Pregenerated sensors for RAET1E (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053219Ensembl transcript IDs: ENSMUST00000065527.11, ENSMUST00000178026.2, ENSMUST00000180648.8, ENSMUST00000181645.8
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCCTTACTGTGGGACTTaGCCTGGGTTTAATAATATT | + |
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Preference number: 2 (lower is better) Translates to: GRPQSYIATNDVITGHDSPYCGT*PGFNNI Trigger: AATATTATTAAACCCAGGGCAAGTCCCACAGTAAGG...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| 3UTR-3UTR GCA 90 bp | CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATCCTTACTGTGGGACTTaGCCTGGGTTTAATAATATT | + |
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Preference number: 2 (lower is better) Translates to: RPQSYIATNDVITGHDSHPYCGT*PGFNNI Trigger: AATATTATTAAACCCAGGGCAAGTCCCACAGTAAGG...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR GCA 90 bp | GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTTTGCCAGTGGCATTTaGCATCTTCCCTGGGTCACC | + |
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Preference number: 4 (lower is better) Translates to: GRPQSYIATNDVITGHDSFASGI*HLPWVT Trigger: GGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR GCA 90 bp | CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTGCCAGTGGCATTTaGCATCTTCCCTGGGTCACC | + |
|
Preference number: 4 (lower is better) Translates to: RPQSYIATNDVITGHDSHFASGI*HLPWVT Trigger: GGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAA...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CCA 90 bp | CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTCTTAGAAGTAGAGTaGCTGGGAGGTGGAAGCGGG | + |
|
Preference number: 4 (lower is better) Translates to: RPQSYIATNDVITGHDSHFLEVE*LGGGSG Trigger: CCCGCTTCCACCTCCCAGCCACTCTACTTCTAAGAA...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR TCA 90 bp | TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTACCAGGGAAGGTCTGCTaGGGTAGGATCCTTGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: SETINFIVNLTVGLALGLPGKVC*GRILDG Trigger: ACCATCAAGGATCCTACCTCAGCAGACCTTCCCTGG...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CCA 90 bp | GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTTGTCCCTCAACTCCTaGCACAAATCGTTCAGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: GRPQSYIATNDVITGHDSLSLNS*HKSFRG Trigger: ACCTCTGAACGATTTGTGCCAGGAGTTGAGGGACAA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR TCA 90 bp | CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAACCAGGGAAGGTCTGCTaGGGTAGGATCCTTGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: QSYIATNDVITGHDSHFKPGKVC*GRILDG Trigger: ACCATCAAGGATCCTACCTCAGCAGACCTTCCCTGG...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR GCA 90 bp | GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTGTTGTGTCAAACATTTaGCAGTGGCATTTGCCATCT | + |
|
Preference number: 4 (lower is better) Translates to: GRPQSYIATNDVITGHDSVVSNI*QWHLPS Trigger: AGATGGCAAATGCCACTGGCAAATGTTTGACACAAC...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CCA 90 bp | GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATATTCTTAGAAGTAGAGTaGCTGGGAGGTGGAAGCGGG | + |
|
Preference number: 4 (lower is better) Translates to: ETINFIVNLTVGLALGLIFLEVE*LGGGSG Trigger: CCCGCTTCCACCTCCCAGCCACTCTACTTCTAAGAA...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR GCA 90 bp | TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAGTTGTGTCAAACATTTaGCAGTGGCATTTGCCATCT | + |
|
Preference number: 4 (lower is better) Translates to: SETINFIVNLTVGLALGLVVSNI*QWHLPS Trigger: AGATGGCAAATGCCACTGGCAAATGTTTGACACAAC...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CCA 90 bp | GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATATCAAACATTTGCCAGTaGCATTTGCCATCTTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: ETINFIVNLTVGLALGLISNICQ*HLPSSL Trigger: CAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGA...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CCA 90 bp | CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAATCAAACATTTGCCAGTaGCATTTGCCATCTTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: QSYIATNDVITGHDSHFKSNICQ*HLPSSL Trigger: CAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGA...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CCA 90 bp | TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAGGTCACCTGAAGTCATaGTCTTGTTTATGTTATTTA | + |
|
Preference number: 4 (lower is better) Translates to: SETINFIVNLTVGLALGLGHLKS*SCLCYL Trigger: TAAATAACATAAACAAGACCATGACTTCAGGTGACC...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CCA 90 bp | TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATCTTGGCTTTTCCTTaGACTGCTTTAAGAATTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SETINFIVNLTVGLALGLILAFP*TALRIH Trigger: ATGAATTCTTAAAGCAGTCCAAGGAAAAGCCAAGAT...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR GCA 90 bp | GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATAGGCTTTTCCTTGGACTaGTTTAAGAATTCATCAATT | + |
|
Preference number: 4 (lower is better) Translates to: ETINFIVNLTVGLALGLIGFSLD*FKNSSI Trigger: AATTGATGAATTCTTAAAGCAGTCCAAGGAAAAGCC...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CCA 90 bp | GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATAATCTTGGCTTTTCCTTaGACTGCTTTAAGAATTCAT | + |
|
Preference number: 4 (lower is better) Translates to: ETINFIVNLTVGLALGLIILAFP*TALRIH Trigger: ATGAATTCTTAAAGCAGTCCAAGGAAAAGCCAAGAT...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CCA 90 bp | CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAAGGTCACCTGAAGTCATaGTCTTGTTTATGTTATTTA | + |
|
Preference number: 4 (lower is better) Translates to: QSYIATNDVITGHDSHFKGHLKS*SCLCYL Trigger: TAAATAACATAAACAAGACCATGACTTCAGGTGACC...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS GCA 90 bp | CCCTCAACTCCTGGCACAAATCGTTCAGAGGTTGTGTCAAACATTTaGCAGTGGCATTTGCCATCTTCCCTGGGTCACCTGAAGTCATGG | + |
|
Preference number: 5 (lower is better) Translates to: PSTPGTNRSEVVSNI*QWHLPSSLGHLKSW Trigger: CCATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGTTGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CCA 90 bp | ACTCCTGGCACAAATCGTTCAGAGGTTGTGTCAAACATTTGCCAGTaGCATTTGCCATCTTCCCTGGGTCACCTGAAGTCATGGTCTTGT | + |
|
Preference number: 5 (lower is better) Translates to: TPGTNRSEVVSNICQ*HLPSSLGHLKSWSC Trigger: ACAAGACCATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATATTTGCCAGTGGCATTaGCCATCTTCCCTGGGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: RPQSYIATNDVITGHDSHICQWH*PSSLGH Trigger: GTGACCCAGGGAAGATGGCAAATGCCACTGGCAAAT...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTCCTTGATGGTCAAGTaGCACCTAAGAGAGTGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: GRPQSYIATNDVITGHDSSLMVK*HLRECA Trigger: TGCACACTCTCTTAGGTGCAACTTGACCATCAAGGA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATTTGCCAGTGGCATTaGCCATCTTCCCTGGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: SETINFIVNLTVGLALGLICQWH*PSSLGH Trigger: GTGACCCAGGGAAGATGGCAAATGCCACTGGCAAAT...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATGGTTGTGTCAAACATTaGCCAGTGGCATTTGCCATC | + |
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Preference number: 5 (lower is better) Translates to: RPQSYIATNDVITGHDSHGCVKH*PVAFAI Trigger: GATGGCAAATGCCACTGGCAAATGTTTGACACAACC...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTATGGGGGACCTTGAGGTaGATCTTGGCTTTTCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: SETINFIVNLTVGLALGLWGTLR*ILAFPW Trigger: CCAAGGAAAAGCCAAGATCAACCTCAAGGTCCCCCA...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTGAAGTATTTCAATTGTaGCACAAGGTCCCCATCATC | + |
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Preference number: 5 (lower is better) Translates to: GRPQSYIATNDVITGHDSEVFQL*HKVPII Trigger: GATGATGGGGACCTTGTGCAACAATTGAAATACTTC...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATATGGGGGACCTTGAGGTaGATCTTGGCTTTTCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: ETINFIVNLTVGLALGLIWGTLR*ILAFPW Trigger: CCAAGGAAAAGCCAAGATCAACCTCAAGGTCCCCCA...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATCAAATCGTTCAGAGGTaGTGTCAAACATTTGCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: RPQSYIATNDVITGHDSHQIVQR*CQTFAS Trigger: ACTGGCAAATGTTTGACACAACCTCTGAACGATTTG...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTATGAAGTATTTCAATaGTTGCACAAGGTCCCCATC | + |
|
Preference number: 5 (lower is better) Translates to: GRPQSYIATNDVITGHDSYEVFQ*LHKVPI Trigger: GATGGGGACCTTGTGCAACAATTGAAATACTTCATA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | GGACGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTGATCTTGGCTTTTCCTaGGACTGCTTTAAGAATTCA | + |
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Preference number: 5 (lower is better) Translates to: GRPQSYIATNDVITGHDSDLGFS*DCFKNS Trigger: TGAATTCTTAAAGCAGTCCAAGGAAAAGCCAAGATC...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAACCTTGAGGTTGATCTaGGCTTTTCCTTGGACTGCT | + |
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Preference number: 5 (lower is better) Translates to: SETINFIVNLTVGLALGLTLRLI*AFPWTA Trigger: AGCAGTCCAAGGAAAAGCCAAGATCAACCTCAAGGT...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | CGTCCTCAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTATGAAGTATTTCAATaGTTGCACAAGGTCCCCATC | + |
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Preference number: 5 (lower is better) Translates to: RPQSYIATNDVITGHDSHYEVFQ*LHKVPI Trigger: GATGGGGACCTTGTGCAACAATTGAAATACTTCATA...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTGAGGACG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAATCCTTGATGGTCAAGTaGCACCTAAGAGAGTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: QSYIATNDVITGHDSHFKSLMVK*HLRECA Trigger: TGCACACTCTCTTAGGTGCAACTTGACCATCAAGGA...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | TCTGAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAGAAGTATTTCAATTGTaGCACAAGGTCCCCATCATC | + |
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Preference number: 5 (lower is better) Translates to: SETINFIVNLTVGLALGLEVFQL*HKVPII Trigger: GATGATGGGGACCTTGTGCAACAATTGAAATACTTC...TAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAAACCTTGAGGTTGATCTaGGCTTTTCCTTGGACTGCT | + |
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Preference number: 5 (lower is better) Translates to: QSYIATNDVITGHDSHFKTLRLI*AFPWTA Trigger: AGCAGTCCAAGGAAAAGCCAAGATCAACCTCAAGGT...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | GAAACAATAAACTTTATTGTGAACCTTACTGTGGGACTTGCCCTGGGTTTAATACAAATCGTTCAGAGGTaGTGTCAAACATTTGCCAGT | + |
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Preference number: 5 (lower is better) Translates to: ETINFIVNLTVGLALGLIQIVQR*CQTFAS Trigger: ACTGGCAAATGTTTGACACAACCTCTGAACGATTTG...TATTAAACCCAGGGCAAGTCCCACAGTAAGGTTCACAATAAAGTTTATTGTTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS-3UTR CAA 90 bp | CAATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAAGATCTTGGCTTTTCCTaGGACTGCTTTAAGAATTCA | + |
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Preference number: 5 (lower is better) Translates to: QSYIATNDVITGHDSHFKDLGFS*DCFKNS Trigger: TGAATTCTTAAAGCAGTCCAAGGAAAAGCCAAGATC...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065527.11 ENSMUST00000181645.8 |
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| CDS CCA 72 bp | TGGCTGGGAGGTGGAAGCGGGGAAGTTGATGTAAGCTaGGTGATACTGGGGGACCTTGAGGTTGATCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: WLGGGSGEVDVS*VILGDLEVDLG Trigger: GCCAAGATCAACCTCAAGGTCCCCCAGTATCACCCAGCTTACATCAACTTCCCCGCTTCCACCTCCCAGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CAA 90 bp | GAGCACTTCACGTCACACCAGGGAAGGTCTGCTGAGGTAGGATCCTaGATGGTCAAGTTGCACCTAAGAGAGTGTGCATCATCCAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: EHFTSHQGRSAEVGS*MVKLHLRECASSSP Trigger: CGGGCTGGATGATGCACACTCTCTTAGGTGCAACTTGACCATCAAGGATCCTACCTCAGCAGACCTTCCCTGGTGTGACGTGAAGTGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000180648.8 ENSMUST00000181645.8 |
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| CDS CAA 72 bp | GGAAGGTCTGCTGAGGTAGGATCCTTGATGGTCAAGTaGCACCTAAGAGAGTGTGCATCATCCAGCCCGTTG | + |
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Preference number: 6 (lower is better) Translates to: GRSAEVGSLMVK*HLRECASSSPL Trigger: CAACGGGCTGGATGATGCACACTCTCTTAGGTGCAACTTGACCATCAAGGATCCTACCTCAGCAGACCTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000180648.8 ENSMUST00000181645.8 |
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| CDS GCA 72 bp | CCTGGCACAAATCGTTCAGAGGTTGTGTCAAACATTTaGCAGTGGCATTTGCCATCTTCCCTGGGTCACCTG | + |
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Preference number: 6 (lower is better) Translates to: PGTNRSEVVSNI*QWHLPSSLGHL Trigger: CAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CAA 90 bp | TCCCTCAACTCCTGGCACAAATCGTTCAGAGGTTGTGTCAAACATTaGCCAGTGGCATTTGCCATCTTCCCTGGGTCACCTGAAGTCATG | + |
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Preference number: 6 (lower is better) Translates to: SLNSWHKSFRGCVKH*PVAFAIFPGSPEVM Trigger: CATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGTTGAGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CAA 90 bp | GTTAGACACCTTGTCCCTCAACTCCTGGCACAAATCGTTCAGAGGTaGTGTCAAACATTTGCCAGTGGCATTTGCCATCTTCCCTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: VRHLVPQLLAQIVQR*CQTFASGICHLPWV Trigger: GACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGTTGAGGGACAAGGTGTCTAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CAA 72 bp | CGTTCAGAGGTTGTGTCAAACATTTGCCAGTGGCATTaGCCATCTTCCCTGGGTCACCTGAAGTCATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: RSEVVSNICQWH*PSSLGHLKSWS Trigger: AGACCATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CCA 72 bp | AGTCCCACAGAGATAAATCCTTTCTTAGAAGTAGAGTaGCTGGGAGGTGGAAGCGGGGAAGTTGATGTAAGC | + |
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Preference number: 6 (lower is better) Translates to: SPTEINPFLEVE*LGGGSGEVDVS Trigger: GCTTACATCAACTTCCCCGCTTCCACCTCCCAGCCACTCTACTTCTAAGAAAGGATTTATCTCTGTGGGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CAA 90 bp | GGCACAAATCGTTCAGAGGTTGTGTCAAACATTTGCCAGTGGCATTaGCCATCTTCCCTGGGTCACCTGAAGTCATGGTCTTGTTTATGT | + |
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Preference number: 6 (lower is better) Translates to: GTNRSEVVSNICQWH*PSSLGHLKSWSCLC Trigger: ACATAAACAAGACCATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CCA 72 bp | ACAAATCGTTCAGAGGTTGTGTCAAACATTTGCCAGTaGCATTTGCCATCTTCCCTGGGTCACCTGAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: TNRSEVVSNICQ*HLPSSLGHLKS Trigger: TGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CAA 72 bp | CTTGTCCCTCAACTCCTGGCACAAATCGTTCAGAGGTaGTGTCAAACATTTGCCAGTGGCATTTGCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: LVPQLLAQIVQR*CQTFASGICHL Trigger: AAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGAACGATTTGTGCCAGGAGTTGAGGGACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS GCA 72 bp | TTCTGTCTGCATTGGGGTATGAAGTATTTCAATTGTTaGACAAGGTCCCCATCATCTTTCCATTTATTCATG | + |
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Preference number: 6 (lower is better) Translates to: FCLHWGMKYFNC*TRSPSSFHLFM Trigger: CATGAATAAATGGAAAGATGATGGGGACCTTGTGCAACAATTGAAATACTTCATACCCCAATGCAGACAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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| CDS CCA 72 bp | GACTGCTTTAAGAATTCATCAATTTTCTGTCTGCATTaGGGTATGAAGTATTTCAATTGTTGCACAAGGTCC | + |
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Preference number: 6 (lower is better) Translates to: DCFKNSSIFCLH*GMKYFNCCTRS Trigger: GGACCTTGTGCAACAATTGAAATACTTCATACCCCAATGCAGACAGAAAATTGATGAATTCTTAAAGCAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000065527.11 ENSMUST00000178026.2 ENSMUST00000181645.8 |
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