Pregenerated sensors for RAG2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032864Ensembl transcript IDs: ENSMUST00000044031.4, ENSMUST00000111227.2
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGCCATACTTCAGAGCTGCACAGTATTGGACCTTGAATGACATGTaGCTATTTCCAGAGATGACAACTGTCTTTAAGGAAGATGAGGGA | + |
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Preference number: 1 (lower is better) Translates to: MPYFRAAQYWTLNDM*LFPEMTTVFKEDEG Trigger: TCCCTCATCTTCCTTAAAGACAGTTGTCATCTCTGGAAATAGTCACATGTCATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR CCA 90 bp | CTCAGGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCGGACTCTCTTGTCTCTaGGTCAAGCAGGTCTTGGGG | + |
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Preference number: 2 (lower is better) Translates to: LRSLCMAGGNVTSALCSVGLSCL*VKQVLG Trigger: CCCCAAGACCTGCTTGACCCAGAGACAAGAGAGTCC...GACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR CAA 90 bp | GCCAGGGTACCCTCAATCCCCACTTTTGGCTCTTCTGCCCAGCTATaGGCTGTTGACATCTTTATTCACCTAATCACAAGTAACCGGGGG | + |
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Preference number: 2 (lower is better) Translates to: ARVPSIPTFGSSAQL*AVDIFIHLITSNRG Trigger: CCCCCGGTTACTTGTGATTAGGTGAATAAAGATGTCAACAGCCAATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAGGGTACCCTGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR CAA 90 bp | ATGGTCTCCTCCTACATCAAGCCAGGGTACCCTCAATCCCCACTTTaGGCTCTTCTGCCCAGCTATTGGCTGTTGACATCTTTATTCACC | + |
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Preference number: 2 (lower is better) Translates to: MVSSYIKPGYPQSPL*ALLPSYWLLTSLFT Trigger: GGTGAATAAAGATGTCAACAGCCAATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAGGGTACCCTGGCTTGATGTAGGAGGAGACCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR CCA 90 bp | CTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCAGCCTTCCTCAATCCCCACTTTTaGCTCTTCTGCCCAGCTATT | + |
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Preference number: 2 (lower is better) Translates to: LCAWQVAMLPVLCVLSAFLNPHF*LFCPAI Trigger: AATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAG...GAAGGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR GCA 90 bp | TACATCAAGCCAGGGTACCCTCAATCCCCACTTTTGGCTCTTCTGCCCAGCTATCTTCCACTTCCTAAGTaGCAGGATTACAGGCATGTA | + |
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Preference number: 2 (lower is better) Translates to: YIKPGYPQSPLLALLPSYLPLPK*QDYRHV Trigger: TACATGCCTGTAATCCTGGCACTTAGGAAGTGGAAG...ATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAGGGTACCCTGGCTTGATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR TCA 90 bp | CTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCAGCCTTCCCAGCTATTGGCTGTTaGCATCTTTATTCACCTAAT | + |
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Preference number: 2 (lower is better) Translates to: LCAWQVAMLPVLCVLSAFPAIGC*HLYSPN Trigger: ATTAGGTGAATAAAGATGTCAACAGCCAATAGCTGG...GAAGGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR CCA 90 bp | TGTGAAAGCAGTTCAGGACTTAGCAGTAGAGCCTCCTTGAGAGTGATAGTCCCATCACATAGCATTACTTaGATCTATGTGTGGACTCTC | + |
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Preference number: 2 (lower is better) Translates to: CESSSGLSSRASLRVIVPSHSIT*IYVWTL Trigger: GAGAGTCCACACATAGATCCAAGTAATGCTATGTGA...TGGGACTATCACTCTCAAGGAGGCTCTACTGCTAAGTCCTGAACTGCTTTCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR GCA 90 bp | TCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGTATTGGACCTTGAATAGACTCAGGTCTTTGTaGATGGCAGGTGGCAATGTT | + |
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Preference number: 2 (lower is better) Translates to: SLKVVMPYFRAAQYWTLNRLRSL*MAGGNV Trigger: AACATTGCCACCTGCCATGCACAAAGACCTGAGTCT...ATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR TCA 90 bp | TCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGTATTGGACCTTGAATTGTGAGGGCCCAAAGTaGGTGAGTGATTTAAACAAA | + |
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Preference number: 2 (lower is better) Translates to: SLKVVMPYFRAAQYWTLNCEGPK*VSDLNK Trigger: TTTGTTTAAATCACTCACTCACTTTGGGCCCTCACA...ATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR CCA 90 bp | TTCATATTTCACTTTTCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGTTTGTGCATGGCAGGTaGCAATGTTACCAGTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: FIFHFSLKVVMPYFRAAQFVHGR*QCYQCS Trigger: AGAGCACTGGTAACATTGCCACCTGCCATGCACAAA...CTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGAAAAGTGAAATATGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR TCA 90 bp | GTCCCAAACCTTTGTCTGAGCTCATGTTCATATTTCACTTTTCACTTAAAGTGGTTTCTACTCCACCTTTaGCCATTTAGTTCCTGGATA | + |
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Preference number: 2 (lower is better) Translates to: VPNLCLSSCSYFTFHLKWFLLHL*PFSSWI Trigger: TATCCAGGAACTAAATGGTCAAAGGTGGAGTAGAAA...CCACTTTAAGTGAAAAGTGAAATATGAACATGAGCTCAGACAAAGGTTTGGGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR CCA 72 bp | GGGGCAAGGTCACATAGCATTACTTGGATCTATGTGTaGACTCTCTTGTCTCTGGGTCAAGCAGGTCTTGGG | + |
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Preference number: 3 (lower is better) Translates to: GARSHSITWIYV*TLLSLGQAGLG Trigger: CCCAAGACCTGCTTGACCCAGAGACAAGAGAGTCCACACATAGATCCAAGTAATGCTATGTGACCTTGCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR CAA 90 bp | CTCAGGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCTCTTCTGCCCAGCTATaGGCTGTTGACATCTTTATT | + |
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Preference number: 3 (lower is better) Translates to: LRSLCMAGGNVTSALCSVSSAQL*AVDIFI Trigger: AATAAAGATGTCAACAGCCAATAGCTGGGCAGAAGA...GACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR CCA 72 bp | GCATTACTTGGATCTATGTGTGGACTCTCTTGTCTCTaGGTCAAGCAGGTCTTGGGGCTCATACACTACAAT | + |
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Preference number: 3 (lower is better) Translates to: ALLGSMCGLSCL*VKQVLGLIHYN Trigger: ATTGTAGTGTATGAGCCCCAAGACCTGCTTGACCCAGAGACAAGAGAGTCCACACATAGATCCAAGTAATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR GCA 72 bp | CAAGAAAATGTCCACAGTATTAGACTCAGGTCTTTGTaGATGGCAGGTGGCAATGTTACCAGTGCTCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: QENVHSIRLRSL*MAGGNVTSALC Trigger: ACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGAGTCTAATACTGTGGACATTTTCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR CCA 72 bp | AAAATGTCCACAGTATTAGACTCAGGTCTTTGTGCATaGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: KMSTVLDSGLCA*QVAMLPVLCVL Trigger: CAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGAGTCTAATACTGTGGACATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR-3UTR CAA 90 bp | TCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGTATTGGACCTTGAATTGGGTCAAGCAGGTCTaGGGGCTCATACACTACAAT | + |
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Preference number: 3 (lower is better) Translates to: SLKVVMPYFRAAQYWTLNWVKQV*GLIHYN Trigger: ATTGTAGTGTATGAGCCCCAAGACCTGCTTGACCCA...ATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR TCA 72 bp | GCCATACTTCAGAGCTGCACAGTATTGGACCTTGAATaGCATGTGACTATTTCCAGAGATGACAACTGTCTT | + |
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Preference number: 3 (lower is better) Translates to: AILQSCTVLDLE*HVTISRDDNCL Trigger: AAGACAGTTGTCATCTCTGGAAATAGTCACATGTCATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR TCA 72 bp | AAATTTAATCCCAATCCAGAGTTTCTACTCCACCTTTaGCCATTTAGTTCCTGGATAAAAGACACATACAAA | + |
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Preference number: 3 (lower is better) Translates to: KFNPNPEFLLHL*PFSSWIKDTYK Trigger: TTTGTATGTGTCTTTTATCCAGGAACTAAATGGTCAAAGGTGGAGTAGAAACTCTGGATTGGGATTAAATTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR GCA 90 bp | TACATCAAGCCAGGGTACCCTCAATCCCCACTTTTGGCTCTTCTGCCCAGCTATGACTGTGCAATTCACTaGTGGGGTACCCAGGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: YIKPGYPQSPLLALLPSYDCAIH*WGTQGK Trigger: CTTCCCCTGGGTACCCCAGCAGTGAATTGCACAGTC...ATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAGGGTACCCTGGCTTGATGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR CCA 90 bp | TACATCAAGCCAGGGTACCCTCAATCCCCACTTTTGGCTCTTCTGCCCAGCTATTCCAAATCCATGCACTaGGCATGTACCCAGTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: YIKPGYPQSPLLALLPSYSKSMH*ACTQCP Trigger: TGGGCACTGGGTACATGCCCAGTGCATGGATTTGGA...ATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAGGGTACCCTGGCTTGATGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR CCA 90 bp | GGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCAGCCGACAGAGATTCCTCCTaGCAAGACTGTGCAATTCAC | + |
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Preference number: 4 (lower is better) Translates to: GLCAWQVAMLPVLCVLSADRDSS*QDCAIH Trigger: GTGAATTGCACAGTCTTGCCAGGAGGAATCTCTGTC...GGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR CAA 72 bp | TCCTACATCAAGCCAGGGTACCCTCAATCCCCACTTTaGGCTCTTCTGCCCAGCTATTGGCTGTTGACATCT | + |
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Preference number: 4 (lower is better) Translates to: SYIKPGYPQSPL*ALLPSYWLLTS Trigger: AGATGTCAACAGCCAATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAGGGTACCCTGGCTTGATGTAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR TCA 90 bp | GGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCAGCCTGGTTGCTTCAGCACTaGAACAAAATTCCTCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: GLCAWQVAMLPVLCVLSAWLLQH*NKIPLS Trigger: ACTCAGAGGAATTTTGTTTCAGTGCTGAAGCAACCA...GGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR GCA 90 bp | TCAGGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCACAAAGAGAACACCCATaGTTTTCCCTCGACTATACA | + |
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Preference number: 4 (lower is better) Translates to: SGLCAWQVAMLPVLCVLSQREHP*FSLDYT Trigger: TGTATAGTCGAGGGAAAAGCATGGGTGTTCTCTTTG...TGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR GCA 90 bp | TGTGAAAGCAGTTCAGGACTTAGCAGTAGAGCCTCCTTGAGAGTGATAGTCCCATGTTTGAGTGAGGATTaGACTGGAGACAGAGATTCC | + |
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Preference number: 4 (lower is better) Translates to: CESSSGLSSRASLRVIVPCLSED*TGDRDS Trigger: GGAATCTCTGTCTCCAGTGCAATCCTCACTCAAACA...TGGGACTATCACTCTCAAGGAGGCTCTACTGCTAAGTCCTGAACTGCTTTCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR GCA 90 bp | TCAGGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCATCCCGTTTCCCATGTTaGTTCCAAACCATATTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SGLCAWQVAMLPVLCVLSSRFPC*FQTIFC Trigger: GCAAAATATGGTTTGGAAGCAACATGGGAAACGGGA...TGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR CCA 90 bp | CTCAGGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCTTTTCTGTGGTTCTCTaGGTAGAAGGCATGTATGAA | + |
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Preference number: 4 (lower is better) Translates to: LRSLCMAGGNVTSALCSVFSVVL*VEGMYE Trigger: TTCATACATGCCTTCTACCCAGAGAACCACAGAAAA...GACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR CAA 72 bp | TGTGAAAGCAGTTCAGGACTTAGCAGTAGAGCCTCCTaGAGAGTGATAGTCCCAAACCTTTGTCTGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: CESSSGLSSRAS*RVIVPNLCLSS Trigger: TGAGCTCAGACAAAGGTTTGGGACTATCACTCTCAAGGAGGCTCTACTGCTAAGTCCTGAACTGCTTTCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR TCA 90 bp | CAAGAAAATGTCCACAGTATTAGACTCAGGTCTTTGTGCATGGCAGGTGGCAATGGTAGAAGGCATGTATaGACGTCCTCCAAAGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: QENVHSIRLRSLCMAGGNGRRHV*TSSKEN Trigger: GTTCTCTTTGGAGGACGTTCATACATGCCTTCTACC...ATTGCCACCTGCCATGCACAAAGACCTGAGTCTAATACTGTGGACATTTTCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR TCA 90 bp | CAAGAAAATGTCCACAGTATTAGACTCAGGTCTTTGTGCATGGCAGGTGGCAATGAGTCTCCATCTCACTaGTTTCAATCGTGTTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: QENVHSIRLRSLCMAGGNESPSH*FQSCCP Trigger: GGGACAACACGATTGAAATCAGTGAGATGGAGACTC...ATTGCCACCTGCCATGCACAAAGACCTGAGTCTAATACTGTGGACATTTTCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR TCA 90 bp | CTCAGGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCTTGGAGACAATTTTCTaGTCTTCACTCAAATCCTCT | + |
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Preference number: 4 (lower is better) Translates to: LRSLCMAGGNVTSALCSVLETIF*SSLKSS Trigger: AGAGGATTTGAGTGAAGATCAGAAAATTGTCTCCAA...GACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR GCA 90 bp | CTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCAGCCTTCACCATCAAAACTGGTTaGTTCAGCACTGAAACAAAA | + |
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Preference number: 4 (lower is better) Translates to: LCAWQVAMLPVLCVLSAFTIKTG*FSTETK Trigger: TTTTGTTTCAGTGCTGAAGCAACCAGTTTTGATGGT...GAAGGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR CCA 90 bp | GTCCCAAACCTTTGTCTGAGCTCATGTTCATATTTCACTTTTCACTTAAAGTGGTGTGCAATTCACTGCTaGGGTACCCAGGGGAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: VPNLCLSSCSYFTFHLKWCAIHC*GTQGKV Trigger: GACCTTCCCCTGGGTACCCCAGCAGTGAATTGCACA...CCACTTTAAGTGAAAAGTGAAATATGAACATGAGCTCAGACAAAGGTTTGGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR CCA 90 bp | ACAAACTTCCTTCTTCCACTTCCTAAGTGCCAGGATTACAGGCATGTATCACCACTTCCTTCTGACAAGTaGATGAGTGTGCGTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: TNFLLPLPKCQDYRHVSPLPSDK*MSVRSS Trigger: GGAAGAACGCACACTCATCCACTTGTCAGAAGGAAG...TGGTGATACATGCCTGTAATCCTGGCACTTAGGAAGTGGAAGAAGGAAGTTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR CAA 72 bp | CCCTCAATCCCCACTTTTGGCTCTTCTGCCCAGCTATaGGCTGTTGACATCTTTATTCACCTAATCACAAGT | + |
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Preference number: 4 (lower is better) Translates to: PSIPTFGSSAQL*AVDIFIHLITS Trigger: ACTTGTGATTAGGTGAATAAAGATGTCAACAGCCAATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| 3UTR CAA 72 bp | CTTCAAGAAAATGTCCACAGTATTAGACTCAGGTCTTaGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: LQENVHSIRLRS*CMAGGNVTSAL Trigger: CAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGAGTCTAATACTGTGGACATTTTCTTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR GCA 90 bp | TCAGGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCATGCAATAATACTTGTTaGTTCCTTCTGACAAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: SGLCAWQVAMLPVLCVLSCNNTC*FLLTSG Trigger: TCCACTTGTCAGAAGGAAGCAACAAGTATTATTGCA...TGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR TCA 90 bp | ACAAACTTCCTTCTTCCACTTCCTAAGTGCCAGGATTACAGGCATGTATCACCATCATCATTGTTTGTTTaGGTGAGGATTGCACTGGAG | + |
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Preference number: 4 (lower is better) Translates to: TNFLLPLPKCQDYRHVSPSSLFV*VRIALE Trigger: CTCCAGTGCAATCCTCACTCAAACAAACAATGATGA...TGGTGATACATGCCTGTAATCCTGGCACTTAGGAAGTGGAAGAAGGAAGTTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR CCA 90 bp | CAAGAAAATGTCCACAGTATTAGACTCAGGTCTTTGTGCATGGCAGGTGGCAATGGAAAGCTCATTGTTTaGTGTTTTCCCTCCGTGAAT | + |
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Preference number: 4 (lower is better) Translates to: QENVHSIRLRSLCMAGGNGKLIV*CFPSVN Trigger: ATTCACGGAGGGAAAACACCAAACAATGAGCTTTCC...ATTGCCACCTGCCATGCACAAAGACCTGAGTCTAATACTGTGGACATTTTCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR CCA 90 bp | CATAAGTATAAACCAGAGGCCACCTTAAAATTTATAAACAGCAGTAGTGTGGGAACCACGTCAATGGAATaGCCGTATCTGGGTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: HKYKPEATLKFINSSSVGTTSME*PYLGSG Trigger: CCCTGAACCCAGATACGGCCATTCCATTGACGTGGT...TCCCACACTACTGCTGTTTATAAATTTTAAGGTGGCCTCTGGTTTATACTTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR CCA 90 bp | CAAGAAAATGTCCACAGTATTAGACTCAGGTCTTTGTGCATGGCAGGTGGCAATTCTATCAAGAAAACATaGGGTAGGCAGTCAGCTACA | + |
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Preference number: 4 (lower is better) Translates to: QENVHSIRLRSLCMAGGNSIKKT*GRQSAT Trigger: TGTAGCTGACTGCCTACCCCATGTTTTCTTGATAGA...ATTGCCACCTGCCATGCACAAAGACCTGAGTCTAATACTGTGGACATTTTCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR TCA 90 bp | TCACAAACTTCCTTCTTCCACTTCCTAAGTGCCAGGATTACAGGCATGTATCACTTTTCCCTCCGTGAATaGTATATTGATGCTTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: SQTSFFHFLSARITGMYHFSLRE*YIDACQ Trigger: CTGACAAGCATCAATATATCATTCACGGAGGGAAAA...GTGATACATGCCTGTAATCCTGGCACTTAGGAAGTGGAAGAAGGAAGTTTGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR TCA 90 bp | CAAGAAAATGTCCACAGTATTAGACTCAGGTCTTTGTGCATGGCAGGTGGCAATTTCTGGGAGAATATATaGTGTAGCACACCCAAATTC | + |
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Preference number: 4 (lower is better) Translates to: QENVHSIRLRSLCMAGGNFWENI*CSTPKF Trigger: GAATTTGGGTGTGCTACATCATATATTCTCCCAGAA...ATTGCCACCTGCCATGCACAAAGACCTGAGTCTAATACTGTGGACATTTTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR TCA 90 bp | CAAGAAAATGTCCACAGTATTAGACTCAGGTCTTTGTGCATGGCAGGTGGCAATGAAATAGAATGCTTCTaGCATAGCCTGCTTATTGTC | + |
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Preference number: 4 (lower is better) Translates to: QENVHSIRLRSLCMAGGNEIECF*HSLLIV Trigger: GACAATAAGCAGGCTATGTCAGAAGCATTCTATTTC...ATTGCCACCTGCCATGCACAAAGACCTGAGTCTAATACTGTGGACATTTTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
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| CDS-3UTR TCA 90 bp | ACAAACTTCCTTCTTCCACTTCCTAAGTGCCAGGATTACAGGCATGTATCACCATCTTCTGTTGATGTCTaGCTGTTGGAGACAATTTTC | + |
|
Preference number: 4 (lower is better) Translates to: TNFLLPLPKCQDYRHVSPSSVDV*LLETIF Trigger: GAAAATTGTCTCCAACAGTCAGACATCAACAGAAGA...TGGTGATACATGCCTGTAATCCTGGCACTTAGGAAGTGGAAGAAGGAAGTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR GCA 90 bp | TGTGAAAGCAGTTCAGGACTTAGCAGTAGAGCCTCCTTGAGAGTGATAGTCCCAAACCATATTTTGCTATaGTTAATATCTGAGGTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: CESSSGLSSRASLRVIVPNHILL*LISEVQ Trigger: CTGGACCTCAGATATTAAGCATAGCAAAATATGGTT...TGGGACTATCACTCTCAAGGAGGCTCTACTGCTAAGTCCTGAACTGCTTTCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR GCA 90 bp | TCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGTATTGGACCTTGAATGCTTCTGACATAGCCTaGTTATTGTCTCCTGGTATG | + |
|
Preference number: 4 (lower is better) Translates to: SLKVVMPYFRAAQYWTLNASDIA*LLSPGM Trigger: CATACCAGGAGACAATAAGCAGGCTATGTCAGAAGC...ATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR CCA 90 bp | CATAAGTATAAACCAGAGGCCACCTTAAAATTTATAAACAGCAGTAGTGTGGGAAGTCTTCAAAGGGAGTaGAGTCCCCAGGATCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: HKYKPEATLKFINSSSVGSLQRE*SPQDLL Trigger: CAGAAGATCCTGGGGACTCCACTCCCTTTGAAGACT...TCCCACACTACTGCTGTTTATAAATTTTAAGGTGGCCTCTGGTTTATACTTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR TCA 90 bp | TCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGTATTGGACCTTGAATGAAACAAAATTCCTCTaGGTCTTCAAAGGGAGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: SLKVVMPYFRAAQYWTLNETKFL*VFKGSG Trigger: TCCACTCCCTTTGAAGACTCAGAGGAATTTTGTTTC...ATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR TCA 90 bp | CATAAGTATAAACCAGAGGCCACCTTAAAATTTATAAACAGCAGTAGTGTGGGACATTGTTTGTTTGAGTaGGGATTGCACTGGAGACAG | + |
|
Preference number: 4 (lower is better) Translates to: HKYKPEATLKFINSSSVGHCLFE*GLHWRQ Trigger: CTGTCTCCAGTGCAATCCTCACTCAAACAAACAATG...TCCCACACTACTGCTGTTTATAAATTTTAAGGTGGCCTCTGGTTTATACTTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR TCA 90 bp | ATTACAGGCATGTATCACCATCACCATGCCTGGCTTGATATAGAATTAAATTTTTCATGGCGGGTTTATTaGGCTCCGTTGAATAGAACG | + |
|
Preference number: 4 (lower is better) Translates to: ITGMYHHHHAWLDIELNFSWRVY*APLNRT Trigger: CGTTCTATTCAACGGAGCTCAATAAACCCGCCATGA...AAAATTTAATTCTATATCAAGCCAGGCATGGTGATGGTGATACATGCCTGTAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR CCA 90 bp | TTCATATTTCACTTTTCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGTGGATAACGAAGAGGTaGGAGGTAGCAGGAATCTTT | + |
|
Preference number: 4 (lower is better) Translates to: FIFHFSLKVVMPYFRAAQWITKR*EVAGIF Trigger: AAAGATTCCTGCTACCTCCCACCTCTTCGTTATCCA...CTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGAAAAGTGAAATATGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR TCA 90 bp | TTCATATTTCACTTTTCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGATTAAGGCTATGTTATaGCCCACTGTTACCATCTGC | + |
|
Preference number: 4 (lower is better) Translates to: FIFHFSLKVVMPYFRAAQIKAML*PTVTIC Trigger: GCAGATGGTAACAGTGGGTCATAACATAGCCTTAAT...CTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGAAAAGTGAAATATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR GCA 90 bp | TCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGTATTGGACCTTGAATAGTTTGCAATGCTCTTaGTATCTGTACATGTTCATT | + |
|
Preference number: 4 (lower is better) Translates to: SLKVVMPYFRAAQYWTLNSLQCS*YLYMFI Trigger: AATGAACATGTACAGATAGCAAGAGCATTGCAAACT...ATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR GCA 90 bp | ATTACAGGCATGTATCACCATCACCATGCCTGGCTTGATATAGAATTAAATTTTTTTGGGAGTTTGCAATaGTCTTGCTATCTGTACATG | + |
|
Preference number: 4 (lower is better) Translates to: ITGMYHHHHAWLDIELNFFGSLQ*SCYLYM Trigger: CATGTACAGATAGCAAGAGCATTGCAAACTCCCAAA...AAAATTTAATTCTATATCAAGCCAGGCATGGTGATGGTGATACATGCCTGTAAT 37% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR CCA 90 bp | TTCATATTTCACTTTTCACTTAAAGTGGTAATGCCATACTTCAGAGCTGCACAGTTGATGTCTGACTGTTaGAGACAATTTTCTGATCTT | + |
|
Preference number: 4 (lower is better) Translates to: FIFHFSLKVVMPYFRAAQLMSDC*RQFSDL Trigger: AAGATCAGAAAATTGTCTCCAACAGTCAGACATCAA...CTGTGCAGCTCTGAAGTATGGCATTACCACTTTAAGTGAAAAGTGAAATATGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR CAA 90 bp | GGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCAGCCCCCCAGGATCTTCTGTaGATGTCTGACTGTTGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: GLCAWQVAMLPVLCVLSAPQDLL*MSDCWR Trigger: TCTCCAACAGTCAGACATCAACAGAAGATCCTGGGG...GGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACC 52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS CCA 90 bp | ATTGTTTGTTTGAGTGAGGATTGCACTGGAGACAGAGATTCCTCCTaGCAAGACTGTGCAATTCACTGCTGGGGTACCCAGGGGAAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: IVCLSEDCTGDRDSS*QDCAIHCWGTQGKV Trigger: GACCTTCCCCTGGGTACCCCAGCAGTGAATTGCACAGTCTTGCCAGGAGGAATCTCTGTCTCCAGTGCAATCCTCACTCAAACAAACAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS-3UTR CAA 90 bp | CTCAGGTCTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCTGTGGAGGGATTTCATaGGAGGTTTTTGTAAGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: LRSLCMAGGNVTSALCSVCGGIS*EVFVRG Trigger: CCCCCTTACAAAAACCTCCAATGAAATCCCTCCACA...GACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS CCA 90 bp | TGCTTTTCCCTCGACTATACACCACGTCAATGGAATGGCCGTATCTaGGTTCAGGGACATCTCCTACTAAGTCTTTCTCTGTGCAACGGA | + |
|
Preference number: 5 (lower is better) Translates to: CFSLDYTPRQWNGRI*VQGHLLLSLSLCNG Trigger: TCCGTTGCACAGAGAAAGACTTAGTAGGAGATGTCCCTGAACCCAGATACGGCCATTCCATTGACGTGGTGTATAGTCGAGGGAAAAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 90 bp | AGAACACCCATGCTTTTCCCTCGACTATACACCACGTCAATGGAATaGCCGTATCTGGGTTCAGGGACATCTCCTACTAAGTCTTTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: RTPMLFPRLYTTSME*PYLGSGTSPTKSFS Trigger: AGAGAAAGACTTAGTAGGAGATGTCCCTGAACCCAGATACGGCCATTCCATTGACGTGGTGTATAGTCGAGGGAAAAGCATGGGTGTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 90 bp | CAAAGAGAACACCCATGCTTTTCCCTCGACTATACACCACGTCAATaGAATGGCCGTATCTGGGTTCAGGGACATCTCCTACTAAGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: QREHPCFSLDYTPRQ*NGRIWVQGHLLLSL Trigger: AAGACTTAGTAGGAGATGTCCCTGAACCCAGATACGGCCATTCCATTGACGTGGTGTATAGTCGAGGGAAAAGCATGGGTGTTCTCTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 90 bp | TGGGGTAGGCAGTCAGCTACACTATTCCATTTTTCTGTGGTTCTCTaGGTAGAAGGCATGTATGAACGTCCTCCAAAGAGAACACCCATG | + |
|
Preference number: 5 (lower is better) Translates to: WGRQSATLFHFSVVL*VEGMYERPPKRTPM Trigger: CATGGGTGTTCTCTTTGGAGGACGTTCATACATGCCTTCTACCCAGAGAACCACAGAAAAATGGAATAGTGTAGCTGACTGCCTACCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS-3UTR CAA 90 bp | TGTGAAAGCAGTTCAGGACTTAGCAGTAGAGCCTCCTTGAGAGTGATAGTCCCAGAGTCTATGCTGCCTTaGTATGAGCAAGTAGCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: CESSSGLSSRASLRVIVPESMLP*YEQVAG Trigger: TCCAGCTACTTGCTCATACAAAGGCAGCATAGACTC...TGGGACTATCACTCTCAAGGAGGCTCTACTGCTAAGTCCTGAACTGCTTTCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR CAA 90 bp | TACATCAAGCCAGGGTACCCTCAATCCCCACTTTTGGCTCTTCTGCCCAGCTATAACGGAACCCAGGTATaGATGTCAACATCACAAGTA | + |
|
Preference number: 5 (lower is better) Translates to: YIKPGYPQSPLLALLPSYNGTQV*MSTSQV Trigger: TACTTGTGATGTTGACATCAATACCTGGGTTCCGTT...ATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAGGGTACCCTGGCTTGATGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR CAA 90 bp | CTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCAGCCTTCGTTTCTTTTGGGAGTTaGCAATGCTCTTGCTATCTG | + |
|
Preference number: 5 (lower is better) Translates to: LCAWQVAMLPVLCVLSAFVSFGS*QCSCYL Trigger: CAGATAGCAAGAGCATTGCAAACTCCCAAAAGAAAC...GAAGGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR CAA 90 bp | TCACAAACTTCCTTCTTCCACTTCCTAAGTGCCAGGATTACAGGCATGTATCACGACATAGCCTGCTTATaGTCTCCTGGTATGCCAAGG | + |
|
Preference number: 5 (lower is better) Translates to: SQTSFFHFLSARITGMYHDIACL*SPGMPR Trigger: CCTTGGCATACCAGGAGACAATAAGCAGGCTATGTC...GTGATACATGCCTGTAATCCTGGCACTTAGGAAGTGGAAGAAGGAAGTTTGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR CAA 90 bp | TGTGAAAGCAGTTCAGGACTTAGCAGTAGAGCCTCCTTGAGAGTGATAGTCCCATTCCCAGAGCCTTTTTaGTGGAGGGATTTCATTGGA | + |
|
Preference number: 5 (lower is better) Translates to: CESSSGLSSRASLRVIVPFPEPF*WRDFIG Trigger: TCCAATGAAATCCCTCCACAAAAAAGGCTCTGGGAA...TGGGACTATCACTCTCAAGGAGGCTCTACTGCTAAGTCCTGAACTGCTTTCACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS CCA 90 bp | CAAAGGGAGTGGAGTCCCCAGGATCTTCTGTTGATGTCTGACTGTTaGAGACAATTTTCTGATCTTCACTCAAATCCTCTTCAGAGCATC | + |
|
Preference number: 5 (lower is better) Translates to: QREWSPQDLLLMSDC*RQFSDLHSNPLQSI Trigger: GATGCTCTGAAGAGGATTTGAGTGAAGATCAGAAAATTGTCTCCAACAGTCAGACATCAACAGAAGATCCTGGGGACTCCACTCCCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS-3UTR CAA 90 bp | TCACAAACTTCCTTCTTCCACTTCCTAAGTGCCAGGATTACAGGCATGTATCACCGGAAAGCTCATTGTTaGGTGTTTTCCCTCCGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: SQTSFFHFLSARITGMYHRKAHC*VFSLRE Trigger: TTCACGGAGGGAAAACACCAAACAATGAGCTTTCCG...GTGATACATGCCTGTAATCCTGGCACTTAGGAAGTGGAAGAAGGAAGTTTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS-3UTR CAA 90 bp | CTTTGTGCATGGCAGGTGGCAATGTTACCAGTGCTCTGTGTTCTGTCAGCCTTCCGGAAAGTAACTTTTTaGTTATTCTTGCAAGCGACA | + |
|
Preference number: 5 (lower is better) Translates to: LCAWQVAMLPVLCVLSAFRKVTF*LFLQAT Trigger: TGTCGCTTGCAAGAATAACAAAAAAGTTACTTTCCG...GAAGGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS TCA 90 bp | GTGAATGATATATTGATGCTTGTCAGAGTCTATGCTGCCTTTGTATaGGCAAGTAGCTGGATAACGAAGAGGTGGGAGGTAGCAGGAATC | + |
|
Preference number: 5 (lower is better) Translates to: VNDILMLVRVYAAFV*ASSWITKRWEVAGI Trigger: GATTCCTGCTACCTCCCACCTCTTCGTTATCCAGCTACTTGCTCATACAAAGGCAGCATAGACTCTGACAAGCATCAATATATCATTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS TCA 90 bp | ATCCCCATGAGAACAATAGATCATGGCGGGTTTATTGAGCTCCGTTaGATAGAACGGAACCCAGGTATTGATGTCAACATCACAAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: IPMRTIDHGGFIELR*IERNPGIDVNITSR Trigger: CCTACTTGTGATGTTGACATCAATACCTGGGTTCCGTTCTATTCAACGGAGCTCAATAAACCCGCCATGATCTATTGTTCTCATGGGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS TCA 90 bp | CATGTTCATTGCAATAATACTTGTTGCTTCCTTCTGACAAGTGGATaGGTGTGCGTTCTTCCAAATCCATGCACTGGGCATGTACCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: HVHCNNTCCFLLTSG*VCVLPNPCTGHVPS Trigger: ACTGGGTACATGCCCAGTGCATGGATTTGGAAGAACGCACACTCATCCACTTGTCAGAAGGAAGCAACAAGTATTATTGCAATGAACATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS TCA 90 bp | TACACTATTCCATTTTTCTGTGGTTCTCTGGGTAGAAGGCATGTATaGACGTCCTCCAAAGAGAACACCCATGCTTTTCCCTCGACTATA | + |
|
Preference number: 5 (lower is better) Translates to: YTIPFFCGSLGRRHV*TSSKENTHAFPSTI Trigger: TATAGTCGAGGGAAAAGCATGGGTGTTCTCTTTGGAGGACGTTCATACATGCCTTCTACCCAGAGAACCACAGAAAAATGGAATAGTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS-3UTR CAA 90 bp | ACAAACTTCCTTCTTCCACTTCCTAAGTGCCAGGATTACAGGCATGTATCACCATTCATCATTGTTTGTTaGAGTGAGGATTGCACTGGA | + |
|
Preference number: 5 (lower is better) Translates to: TNFLLPLPKCQDYRHVSPFIIVC*SEDCTG Trigger: TCCAGTGCAATCCTCACTCAAACAAACAATGATGAA...TGGTGATACATGCCTGTAATCCTGGCACTTAGGAAGTGGAAGAAGGAAGTTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS TCA 90 bp | AAATCTTATCGGAAAGCTCATTGTTTGGTGTTTTCCCTCCGTGAATaGTATATTGATGCTTGTCAGAGTCTATGCTGCCTTTGTATGAGC | + |
|
Preference number: 5 (lower is better) Translates to: KSYRKAHCLVFSLRE*YIDACQSLCCLCMS Trigger: GCTCATACAAAGGCAGCATAGACTCTGACAAGCATCAATATATCATTCACGGAGGGAAAACACCAAACAATGAGCTTTCCGATAAGATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 90 bp | GCAAGCGACAGACATGATATAAATCTTATCGGAAAGCTCATTGTTTaGTGTTTTCCCTCCGTGAATGATATATTGATGCTTGTCAGAGTC | + |
|
Preference number: 5 (lower is better) Translates to: ASDRHDINLIGKLIV*CFPSVNDILMLVRV Trigger: GACTCTGACAAGCATCAATATATCATTCACGGAGGGAAAACACCAAACAATGAGCTTTCCGATAAGATTTATATCATGTCTGTCGCTTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS-3UTR CAA 90 bp | ATTACAGGCATGTATCACCATCACCATGCCTGGCTTGATATAGAATTAAATTTTTTATCGGAAAGCTCATaGTTTGGTGTTTTCCCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: ITGMYHHHHAWLDIELNFLSESS*FGVFPP Trigger: CGGAGGGAAAACACCAAACAATGAGCTTTCCGATAA...AAAATTTAATTCTATATCAAGCCAGGCATGGTGATGGTGATACATGCCTGTAAT 39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044031.4 |
||
| CDS GCA 72 bp | GACAGAGATTCCTCCTGGCAAGACTGTGCAATTCACTaGTGGGGTACCCAGGGGAAGGTCCACTCTTATTCT | + |
|
Preference number: 6 (lower is better) Translates to: DRDSSWQDCAIH*WGTQGKVHSYS Trigger: AGAATAAGAGTGGACCTTCCCCTGGGTACCCCAGCAGTGAATTGCACAGTCTTGCCAGGAGGAATCTCTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 72 bp | TTGAGTGAGGATTGCACTGGAGACAGAGATTCCTCCTaGCAAGACTGTGCAATTCACTGCTGGGGTACCCAG | + |
|
Preference number: 6 (lower is better) Translates to: LSEDCTGDRDSS*QDCAIHCWGTQ Trigger: CTGGGTACCCCAGCAGTGAATTGCACAGTCTTGCCAGGAGGAATCTCTGTCTCCAGTGCAATCCTCACTCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 72 bp | CACCCATGCTTTTCCCTCGACTATACACCACGTCAATaGAATGGCCGTATCTGGGTTCAGGGACATCTCCTA | + |
|
Preference number: 6 (lower is better) Translates to: HPCFSLDYTPRQ*NGRIWVQGHLL Trigger: TAGGAGATGTCCCTGAACCCAGATACGGCCATTCCATTGACGTGGTGTATAGTCGAGGGAAAAGCATGGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 72 bp | AGAGATTCCTCCTGGCAAGACTGTGCAATTCACTGCTaGGGTACCCAGGGGAAGGTCCACTCTTATTCTATA | + |
|
Preference number: 6 (lower is better) Translates to: RDSSWQDCAIHC*GTQGKVHSYSI Trigger: TATAGAATAAGAGTGGACCTTCCCCTGGGTACCCCAGCAGTGAATTGCACAGTCTTGCCAGGAGGAATCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 72 bp | CTCGACTATACACCACGTCAATGGAATGGCCGTATCTaGGTTCAGGGACATCTCCTACTAAGTCTTTCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: LDYTPRQWNGRI*VQGHLLLSLSL Trigger: CAGAGAAAGACTTAGTAGGAGATGTCCCTGAACCCAGATACGGCCATTCCATTGACGTGGTGTATAGTCGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 72 bp | ATGCTTTTCCCTCGACTATACACCACGTCAATGGAATaGCCGTATCTGGGTTCAGGGACATCTCCTACTAAG | + |
|
Preference number: 6 (lower is better) Translates to: MLFPRLYTTSME*PYLGSGTSPTK Trigger: CTTAGTAGGAGATGTCCCTGAACCCAGATACGGCCATTCCATTGACGTGGTGTATAGTCGAGGGAAAAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS TCA 72 bp | CCATTTTTCTGTGGTTCTCTGGGTAGAAGGCATGTATaGACGTCCTCCAAAGAGAACACCCATGCTTTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: PFFCGSLGRRHV*TSSKENTHAFP Trigger: GGGAAAAGCATGGGTGTTCTCTTTGGAGGACGTTCATACATGCCTTCTACCCAGAGAACCACAGAAAAATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS GCA 72 bp | AAGGCATGTATGAACGTCCTCCAAAGAGAACACCCATaGTTTTCCCTCGACTATACACCACGTCAATGGAAT | + |
|
Preference number: 6 (lower is better) Translates to: KACMNVLQREHP*FSLDYTPRQWN Trigger: ATTCCATTGACGTGGTGTATAGTCGAGGGAAAAGCATGGGTGTTCTCTTTGGAGGACGTTCATACATGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS TCA 72 bp | ATATTGATGCTTGTCAGAGTCTATGCTGCCTTTGTATaGGCAAGTAGCTGGATAACGAAGAGGTGGGAGGTA | + |
|
Preference number: 6 (lower is better) Translates to: ILMLVRVYAAFV*ASSWITKRWEV Trigger: TACCTCCCACCTCTTCGTTATCCAGCTACTTGCTCATACAAAGGCAGCATAGACTCTGACAAGCATCAATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CCA 72 bp | CAGTCAGCTACACTATTCCATTTTTCTGTGGTTCTCTaGGTAGAAGGCATGTATGAACGTCCTCCAAAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: QSATLFHFSVVL*VEGMYERPPKR Trigger: TCTCTTTGGAGGACGTTCATACATGCCTTCTACCCAGAGAACCACAGAAAAATGGAATAGTGTAGCTGACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
||
| CDS CAA 72 bp | AGTCTTCAAAGGGAGTGGAGTCCCCAGGATCTTCTGTaGATGTCTGACTGTTGGAGACAATTTTCTGATCTT | + |
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Preference number: 6 (lower is better) Translates to: SLQREWSPQDLL*MSDCWRQFSDL Trigger: AAGATCAGAAAATTGTCTCCAACAGTCAGACATCAACAGAAGATCCTGGGGACTCCACTCCCTTTGAAGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
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| CDS CAA 90 bp | ATTCCTCTGAGTCTTCAAAGGGAGTGGAGTCCCCAGGATCTTCTGTaGATGTCTGACTGTTGGAGACAATTTTCTGATCTTCACTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: IPLSLQREWSPQDLL*MSDCWRQFSDLHSN Trigger: ATTTGAGTGAAGATCAGAAAATTGTCTCCAACAGTCAGACATCAACAGAAGATCCTGGGGACTCCACTCCCTTTGAAGACTCAGAGGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
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| CDS TCA 72 bp | CGGAAAGCTCATTGTTTGGTGTTTTCCCTCCGTGAATaGTATATTGATGCTTGTCAGAGTCTATGCTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: RKAHCLVFSLRE*YIDACQSLCCL Trigger: AAGGCAGCATAGACTCTGACAAGCATCAATATATCATTCACGGAGGGAAAACACCAAACAATGAGCTTTCCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
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| CDS TCA 72 bp | AGAACAATAGATCATGGCGGGTTTATTGAGCTCCGTTaGATAGAACGGAACCCAGGTATTGATGTCAACATC | + |
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Preference number: 6 (lower is better) Translates to: RTIDHGGFIELR*IERNPGIDVNI Trigger: GATGTTGACATCAATACCTGGGTTCCGTTCTATTCAACGGAGCTCAATAAACCCGCCATGATCTATTGTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
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| CDS CAA 90 bp | TTATTGTCTCCTGGTATGCCAAGGAAAATAGTCCCGTTTCCCATGTaGCTTCCAAACCATATTTTGCTATGCTTAATATCTGAGGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: LLSPGMPRKIVPFPM*LPNHILLCLISEVQ Trigger: CTGGACCTCAGATATTAAGCATAGCAAAATATGGTTTGGAAGCAACATGGGAAACGGGACTATTTTCCTTGGCATACCAGGAGACAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
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| CDS CAA 72 bp | ATAACCACCCACAATAACAAATTCATCATTGTTTGTTaGAGTGAGGATTGCACTGGAGACAGAGATTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: ITTHNNKFIIVC*SEDCTGDRDSS Trigger: GGAGGAATCTCTGTCTCCAGTGCAATCCTCACTCAAACAAACAATGATGAATTTGTTATTGTGGGTGGTTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
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| CDS TCA 72 bp | TACATGTTCATTGCAATAATACTTGTTGCTTCCTTCTaGCAAGTGGATGAGTGTGCGTTCTTCCAAATCCAT | + |
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Preference number: 6 (lower is better) Translates to: YMFIAIILVASF*QVDECAFFQIH Trigger: ATGGATTTGGAAGAACGCACACTCATCCACTTGTCAGAAGGAAGCAACAAGTATTATTGCAATGAACATGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044031.4 ENSMUST00000111227.2 |
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