Pregenerated sensors for RAET1D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078452Ensembl transcript IDs: ENSMUST00000095795.5, ENSMUST00000182677.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCACTTGCTGTTCTTGGAGAGGTCCTGGATTCAGTTCCCAGTATTaGAAACCAACTGTAACTCCAGTTCCACAGGATCCGATGCCCTCC | + |
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Preference number: 1 (lower is better) Translates to: STCCSWRGPGFSSQY*KPTVTPVPQDPMPS Trigger: GGAGGGCATCGGATCCTGTGGAACTGGAGTTACAGTTGGTTTCCAATACTGGGAACTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR CCA 90 bp | ATAAGGCTCAGTAGCAAAGAGCACTTGCTGTTCTTGGAGAGGTCCTaGATTCAGTTCCCAGTATTGGAAACCAACTGTAACTCCAGTTCC | + |
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Preference number: 1 (lower is better) Translates to: IRLSSKEHLLFLERS*IQFPVLETNCNSSS Trigger: GGAACTGGAGTTACAGTTGGTTTCCAATACTGGGAACTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCTCTTTGCTACTGAGCCTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR CAA 90 bp | GAGCACTTGCTGTTCTTGGAGAGGTCCTGGATTCAGTTCCCAGTATaGGAAACCAACTGTAACTCCAGTTCCACAGGATCCGATGCCCTC | + |
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Preference number: 2 (lower is better) Translates to: EHLLFLERSWIQFPV*ETNCNSSSTGSDAL Trigger: GAGGGCATCGGATCCTGTGGAACTGGAGTTACAGTTGGTTTCCAATACTGGGAACTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR GCA 90 bp | AAGAGCACTTGCTGTTCTTGGAGAGGTCCTGGATTCAGTTCCCAGTATTGGAAATTCCACAGGATCCGATaGCCTCCTCTGGCCTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: KSTCCSWRGPGFSSQYWKFHRIR*PPLASP Trigger: AGGAGAGGCCAGAGGAGGGCATCGGATCCTGTGGAA...TTTCCAATACTGGGAACTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR GCA 90 bp | CCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAATTCCACAGGATCCGATaGCCTCCTCTGGCCTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: PSYIATNDVITGHDSHFKFHRIR*PPLASP Trigger: AGGAGAGGCCAGAGGAGGGCATCGGATCCTGTGGAA...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CCA 90 bp | GGACGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTTCTTGGAGAGGTCCTaGATTCAGTTCCCAGTATTG | + |
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Preference number: 2 (lower is better) Translates to: GRPPSYIATNDVITGHDSFLERS*IQFPVL Trigger: CAATACTGGGAACTGAATCCAGGACCTCTCCAAGAA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACGTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CCA 90 bp | CGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATAGCACTTGCTGTTCTTaGAGAGGTCCTGGATTCAGT | + |
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Preference number: 2 (lower is better) Translates to: RPPSYIATNDVITGHDSHSTCCS*RGPGFS Trigger: ACTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCT...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CCA 90 bp | GAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTAATATCCGATGCCCTCCTCTaGCCTCTCCTTGGGTATAAT | + |
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Preference number: 2 (lower is better) Translates to: ETINFIVKLTVGLALGLISDALL*PLLGYN Trigger: ATTATACCCAAGGAGAGGCCAGAGGAGGGCATCGGA...TATTAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CCA 90 bp | GGACGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTTTCAGTTCCCAGTATTaGAAACCAACTGTAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: GRPPSYIATNDVITGHDSFSSQY*KPTVTP Trigger: TGGAGTTACAGTTGGTTTCCAATACTGGGAACTGAA...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACGTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR GCA 90 bp | CGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATGCTTACTGTGGGACTTaGCCTGGGTTTAATAATATT | + |
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Preference number: 2 (lower is better) Translates to: RPPSYIATNDVITGHDSHAYCGT*PGFNNI Trigger: AATATTATTAAACCCAGGGCAAGTCCCACAGTAAGC...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CCA 90 bp | GAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTAATAAGCACTTGCTGTTCTTaGAGAGGTCCTGGATTCAGT | + |
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Preference number: 2 (lower is better) Translates to: ETINFIVKLTVGLALGLISTCCS*RGPGFS Trigger: ACTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCT...TATTAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CCA 90 bp | GAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTAATATTCTTGGAGAGGTCCTaGATTCAGTTCCCAGTATTG | + |
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Preference number: 2 (lower is better) Translates to: ETINFIVKLTVGLALGLIFLERS*IQFPVL Trigger: CAATACTGGGAACTGAATCCAGGACCTCTCCAAGAA...TATTAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CCA 90 bp | TCTGAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTATTCAGTTCCCAGTATTaGAAACCAACTGTAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: SETINFIVKLTVGLALGLFSSQY*KPTVTP Trigger: TGGAGTTACAGTTGGTTTCCAATACTGGGAACTGAA...TAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTCAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CAA 90 bp | GGACGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTGAGCACTTGCTGTTCTaGGAGAGGTCCTGGATTCAG | + |
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Preference number: 3 (lower is better) Translates to: GRPPSYIATNDVITGHDSEHLLF*ERSWIQ Trigger: CTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCTC...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CAA 90 bp | GGACGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTAGTAGCAAAGAGCACTaGCTGTTCTTGGAGAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: GRPPSYIATNDVITGHDSSSKEH*LFLERS Trigger: GGACCTCTCCAAGAACAGCAAGTGCTCTTTGCTACT...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACGTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CAA 90 bp | GAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTAATAGAGCACTTGCTGTTCTaGGAGAGGTCCTGGATTCAG | + |
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Preference number: 3 (lower is better) Translates to: ETINFIVKLTVGLALGLIEHLLF*ERSWIQ Trigger: CTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCTC...TATTAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR-3UTR CAA 90 bp | TCTGAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTAAGTAGCAAAGAGCACTaGCTGTTCTTGGAGAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: SETINFIVKLTVGLALGLSSKEH*LFLERS Trigger: GGACCTCTCCAAGAACAGCAAGTGCTCTTTGCTACT...TAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| 3UTR CAA 72 bp | CTGTTCTTGGAGAGGTCCTGGATTCAGTTCCCAGTATaGGAAACCAACTGTAACTCCAGTTCCACAGGATCC | + |
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Preference number: 4 (lower is better) Translates to: LFLERSWIQFPV*ETNCNSSSTGS Trigger: GGATCCTGTGGAACTGGAGTTACAGTTGGTTTCCAATACTGGGAACTGAATCCAGGACCTCTCCAAGAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR TCA 90 bp | TCTGAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTATGGAAGCGGGGAAGTTaGTGTAAGCTGGGTGATACT | + |
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Preference number: 4 (lower is better) Translates to: SETINFIVKLTVGLALGLWKRGS*CKLGDT Trigger: AGTATCACCCAGCTTACATCAACTTCCCCGCTTCCA...TAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CCA 90 bp | GAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTAATACTTCACTTCATCTGCTaGGGTAGGAGCCTTGATGGT | + |
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Preference number: 4 (lower is better) Translates to: ETINFIVKLTVGLALGLILHFIC*GRSLDG Trigger: ACCATCAAGGCTCCTACCCCAGCAGATGAAGTGAAG...TATTAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR TCA 90 bp | CCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAATGGAAGCGGGGAAGTTaGTGTAAGCTGGGTGATACT | + |
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Preference number: 4 (lower is better) Translates to: PSYIATNDVITGHDSHFKWKRGS*CKLGDT Trigger: AGTATCACCCAGCTTACATCAACTTCCCCGCTTCCA...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR GCA 90 bp | GGACGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTGGCTTTTCCTTGGACTaGTTTAAGAATTCATCCATT | + |
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Preference number: 4 (lower is better) Translates to: GRPPSYIATNDVITGHDSGFSLD*FKNSSI Trigger: AATGGATGAATTCTTAAAGCAGTCCAAGGAAAAGCC...ACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CCA 90 bp | CCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAACTTCACTTCATCTGCTaGGGTAGGAGCCTTGATGGT | + |
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Preference number: 4 (lower is better) Translates to: PSYIATNDVITGHDSHFKLHFIC*GRSLDG Trigger: ACCATCAAGGCTCCTACCCCAGCAGATGAAGTGAAG...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CCA 90 bp | CGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATGGTCACCTGAAGTCATaGTCTTGTTTATGTTACTTA | + |
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Preference number: 4 (lower is better) Translates to: RPPSYIATNDVITGHDSHGHLKS*SCLCYL Trigger: TAAGTAACATAAACAAGACCATGACTTCAGGTGACC...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR GCA 90 bp | TCTGAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTAGGCTTTTCCTTGGACTaGTTTAAGAATTCATCCATT | + |
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Preference number: 4 (lower is better) Translates to: SETINFIVKLTVGLALGLGFSLD*FKNSSI Trigger: AATGGATGAATTCTTAAAGCAGTCCAAGGAAAAGCC...TAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CCA 90 bp | CCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAATTGTCCCTCAACTTCTaGCACAAATCTTTCAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: PSYIATNDVITGHDSHFKLSLNF*HKSFRG Trigger: ACCTCTGAAAGATTTGTGCCAGAAGTTGAGGGACAA...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CCA 90 bp | CCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATTTTAAAGGTCACCTGAAGTCATaGTCTTGTTTATGTTACTTA | + |
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Preference number: 4 (lower is better) Translates to: PSYIATNDVITGHDSHFKGHLKS*SCLCYL Trigger: TAAGTAACATAAACAAGACCATGACTTCAGGTGACC...TTTAAAATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CAA 90 bp | CGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATCCACTTCAGTGGCATTaGCTGTCTCCCCTGGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: RPPSYIATNDVITGHDSHPLQWH*LSPLGH Trigger: GTGACCCAGGGGAGACAGCAAATGCCACTGAAGTGG...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CCA 90 bp | ATGGAGGATAAGTATTTCACCCACGAAGCACTTCACTTCATCTGCTaGGGTAGGAGCCTTGATGGTCAAGTTGCACCTAAGAGAGTGTGC | + |
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Preference number: 5 (lower is better) Translates to: MEDKYFTHEALHFIC*GRSLDGQVAPKRVC Trigger: GCACACTCTCTTAGGTGCAACTTGACCATCAAGGCTCCTACCCCAGCAGATGAAGTGAAGTGCTTCGTGGGTGAAATACTTATCCTCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CCA 90 bp | GGCACAAATCTTTCAGAGGTTGTGTTAAACATTCCCCCACTTCAGTaGCATTTGCTGTCTCCCCTGGGTCACCTGAAGTCATGGTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: GTNLSEVVLNIPPLQ*HLLSPLGHLKSWSC Trigger: ACAAGACCATGACTTCAGGTGACCCAGGGGAGACAGCAAATGCCACTGAAGTGGGGGAATGTTTAACACAACCTCTGAAAGATTTGTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CAA 90 bp | CGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATGCTGGGGTAGGAGCCTaGATGGTCAAGTTGCACCTA | + |
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Preference number: 5 (lower is better) Translates to: RPPSYIATNDVITGHDSHAGVGA*MVKLHL Trigger: TAGGTGCAACTTGACCATCAAGGCTCCTACCCCAGC...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CAA 90 bp | AAGAGCACTTGCTGTTCTTGGAGAGGTCCTGGATTCAGTTCCCAGTATTGGAAAGCCTTGATGGTCAAGTaGCACCTAAGAGAGTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: KSTCCSWRGPGFSSQYWKALMVK*HLRECA Trigger: TGCACACTCTCTTAGGTGCAACTTGACCATCAAGGC...TTTCCAATACTGGGAACTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCTCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CAA 90 bp | TCTGAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTACCACTTCAGTGGCATTaGCTGTCTCCCCTGGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: SETINFIVKLTVGLALGLPLQWH*LSPLGH Trigger: GTGACCCAGGGGAGACAGCAAATGCCACTGAAGTGG...TAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CAA 90 bp | CGTCCTCCATCATACATTGCTACAAACGATGTGATAACTGGCCATGACAGTCATGCCTTGATGGTCAAGTaGCACCTAAGAGAGTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: RPPSYIATNDVITGHDSHALMVK*HLRECA Trigger: TGCACACTCTCTTAGGTGCAACTTGACCATCAAGGC...ATGACTGTCATGGCCAGTTATCACATCGTTTGTAGCAATGTATGATGGAGGACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CAA 90 bp | TCTGAAACAATCAACTTTATTGTGAAGCTTACTGTGGGACTTGCCCTGGGTTTAGCTGGGGTAGGAGCCTaGATGGTCAAGTTGCACCTA | + |
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Preference number: 5 (lower is better) Translates to: SETINFIVKLTVGLALGLAGVGA*MVKLHL Trigger: TAGGTGCAACTTGACCATCAAGGCTCCTACCCCAGC...TAAACCCAGGGCAAGTCCCACAGTAAGCTTCACAATAAAGTTGATTGTTTCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CCA 90 bp | TCCCCTGGGTCACCTGAAGTCATGGTCTTGTTTATGTTACTTAAATaGAGGATAAGTATTTCACCCACGAAGCACTTCACTTCATCTGCT | + |
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Preference number: 5 (lower is better) Translates to: SPGSPEVMVLFMLLK*RISISPTKHFTSSA Trigger: AGCAGATGAAGTGAAGTGCTTCGTGGGTGAAATACTTATCCTCCATTTAAGTAACATAAACAAGACCATGACTTCAGGTGACCCAGGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS-3UTR CAA 90 bp | AAGAGCACTTGCTGTTCTTGGAGAGGTCCTGGATTCAGTTCCCAGTATTGGAAACCTGAAGTCATGGTCTaGTTTATGTTACTTAAATGG | + |
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Preference number: 5 (lower is better) Translates to: KSTCCSWRGPGFSSQYWKPEVMV*FMLLKW Trigger: CCATTTAAGTAACATAAACAAGACCATGACTTCAGG...TTTCCAATACTGGGAACTGAATCCAGGACCTCTCCAAGAACAGCAAGTGCTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CCA 72 bp | TGGCTGGTAGGTGGAAGCGGGGAAGTTGATGTAAGCTaGGTGATACTGGGGGACCTTGAGGTTGATCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: WLVGGSGEVDVS*VILGDLEVDLG Trigger: GCCAAGATCAACCTCAAGGTCCCCCAGTATCACCCAGCTTACATCAACTTCCCCGCTTCCACCTACCAGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CAA 90 bp | ATTTCACCCACGAAGCACTTCACTTCATCTGCTGGGGTAGGAGCCTaGATGGTCAAGTTGCACCTAAGAGAGTGTGCATCATCTAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: ISPTKHFTSSAGVGA*MVKLHLRECASSSP Trigger: CGGGCTAGATGATGCACACTCTCTTAGGTGCAACTTGACCATCAAGGCTCCTACCCCAGCAGATGAAGTGAAGTGCTTCGTGGGTGAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CCA 72 bp | CTTTCAGAGGTTGTGTTAAACATTCCCCCACTTCAGTaGCATTTGCTGTCTCCCCTGGGTCACCTGAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: LSEVVLNIPPLQ*HLLSPLGHLKS Trigger: TGACTTCAGGTGACCCAGGGGAGACAGCAAATGCCACTGAAGTGGGGGAATGTTTAACACAACCTCTGAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CAA 72 bp | ACGAAGCACTTCACTTCATCTGCTGGGGTAGGAGCCTaGATGGTCAAGTTGCACCTAAGAGAGTGTGCATCA | + |
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Preference number: 6 (lower is better) Translates to: TKHFTSSAGVGA*MVKLHLRECAS Trigger: TGATGCACACTCTCTTAGGTGCAACTTGACCATCAAGGCTCCTACCCCAGCAGATGAAGTGAAGTGCTTCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS GCA 72 bp | GATAAGTATTTCACCCACGAAGCACTTCACTTCATCTaGTGGGGTAGGAGCCTTGATGGTCAAGTTGCACCT | + |
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Preference number: 6 (lower is better) Translates to: DKYFTHEALHFI*WGRSLDGQVAP Trigger: AGGTGCAACTTGACCATCAAGGCTCCTACCCCAGCAGATGAAGTGAAGTGCTTCGTGGGTGAAATACTTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CCA 72 bp | AAGTATTTCACCCACGAAGCACTTCACTTCATCTGCTaGGGTAGGAGCCTTGATGGTCAAGTTGCACCTAAG | + |
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Preference number: 6 (lower is better) Translates to: KYFTHEALHFIC*GRSLDGQVAPK Trigger: CTTAGGTGCAACTTGACCATCAAGGCTCCTACCCCAGCAGATGAAGTGAAGTGCTTCGTGGGTGAAATACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CCA 72 bp | AGTCCCACAGAGATAAATCCTTTCTTAGAAGTAGAGTaGCTGGTAGGTGGAAGCGGGGAAGTTGATGTAAGC | + |
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Preference number: 6 (lower is better) Translates to: SPTEINPFLEVE*LVGGSGEVDVS Trigger: GCTTACATCAACTTCCCCGCTTCCACCTACCAGCCACTCTACTTCTAAGAAAGGATTTATCTCTGTGGGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CCA 72 bp | TCCACTTTGGTGTTAGACACCTTGTCCCTCAACTTCTaGCACAAATCTTTCAGAGGTTGTGTTAAACATTCC | + |
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Preference number: 6 (lower is better) Translates to: STLVLDTLSLNF*HKSFRGCVKHS Trigger: GGAATGTTTAACACAACCTCTGAAAGATTTGTGCCAGAAGTTGAGGGACAAGGTGTCTAACACCAAAGTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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| CDS CAA 72 bp | TTTGCTGTCTCCCCTGGGTCACCTGAAGTCATGGTCTaGTTTATGTTACTTAAATGGAGGATAAGTATTTCA | + |
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Preference number: 6 (lower is better) Translates to: FAVSPGSPEVMV*FMLLKWRISIS Trigger: TGAAATACTTATCCTCCATTTAAGTAACATAAACAAGACCATGACTTCAGGTGACCCAGGGGAGACAGCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095795.5 ENSMUST00000182677.8 |
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