Pregenerated sensors for RAD54B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078773Ensembl transcript IDs: ENSMUST00000070755.13, ENSMUST00000095145.12, ENSMUST00000108306.9, ENSMUST00000178725.2
Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAGGCTGGCCTGCATCTTCTCATCTGCCTCTACCTCCCAAGGGCTaGGGTTACAAGCTTATGCAACAAATGCAATTCTCTTTGCATTAT | + |
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Preference number: 1 (lower is better) Translates to: QGWPASSHLPLPPKG*GYKLMQQMQFSLHY Trigger: ATAATGCAAAGAGAATTGCATTTGTTGCATAAGCTTGTAACCTCAGCCCTTGGGAGGTAGAGGCAGATGAGAAGATGCAGGCCAGCCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR GCA 90 bp | ATATCAACAGAAGAAAGTGATGGAGACTCGGATCCCTCCACAACATaGATTAACTCATGTTCTTCTCTTTGCTCTAAAGTATCACTGAGT | + |
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Preference number: 1 (lower is better) Translates to: ISTEESDGDSDPSTT*INSCSSLCSKVSLS Trigger: ACTCAGTGATACTTTAGAGCAAAGAGAAGAACATGAGTTAATGCATGTTGTGGAGGGATCCGAGTCTCCATCACTTTCTTCTGTTGATAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR CCA 90 bp | TCTTTGTCACCAGGGGACGGCAGGCACCTCAAACAGGCCAAGCAATGTTCTATCGAAGGTAGCCAAGGCTaGCCTGCATCTTCTCATCTG | + |
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Preference number: 2 (lower is better) Translates to: SLSPGDGRHLKQAKQCSIEGSQG*PASSHL Trigger: CAGATGAGAAGATGCAGGCCAGCCTTGGCTACCTTC...GATAGAACATTGCTTGGCCTGTTTGAGGTGCCTGCCGTCCCCTGGTGACAAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR TCA 90 bp | TCTTTGTCACCAGGGGACGGCAGGCACCTCAAACAGGCCAAGCAATGTTCTATCACTGAGTTGAGGATTTaGAACCAGGGGAGGAGATGG | + |
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Preference number: 2 (lower is better) Translates to: SLSPGDGRHLKQAKQCSITELRI*NQGRRW Trigger: CCATCTCCTCCCCTGGTTTCAAATCCTCAACTCAGT...GATAGAACATTGCTTGGCCTGTTTGAGGTGCCTGCCGTCCCCTGGTGACAAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR TCA 90 bp | ATCTTCTCATCTGCCTCTACCTCCCAAGGGCTGAGGTTACAAGCTTATGCAACACCATCCCTCTTCTCCTaGACATACAATCCAAAATTC | + |
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Preference number: 2 (lower is better) Translates to: IFSSASTSQGLRLQAYATPSLFS*TYNPKF Trigger: GAATTTTGGATTGTATGTTCAGGAGAAGAGGGATGG...TGTTGCATAAGCTTGTAACCTCAGCCCTTGGGAGGTAGAGGCAGATGAGAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR TCA 90 bp | TCTCTCTCTTCCTTAGAAGAAGAAGGCTCTCTTGATATAATGATGGGTTCTTCAGGGCCGTCGTTGTCTTaGTGCTGCTGTTCTTCAAAC | + |
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Preference number: 2 (lower is better) Translates to: SLSSLEEEGSLDIMMGSSGPSLS*CCCSSN Trigger: GTTTGAAGAACAGCAGCATCAAGACAACGACGGCCC...TGAAGAACCCATCATTATATCAAGAGAGCCTTCTTCTTCTAAGGAAGAGAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| 3UTR-3UTR GCA 90 bp | GATCATCATGAAAACAAAGCAAGCTCATTTCCTCCCGGTGTGCTTGTCCAGATAATGAAAGACGTGAGGTaGAGCAAGTGCTTAACACGT | + |
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Preference number: 2 (lower is better) Translates to: DHHENKASSFPPGVLVQIMKDVR*SKCLTR Trigger: ACGTGTTAAGCACTTGCTGCACCTCACGTCTTTCAT...TATCTGGACAAGCACACCGGGAGGAAATGAGCTTGCTTTGTTTTCATGATGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108306.9 |
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| 3UTR-3UTR CCA 90 bp | ACTGTTTTAAGACTTTTCCAAATATCTTCCAACTGTAAGTTCTACCACCACTCTGGTTCAAGGCCAGCCTaGTCTACAGAGCTAGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: TVLRLFQISSNCKFYHHSGSRPA*STELVP Trigger: TGGAACTAGCTCTGTAGACCAGGCTGGCCTTGAACC...AGAGTGGTGGTAGAACTTACAGTTGGAAGATATTTGGAAAAGTCTTAAAACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR TCA 90 bp | TGTCTTAGAAAACAATTGAGGGAAGGCAACAAACTAGATTACCATGTCAGCCAAAAAGTATCACTGAGTTaGGGATTTGAAACCAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: CLRKQLREGNKLDYHVSQKVSLS*GFETRG Trigger: TCCCCTGGTTTCAAATCCTCAACTCAGTGATACTTT...TTGGCTGACATGGTAATCTAGTTTGTTGCCTTCCCTCAATTGTTTTCTAAGACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR TCA 90 bp | TGTCTTAGAAAACAATTGAGGGAAGGCAACAAACTAGATTACCATGTCAGCCAAGACAGAAGATGGAGATaGTGTCATTCTCATATCAAC | + |
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Preference number: 2 (lower is better) Translates to: CLRKQLREGNKLDYHVSQDRRWR*CHSHIN Trigger: GTTGATATGAGAATGACATCATCTCCATCTTCTGTC...TTGGCTGACATGGTAATCTAGTTTGTTGCCTTCCCTCAATTGTTTTCTAAGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR GCA 90 bp | TACAATTCCCTGGGTTTTGTAACCCAACAATGTGTAAAAGTCAGCTTTCTTTGTGATCCCTCCACAACATaGATTAACTCATGTTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: YNSLGFVTQQCVKVSFLCDPSTT*INSCSS Trigger: AGAAGAACATGAGTTAATGCATGTTGTGGAGGGATC...ACAAAGAAAGCTGACTTTTACACATTGTTGGGTTACAAAACCCAGGGAATTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR GCA 90 bp | TGTCTTAGAAAACAATTGAGGGAAGGCAACAAACTAGATTACCATGTCAGCCAATCATGTTCTTCTCTTTaGTCTAAAGTATCACTGAGT | + |
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Preference number: 2 (lower is better) Translates to: CLRKQLREGNKLDYHVSQSCSSL*SKVSLS Trigger: ACTCAGTGATACTTTAGAGCAAAGAGAAGAACATGA...TTGGCTGACATGGTAATCTAGTTTGTTGCCTTCCCTCAATTGTTTTCTAAGACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR GCA 90 bp | AGGGCTGAGGTTACAAGCTTATGCAACAAATGCAATTCTCTTTGCATTATTTTTTTAATGTCCTCTTCTTaGTTCACCTCTACAGTGATA | + |
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Preference number: 2 (lower is better) Translates to: RAEVTSLCNKCNSLCIIFLMSSS*FTSTVI Trigger: TATCACTGTAGAGGTGAAGCAAGAAGAGGACATTAA...AAAAATAATGCAAAGAGAATTGCATTTGTTGCATAAGCTTGTAACCTCAGCCCT 36% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR TCA 72 bp | ATTATCTGGTGTTCCTCTTTTAACATTTGCAGGACCTaGGGGTCACATCTTAGCAGAGACCTAAAGTGTTCT | + |
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Preference number: 3 (lower is better) Translates to: IIWCSSFNICRT*GSHLSRDLKCS Trigger: AGAACACTTTAGGTCTCTGCTAAGATGTGACCCTCAGGTCCTGCAAATGTTAAAAGAGGAACACCAGATAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR GCA 72 bp | GAAGAAAGTGATGGAGACTCGGATCCCTCCACAACATaGATTAACTCATGTTCTTCTCTTTGCTCTAAAGTA | + |
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Preference number: 3 (lower is better) Translates to: EESDGDSDPSTT*INSCSSLCSKV Trigger: TACTTTAGAGCAAAGAGAAGAACATGAGTTAATGCATGTTGTGGAGGGATCCGAGTCTCCATCACTTTCTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR CAA 90 bp | AGAAAACAATTGAGGGAAGGCAACAAACTAGATTACCATGTCAGCCAATCAATACTTAATGTCCTCTTCTaGCTTCACCTCTACAGTGAT | + |
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Preference number: 3 (lower is better) Translates to: RKQLREGNKLDYHVSQSILNVLF*LHLYSD Trigger: ATCACTGTAGAGGTGAAGCAAGAAGAGGACATTAAG...TATTGATTGGCTGACATGGTAATCTAGTTTGTTGCCTTCCCTCAATTGTTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR CAA 90 bp | TACAATTCCCTGGGTTTTGTAACCCAACAATGTGTAAAAGTCAGCTTTCTTTGTAGCAATGTTCTATCCTaGAGCTACATCTCCAACCAA | + |
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Preference number: 3 (lower is better) Translates to: YNSLGFVTQQCVKVSFLCSNVLS*SYISNQ Trigger: TTGGTTGGAGATGTAGCTCAAGGATAGAACATTGCT...ACAAAGAAAGCTGACTTTTACACATTGTTGGGTTACAAAACCCAGGGAATTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| 3UTR-3UTR CAA 90 bp | AGGGCTGAGGTTACAAGCTTATGCAACAAATGCAATTCTCTTTGCATTATTTTTTGTCTTAGAAAACAATaGAGGGAAGGCAACAAACTA | + |
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Preference number: 3 (lower is better) Translates to: RAEVTSLCNKCNSLCIIFCLRKQ*REGNKL Trigger: TAGTTTGTTGCCTTCCCTCAATTGTTTTCTAAGACA...AAAAATAATGCAAAGAGAATTGCATTTGTTGCATAAGCTTGTAACCTCAGCCCT 36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS-3UTR CCA 90 bp | GAGAGGCTAGAAAGGGCCGTCGTTGTCTTGATGCTGCTGTTCTTCAAACGGTGTCTGGTGATTCTCGTCTaGGCGCGGCATAACAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: ERLERAVVVLMLLFFKRCLVILV*ARHNKG Trigger: GCCCTTGTTATGCCGCGCCCAGACGAGAATCACCAG...ACACCGTTTGAAGAACAGCAGCATCAAGACAACGACGGCCCTTTCTAGCCTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| CDS-3UTR GCA 90 bp | AGGGCCGTCGTTGTCTTGATGCTGCTGTTCTTCAAACGGTGTCCCTCATCACAGTCTTTATTACTGGCTTaGCGCCATAGGGCCCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: RAVVVLMLLFFKRCPSSQSLLLA*RHRAPD Trigger: GTCAGGGGCCCTATGGCGGCAAGCCAGTAATAAAGA...CTGTGATGAGGGACACCGTTTGAAGAACAGCAGCATCAAGACAACGACGGCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| CDS-3UTR CCA 90 bp | GCTAGAAAGGGCCGTCGTTGTCTTGATGCTGCTGTTCTTCAAACGGTGTCCCTCTCCGTCTTTCTGATGTaGTCGGAGGTGGTGTACAAG | + |
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Preference number: 4 (lower is better) Translates to: ARKGRRCLDAAVLQTVSLSVFLM*SEVVYK Trigger: CTTGTACACCACCTCCGACCACATCAGAAAGACGGA...GAGGGACACCGTTTGAAGAACAGCAGCATCAAGACAACGACGGCCCTTTCTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| CDS-3UTR TCA 90 bp | GACTTCCTGAGTTCTTCTAAGGATAAAACGTCCAGTGAGGCGCGTGAGCTCAGTACTGTAGGGTCCAGATaGGCGAGATACACTGCAACG | + |
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Preference number: 4 (lower is better) Translates to: DFLSSSKDKTSSEARELSTVGSR*ARYTAT Trigger: CGTTGCAGTGTATCTCGCTCATCTGGACCCTACAGT...ACTGAGCTCACGCGCCTCACTGGACGTTTTATCCTTAGAAGAACTCAGGAAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| 3UTR CAA 72 bp | TTCTCACAGGAGAGGCTAGAAAGGGCCGTCGTTGTCTaGATGCTGCTGTTCTTCAAACGGTGTCCCTCATCA | + |
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Preference number: 4 (lower is better) Translates to: FSQERLERAVVV*MLLFFKRCPSS Trigger: TGATGAGGGACACCGTTTGAAGAACAGCAGCATCAAGACAACGACGGCCCTTTCTAGCCTCTCCTGTGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| CDS-3UTR GCA 90 bp | TCTTTGTCACCAGGGGACGGCAGGCACCTCAAACAGGCCAAGCAATGTTCTATCCTCCTTACTCACATCTaGATTACTTCTTCCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: SLSPGDGRHLKQAKQCSILLTHI*ITSSWR Trigger: CCTCCAGGAAGAAGTAATGCAGATGTGAGTAAGGAG...GATAGAACATTGCTTGGCCTGTTTGAGGTGCCTGCCGTCCCCTGGTGACAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS-3UTR GCA 90 bp | CCAGTGAGAATTACTGTCTTCTCACAGGAGAGGCTAGAAAGGGCCGTCGTTGTCGCCACATTTGCCAACTaGTCTCATTCCCATCACACA | + |
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Preference number: 4 (lower is better) Translates to: PVRITVFSQERLERAVVVATFAN*SHSHHT Trigger: TGTGTGATGGGAATGAGAGCAGTTGGCAAATGTGGC...GACAACGACGGCCCTTTCTAGCCTCTCCTGTGAGAAGACAGTAATTCTCACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| CDS-3UTR CCA 90 bp | AACTGGGGTACCAGTGAGAATTACTGTCTTCTCACAGGAGAGGCTAGAAAGGGCTGTCTTCTTTATTACTaGCTTGCCGCCATAGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: NWGTSENYCLLTGEARKGCLLYY*LAAIGP Trigger: GGGCCCTATGGCGGCAAGCCAGTAATAAAGAAGACA...GCCCTTTCTAGCCTCTCCTGTGAGAAGACAGTAATTCTCACTGGTACCCCAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| CDS-3UTR TCA 90 bp | AAGCACGTGATCATCATGAAAACAAAGCAAGCTCATTTCCTCCCGGTGTGCTTGGACTTTCCCTGCACCTaGCTTGGTGCTGCAGATCTT | + |
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Preference number: 4 (lower is better) Translates to: KHVIIMKTKQAHFLPVCLDFPCT*LGAADL Trigger: AAGATCTGCAGCACCAAGTCAGGTGCAGGGAAAGTC...CAAGCACACCGGGAGGAAATGAGCTTGCTTTGTTTTCATGATGATCACGTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108306.9 |
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| CDS-3UTR CCA 90 bp | ATCTTCTCATCTGCCTCTACCTCCCAAGGGCTGAGGTTACAAGCTTATGCAACATCCCTGCACCTGACTTaGTGCTGCAGATCTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: IFSSASTSQGLRLQAYATSLHLT*CCRSSH Trigger: ATGAGAAGATCTGCAGCACCAAGTCAGGTGCAGGGA...TGTTGCATAAGCTTGTAACCTCAGCCCTTGGGAGGTAGAGGCAGATGAGAAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS-3UTR TCA 90 bp | ACTGGGGTACCAGTGAGAATTACTGTCTTCTCACAGGAGAGGCTAGAAAGGGCCACTCATAGAGGAAGATaGTTCCGTCTTTCTGATGTG | + |
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Preference number: 4 (lower is better) Translates to: TGVPVRITVFSQERLERATHRGR*FRLSDV Trigger: CACATCAGAAAGACGGAATCATCTTCCTCTATGAGT...GGCCCTTTCTAGCCTCTCCTGTGAGAAGACAGTAATTCTCACTGGTACCCCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| CDS-3UTR CCA 90 bp | AAGCACGTGATCATCATGAAAACAAAGCAAGCTCATTTCCTCCCGGTGTGCTTGTCCCTGCACCTGACTTaGTGCTGCAGATCTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: KHVIIMKTKQAHFLPVCLSLHLT*CCRSSH Trigger: ATGAGAAGATCTGCAGCACCAAGTCAGGTGCAGGGA...CAAGCACACCGGGAGGAAATGAGCTTGCTTTGTTTTCATGATGATCACGTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108306.9 |
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| CDS-3UTR TCA 90 bp | GAGAGGCTAGAAAGGGCCGTCGTTGTCTTGATGCTGCTGTTCTTCAAACGGTGTCTTCCCAGCCATTTTTaGAATTCTTTCCTCCAATTA | + |
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Preference number: 4 (lower is better) Translates to: ERLERAVVVLMLLFFKRCLPSHF*NSFLQL Trigger: TAATTGGAGGAAAGAATTTCAAAAATGGCTGGGAAG...ACACCGTTTGAAGAACAGCAGCATCAAGACAACGACGGCCCTTTCTAGCCTCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
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| CDS-3UTR CCA 90 bp | AAGCACGTGATCATCATGAAAACAAAGCAAGCTCATTTCCTCCCGGTGTGCTTGCAAAACTGGAGGAAGTaGATCTACTCTAGTCCCATC | + |
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Preference number: 4 (lower is better) Translates to: KHVIIMKTKQAHFLPVCLQNWRK*IYSSPI Trigger: GATGGGACTAGAGTAGATCCACTTCCTCCAGTTTTG...CAAGCACACCGGGAGGAAATGAGCTTGCTTTGTTTTCATGATGATCACGTGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108306.9 |
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| CDS-3UTR TCA 90 bp | GATCATCATGAAAACAAAGCAAGCTCATTTCCTCCCGGTGTGCTTGTCCAGATACTGGACTCATCTTTGTaGTCTCCTTACTCACATCTG | + |
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Preference number: 4 (lower is better) Translates to: DHHENKASSFPPGVLVQILDSSL*SPYSHL Trigger: CAGATGTGAGTAAGGAGATCACAAAGATGAGTCCAG...TATCTGGACAAGCACACCGGGAGGAAATGAGCTTGCTTTGTTTTCATGATGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108306.9 |
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| CDS-3UTR GCA 90 bp | GATCATCATGAAAACAAAGCAAGCTCATTTCCTCCCGGTGTGCTTGTCCAGATACTCCTTACTCACATCTaGATTACTTCTTCCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: DHHENKASSFPPGVLVQILLTHI*ITSSWR Trigger: CCTCCAGGAAGAAGTAATGCAGATGTGAGTAAGGAG...TATCTGGACAAGCACACCGGGAGGAAATGAGCTTGCTTTGTTTTCATGATGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108306.9 |
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| CDS-3UTR TCA 90 bp | ACTGTTTTAAGACTTTTCCAAATATCTTCCAACTGTAAGTTCTACCACCACTCTGACTTTCCCTGCACCTaGCTTGGTGCTGCAGATCTT | + |
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Preference number: 4 (lower is better) Translates to: TVLRLFQISSNCKFYHHSDFPCT*LGAADL Trigger: AAGATCTGCAGCACCAAGTCAGGTGCAGGGAAAGTC...AGAGTGGTGGTAGAACTTACAGTTGGAAGATATTTGGAAAAGTCTTAAAACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS-3UTR CCA 90 bp | TGTCTTAGAAAACAATTGAGGGAAGGCAACAAACTAGATTACCATGTCAGCCAATTGCACTGGAGGAAGTaGATCTACTCTAGTCCCATC | + |
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Preference number: 4 (lower is better) Translates to: CLRKQLREGNKLDYHVSQLHWRK*IYSSPI Trigger: GATGGGACTAGAGTAGATCCACTTCCTCCAGTGCAA...TTGGCTGACATGGTAATCTAGTTTGTTGCCTTCCCTCAATTGTTTTCTAAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS-3UTR CCA 90 bp | TACAATTCCCTGGGTTTTGTAACCCAACAATGTGTAAAAGTCAGCTTTCTTTGTGAACTGGTACCAGCTTaGGCAGTCTCATCCAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: YNSLGFVTQQCVKVSFLCELVPA*AVSSKF Trigger: AAACTTGGATGAGACTGCCCAAGCTGGTACCAGTTC...ACAAAGAAAGCTGACTTTTACACATTGTTGGGTTACAAAACCCAGGGAATTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS-3UTR TCA 90 bp | AGAAAACAATTGAGGGAAGGCAACAAACTAGATTACCATGTCAGCCAATCAATACTGGACTCATCTTTGTaGTCTCCTTACTCACATCTG | + |
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Preference number: 4 (lower is better) Translates to: RKQLREGNKLDYHVSQSILDSSL*SPYSHL Trigger: CAGATGTGAGTAAGGAGATCACAAAGATGAGTCCAG...TATTGATTGGCTGACATGGTAATCTAGTTTGTTGCCTTCCCTCAATTGTTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS-3UTR CCA 90 bp | GATCATCATGAAAACAAAGCAAGCTCATTTCCTCCCGGTGTGCTTGTCCAGATATGCATTACTTCTTCCTaGAGGTATGAATCTTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: DHHENKASSFPPGVLVQICITSS*RYESCF Trigger: AAAACAAGATTCATACCTCCAGGAAGAAGTAATGCA...TATCTGGACAAGCACACCGGGAGGAAATGAGCTTGCTTTGTTTTCATGATGATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108306.9 |
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| CDS-3UTR GCA 90 bp | ACTGTTTTAAGACTTTTCCAAATATCTTCCAACTGTAAGTTCTACCACCACTCTAGTCTCATCCAAGTTTaGACTGGAGGAAGTGGATCT | + |
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Preference number: 4 (lower is better) Translates to: TVLRLFQISSNCKFYHHSSLIQV*TGGSGS Trigger: AGATCCACTTCCTCCAGTGCAAACTTGGATGAGACT...AGAGTGGTGGTAGAACTTACAGTTGGAAGATATTTGGAAAAGTCTTAAAACAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS-3UTR CCA 90 bp | AGAAAACAATTGAGGGAAGGCAACAAACTAGATTACCATGTCAGCCAATCAATAACCCTGAAACAGTTTTaGATCTGGACTCATCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: RKQLREGNKLDYHVSQSITLKQF*IWTHLC Trigger: ACAAAGATGAGTCCAGATCCAAAACTGTTTCAGGGT...TATTGATTGGCTGACATGGTAATCTAGTTTGTTGCCTTCCCTCAATTGTTTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS-3UTR CCA 90 bp | TACAATTCCCTGGGTTTTGTAACCCAACAATGTGTAAAAGTCAGCTTTCTTTGTTGCATTACTTCTTCCTaGAGGTATGAATCTTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: YNSLGFVTQQCVKVSFLCCITSS*RYESCF Trigger: AAAACAAGATTCATACCTCCAGGAAGAAGTAATGCA...ACAAAGAAAGCTGACTTTTACACATTGTTGGGTTACAAAACCCAGGGAATTGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS CCA 90 bp | CATCCGCTGGTGATTCTCGTCTGGGCGCGGCATAACAAGGGCATTTaGTGTGCACGGGTTATGGCGCGGTCTGCAGTCATTCCATCTTTT | + |
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Preference number: 5 (lower is better) Translates to: HPLVILVWARHNKGI*CARVMARSAVIPSF Trigger: AAAAGATGGAATGACTGCAGACCGCGCCATAACCCGTGCACACCAAATGCCCTTGTTATGCCGCGCCCAGACGAGAATCACCAGCGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070755.13 ENSMUST00000178725.2 |
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| CDS CCA 90 bp | GCAGCGAACTGGTACCAGCTTGGGCAGTCTCATCCAAGTTTGCACTaGAGGAAGTGGATCTACTCTAGTCCCATCACCCACTTCCCTAGG | + |
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Preference number: 5 (lower is better) Translates to: AANWYQLGQSHPSLH*RKWIYSSPITHFPR Trigger: CCTAGGGAAGTGGGTGATGGGACTAGAGTAGATCCACTTCCTCCAGTGCAAACTTGGATGAGACTGCCCAAGCTGGTACCAGTTCGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS TCA 90 bp | TTACTGGCTTGCCGCCATAGGGCCCCTGACACTGTAGGGTCCAGATaGGCGAGATACACTGCAACGTTTTCCCTAAGCCCATTTCATCAG | + |
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Preference number: 5 (lower is better) Translates to: LLACRHRAPDTVGSR*ARYTATFSLSPFHQ Trigger: CTGATGAAATGGGCTTAGGGAAAACGTTGCAGTGTATCTCGCTCATCTGGACCCTACAGTGTCAGGGGCCCTATGGCGGCAAGCCAGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070755.13 ENSMUST00000178725.2 |
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| CDS GCA 90 bp | TACCTGCAGCGAACTGGTACCAGCTTGGGCAGTCTCATCCAAGTTTaGACTGGAGGAAGTGGATCTACTCTAGTCCCATCACCCACTTCC | + |
|
Preference number: 5 (lower is better) Translates to: YLQRTGTSLGSLIQV*TGGSGSTLVPSPTS Trigger: GGAAGTGGGTGATGGGACTAGAGTAGATCCACTTCCTCCAGTGCAAACTTGGATGAGACTGCCCAAGCTGGTACCAGTTCGCTGCAGGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
||
| CDS CCA 90 bp | AATAGGAGAGCAGTGCCTATTAAACATCCGCTGGTGATTCTCGTCTaGGCGCGGCATAACAAGGGCATTTGGTGTGCACGGGTTATGGCG | + |
|
Preference number: 5 (lower is better) Translates to: NRRAVPIKHPLVILV*ARHNKGIWCARVMA Trigger: CGCCATAACCCGTGCACACCAAATGCCCTTGTTATGCCGCGCCCAGACGAGAATCACCAGCGGATGTTTAATAGGCACTGCTCTCCTATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070755.13 ENSMUST00000178725.2 |
||
| CDS GCA 90 bp | CACAGACTGAGAGCGCAGCAGCTTTCGGTAAAGTTCAATCTGCAATaGTCCTGGTCGGCAAAAGACTACATTCTCTATCTTAGGCGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: HRLRAQQLSVKFNLQ*SWSAKDYILYLRRE Trigger: CTCCCGCCTAAGATAGAGAATGTAGTCTTTTGCCGACCAGGAGCATTGCAGATTGAACTTTACCGAAAGCTGCTGCGCTCTCAGTCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CCA 90 bp | CTTGGACTCTGTGATTTCTTTAGAGGCCGAATGAACTGGAGGAAGTaGATCTACTCTAGTCCCATCACCCACTTCCCTAGGGATTCCCTC | + |
|
Preference number: 5 (lower is better) Translates to: LGLCDFFRGRMNWRK*IYSSPITHFPRDSL Trigger: GAGGGAATCCCTAGGGAAGTGGGTGATGGGACTAGAGTAGATCCACTTCCTCCAGTTCATTCGGCCTCTAAAGAAATCACAGAGTCCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CCA 90 bp | TCCCATCACACACTCATAGAGGAAGATGATTCCGTCTTTCTGATGTaGTCGGAGGTGGTGTACAAGGTGAGGGTCTATCACGACATCCAC | + |
|
Preference number: 5 (lower is better) Translates to: SHHTLIEEDDSVFLM*SEVVYKVRVYHDIH Trigger: GTGGATGTCGTGATAGACCCTCACCTTGTACACCACCTCCGACCACATCAGAAAGACGGAATCATCTTCCTCTATGAGTGTGTGATGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070755.13 ENSMUST00000178725.2 |
||
| CDS TCA 90 bp | TCCTCTTCTTGTGCCTTGGACTCTGTGATTTCTTTAGAGGCCGAATaGACTGGAGGAAGTGGATCTACTCTAGTCCCATCACCCACTTCC | + |
|
Preference number: 5 (lower is better) Translates to: SSSCALDSVISLEAE*TGGSGSTLVPSPTS Trigger: GGAAGTGGGTGATGGGACTAGAGTAGATCCACTTCCTCCAGTTCATTCGGCCTCTAAAGAAATCACAGAGTCCAAGGCACAAGAAGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS TCA 90 bp | CAAGGGTGGTTGCACAGCTTCTTTAGGGCCCCTATGCAGATGAGGTaGGCACTATTTTCCAATAGTCCTTGCAAACAGAACCTCACAGAC | + |
|
Preference number: 5 (lower is better) Translates to: QGWLHSFFRAPMQMR*ALFSNSPCKQNLTD Trigger: GTCTGTGAGGTTCTGTTTGCAAGGACTATTGGAAAATAGTGCTCACCTCATCTGCATAGGGGCCCTAAAGAAGCTGTGCAACCACCCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS TCA 90 bp | AGAGGCAAGGGTGGTTGCACAGCTTCTTTAGGGCCCCTATGCAGATaGGGTGAGCACTATTTTCCAATAGTCCTTGCAAACAGAACCTCA | + |
|
Preference number: 5 (lower is better) Translates to: RGKGGCTASLGPLCR*GEHYFPIVLANRTS Trigger: TGAGGTTCTGTTTGCAAGGACTATTGGAAAATAGTGCTCACCTCATCTGCATAGGGGCCCTAAAGAAGCTGTGCAACCACCCTTGCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS TCA 90 bp | ATTTGCCAACTGCTCTCATTCCCATCACACACTCATAGAGGAAGATaGTTCCGTCTTTCTGATGTGGTCGGAGGTGGTGTACAAGGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: ICQLLSFPSHTHRGR*FRLSDVVGGGVQGE Trigger: CTCACCTTGTACACCACCTCCGACCACATCAGAAAGACGGAATCATCTTCCTCTATGAGTGTGTGATGGGAATGAGAGCAGTTGGCAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070755.13 ENSMUST00000178725.2 |
||
| CDS TCA 90 bp | TCACTTTCTCAGTGGGACGAAGTTCATGGATCACTGCCAGGAGCTTaGCTAACACCTGTAGTTTTCCTGACTCTTCCTCAGAGAACTGCA | + |
|
Preference number: 5 (lower is better) Translates to: SLSQWDEVHGSLPGA*LTPVVFLTLPQRTA Trigger: TGCAGTTCTCTGAGGAAGAGTCAGGAAAACTACAGGTGTTAGTCAAGCTCCTGGCAGTGATCCATGAACTTCGTCCCACTGAGAAAGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS-3UTR CAA 90 bp | GGAGATGGCTTAATGTCCTCTTCTTGCTTCACCTCTACAGTGATAGCAACAGGACACTGGGGCAAGGATTaGAACTGCATACACCTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: GDGLMSSSCFTSTVIATGHWGKD*NCIHLD Trigger: ATCCAGGTGTATGCAGTTCAAATCCTTGCCCCAGTG...TCCTGTTGCTATCACTGTAGAGGTGAAGCAAGAAGAGGACATTAAGCCATCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
||
| CDS-3UTR CAA 90 bp | AAGCACGTGATCATCATGAAAACAAAGCAAGCTCATTTCCTCCCGGTGTGCTTGCACTGGGGCAAGGATTaGAACTGCATACACCTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: KHVIIMKTKQAHFLPVCLHWGKD*NCIHLD Trigger: ATCCAGGTGTATGCAGTTCAAATCCTTGCCCCAGTG...CAAGCACACCGGGAGGAAATGAGCTTGCTTTGTTTTCATGATGATCACGTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108306.9 |
||
| CDS TCA 90 bp | GGACAGCAGGACTTCCACTTCCGTGCTGAAAACACTTGCCACTGTTaGAGTCATCAGAAGAGATTGTCCCCAGGATTTCTATTTCTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: GQQDFHFRAENTCHC*SHQKRLSPGFLFLS Trigger: GGAAAGAAATAGAAATCCTGGGGACAATCTCTTCTGATGACTTCAACAGTGGCAAGTGTTTTCAGCACGGAAGTGGAAGTCCTGCTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CCA 90 bp | CTGAGAGCGCAGCAGCTTTCGGTAAAGTTCAATCTGCAATGCTCCTaGTCGGCAAAAGACTACATTCTCTATCTTAGGCGGGAGATATTT | + |
|
Preference number: 5 (lower is better) Translates to: LRAQQLSVKFNLQCS*SAKDYILYLRREIF Trigger: AAATATCTCCCGCCTAAGATAGAGAATGTAGTCTTTTGCCGACCAGGAGCATTGCAGATTGAACTTTACCGAAAGCTGCTGCGCTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS TCA 90 bp | TTTGAACTGCATACACCTGGATCATTTTGTGACTGTTCAGCACCCTaGAACAGTTTTGGATCTGGACTCATCTTTGTGATCTCCTTACTC | + |
|
Preference number: 5 (lower is better) Translates to: FELHTPGSFCDCSAP*NSFGSGLIFVISLL Trigger: GAGTAAGGAGATCACAAAGATGAGTCCAGATCCAAAACTGTTTCAGGGTGCTGAACAGTCACAAAATGATCCAGGTGTATGCAGTTCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000070755.13 ENSMUST00000095145.12 ENSMUST00000108306.9 |
||
| CDS-3UTR CAA 90 bp | ACTGTTTTAAGACTTTTCCAAATATCTTCCAACTGTAAGTTCTACCACCACTCTCGAACTGGTACCAGCTaGGGCAGTCTCATCCAAGTT | + |
|
Preference number: 5 (lower is better) Translates to: TVLRLFQISSNCKFYHHSRTGTS*GSLIQV Trigger: AACTTGGATGAGACTGCCCAAGCTGGTACCAGTTCG...AGAGTGGTGGTAGAACTTACAGTTGGAAGATATTTGGAAAAGTCTTAAAACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
||
| CDS CCA 90 bp | GTATTTACTATTGAAACTATCAACAATGTGCTGCCTTTGAGAGACTaGTGTTTGGCCATCAAGTCTTGCACAAGCATATCCATGACGCTT | + |
|
Preference number: 5 (lower is better) Translates to: VFTIETINNVLPLRD*CLAIKSCTSISMTL Trigger: AAGCGTCATGGATATGCTTGTGCAAGACTTGATGGCCAAACACCAGTCTCTCAAAGGCAGCACATTGTTGATAGTTTCAATAGTAAATAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS TCA 90 bp | TCAGTAGAGTATTTACTATTGAAACTATCAACAATGTGCTGCCTTTaGGAGACTGGTGTTTGGCCATCAAGTCTTGCACAAGCATATCCA | + |
|
Preference number: 5 (lower is better) Translates to: SVEYLLLKLSTMCCL*ETGVWPSSLAQAYP Trigger: TGGATATGCTTGTGCAAGACTTGATGGCCAAACACCAGTCTCTCAAAGGCAGCACATTGTTGATAGTTTCAATAGTAAATACTCTACTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CCA 90 bp | GACGCTTACATACTTCTTCTAGAACATTCAAGGTTTGTCTGTAGTTaGATACCAAAATCACTTTCTCAGTGGGACGAAGTTCATGGATCA | + |
|
Preference number: 5 (lower is better) Translates to: DAYILLLEHSRFVCS*IPKSLSQWDEVHGS Trigger: TGATCCATGAACTTCGTCCCACTGAGAAAGTGATTTTGGTATCCAACTACAGACAAACCTTGAATGTTCTAGAAGAAGTATGTAAGCGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS-3UTR CAA 90 bp | CTCTCTTCCTTAGAAGAAGAAGGCTCTCTTGATATAATGATGGGTTCTTCATATTCAACGGTGAATATCTaGATCCTTTCACTTCCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: LSSLEEEGSLDIMMGSSYSTVNI*ILSLPS Trigger: GCTGGGAAGTGAAAGGATCAAGATATTCACCGTTGA...ATATGAAGAACCCATCATTATATCAAGAGAGCCTTCTTCTTCTAAGGAAGAGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178725.2 |
||
| CDS TCA 72 bp | TGCCGCCATAGGGCCCCTGACACTGTAGGGTCCAGATaGGCGAGATACACTGCAACGTTTTCCCTAAGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: CRHRAPDTVGSR*ARYTATFSLSP Trigger: TGGGCTTAGGGAAAACGTTGCAGTGTATCTCGCTCATCTGGACCCTACAGTGTCAGGGGCCCTATGGCGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070755.13 ENSMUST00000178725.2 |
||
| CDS CCA 72 bp | GCAGTGCCTATTAAACATCCGCTGGTGATTCTCGTCTaGGCGCGGCATAACAAGGGCATTTGGTGTGCACGG | + |
|
Preference number: 6 (lower is better) Translates to: AVPIKHPLVILV*ARHNKGIWCAR Trigger: CCGTGCACACCAAATGCCCTTGTTATGCCGCGCCCAGACGAGAATCACCAGCGGATGTTTAATAGGCACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070755.13 ENSMUST00000178725.2 |
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| CDS CAA 72 bp | TTGCCCTTCACAGAGCTGAACAAGAGGCAAGGGTGGTaGCACAGCTTCTTTAGGGCCCCTATGCAGATGAGG | + |
|
Preference number: 6 (lower is better) Translates to: LPFTELNKRQGW*HSFFRAPMQMR Trigger: CCTCATCTGCATAGGGGCCCTAAAGAAGCTGTGCAACCACCCTTGCCTCTTGTTCAGCTCTGTGAAGGGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CCA 72 bp | CTTGGGCAGTCTCATCCAAGTTTGCACTGGAGGAAGTaGATCTACTCTAGTCCCATCACCCACTTCCCTAGG | + |
|
Preference number: 6 (lower is better) Translates to: LGQSHPSLHWRK*IYSSPITHFPR Trigger: CCTAGGGAAGTGGGTGATGGGACTAGAGTAGATCCACTTCCTCCAGTGCAAACTTGGATGAGACTGCCCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS CCA 72 bp | TGGTACCAGCTTGGGCAGTCTCATCCAAGTTTGCACTaGAGGAAGTGGATCTACTCTAGTCCCATCACCCAC | + |
|
Preference number: 6 (lower is better) Translates to: WYQLGQSHPSLH*RKWIYSSPITH Trigger: GTGGGTGATGGGACTAGAGTAGATCCACTTCCTCCAGTGCAAACTTGGATGAGACTGCCCAAGCTGGTACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
||
| CDS CAA 72 bp | GCGAACTGGTACCAGCTTGGGCAGTCTCATCCAAGTTaGCACTGGAGGAAGTGGATCTACTCTAGTCCCATC | + |
|
Preference number: 6 (lower is better) Translates to: ANWYQLGQSHPS*HWRKWIYSSPI Trigger: GATGGGACTAGAGTAGATCCACTTCCTCCAGTGCAAACTTGGATGAGACTGCCCAAGCTGGTACCAGTTCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS CAA 90 bp | TTACCTGCAGCGAACTGGTACCAGCTTGGGCAGTCTCATCCAAGTTaGCACTGGAGGAAGTGGATCTACTCTAGTCCCATCACCCACTTC | + |
|
Preference number: 6 (lower is better) Translates to: LPAANWYQLGQSHPS*HWRKWIYSSPITHF Trigger: GAAGTGGGTGATGGGACTAGAGTAGATCCACTTCCTCCAGTGCAAACTTGGATGAGACTGCCCAAGCTGGTACCAGTTCGCTGCAGGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
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| CDS GCA 72 bp | CGAACTGGTACCAGCTTGGGCAGTCTCATCCAAGTTTaGACTGGAGGAAGTGGATCTACTCTAGTCCCATCA | + |
|
Preference number: 6 (lower is better) Translates to: RTGTSLGSLIQV*TGGSGSTLVPS Trigger: TGATGGGACTAGAGTAGATCCACTTCCTCCAGTGCAAACTTGGATGAGACTGCCCAAGCTGGTACCAGTTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095145.12 |
||
| CDS TCA 72 bp | CAGTGGGACGAAGTTCATGGATCACTGCCAGGAGCTTaGCTAACACCTGTAGTTTTCCTGACTCTTCCTCAG | + |
|
Preference number: 6 (lower is better) Translates to: QWDEVHGSLPGA*LTPVVFLTLPQ Trigger: CTGAGGAAGAGTCAGGAAAACTACAGGTGTTAGTCAAGCTCCTGGCAGTGATCCATGAACTTCGTCCCACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS CCA 72 bp | AGGGTTAGAAAAGCATTTCCTGGCAGCCTGAGAACTTaGGACAGCAGGACTTCCACTTCCGTGCTGAAAACA | + |
|
Preference number: 6 (lower is better) Translates to: RVRKAFPGSLRT*DSRTSTSVLKT Trigger: TGTTTTCAGCACGGAAGTGGAAGTCCTGCTGTCCCAAGTTCTCAGGCTGCCAGGAAATGCTTTTCTAACCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS CAA 90 bp | ATTACTGTCTTCTCACAGGAGAGGCTAGAAAGGGCCGTCGTTGTCTaGATGCTGCTGTTCTTCAAACGGTGTCCCTCATCACAGATCAGA | + |
|
Preference number: 6 (lower is better) Translates to: ITVFSQERLERAVVV*MLLFFKRCPSSQIR Trigger: TCTGATCTGTGATGAGGGACACCGTTTGAAGAACAGCAGCATCAAGACAACGACGGCCCTTTCTAGCCTCTCCTGTGAGAAGACAGTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS TCA 72 bp | CTGCTCTCATTCCCATCACACACTCATAGAGGAAGATaGTTCCGTCTTTCTGATGTGGTCGGAGGTGGTGTA | + |
|
Preference number: 6 (lower is better) Translates to: LLSFPSHTHRGR*FRLSDVVGGGV Trigger: TACACCACCTCCGACCACATCAGAAAGACGGAATCATCTTCCTCTATGAGTGTGTGATGGGAATGAGAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070755.13 ENSMUST00000178725.2 |
||
| CDS TCA 72 bp | GGTGGTTGCACAGCTTCTTTAGGGCCCCTATGCAGATaGGGTGAGCACTATTTTCCAATAGTCCTTGCAAAC | + |
|
Preference number: 6 (lower is better) Translates to: GGCTASLGPLCR*GEHYFPIVLAN Trigger: GTTTGCAAGGACTATTGGAAAATAGTGCTCACCTCATCTGCATAGGGGCCCTAAAGAAGCTGTGCAACCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS TCA 72 bp | ATGGTCTCCAGAAAAATGTTTCCACTGCTTCAGCTGTaGCATGGACAGAGGTCTCAAGGCGTCAGACTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: MVSRKMFPLLQL*HGQRSQGVRLL Trigger: CAGAAGTCTGACGCCTTGAGACCTCTGTCCATGTCACAGCTGAAGCAGTGGAAACATTTTTCTGGAGACCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS CCA 72 bp | TGTGATTTCTTTAGAGGCCGAATGAACTGGAGGAAGTaGATCTACTCTAGTCCCATCACCCACTTCCCTAGG | + |
|
Preference number: 6 (lower is better) Translates to: CDFFRGRMNWRK*IYSSPITHFPR Trigger: CCTAGGGAAGTGGGTGATGGGACTAGAGTAGATCCACTTCCTCCAGTTCATTCGGCCTCTAAAGAAATCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CCA 72 bp | CTTGGACTCTGTGATTTCTTTAGAGGCCGAATGAACTaGAGGAAGTGGATCTACTCTAGTCCCATCACCCAC | + |
|
Preference number: 6 (lower is better) Translates to: LGLCDFFRGRMN*RKWIYSSPITH Trigger: GTGGGTGATGGGACTAGAGTAGATCCACTTCCTCCAGTTCATTCGGCCTCTAAAGAAATCACAGAGTCCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CCA 72 bp | GCTCTTCCACTGAAAACTGGATATGTTCAGATGATCTaGTTAGGTCTACCACTGCCCCAGAAAGGCCTTGCT | + |
|
Preference number: 6 (lower is better) Translates to: ALPLKTGYVQMI*LGLPLPQKGLA Trigger: AGCAAGGCCTTTCTGGGGCAGTGGTAGACCTAACCAGATCATCTGAACATATCCAGTTTTCAGTGGAAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CAA 72 bp | TCAGTGGGACGAAGTTCATGGATCACTGCCAGGAGCTaGACTAACACCTGTAGTTTTCCTGACTCTTCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: SVGRSSWITARS*TNTCSFPDSSS Trigger: TGAGGAAGAGTCAGGAAAACTACAGGTGTTAGTCAAGCTCCTGGCAGTGATCCATGAACTTCGTCCCACTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CAA 90 bp | ATCACTTTCTCAGTGGGACGAAGTTCATGGATCACTGCCAGGAGCTaGACTAACACCTGTAGTTTTCCTGACTCTTCCTCAGAGAACTGC | + |
|
Preference number: 6 (lower is better) Translates to: ITFSVGRSSWITARS*TNTCSFPDSSSENC Trigger: GCAGTTCTCTGAGGAAGAGTCAGGAAAACTACAGGTGTTAGTCAAGCTCCTGGCAGTGATCCATGAACTTCGTCCCACTGAGAAAGTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS TCA 72 bp | TGTGCCTTGGACTCTGTGATTTCTTTAGAGGCCGAATaGACTGGAGGAAGTGGATCTACTCTAGTCCCATCA | + |
|
Preference number: 6 (lower is better) Translates to: CALDSVISLEAE*TGGSGSTLVPS Trigger: TGATGGGACTAGAGTAGATCCACTTCCTCCAGTTCATTCGGCCTCTAAAGAAATCACAGAGTCCAAGGCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CCA 72 bp | CAGCAGCTTTCGGTAAAGTTCAATCTGCAATGCTCCTaGTCGGCAAAAGACTACATTCTCTATCTTAGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: QQLSVKFNLQCS*SAKDYILYLRR Trigger: CCGCCTAAGATAGAGAATGTAGTCTTTTGCCGACCAGGAGCATTGCAGATTGAACTTTACCGAAAGCTGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS TCA 72 bp | TTGCACAGCTTCTTTAGGGCCCCTATGCAGATGAGGTaGGCACTATTTTCCAATAGTCCTTGCAAACAGAAC | + |
|
Preference number: 6 (lower is better) Translates to: LHSFFRAPMQMR*ALFSNSPCKQN Trigger: GTTCTGTTTGCAAGGACTATTGGAAAATAGTGCTCACCTCATCTGCATAGGGGCCCTAAAGAAGCTGTGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS TCA 72 bp | CCTTTTTCCCCTGTGCACTCACAGTCAAGCAGGTCATaGGTGACACAATGTGAACTTTCATGTAGTGTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: PFSPVHSQSSRS*VTQCELSCSVN Trigger: GTTCACACTACATGAAAGTTCACATTGTGTCACTCATGACCTGCTTGACTGTGAGTGCACAGGGGAAAAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS GCA 72 bp | AGAGCGCAGCAGCTTTCGGTAAAGTTCAATCTGCAATaGTCCTGGTCGGCAAAAGACTACATTCTCTATCTT | + |
|
Preference number: 6 (lower is better) Translates to: RAQQLSVKFNLQ*SWSAKDYILYL Trigger: AAGATAGAGAATGTAGTCTTTTGCCGACCAGGAGCATTGCAGATTGAACTTTACCGAAAGCTGCTGCGCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CCA 72 bp | GATACCAAAATCACTTTCTCAGTGGGACGAAGTTCATaGATCACTGCCAGGAGCTTGACTAACACCTGTAGT | + |
|
Preference number: 6 (lower is better) Translates to: DTKITFSVGRSS*ITARSLTNTCS Trigger: ACTACAGGTGTTAGTCAAGCTCCTGGCAGTGATCCATGAACTTCGTCCCACTGAGAAAGTGATTTTGGTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CAA 72 bp | GCTGCCTTTGAGAGACTGGTGTTTGGCCATCAAGTCTaGCACAAGCATATCCATGACGCTTACATACTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: AAFERLVFGHQV*HKHIHDAYILL Trigger: AAGAAGTATGTAAGCGTCATGGATATGCTTGTGCAAGACTTGATGGCCAAACACCAGTCTCTCAAAGGCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CAA 72 bp | ACTATCAACAATGTGCTGCCTTTGAGAGACTGGTGTTaGGCCATCAAGTCTTGCACAAGCATATCCATGACG | + |
|
Preference number: 6 (lower is better) Translates to: TINNVLPLRDWC*AIKSCTSISMT Trigger: CGTCATGGATATGCTTGTGCAAGACTTGATGGCCAAACACCAGTCTCTCAAAGGCAGCACATTGTTGATAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CAA 72 bp | CACTGCCCCAGAAAGGCCTTGCTTACTGATCTGCCTTaGATAGATCTTTTCCTCTATTGTACCTGTAGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: HCPRKALLTDLP*IDLFLYCTCSQ Trigger: CTGACTACAGGTACAATAGAGGAAAAGATCTATCAAAGGCAGATCAGTAAGCAAGGCCTTTCTGGGGCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS TCA 72 bp | TTAGGTCTACCACTGCCCCAGAAAGGCCTTGCTTACTaGTCTGCCTTTGATAGATCTTTTCCTCTATTGTAC | + |
|
Preference number: 6 (lower is better) Translates to: LGLPLPQKGLAY*SAFDRSFPLLY Trigger: GTACAATAGAGGAAAAGATCTATCAAAGGCAGATCAGTAAGCAAGGCCTTTCTGGGGCAGTGGTAGACCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
||
| CDS CAA 90 bp | CCAAACAACACTGAAATATTTAAGCAAGCTGCTAGCTTCCTCTTCTaGTGCCTTGGACTCTGTGATTTCTTTAGAGGCCGAATGAACTGG | + |
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Preference number: 6 (lower is better) Translates to: PNNTEIFKQAASFLF*CLGLCDFFRGRMNW Trigger: CCAGTTCATTCGGCCTCTAAAGAAATCACAGAGTCCAAGGCACAAGAAGAGGAAGCTAGCAGCTTGCTTAAATATTTCAGTGTTGTTTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS CAA 90 bp | CAACAATGTGCTGCCTTTGAGAGACTGGTGTTTGGCCATCAAGTCTaGCACAAGCATATCCATGACGCTTACATACTTCTTCTAGAACAT | + |
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Preference number: 6 (lower is better) Translates to: QQCAAFERLVFGHQV*HKHIHDAYILLLEH Trigger: ATGTTCTAGAAGAAGTATGTAAGCGTCATGGATATGCTTGTGCAAGACTTGATGGCCAAACACCAGTCTCTCAAAGGCAGCACATTGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS TCA 72 bp | CATACACCTGGATCATTTTGTGACTGTTCAGCACCCTaGAACAGTTTTGGATCTGGACTCATCTTTGTGATC | + |
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Preference number: 6 (lower is better) Translates to: HTPGSFCDCSAP*NSFGSGLIFVI Trigger: GATCACAAAGATGAGTCCAGATCCAAAACTGTTTCAGGGTGCTGAACAGTCACAAAATGATCCAGGTGTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000070755.13 ENSMUST00000095145.12 ENSMUST00000108306.9 |
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| CDS CCA 72 bp | ATTGAAACTATCAACAATGTGCTGCCTTTGAGAGACTaGTGTTTGGCCATCAAGTCTTGCACAAGCATATCC | + |
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Preference number: 6 (lower is better) Translates to: IETINNVLPLRD*CLAIKSCTSIS Trigger: GGATATGCTTGTGCAAGACTTGATGGCCAAACACCAGTCTCTCAAAGGCAGCACATTGTTGATAGTTTCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS CAA 72 bp | ACTGAAATATTTAAGCAAGCTGCTAGCTTCCTCTTCTaGTGCCTTGGACTCTGTGATTTCTTTAGAGGCCGA | + |
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Preference number: 6 (lower is better) Translates to: TEIFKQAASFLF*CLGLCDFFRGR Trigger: TCGGCCTCTAAAGAAATCACAGAGTCCAAGGCACAAGAAGAGGAAGCTAGCAGCTTGCTTAAATATTTCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS CAA 90 bp | ACTATTGAAACTATCAACAATGTGCTGCCTTTGAGAGACTGGTGTTaGGCCATCAAGTCTTGCACAAGCATATCCATGACGCTTACATAC | + |
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Preference number: 6 (lower is better) Translates to: TIETINNVLPLRDWC*AIKSCTSISMTLTY Trigger: GTATGTAAGCGTCATGGATATGCTTGTGCAAGACTTGATGGCCAAACACCAGTCTCTCAAAGGCAGCACATTGTTGATAGTTTCAATAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS TCA 72 bp | GGTGTTTGGCCATCAAGTCTTGCACAAGCATATCCATaGCGCTTACATACTTCTTCTAGAACATTCAAGGTT | + |
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Preference number: 6 (lower is better) Translates to: GVWPSSLAQAYP*RLHTSSRTFKV Trigger: AACCTTGAATGTTCTAGAAGAAGTATGTAAGCGTCATGGATATGCTTGTGCAAGACTTGATGGCCAAACACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS CAA 90 bp | ATCAGTAGAGTATTTACTATTGAAACTATCAACAATGTGCTGCCTTaGAGAGACTGGTGTTTGGCCATCAAGTCTTGCACAAGCATATCC | + |
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Preference number: 6 (lower is better) Translates to: ISRVFTIETINNVLP*RDWCLAIKSCTSIS Trigger: GGATATGCTTGTGCAAGACTTGATGGCCAAACACCAGTCTCTCAAAGGCAGCACATTGTTGATAGTTTCAATAGTAAATACTCTACTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS CAA 90 bp | GATTGTCCCCAGGATTTCTATTTCTTTCCCACCAATTATCAATGTTaGGCCCTCTTCTACATTCTCAAGGTCCTTGAATTTGTATCCAAT | + |
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Preference number: 6 (lower is better) Translates to: DCPQDFYFFPTNYQC*ALFYILKVLEFVSN Trigger: ATTGGATACAAATTCAAGGACCTTGAGAATGTAGAAGAGGGCCAAACATTGATAATTGGTGGGAAAGAAATAGAAATCCTGGGGACAATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS TCA 72 bp | TCAATGTTTGGCCCTCTTCTACATTCTCAAGGTCCTTaGATTTGTATCCAATGCCTCTTCCAATATCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: SMFGPLLHSQGP*ICIQCLFQYLF Trigger: GAAAAGATATTGGAAGAGGCATTGGATACAAATTCAAGGACCTTGAGAATGTAGAAGAGGGCCAAACATTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS TCA 72 bp | AATGTAGAATTGATAAACTCCTCGACTTTATGGTCCTaGTCAACGGTGAATATCTTGATCCTTTCACTTCCC | + |
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Preference number: 6 (lower is better) Translates to: NVELINSSTLWS*STVNILILSLP Trigger: GGGAAGTGAAAGGATCAAGATATTCACCGTTGATCAGGACCATAAAGTCGAGGAGTTTATCAATTCTACATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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| CDS CCA 72 bp | ATACTTCTTCTAGAACATTCAAGGTTTGTCTGTAGTTaGATACCAAAATCACTTTCTCAGTGGGACGAAGTT | + |
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Preference number: 6 (lower is better) Translates to: ILLLEHSRFVCS*IPKSLSQWDEV Trigger: AACTTCGTCCCACTGAGAAAGTGATTTTGGTATCCAACTACAGACAAACCTTGAATGTTCTAGAAGAAGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070755.13 |
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