGACAAGAAAGAGCCCACTTACTCCTCCTCGTTCTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR TCA 90 bp | GTCCCACTTTCTCTACAAACGCCAGGAAGCTTGGTTCAGCCTATCTGGCCCAAGTCATCATACATGAACTaGAGCGTCAGGGCTGATTTG | + |
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Preference number: 4 (lower is better) Translates to: VPLSLQTPGSLVQPIWPKSSYMN*SVRADL Trigger: CAAATCAGCCCTGACGCTTCAGTTCATGTATGATGA...CTTGGGCCAGATAGGCTGAACCAAGCTTCCTGGCGTTTGTAGAGAAAGTGGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR TCA 90 bp | TACACAGACAAAGGCGTCTTTCTTCTGCCAGCCACTGACGCACGGATATCTGTCAGCAGCATCGCTCTTTaGAACTTTTCTTGCTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: YTDKGVFLLPATDARISVSSIAL*NFSCSC Trigger: GCAAGAGCAAGAAAAGTTTCAAAGAGCGATGCTGCT...GACAGATATCCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR GCA 90 bp | GTCCCACTTTCTCTACAAACGCCAGGAAGCTTGGTTCAGCCTATCTGGCCCAAGTCTTGCTGCTTTTCCTaGCGTTCTTGTCCTTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: VPLSLQTPGSLVQPIWPKSCCFS*RSCPCF Trigger: AAAACAAGGACAAGAACGGCAGGAAAAGCAGCAAGA...CTTGGGCCAGATAGGCTGAACCAAGCTTCCTGGCGTTTGTAGAGAAAGTGGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR GCA 90 bp | GCCGGATCTCTTCTTAATTATATACTAAGGGTGAAATGTGCTTTGGCAAGCATGGATGTCTCCACGTACTaGACACCCCACTCCTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: AGSLLNYILRVKCALASMDVSTY*TPHSSA Trigger: AGCGGAGGAGTGGGGTGTGCAGTACGTGGAGACATC...CATGCTTGCCAAAGCACATTTCACCCTTAGTATATAATTAAGAAGAGATCCGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS-3UTR GCA 90 bp | TACACAGACAAAGGCGTCTTTCTTCTGCCAGCCACTGACGCACGGATATCTGTCTTTTCTTGCTCTTGCTaGTTTTCCTGCCGTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: YTDKGVFLLPATDARISVFSCSC*FSCRSC Trigger: ACAAGAACGGCAGGAAAAGCAGCAAGAGCAAGAAAA...GACAGATATCCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| 3UTR CAA 72 bp | GGTAGCTGGTGCTGGCCCTACGTTCTGAGTCATAATTaGAACTGGTCACAGTTTTCAGAAGGAAGAAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: GSWCWPYVLSHN*NWSQFSEGRKR Trigger: TCTTTTTCTTCCTTCTGAAAACTGTGACCAGTTCAAATTATGACTCAGAACGTAGGGCCAGCACCAGCTACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS GCA 90 bp | ACACCCCACTCCTCCGCTTTGCCTCGGGCCTCGTCCACAGGCACCTaGCTCCGCTCCTCCAGGTCGGACTTGTTGCCCACGACCAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: TPHSSALPRASSTGT*LRSSRSDLLPTTSS Trigger: ACTGCTGGTCGTGGGCAACAAGTCCGACCTGGAGGAGCGGAGGCAGGTGCCTGTGGACGAGGCCCGAGGCAAAGCGGAGGAGTGGGGTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004565.15 ENSMUST00000142945.3 |
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| CDS-3UTR CAA 90 bp | GAGCCAGCTGGGAGGCCACCTCCGGCTCGCTGCGCTGCAGTGTGGCCCACTCTGACCAGCAGTGGGATCTaGTCCTCCTCTGACTTGACT | + |
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Preference number: 5 (lower is better) Translates to: EPAGRPPPARCAAVWPTLTSSGI*SSSDLT Trigger: AGTCAAGTCAGAGGAGGACAAGATCCCACTGCTGGT...CAGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS GCA 90 bp | ACCTTGTCCACATTGGCGCGGGTCTTTGCAGATGTCTCCACGTACTaGACACCCCACTCCTCCGCTTTGCCTCGGGCCTCGTCCACAGGC | + |
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Preference number: 5 (lower is better) Translates to: TLSTLARVFADVSTY*TPHSSALPRASSTG Trigger: GCCTGTGGACGAGGCCCGAGGCAAAGCGGAGGAGTGGGGTGTGCAGTACGTGGAGACATCTGCAAAGACCCGCGCCAATGTGGACAAGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004565.15 ENSMUST00000142945.3 |
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| CDS-3UTR CAA 90 bp | GAGCCAGCTGGGAGGCCACCTCCGGCTCGCTGCGCTGCAGTGTGGCCCACTCTGCTTTTCCTGCCGTTCTaGTCCTTGTTTTCTGACATC | + |
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Preference number: 5 (lower is better) Translates to: EPAGRPPPARCAAVWPTLLFLPF*SLFSDI Trigger: GATGTCAGAAAACAAGGACAAGAACGGCAGGAAAAG...CAGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS GCA 90 bp | CCTGCCACTGAGCACAATGACCTTGTCCACATTGGCGCGGGTCTTTaGAGATGTCTCCACGTACTGCACACCCCACTCCTCCGCTTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: PATEHNDLVHIGAGL*RCLHVLHTPLLRFA Trigger: GGCAAAGCGGAGGAGTGGGGTGTGCAGTACGTGGAGACATCTGCAAAGACCCGCGCCAATGTGGACAAGGTCATTGTGCTCAGTGGCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS-3UTR CAA 90 bp | TACACAGACAAAGGCGTCTTTCTTCTGCCAGCCACTGACGCACGGATATCTGTCCCCCACTCCTCCGCTTaGCCTCGGGCCTCGTCCACA | + |
|
Preference number: 5 (lower is better) Translates to: YTDKGVFLLPATDARISVPHSSA*PRASST Trigger: TGTGGACGAGGCCCGAGGCAAAGCGGAGGAGTGGGG...GACAGATATCCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR CAA 90 bp | GAGCCAGCTGGGAGGCCACCTCCGGCTCGCTGCGCTGCAGTGTGGCCCACTCTGTTTCTGACATCTTTTTaGCCCGGATTTCTCTCATCA | + |
|
Preference number: 5 (lower is better) Translates to: EPAGRPPPARCAAVWPTLFLTSF*PGFLSS Trigger: TGATGAGAGAAATCCGGGCAAAAAAGATGTCAGAAA...CAGAGTGGGCCACACTGCAGCGCAGCGAGCCGGAGGTGGCCTCCCAGCTGGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR CAA 90 bp | AGCCCTGCCTTTCCACACAGCTGTCATGGACAGGAAGAGCCTGTCACCGTCGCCATGACCTTGTCCACATaGGCGCGGGTCTTTGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: SPAFPHSCHGQEEPVTVAMTLST*ARVFAD Trigger: ATCTGCAAAGACCCGCGCCAATGTGGACAAGGTCAT...GGCGACGGTGACAGGCTCTTCCTGTCCATGACAGCTGTGTGGAAAGGCAGGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS-3UTR CAA 90 bp | CTCTCTCCCAGCAGAAGAGCCCTGCCTTTCCACACAGCTGTCATGGACAGGAAGCTGAGCACAATGACCTaGTCCACATTGGCGCGGGTC | + |
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Preference number: 5 (lower is better) Translates to: LSPSRRALPFHTAVMDRKLSTMT*STLARV Trigger: GACCCGCGCCAATGTGGACAAGGTCATTGTGCTCAG...CTTCCTGTCCATGACAGCTGTGTGGAAAGGCAGGGCTCTTCTGCTGGGAGAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS-3UTR CAA 90 bp | CAGCAGAAGAGCCCTGCCTTTCCACACAGCTGTCATGGACAGGAAGAGCCTGTCACCAGCAGTGGGATCTaGTCCTCCTCTGACTTGACT | + |
|
Preference number: 5 (lower is better) Translates to: QQKSPAFPHSCHGQEEPVTSSGI*SSSDLT Trigger: AGTCAAGTCAGAGGAGGACAAGATCCCACTGCTGGT...GACAGGCTCTTCCTGTCCATGACAGCTGTGTGGAAAGGCAGGGCTCTTCTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS-3UTR CAA 90 bp | GCAGAAGAGCCCTGCCTTTCCACACAGCTGTCATGGACAGGAAGAGCCTGTCACTTGTCCTCCTCTGACTaGACTCGGAGAATCTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: AEEPCLSTQLSWTGRACHLSSSD*TRRICS Trigger: GGAACAGATTCTCCGAGTCAAGTCAGAGGAGGACAA...GTGACAGGCTCTTCCTGTCCATGACAGCTGTGTGGAAAGGCAGGGCTCTTCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS GCA 90 bp | TCTCATCAGATCAAAGAATACCTTGTCCACATTGGCGCGGGTCTTTaGAGATGTCTCCACGTACTGCACACCCCACTCCTCCGCTTTGCC | + |
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Preference number: 5 (lower is better) Translates to: SHQIKEYLVHIGAGL*RCLHVLHTPLLRFA Trigger: GGCAAAGCGGAGGAGTGGGGTGTGCAGTACGTGGAGACATCTGCAAAGACCCGCGCCAATGTGGACAAGGTATTCTTTGATCTGATGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR CAA 90 bp | TACACAGACAAAGGCGTCTTTCTTCTGCCAGCCACTGACGCACGGATATCTGTCAATACCTTGTCCACATaGGCGCGGGTCTTTGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: YTDKGVFLLPATDARISVNTLST*ARVFAD Trigger: ATCTGCAAAGACCCGCGCCAATGTGGACAAGGTATT...GACAGATATCCGTGCGTCAGTGGCTGGCAGAAGAAAGACGCCTTTGTCTGTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR CAA 90 bp | GGCTCCCGCTCTCCCCACCCAGATTCACATTCGGCACCTAAACATGAAATGTTCAAACTTTTCTTGCTCTaGCTGCTTTTCCTGCCGTTC | + |
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Preference number: 5 (lower is better) Translates to: GSRSPHPDSHSAPKHEMFKLFLL*LLFLPF Trigger: GAACGGCAGGAAAAGCAGCAAGAGCAAGAAAAGTTT...GAACATTTCATGTTTAGGTGCCGAATGTGAATCTGGGTGGGGAGAGCGGGAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS-3UTR CAA 90 bp | CGAGGAGGAGTAAGTGGGCTCTTTCTTGTCATCACAACCAATATTCCTGATCTCTTGTCCTCCTCTGACTaGACTCGGAGAATCTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: RGGVSGLFLVITTNIPDLLSSSD*TRRICS Trigger: GGAACAGATTCTCCGAGTCAAGTCAGAGGAGGACAA...GAGATCAGGAATATTGGTTGTGATGACAAGAAAGAGCCCACTTACTCCTCCTCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS GCA 72 bp | ATGTCTCCACGTACTGCACACCCCACTCCTCCGCTTTaGCTCGGGCCTCGTCCACAGGCACCTGCCTCCGCT | + |
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Preference number: 6 (lower is better) Translates to: MSPRTAHPTPPL*LGPRPQAPASA Trigger: AGCGGAGGCAGGTGCCTGTGGACGAGGCCCGAGGCAAAGCGGAGGAGTGGGGTGTGCAGTACGTGGAGACAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004565.15 ENSMUST00000142945.3 |
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| CDS GCA 72 bp | CAGGCACCTGCCTCCGCTCCTCCAGGTCGGACTTGTTaGCCACGACCAGCAGTGGGATCTTGTCCTCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: QAPASAPPGRTC*PRPAVGSCPPL Trigger: CAGAGGAGGACAAGATCCCACTGCTGGTCGTGGGCAACAAGTCCGACCTGGAGGAGCGGAGGCAGGTGCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004565.15 ENSMUST00000142945.3 |
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| CDS GCA 72 bp | ACATTGGCGCGGGTCTTTGCAGATGTCTCCACGTACTaGACACCCCACTCCTCCGCTTTGCCTCGGGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: TLARVFADVSTY*TPHSSALPRAS Trigger: CGAGGCCCGAGGCAAAGCGGAGGAGTGGGGTGTGCAGTACGTGGAGACATCTGCAAAGACCCGCGCCAATGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004565.15 ENSMUST00000142945.3 |
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| CDS CAA 72 bp | ACAGGCACCTGCCTCCGCTCCTCCAGGTCGGACTTGTaGCCCACGACCAGCAGTGGGATCTTGTCCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: TGTCLRSSRSDL*PTTSSGILSSS Trigger: AGAGGAGGACAAGATCCCACTGCTGGTCGTGGGCAACAAGTCCGACCTGGAGGAGCGGAGGCAGGTGCCTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004565.15 ENSMUST00000142945.3 |
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| CDS TCA 72 bp | GTTGCCCACGACCAGCAGTGGGATCTTGTCCTCCTCTaGCTTGACTCGGAGAATCTGTTCCCTGAACTCGGC | + |
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Preference number: 6 (lower is better) Translates to: VAHDQQWDLVLL*LDSENLFPELG Trigger: GCCGAGTTCAGGGAACAGATTCTCCGAGTCAAGTCAGAGGAGGACAAGATCCCACTGCTGGTCGTGGGCAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004565.15 ENSMUST00000142945.3 |
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| CDS GCA 72 bp | GAGCACAATGACCTTGTCCACATTGGCGCGGGTCTTTaGAGATGTCTCCACGTACTGCACACCCCACTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: EHNDLVHIGAGL*RCLHVLHTPLL Trigger: GAGGAGTGGGGTGTGCAGTACGTGGAGACATCTGCAAAGACCCGCGCCAATGTGGACAAGGTCATTGTGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS CAA 72 bp | ATCAGGCAGAGTCCCCTGCCACTGAGCACAATGACCTaGTCCACATTGGCGCGGGTCTTTGCAGATGTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: IRQSPLPLSTMT*STLARVFADVS Trigger: GGAGACATCTGCAAAGACCCGCGCCAATGTGGACAAGGTCATTGTGCTCAGTGGCAGGGGACTCTGCCTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142945.3 |
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| CDS CAA 90 bp | GACTTGTTGCCCACGACCAGCAGTGGGATCTTGTCCTCCTCTGACTaGACTCGGAGAATCTGTTCCCTGAACTCGGCTGTGGCTGTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: DLLPTTSSGILSSSD*TRRICSLNSAVAVK Trigger: TTTCACAGCCACAGCCGAGTTCAGGGAACAGATTCTCCGAGTCAAGTCAGAGGAGGACAAGATCCCACTGCTGGTCGTGGGCAACAAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004565.15 ENSMUST00000142945.3 |
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| CDS GCA 72 bp | ATCAAAGAATACCTTGTCCACATTGGCGCGGGTCTTTaGAGATGTCTCCACGTACTGCACACCCCACTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: IKEYLVHIGAGL*RCLHVLHTPLL Trigger: GAGGAGTGGGGTGTGCAGTACGTGGAGACATCTGCAAAGACCCGCGCCAATGTGGACAAGGTATTCTTTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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| CDS CCA 72 bp | TTTCTCTCATCAGATCAAAGAATACCTTGTCCACATTaGCGCGGGTCTTTGCAGATGTCTCCACGTACTGCA | + |
|
Preference number: 6 (lower is better) Translates to: FLSSDQRIPCPH*RGSLQMSPRTA Trigger: TGCAGTACGTGGAGACATCTGCAAAGACCCGCGCCAATGTGGACAAGGTATTCTTTGATCTGATGAGAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004565.15 |
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