RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAET1E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053219

Ensembl transcript IDs: ENSMUST00000065527.11, ENSMUST00000178026.2, ENSMUST00000180648.8, ENSMUST00000181645.8

Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCCTTACTGTGGGACTTaGCCTGGGTTTAATAATATT +
Preference number: 2 (lower is better)
Translates to: GRPQSYIATNDVITGHDSPYCGT*PGFNNI
Trigger: AATATTATTAAACCCAGGGCAAGTCCCACAGTAAGG...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
3UTR-3UTR GCA 90 bp CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATCCTTACTGTGGGACTTaGCCTGGGTTTAATAATATT +
Preference number: 2 (lower is better)
Translates to: RPQSYIATNDVITGHDSHPYCGT*PGFNNI
Trigger: AATATTATTAAACCCAGGGCAAGTCCCACAGTAAGG...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR GCA 90 bp GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTTTGCCAGTGGCATTTaGCATCTTCCCTGGGTCACC +
Preference number: 4 (lower is better)
Translates to: GRPQSYIATNDVITGHDSFASGI*HLPWVT
Trigger: GGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR GCA 90 bp CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTGCCAGTGGCATTTaGCATCTTCCCTGGGTCACC +
Preference number: 4 (lower is better)
Translates to: RPQSYIATNDVITGHDSHFASGI*HLPWVT
Trigger: GGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAA...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CCA 90 bp CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTCTTAGAAGTAGAGTaGCTGGGAGGTGGAAGCGGG +
Preference number: 4 (lower is better)
Translates to: RPQSYIATNDVITGHDSHFLEVE*LGGGSG
Trigger: CCCGCTTCCACCTCCCAGCCACTCTACTTCTAAGAA...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR TCA 90 bp TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTACCAGGGAAGGTCTGCTaGGGTAGGATCCTTGATGGT +
Preference number: 4 (lower is better)
Translates to: SETINFIVNLTVGLALGLPGKVC*GRILDG
Trigger: ACCATCAAGGATCCTACCTCAGCAGACCTTCCCTGG...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CCA 90 bp GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTTGTCCCTCAACTCCTaGCACAAATCGTTCAGAGGT +
Preference number: 4 (lower is better)
Translates to: GRPQSYIATNDVITGHDSLSLNS*HKSFRG
Trigger: ACCTCTGAACGATTTGTGCCAGGAGTTGAGGGACAA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR TCA 90 bp CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAACCAGGGAAGGTCTGCTaGGGTAGGATCCTTGATGGT +
Preference number: 4 (lower is better)
Translates to: QSYIATNDVITGHDSHFKPGKVC*GRILDG
Trigger: ACCATCAAGGATCCTACCTCAGCAGACCTTCCCTGG...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR GCA 90 bp GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTGTTGTGTCAAACATTTaGCAGTGGCATTTGCCATCT +
Preference number: 4 (lower is better)
Translates to: GRPQSYIATNDVITGHDSVVSNI*QWHLPS
Trigger: AGATGGCAAATGCCACTGGCAAATGTTTGACACAAC...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CCA 90 bp GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATATTCTTAGAAGTAGAGTaGCTGGGAGGTGGAAGCGGG +
Preference number: 4 (lower is better)
Translates to: ETINFIVNLTVGLALGLIFLEVE*LGGGSG
Trigger: CCCGCTTCCACCTCCCAGCCACTCTACTTCTAAGAA...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR GCA 90 bp TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAGTTGTGTCAAACATTTaGCAGTGGCATTTGCCATCT +
Preference number: 4 (lower is better)
Translates to: SETINFIVNLTVGLALGLVVSNI*QWHLPS
Trigger: AGATGGCAAATGCCACTGGCAAATGTTTGACACAAC...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CCA 90 bp GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATATCAAACATTTGCCAGTaGCATTTGCCATCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: ETINFIVNLTVGLALGLISNICQ*HLPSSL
Trigger: CAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGA...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CCA 90 bp CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAATCAAACATTTGCCAGTaGCATTTGCCATCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: QSYIATNDVITGHDSHFKSNICQ*HLPSSL
Trigger: CAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGA...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CCA 90 bp TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAGGTCACCTGAAGTCATaGTCTTGTTTATGTTATTTA +
Preference number: 4 (lower is better)
Translates to: SETINFIVNLTVGLALGLGHLKS*SCLCYL
Trigger: TAAATAACATAAACAAGACCATGACTTCAGGTGACC...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CCA 90 bp TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATCTTGGCTTTTCCTTaGACTGCTTTAAGAATTCAT +
Preference number: 4 (lower is better)
Translates to: SETINFIVNLTVGLALGLILAFP*TALRIH
Trigger: ATGAATTCTTAAAGCAGTCCAAGGAAAAGCCAAGAT...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR GCA 90 bp GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATAGGCTTTTCCTTGGACTaGTTTAAGAATTCATCAATT +
Preference number: 4 (lower is better)
Translates to: ETINFIVNLTVGLALGLIGFSLD*FKNSSI
Trigger: AATTGATGAATTCTTAAAGCAGTCCAAGGAAAAGCC...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CCA 90 bp GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATAATCTTGGCTTTTCCTTaGACTGCTTTAAGAATTCAT +
Preference number: 4 (lower is better)
Translates to: ETINFIVNLTVGLALGLIILAFP*TALRIH
Trigger: ATGAATTCTTAAAGCAGTCCAAGGAAAAGCCAAGAT...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CCA 90 bp CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAAGGTCACCTGAAGTCATaGTCTTGTTTATGTTATTTA +
Preference number: 4 (lower is better)
Translates to: QSYIATNDVITGHDSHFKGHLKS*SCLCYL
Trigger: TAAATAACATAAACAAGACCATGACTTCAGGTGACC...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS GCA 90 bp CCCTCAACTCCTGGCACAAATCGTTCAGAGGTTGTGTCAAACATTTaGCAGTGGCATTTGCCATCTTCCCTGGGTCACCTGAAGTCATGG +
Preference number: 5 (lower is better)
Translates to: PSTPGTNRSEVVSNI*QWHLPSSLGHLKSW
Trigger: CCATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGTTGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CCA 90 bp ACTCCTGGCACAAATCGTTCAGAGGTTGTGTCAAACATTTGCCAGTaGCATTTGCCATCTTCCCTGGGTCACCTGAAGTCATGGTCTTGT +
Preference number: 5 (lower is better)
Translates to: TPGTNRSEVVSNICQ*HLPSSLGHLKSWSC
Trigger: ACAAGACCATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATATTTGCCAGTGGCATTaGCCATCTTCCCTGGGTCAC +
Preference number: 5 (lower is better)
Translates to: RPQSYIATNDVITGHDSHICQWH*PSSLGH
Trigger: GTGACCCAGGGAAGATGGCAAATGCCACTGGCAAAT...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTCCTTGATGGTCAAGTaGCACCTAAGAGAGTGTGCA +
Preference number: 5 (lower is better)
Translates to: GRPQSYIATNDVITGHDSSLMVK*HLRECA
Trigger: TGCACACTCTCTTAGGTGCAACTTGACCATCAAGGA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATTTGCCAGTGGCATTaGCCATCTTCCCTGGGTCAC +
Preference number: 5 (lower is better)
Translates to: SETINFIVNLTVGLALGLICQWH*PSSLGH
Trigger: GTGACCCAGGGAAGATGGCAAATGCCACTGGCAAAT...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATGGTTGTGTCAAACATTaGCCAGTGGCATTTGCCATC +
Preference number: 5 (lower is better)
Translates to: RPQSYIATNDVITGHDSHGCVKH*PVAFAI
Trigger: GATGGCAAATGCCACTGGCAAATGTTTGACACAACC...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTATGGGGGACCTTGAGGTaGATCTTGGCTTTTCCTTGG +
Preference number: 5 (lower is better)
Translates to: SETINFIVNLTVGLALGLWGTLR*ILAFPW
Trigger: CCAAGGAAAAGCCAAGATCAACCTCAAGGTCCCCCA...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTGAAGTATTTCAATTGTaGCACAAGGTCCCCATCATC +
Preference number: 5 (lower is better)
Translates to: GRPQSYIATNDVITGHDSEVFQL*HKVPII
Trigger: GATGATGGGGACCTTGTGCAACAATTGAAATACTTC...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATATGGGGGACCTTGAGGTaGATCTTGGCTTTTCCTTGG +
Preference number: 5 (lower is better)
Translates to: ETINFIVNLTVGLALGLIWGTLR*ILAFPW
Trigger: CCAAGGAAAAGCCAAGATCAACCTCAAGGTCCCCCA...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATCAAATCGTTCAGAGGTaGTGTCAAACATTTGCCAGT +
Preference number: 5 (lower is better)
Translates to: RPQSYIATNDVITGHDSHQIVQR*CQTFAS
Trigger: ACTGGCAAATGTTTGACACAACCTCTGAACGATTTG...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTATGAAGTATTTCAATaGTTGCACAAGGTCCCCATC +
Preference number: 5 (lower is better)
Translates to: GRPQSYIATNDVITGHDSYEVFQ*LHKVPI
Trigger: GATGGGGACCTTGTGCAACAATTGAAATACTTCATA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTGATCTTGGCTTTTCCTaGGACTGCTTTAAGAATTCA +
Preference number: 5 (lower is better)
Translates to: GRPQSYIATNDVITGHDSDLGFS*DCFKNS
Trigger: TGAATTCTTAAAGCAGTCCAAGGAAAAGCCAAGATC...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAACCTTGAGGTTGATCTaGGCTTTTCCTTGGACTGCT +
Preference number: 5 (lower is better)
Translates to: SETINFIVNLTVGLALGLTLRLI*AFPWTA
Trigger: AGCAGTCCAAGGAAAAGCCAAGATCAACCTCAAGGT...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTATGAAGTATTTCAATaGTTGCACAAGGTCCCCATC +
Preference number: 5 (lower is better)
Translates to: RPQSYIATNDVITGHDSHYEVFQ*LHKVPI
Trigger: GATGGGGACCTTGTGCAACAATTGAAATACTTCATA...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAATCCTTGATGGTCAAGTaGCACCTAAGAGAGTGTGCA +
Preference number: 5 (lower is better)
Translates to: QSYIATNDVITGHDSHFKSLMVK*HLRECA
Trigger: TGCACACTCTCTTAGGTGCAACTTGACCATCAAGGA...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAGAAGTATTTCAATTGTaGCACAAGGTCCCCATCATC +
Preference number: 5 (lower is better)
Translates to: SETINFIVNLTVGLALGLEVFQL*HKVPII
Trigger: GATGATGGGGACCTTGTGCAACAATTGAAATACTTC...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAAACCTTGAGGTTGATCTaGGCTTTTCCTTGGACTGCT +
Preference number: 5 (lower is better)
Translates to: QSYIATNDVITGHDSHFKTLRLI*AFPWTA
Trigger: AGCAGTCCAAGGAAAAGCCAAGATCAACCTCAAGGT...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATACAAATCGTTCAGAGGTaGTGTCAAACATTTGCCAGT +
Preference number: 5 (lower is better)
Translates to: ETINFIVNLTVGLALGLIQIVQR*CQTFAS
Trigger: ACTGGCAAATGTTTGACACAACCTCTGAACGATTTG...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS-3UTR CAA 90 bp CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAAGATCTTGGCTTTTCCTaGGACTGCTTTAAGAATTCA +
Preference number: 5 (lower is better)
Translates to: QSYIATNDVITGHDSHFKDLGFS*DCFKNS
Trigger: TGAATTCTTAAAGCAGTCCAAGGAAAAGCCAAGATC...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065527.11
ENSMUST00000181645.8
CDS CCA 72 bp TGGCTGGGAGGTGGAAGCGGGGAAGTTGATGTAAGCTaGGTGATACTGGGGGACCTTGAGGTTGATCTTGGC +
Preference number: 6 (lower is better)
Translates to: WLGGGSGEVDVS*VILGDLEVDLG
Trigger: GCCAAGATCAACCTCAAGGTCCCCCAGTATCACCCAGCTTACATCAACTTCCCCGCTTCCACCTCCCAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CAA 90 bp GAGCACTTCACGTCACACCAGGGAAGGTCTGCTGAGGTAGGATCCTaGATGGTCAAGTTGCACCTAAGAGAGTGTGCATCATCCAGCCCG +
Preference number: 6 (lower is better)
Translates to: EHFTSHQGRSAEVGS*MVKLHLRECASSSP
Trigger: CGGGCTGGATGATGCACACTCTCTTAGGTGCAACTTGACCATCAAGGATCCTACCTCAGCAGACCTTCCCTGGTGTGACGTGAAGTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000180648.8
ENSMUST00000181645.8
CDS CAA 72 bp GGAAGGTCTGCTGAGGTAGGATCCTTGATGGTCAAGTaGCACCTAAGAGAGTGTGCATCATCCAGCCCGTTG +
Preference number: 6 (lower is better)
Translates to: GRSAEVGSLMVK*HLRECASSSPL
Trigger: CAACGGGCTGGATGATGCACACTCTCTTAGGTGCAACTTGACCATCAAGGATCCTACCTCAGCAGACCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000180648.8
ENSMUST00000181645.8
CDS GCA 72 bp CCTGGCACAAATCGTTCAGAGGTTGTGTCAAACATTTaGCAGTGGCATTTGCCATCTTCCCTGGGTCACCTG +
Preference number: 6 (lower is better)
Translates to: PGTNRSEVVSNI*QWHLPSSLGHL
Trigger: CAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CAA 90 bp TCCCTCAACTCCTGGCACAAATCGTTCAGAGGTTGTGTCAAACATTaGCCAGTGGCATTTGCCATCTTCCCTGGGTCACCTGAAGTCATG +
Preference number: 6 (lower is better)
Translates to: SLNSWHKSFRGCVKH*PVAFAIFPGSPEVM
Trigger: CATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGTTGAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CAA 90 bp GTTAGACACCTTGTCCCTCAACTCCTGGCACAAATCGTTCAGAGGTaGTGTCAAACATTTGCCAGTGGCATTTGCCATCTTCCCTGGGTC +
Preference number: 6 (lower is better)
Translates to: VRHLVPQLLAQIVQR*CQTFASGICHLPWV
Trigger: GACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGTTGAGGGACAAGGTGTCTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CAA 72 bp CGTTCAGAGGTTGTGTCAAACATTTGCCAGTGGCATTaGCCATCTTCCCTGGGTCACCTGAAGTCATGGTCT +
Preference number: 6 (lower is better)
Translates to: RSEVVSNICQWH*PSSLGHLKSWS
Trigger: AGACCATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CCA 72 bp AGTCCCACAGAGATAAATCCTTTCTTAGAAGTAGAGTaGCTGGGAGGTGGAAGCGGGGAAGTTGATGTAAGC +
Preference number: 6 (lower is better)
Translates to: SPTEINPFLEVE*LGGGSGEVDVS
Trigger: GCTTACATCAACTTCCCCGCTTCCACCTCCCAGCCACTCTACTTCTAAGAAAGGATTTATCTCTGTGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CAA 90 bp GGCACAAATCGTTCAGAGGTTGTGTCAAACATTTGCCAGTGGCATTaGCCATCTTCCCTGGGTCACCTGAAGTCATGGTCTTGTTTATGT +
Preference number: 6 (lower is better)
Translates to: GTNRSEVVSNICQWH*PSSLGHLKSWSCLC
Trigger: ACATAAACAAGACCATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CCA 72 bp ACAAATCGTTCAGAGGTTGTGTCAAACATTTGCCAGTaGCATTTGCCATCTTCCCTGGGTCACCTGAAGTCA +
Preference number: 6 (lower is better)
Translates to: TNRSEVVSNICQ*HLPSSLGHLKS
Trigger: TGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CAA 72 bp CTTGTCCCTCAACTCCTGGCACAAATCGTTCAGAGGTaGTGTCAAACATTTGCCAGTGGCATTTGCCATCTT +
Preference number: 6 (lower is better)
Translates to: LVPQLLAQIVQR*CQTFASGICHL
Trigger: AAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGTTGAGGGACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS GCA 72 bp TTCTGTCTGCATTGGGGTATGAAGTATTTCAATTGTTaGACAAGGTCCCCATCATCTTTCCATTTATTCATG +
Preference number: 6 (lower is better)
Translates to: FCLHWGMKYFNC*TRSPSSFHLFM
Trigger: CATGAATAAATGGAAAGATGATGGGGACCTTGTGCAACAATTGAAATACTTCATACCCCAATGCAGACAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8
CDS CCA 72 bp GACTGCTTTAAGAATTCATCAATTTTCTGTCTGCATTaGGGTATGAAGTATTTCAATTGTTGCACAAGGTCC +
Preference number: 6 (lower is better)
Translates to: DCFKNSSIFCLH*GMKYFNCCTRS
Trigger: GGACCTTGTGCAACAATTGAAATACTTCATACCCCAATGCAGACAGAAAATTGATGAATTCTTAAAGCAGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065527.11
ENSMUST00000178026.2
ENSMUST00000181645.8