Pregenerated sensors for RALA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008859Ensembl transcript IDs: ENSMUST00000009003.9
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CATCACAGACTGACGTCTGGTCAGTATGTGCCATACATGTTTGACTaGTTCATGTTAGGAAATATTGATACAGTATTCATTATGAACATA | + |
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Preference number: 1 (lower is better) Translates to: HHRLTSGQYVPYMFD*FMLGNIDTVFIMNI Trigger: TATGTTCATAATGAATACTGTATCAATATTTCCTAACATGAAGCAGTCAAACATGTATGGCACATACTGACCAGACGTCAGTCTGTGATG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR CCA 90 bp | GGGAACTCTAATTTTGCACATGGCCTAGTCTGTGAAAATATTAAATCAAACCCTAAACACCAGAGGAAATaGTCATTTCTTCCCCGCCCC | + |
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Preference number: 2 (lower is better) Translates to: GNSNFAHGLVCENIKSNPKHQRK*SFLPRP Trigger: GGGGCGGGGAAGAAATGACCATTTCCTCTGGTGTTT...AGGGTTTGATTTAATATTTTCACAGACTAGGCCATGTGCAAAATTAGAGTTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR CAA 90 bp | AGTAGAGTTCCTGAATGCCTGTTTCTGGTAACATCATGTACACATTaGTTTCCTGGAATGCCTGAGTGTCTCCTTGACCTTATGAAATTA | + |
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Preference number: 2 (lower is better) Translates to: SRVPECLFLVTSCTH*FPGMPECLLDLMKL Trigger: TAATTTCATAAGGTCAAGGAGACACTCAGGCATTCCAGGAAACAAATGTGTACATGATGTTACCAGAAACAGGCATTCAGGAACTCTACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR CCA 90 bp | ATGAAATTAGGACTGTGCAACAAGAAAAACTGTTTAATCAAGTGTCTTAGCCCCCCAATGAAGGAGCTCTaGAACTCTAAGAACCAGAGT | + |
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Preference number: 2 (lower is better) Translates to: MKLGLCNKKNCLIKCLSPPMKEL*NSKNQS Trigger: ACTCTGGTTCTTAGAGTTCCAGAGCTCCTTCATTGG...GGGGCTAAGACACTTGATTAAACAGTTTTTCTTGTTGCACAGTCCTAATTTCAT 40% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR GCA 90 bp | GCACATGGCCTAGTCTGTGAAAATATTAAATCAAACCCTTCAAGGACAAATATTCGTCTGGTCAGTATGTaGCATACATGTTTGACTGCT | + |
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Preference number: 2 (lower is better) Translates to: AHGLVCENIKSNPSRTNIRLVSM*HTCLTA Trigger: AGCAGTCAAACATGTATGGCACATACTGACCAGACG...AATATTTGTCCTTGAAGGGTTTGATTTAATATTTTCACAGACTAGGCCATGTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR GCA 90 bp | ATGAAATTAGGACTGTGCAACAAGAAAAACTGTTTAATCAAGTGTCTTAGCCCCACATTCCTAACAGCATaGTTGAATTCTTGCAGCGGA | + |
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Preference number: 2 (lower is better) Translates to: MKLGLCNKKNCLIKCLSPTFLTA*LNSCSG Trigger: TCCGCTGCAAGAATTCAAGCATGCTGTTAGGAATGT...GGGGCTAAGACACTTGATTAAACAGTTTTTCTTGTTGCACAGTCCTAATTTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR CCA 90 bp | GGGAACTCTAATTTTGCACATGGCCTAGTCTGTGAAAATATTAAATCAAACCCTCAGACTCCTAGCAGTTaGACATTTCTCAGGAATCTT | + |
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Preference number: 2 (lower is better) Translates to: GNSNFAHGLVCENIKSNPQTPSS*TFLRNL Trigger: AAGATTCCTGAGAAATGTCCAACTGCTAGGAGTCTG...AGGGTTTGATTTAATATTTTCACAGACTAGGCCATGTGCAAAATTAGAGTTCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAAATTAGGACTGTGCAACAAGAAAAACTGTTTAATCAAGTGTCTTAGCCCCTGTGCCATACATGTTTaGCTGCTTCATGTTAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: MKLGLCNKKNCLIKCLSPCAIHV*LLHVRK Trigger: TTTCCTAACATGAAGCAGTCAAACATGTATGGCACA...GGGGCTAAGACACTTGATTAAACAGTTTTTCTTGTTGCACAGTCCTAATTTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR CCA 90 bp | ATGAAATTAGGACTGTGCAACAAGAAAAACTGTTTAATCAAGTGTCTTAGCCCCCTAAGAACCAGAGTATaGCACACATCTGTAATTTGG | + |
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Preference number: 2 (lower is better) Translates to: MKLGLCNKKNCLIKCLSPLRTRV*HTSVIW Trigger: CCAAATTACAGATGTGTGCCATACTCTGGTTCTTAG...GGGGCTAAGACACTTGATTAAACAGTTTTTCTTGTTGCACAGTCCTAATTTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR TCA 90 bp | GGGAACTCTAATTTTGCACATGGCCTAGTCTGTGAAAATATTAAATCAAACCCTAGAACACACCCAGAATaGTGTCACTGGATTATTTTT | + |
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Preference number: 2 (lower is better) Translates to: GNSNFAHGLVCENIKSNPRTHPE*CHWIIF Trigger: AAAAATAATCCAGTGACATCATTCTGGGTGTGTTCT...AGGGTTTGATTTAATATTTTCACAGACTAGGCCATGTGCAAAATTAGAGTTCCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR TCA 90 bp | GCACATGGCCTAGTCTGTGAAAATATTAAATCAAACCCTTCAAGGACAAATATTTGGTTTACTTCCCATTaGAATTACATTCCTAACAGC | + |
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Preference number: 2 (lower is better) Translates to: AHGLVCENIKSNPSRTNIWFTSH*NYIPNS Trigger: GCTGTTAGGAATGTAATTTCAATGGGAAGTAAACCA...AATATTTGTCCTTGAAGGGTTTGATTTAATATTTTCACAGACTAGGCCATGTGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR CCA 72 bp | ACACTTAAATGCGCATCACTTGCAGACAGCAATGACTaGGGACCAGCACTCTACATAAAAGGGGCATTCATT | + |
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Preference number: 3 (lower is better) Translates to: TLKCASLADSND*GPALYIKGAFI Trigger: AATGAATGCCCCTTTTATGTAGAGTGCTGGTCCCCAGTCATTGCTGTCTGCAAGTGATGCGCATTTAAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR-3UTR CAA 90 bp | GGGAACTCTAATTTTGCACATGGCCTAGTCTGTGAAAATATTAAATCAAACCCTCCCCCATCTTACCTCTaGATTAACAGTTTGAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: GNSNFAHGLVCENIKSNPPPSYL*INSLRK Trigger: CTTTCTCAAACTGTTAATCAAGAGGTAAGATGGGGG...AGGGTTTGATTTAATATTTTCACAGACTAGGCCATGTGCAAAATTAGAGTTCCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| 3UTR CAA 72 bp | CCTGAATGCCTGTTTCTGGTAACATCATGTACACATTaGTTTCCTGGAATGCCTGAGTGTCTCCTTGACCTT | + |
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Preference number: 4 (lower is better) Translates to: PECLFLVTSCTH*FPGMPECLLDL Trigger: AAGGTCAAGGAGACACTCAGGCATTCCAGGAAACAAATGTGTACATGATGTTACCAGAAACAGGCATTCAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| CDS-3UTR GCA 90 bp | GCACATGGCCTAGTCTGTGAAAATATTAAATCAAACCCTTCAAGGACAAATATTTTTACTCTTAAAATCTaGTCCCTGAAGTCCGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: AHGLVCENIKSNPSRTNIFTLKI*SLKSAV Trigger: TACCGCGGACTTCAGGGAGCAGATTTTAAGAGTAAA...AATATTTGTCCTTGAAGGGTTTGATTTAATATTTTCACAGACTAGGCCATGTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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| CDS-3UTR CAA 90 bp | ATGAAATTAGGACTGTGCAACAAGAAAAACTGTTTAATCAAGTGTCTTAGCCCCAATACCTTGTCAACGTaGGCGCGCGTTTTAGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: MKLGLCNKKNCLIKCLSPNTLST*ARVLAD Trigger: GTCTGCTAAAACGCGCGCCAACGTTGACAAGGTATT...GGGGCTAAGACACTTGATTAAACAGTTTTTCTTGTTGCACAGTCCTAATTTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009003.9 |
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