Pregenerated sensors for RAD51B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059060Ensembl transcript IDs: ENSMUST00000079533.12, ENSMUST00000171210.3, ENSMUST00000218039.3
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCACGCTCTGCTCCGAAGTGAGGTCTGAGCCTGTCAGCGAGTTCTaGGGCCATCGACCTCCCTCTGACACTAGAGCAGACCCCCACGCC | + |
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Preference number: 1 (lower is better) Translates to: CTLCSEVRSEPVSEF*GHRPPSDTRADPHA Trigger: GGCGTGGGGGTCTGCTCTAGTGTCAGAGGGAGGTCGATGGCCTCAGAACTCGCTGACAGGCTCAGACCTCACTTCGGAGCAGAGCGTGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR GCA 90 bp | TTACGATGGCCGCTGACATCCCACGGTGGTGGAGCCCCTAGCCTCTaGATCCAGAGACTGGATAAAGGCTTCTTCATCTTCACCTTCCGG | + |
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Preference number: 1 (lower is better) Translates to: LRWPLTSHGGGAPSL*IQRLDKGFFIFTFR Trigger: CCGGAAGGTGAAGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCCACCACCGTGGGATGTCAGCGGCCATCGTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| 3UTR GCA 90 bp | TTTAACCCAAGCCGGGAGAAAACGACTTCCCACCTCAGTGTCTTGTaGCATGCTGAACAGTTCTCCACAGCAGCCCATGCTGTTTACTCA | + |
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Preference number: 1 (lower is better) Translates to: FNPSREKTTSHLSVL*HAEQFSTAAHAVYS Trigger: TGAGTAAACAGCATGGGCTGCTGTGGAGAACTGTTCAGCATGGCACAAGACACTGAGGTGGGAAGTCGTTTTCTCCCGGCTTGGGTTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR TCA 90 bp | CCATGGCCGCCTTCAGTTTCCCCCACGGTTTCGATATTTCATTTGTaGATCAGTTACTCTTTGGAGACCCCGGTTCTTTGTACACCTATT | + |
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Preference number: 1 (lower is better) Translates to: PWPPSVSPTVSIFHL*ISYSLETPVLCTPI Trigger: AATAGGTGTACAAAGAACCGGGGTCTCCAAAGAGTAACTGATTCACAAATGAAATATCGAAACCGTGGGGGAAACTGAAGGCGGCCATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR TCA 90 bp | TCACTCTTTGTTCTGCGAGGCTATGCACAATATACCAGTGGAACGTaGATTTATACTTACAATAGTCACAGCACTAATGACCTTCCAAAC | + |
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Preference number: 1 (lower is better) Translates to: SLFVLRGYAQYTSGT*IYTYNSHSTNDLPN Trigger: GTTTGGAAGGTCATTAGTGCTGTGACTATTGTAAGTATAAATTCACGTTCCACTGGTATATTGTGCATAGCCTCGCAGAACAAAGAGTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR TCA 90 bp | AGATTTAGTGGAAGAGTAACATCATTTACATTCTTACAAATCTGCTaGAGTTCTGGCCTGGTCATTGACAGCTGCCTTCTAAGATCAGTT | + |
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Preference number: 1 (lower is better) Translates to: RFSGRVTSFTFLQIC*SSGLVIDSCLLRSV Trigger: AACTGATCTTAGAAGGCAGCTGTCAATGACCAGGCCAGAACTTCAGCAGATTTGTAAGAATGTAAATGATGTTACTCTTCCACTAAATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR GCA 90 bp | TACTCTTTGGAGACCCCGGTTCTTTGTACACCTATTCTTTTTATTTaGGGAACAATACTTTATTCGGAAATGTTCCCTTCTGTAATTACA | + |
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Preference number: 1 (lower is better) Translates to: YSLETPVLCTPILFI*GTILYSEMFPSVIT Trigger: TGTAATTACAGAAGGGAACATTTCCGAATAAAGTATTGTTCCGCAAATAAAAAGAATAGGTGTACAAAGAACCGGGGTCTCCAAAGAGTA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR-3UTR TCA 90 bp | CAGTGGCCTCCAGGGACCCAAGATCACACGTTAGGAACCACAGTTCCCCAGGAAAGGGAATGGAGTTCATaGCTTGGGCTTGACCTTCTA | + |
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Preference number: 2 (lower is better) Translates to: QWPPGTQDHTLGTTVPQEREWSS*LGLDLL Trigger: TAGAAGGTCAAGCCCAAGTCATGAACTCCATTCCCT...TTCCTGGGGAACTGTGGTTCCTAACGTGTGATCTTGGGTCCCTGGAGGCCACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR-3UTR TCA 90 bp | CAGTGGCCTCCAGGGACCCAAGATCACACGTTAGGAACCACAGTTCCCCAGGAATGCTCTCTAGCACTGTaGACACAACCTTCTCAAAAG | + |
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Preference number: 2 (lower is better) Translates to: QWPPGTQDHTLGTTVPQECSLAL*TQPSQK Trigger: CTTTTGAGAAGGTTGTGTTCACAGTGCTAGAGAGCA...TTCCTGGGGAACTGTGGTTCCTAACGTGTGATCTTGGGTCCCTGGAGGCCACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR-3UTR TCA 90 bp | GTGGTGGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTTCCTGTTTCATTTCATaGGTCACATGCAATCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: VVEPLASASRDWIKASSSSCFIS*VTCNQH Trigger: GTGCTGATTGCATGTGACTCATGAAATGAAACAGGA...AGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCCACCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| 3UTR-3UTR CCA 90 bp | CAGTGGCCTCCAGGGACCCAAGATCACACGTTAGGAACCACAGTTCCCCAGGAAAGTATCCCAATTTGGTaGTCAAATATAGTGGTCAAC | + |
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Preference number: 2 (lower is better) Translates to: QWPPGTQDHTLGTTVPQESIPIW*SNIVVN Trigger: GTTGACCACTATATTTGACCACCAAATTGGGATACT...TTCCTGGGGAACTGTGGTTCCTAACGTGTGATCTTGGGTCCCTGGAGGCCACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTGCTCTCCCTAGGGGGTCCTGTTTCATTTCATaGGTCACATGCAATCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: FPSVITNLVSPPPALPRGSCFIS*VTCNQH Trigger: GTGCTGATTGCATGTGACTCATGAAATGAAACAGGA...CCCCCTAGGGAGAGCAGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| 3UTR-3UTR GCA 90 bp | GTGGTCAACTTGAAGATACTCTTTAAAAGCAATGCAAGGTTCCTGCCTCTTCCCCACCTCAGTGTCTTGTaGCATGCTGAACAGTTCTCC | + |
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Preference number: 2 (lower is better) Translates to: VVNLKILFKSNARFLPLPHLSVL*HAEQFS Trigger: GGAGAACTGTTCAGCATGGCACAAGACACTGAGGTG...GGGAAGAGGCAGGAACCTTGCATTGCTTTTAAAGAGTATCTTCAAGTTGACCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR-3UTR GCA 90 bp | TTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTGCTCTCCCTAGGGGGGGCATGGCTGAAAGGTaGTGTGTAAGTGCAAATTAT | + |
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Preference number: 2 (lower is better) Translates to: FPSVITNLVSPPPALPRGGMAER*CVSANY Trigger: ATAATTTGCACTTACACAGCACCTTTCAGCCATGCC...CCCCCTAGGGAGAGCAGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAA 47% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| 3UTR-3UTR GCA 90 bp | ATCATAGTGTCAATCCAGACTTGTAGCTTTAACTTAGGGAATGGAGTTCATGACGCAATGCAAGGTTCCTaGCTCTTCCCACTGTGTGGA | + |
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Preference number: 2 (lower is better) Translates to: IIVSIQTCSFNLGNGVHDAMQGS*LFPLCG Trigger: TCCACACAGTGGGAAGAGGCAGGAACCTTGCATTGC...GTCATGAACTCCATTCCCTAAGTTAAAGCTACAAGTCTGGATTGACACTATGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR CAA 90 bp | ACTGTTACCACCTCAACAGCAACCAACCAATTAATCCTCATTATGTaGGCTTCCGTTTCCTTTTTCCAAGCAGCGCAGTCCTGTTTCATT | + |
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Preference number: 2 (lower is better) Translates to: TVTTSTATNQLILIM*ASVSFFQAAQSCFI Trigger: AATGAAACAGGACTGCGCTGCTTGGAAAAAGGAAACGGAAGCCAACATAATGAGGATTAATTGGTTGGTTGCTGTTGAGGTGGTAACAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| 3UTR-3UTR GCA 90 bp | GAAATGTTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTGCTCTCCCTGGCATGGCTGAAAGGTaGTGTGTAAGTGCAAATTAT | + |
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Preference number: 2 (lower is better) Translates to: EMFPSVITNLVSPPPALPGMAER*CVSANY Trigger: ATAATTTGCACTTACACAGCACCTTTCAGCCATGCC...AGGGAGAGCAGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAACATTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| 3UTR-3UTR GCA 90 bp | CTTTATTCGGAAATGTTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTAAGGTGCTGTGTAAGTaGAAATTATTACGATGGCCG | + |
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Preference number: 2 (lower is better) Translates to: LYSEMFPSVITNLVSPPPKVLCK*KLLRWP Trigger: CGGCCATCGTAATAATTTGCACTTACACAGCACCTT...AGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAACATTTCCGAATAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| 3UTR CAA 90 bp | TTACTCTTTGGAGACCCCGGTTCTTTGTACACCTATTCTTTTTATTaGCGGAACAATACTTTATTCGGAAATGTTCCCTTCTGTAATTAC | + |
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Preference number: 2 (lower is better) Translates to: LLFGDPGSLYTYSFY*RNNTLFGNVPFCNY Trigger: GTAATTACAGAAGGGAACATTTCCGAATAAAGTATTGTTCCGCAAATAAAAAGAATAGGTGTACAAAGAACCGGGGTCTCCAAAGAGTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR CAA 90 bp | GATATTTCATTTGTGAATCAGTTACTCTTTGGAGACCCCGGTTCTTaGTACACCTATTCTTTTTATTTGCGGAACAATACTTTATTCGGA | + |
|
Preference number: 2 (lower is better) Translates to: DISFVNQLLFGDPGS*YTYSFYLRNNTLFG Trigger: TCCGAATAAAGTATTGTTCCGCAAATAAAAAGAATAGGTGTACAAAGAACCGGGGTCTCCAAAGAGTAACTGATTCACAAATGAAATATC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR TCA 72 bp | TGCTCCGAAGTGAGGTCTGAGCCTGTCAGCGAGTTCTaGGGCCATCGACCTCCCTCTGACACTAGAGCAGAC | + |
|
Preference number: 3 (lower is better) Translates to: CSEVRSEPVSEF*GHRPPSDTRAD Trigger: GTCTGCTCTAGTGTCAGAGGGAGGTCGATGGCCTCAGAACTCGCTGACAGGCTCAGACCTCACTTCGGAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR TCA 72 bp | ACTAATACCATGCACGCTCTGCTCCGAAGTGAGGTCTaGGCCTGTCAGCGAGTTCTGAGGCCATCGACCTCC | + |
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Preference number: 3 (lower is better) Translates to: TNTMHALLRSEV*ACQRVLRPSTS Trigger: GGAGGTCGATGGCCTCAGAACTCGCTGACAGGCTCAGACCTCACTTCGGAGCAGAGCGTGCATGGTATTAGT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR GCA 72 bp | CCGCTGACATCCCACGGTGGTGGAGCCCCTAGCCTCTaGATCCAGAGACTGGATAAAGGCTTCTTCATCTTC | + |
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Preference number: 3 (lower is better) Translates to: PLTSHGGGAPSL*IQRLDKGFFIF Trigger: GAAGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCCACCACCGTGGGATGTCAGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| 3UTR GCA 72 bp | AGCCGGGAGAAAACGACTTCCCACCTCAGTGTCTTGTaGCATGCTGAACAGTTCTCCACAGCAGCCCATGCT | + |
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Preference number: 3 (lower is better) Translates to: SREKTTSHLSVL*HAEQFSTAAHA Trigger: AGCATGGGCTGCTGTGGAGAACTGTTCAGCATGGCACAAGACACTGAGGTGGGAAGTCGTTTTCTCCCGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR GCA 72 bp | ATGACCTTCCAAACAACACTAATACCATGCACGCTCTaGTCCGAAGTGAGGTCTGAGCCTGTCAGCGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: MTFQTTLIPCTL*SEVRSEPVSEF Trigger: GAACTCGCTGACAGGCTCAGACCTCACTTCGGAGCAGAGCGTGCATGGTATTAGTGTTGTTTGGAAGGTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR-3UTR CAA 90 bp | GTGGTCAACTTGAAGATACTCTTTAAAAGCAATGCAAGGTTCCTGCCTCTTCCCTCCCACCTCAGTGTCTaGTGCCATGCTGAACAGTTC | + |
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Preference number: 3 (lower is better) Translates to: VVNLKILFKSNARFLPLPSHLSV*CHAEQF Trigger: GAACTGTTCAGCATGGCACAAGACACTGAGGTGGGA...GGGAAGAGGCAGGAACCTTGCATTGCTTTTAAAGAGTATCTTCAAGTTGACCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR TCA 72 bp | CTGGATAAAGGCTTCTTCATCTTCACCTTCCGGGTCTaGAATCACTGTTACCACCTCAACAGCAACCAACCA | + |
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Preference number: 3 (lower is better) Translates to: LDKGFFIFTFRV*NHCYHLNSNQP Trigger: TGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGGTGAAGATGAAGAAGCCTTTATCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| 3UTR TCA 72 bp | ATTCTTACAAATCTGCTGAAGTTCTGGCCTGGTCATTaGCAGCTGCCTTCTAAGATCAGTTTTGGCACCAAG | + |
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Preference number: 3 (lower is better) Translates to: ILTNLLKFWPGH*QLPSKISFGTK Trigger: CTTGGTGCCAAAACTGATCTTAGAAGGCAGCTGTCAATGACCAGGCCAGAACTTCAGCAGATTTGTAAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| 3UTR TCA 72 bp | CCTTCAGTTTCCCCCACGGTTTCGATATTTCATTTGTaGATCAGTTACTCTTTGGAGACCCCGGTTCTTTGT | + |
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Preference number: 3 (lower is better) Translates to: PSVSPTVSIFHL*ISYSLETPVLC Trigger: ACAAAGAACCGGGGTCTCCAAAGAGTAACTGATTCACAAATGAAATATCGAAACCGTGGGGGAAACTGAAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR TCA 72 bp | GTTCTGCGAGGCTATGCACAATATACCAGTGGAACGTaGATTTATACTTACAATAGTCACAGCACTAATGAC | + |
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Preference number: 3 (lower is better) Translates to: VLRGYAQYTSGT*IYTYNSHSTND Trigger: GTCATTAGTGCTGTGACTATTGTAAGTATAAATTCACGTTCCACTGGTATATTGTGCATAGCCTCGCAGAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR-3UTR CAA 90 bp | TCATTTGTGAATCAGTTACTCTTTGGAGACCCCGGTTCTTTGTACACCTATTCTTTAATCCTCATTATGTaGGCTTCCGTTTCCTTTTTC | + |
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Preference number: 3 (lower is better) Translates to: SFVNQLLFGDPGSLYTYSLILIM*ASVSFF Trigger: GAAAAAGGAAACGGAAGCCAACATAATGAGGATTAA...AGAATAGGTGTACAAAGAACCGGGGTCTCCAAAGAGTAACTGATTCACAAATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR GCA 72 bp | GAGACCCCGGTTCTTTGTACACCTATTCTTTTTATTTaGGGAACAATACTTTATTCGGAAATGTTCCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: ETPVLCTPILFI*GTILYSEMFPS Trigger: AGAAGGGAACATTTCCGAATAAAGTATTGTTCCGCAAATAAAAAGAATAGGTGTACAAAGAACCGGGGTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| 3UTR-3UTR CAA 90 bp | CTTTATTCGGAAATGTTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTTTAATCCTCATTATGTaGGCTTCCGTTTCCTTTTTC | + |
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Preference number: 3 (lower is better) Translates to: LYSEMFPSVITNLVSPPPLILIM*ASVSFF Trigger: GAAAAAGGAAACGGAAGCCAACATAATGAGGATTAA...AGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAACATTTCCGAATAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR GCA 90 bp | GTGGTGGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTTGGAGACACCAGGTCTaGTTGAGAAGGGAGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: VVEPLASASRDWIKASSSWRHQV*LRREGS Trigger: GGAGCCCTCCCTTCTCAAGCAGACCTGGTGTCTCCA...AGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCCACCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR TCA 90 bp | CTATTTAACCCAAGCCGGGAGAAAACGACTTCCCACCTCAGTGTCTTGTGCCATGAAGCCCCTCACAGGTaGGCTCTCGGCAAAGATGAA | + |
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Preference number: 4 (lower is better) Translates to: LFNPSREKTTSHLSVLCHEAPHR*ALGKDE Trigger: TTCATCTTTGCCGAGAGCTCACCTGTGAGGGGCTTC...ATGGCACAAGACACTGAGGTGGGAAGTCGTTTTCTCCCGGCTTGGGTTAAATAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| CDS-3UTR TCA 90 bp | GTGGTGGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTGAGGAGACTTGGCAATaGGAATCTGCCTTCTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: VVEPLASASRDWIKASSSEETWQ*ESAFSL Trigger: CAGAGAGAAGGCAGATTCTCATTGCCAAGTCTCCTC...AGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCCACCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR TCA 90 bp | TCACCTTCCGGGTCTGAAATCACTGTTACCACCTCAACAGCAACCAACCAATTAGGTCTTTCGTGGCCTTaGAGAACCAGGCCTTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: SPSGSEITVTTSTATNQLGLSWP*RTRPSP Trigger: GGGGGAAGGCCTGGTTCTTCAAGGCCACGAAAGACC...TAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR CCA 90 bp | GGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTTCACCGGACAAATCATCAGCTaGAGACACCAGGTCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: GAPSLCIQRLDKGFFIFTGQIIS*RHQVCL Trigger: CAAGCAGACCTGGTGTCTCCAGCTGATGATTTGTCC...GGTGAAGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR CCA 90 bp | GTGGTGGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTCAGCTACCAAACAGCTaGATCCAGAAGTGCCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: VVEPLASASRDWIKASSSQLPNS*IQKCLQ Trigger: CTGAAGGCACTTCTGGATCCAGCTGTTTGGTAGCTG...AGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCCACCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR TCA 90 bp | GGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTTCACCGGTCAAACTCCTTTCTaGCCACAGAAGCAATGGAGT | + |
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Preference number: 4 (lower is better) Translates to: GAPSLCIQRLDKGFFIFTGQTPF*PQKQWS Trigger: ACTCCATTGCTTCTGTGGTCAGAAAGGAGTTTGACC...GGTGAAGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR TCA 90 bp | CCTTCCGGGTCTGAAATCACTGTTACCACCTCAACAGCAACCAACCAATTAATCCCAGGCCTTCCCCCTTaGTGGTGTAGACAAAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: PSGSEITVTTSTATNQLIPGLPP*WCRQRR Trigger: CCTCCTTTGTCTACACCATCAAGGGGGAAGGCCTGG...GATTAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR GCA 90 bp | TCACCTTCCGGGTCTGAAATCACTGTTACCACCTCAACAGCAACCAACCAATTATGGAGACACCAGGTCTaGTTGAGAAGGGAGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: SPSGSEITVTTSTATNQLWRHQV*LRREGS Trigger: GGAGCCCTCCCTTCTCAAGCAGACCTGGTGTCTCCA...TAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR CCA 90 bp | GTGGTGGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTTTTTCCGCAACCTGGTaGACCTGTAATCTCTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: VVEPLASASRDWIKASSSFSATW*TCNLCE Trigger: CTCACAGAGATTACAGGTCCACCAGGTTGCGGAAAA...AGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCCACCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR CCA 90 bp | GGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTTCACCTCTGAATCAAGGTACTaGAGAATCAGCCGGGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: GAPSLCIQRLDKGFFIFTSESRY*RISRVF Trigger: GAACACCCGGCTGATTCTCCAGTACCTTGATTCAGA...GGTGAAGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR TCA 90 bp | CCTTCCGGGTCTGAAATCACTGTTACCACCTCAACAGCAACCAACCAATTAATCGAAGCCCCTCACAGGTaGGCTCTCGGCAAAGATGAA | + |
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Preference number: 4 (lower is better) Translates to: PSGSEITVTTSTATNQLIEAPHR*ALGKDE Trigger: TTCATCTTTGCCGAGAGCTCACCTGTGAGGGGCTTC...GATTAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR TCA 90 bp | TCACCTTCCGGGTCTGAAATCACTGTTACCACCTCAACAGCAACCAACCAATTACGGGTGTTCACACAGTaGCCCCATGTGTTTCCTAGT | + |
|
Preference number: 4 (lower is better) Translates to: SPSGSEITVTTSTATNQLRVFTQ*PHVFPS Trigger: ACTAGGAAACACATGGGGTCACTGTGTGAACACCCG...TAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR TCA 90 bp | GGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTTCACCAATCTGCCTTCTCTCTaGATCAAGGTACTGGAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: GAPSLCIQRLDKGFFIFTNLPSL*IKVLEN Trigger: ATTCTCCAGTACCTTGATTCAGAGAGAAGGCAGATT...GGTGAAGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR GCA 90 bp | GGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTTCACCTCTCTCAGCAGTAAATaGAGACTCTGTGTCGATGTA | + |
|
Preference number: 4 (lower is better) Translates to: GAPSLCIQRLDKGFFIFTSLSSK*RLCVDV Trigger: TACATCGACACAGAGTCTGCATTTACTGCTGAGAGA...GGTGAAGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CCA 90 bp | CTATTTAACCCAAGCCGGGAGAAAACGACTTCCCACCTCAGTGTCTTGTGCCATTTTTCCGCAACCTGGTaGACCTGTAATCTCTGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: LFNPSREKTTSHLSVLCHFSATW*TCNLCE Trigger: CTCACAGAGATTACAGGTCCACCAGGTTGCGGAAAA...ATGGCACAAGACACTGAGGTGGGAAGTCGTTTTCTCCCGGCTTGGGTTAAATAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| CDS-3UTR TCA 90 bp | CAATGCAAGGTTCCTGCCTCTTCCCACTGTGTGGATAAGCAGAAAGAAGCCAAAGGTCAAACTCCTTTCTaGCCACAGAAGCAATGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: QCKVPASSHCVDKQKEAKGQTPF*PQKQWS Trigger: ACTCCATTGCTTCTGTGGTCAGAAAGGAGTTTGACC...TTTGGCTTCTTTCTGCTTATCCACACAGTGGGAAGAGGCAGGAACCTTGCATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| CDS-3UTR GCA 90 bp | TTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTGCTCTCCCTAGGGGGGTAAGGACGCTCCTTTaGCCAAGAACTTGTTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: FPSVITNLVSPPPALPRGVRTLL*PRTCSF Trigger: AAAGGAACAAGTTCTTGGGCAAAGGAGCGTCCTTAC...CCCCCTAGGGAGAGCAGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAA 48% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CCA 90 bp | CTATTTAACCCAAGCCGGGAGAAAACGACTTCCCACCTCAGTGTCTTGTGCCATAGTTTTTCCGCAACCTaGTGGACCTGTAATCTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LFNPSREKTTSHLSVLCHSFSAT*WTCNLC Trigger: ACAGAGATTACAGGTCCACCAGGTTGCGGAAAAACT...ATGGCACAAGACACTGAGGTGGGAAGTCGTTTTCTCCCGGCTTGGGTTAAATAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| CDS-3UTR TCA 90 bp | ATACCAGTGGAACGTGAATTTATACTTACAATAGTCACAGCACTAATGACCTTCGGTCTTTCGTGGCCTTaGAGAACCAGGCCTTCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: IPVEREFILTIVTALMTFGLSWP*RTRPSP Trigger: GGGGGAAGGCCTGGTTCTTCAAGGCCACGAAAGACC...GAAGGTCATTAGTGCTGTGACTATTGTAAGTATAAATTCACGTTCCACTGGTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
||
| CDS-3UTR GCA 90 bp | TTAACCCAAGCCGGGAGAAAACGACTTCCCACCTCAGTGTCTTGTGCCATGCTGAGACACTCATCATTATaGAAAACTGAGTTTTTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: LTQAGRKRLPTSVSCAMLRHSSL*KTEFFR Trigger: GCGGAAAAACTCAGTTTTGCATAATGATGAGTGTCT...CAGCATGGCACAAGACACTGAGGTGGGAAGTCGTTTTCTCCCGGCTTGGGTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| CDS-3UTR CCA 90 bp | CCTTCCGGGTCTGAAATCACTGTTACCACCTCAACAGCAACCAACCAATTAATCTTTTCCGCAACCTGGTaGACCTGTAATCTCTGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: PSGSEITVTTSTATNQLIFSATW*TCNLCE Trigger: CTCACAGAGATTACAGGTCCACCAGGTTGCGGAAAA...GATTAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR TCA 90 bp | CAATGCAAGGTTCCTGCCTCTTCCCACTGTGTGGATAAGCAGAAAGAAGCCAAAACTTGTTCCTTTCTTTaGTGTTGCCTTGAAGCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: QCKVPASSHCVDKQKEAKTCSFL*CCLEAS Trigger: CGAAGCTTCAAGGCAACATCAAAGAAAGGAACAAGT...TTTGGCTTCTTTCTGCTTATCCACACAGTGGGAAGAGGCAGGAACCTTGCATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| CDS-3UTR TCA 90 bp | CAGTTACTCTTTGGAGACCCCGGTTCTTTGTACACCTATTCTTTTTATTTGCGGGAGGAGACTTGGCAATaGGAATCTGCCTTCTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: QLLFGDPGSLYTYSFYLREETWQ*ESAFSL Trigger: CAGAGAGAAGGCAGATTCTCATTGCCAAGTCTCCTC...CCGCAAATAAAAAGAATAGGTGTACAAAGAACCGGGGTCTCCAAAGAGTAACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
||
| CDS-3UTR GCA 90 bp | GGTTTCGATATTTCATTTGTGAATCAGTTACTCTTTGGAGACCCCGGTTCTTTGGCGGGGCACAGGCCTTaGTTACTGTATGAAGAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: GFDISFVNQLLFGDPGSLAGHRP*LLYEEA Trigger: AGCTTCTTCATACAGTAAGCAAGGCCTGTGCCCCGC...CAAAGAACCGGGGTCTCCAAAGAGTAACTGATTCACAAATGAAATATCGAAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
||
| CDS-3UTR GCA 90 bp | CTGTTTCATTTCATGAGTCACATGCAATCAGCACTAGACAAAGGTCACAGTATCGCGGGGCACAGGCCTTaGTTACTGTATGAAGAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LFHFMSHMQSALDKGHSIAGHRP*LLYEEA Trigger: AGCTTCTTCATACAGTAAGCAAGGCCTGTGCCCCGC...GATACTGTGACCTTTGTCTAGTGCTGATTGCATGTGACTCATGAAATGAAACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR GCA 90 bp | TCTTCACCTTCCGGGTCTGAAATCACTGTTACCACCTCAACAGCAACCAACCAATCTCTCAGCAGTAAATaGAGACTCTGTGTCGATGTA | + |
|
Preference number: 4 (lower is better) Translates to: SSPSGSEITVTTSTATNQSLSSK*RLCVDV Trigger: TACATCGACACAGAGTCTGCATTTACTGCTGAGAGA...TTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGGTGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR GCA 90 bp | GTGGTCAACTTGAAGATACTCTTTAAAAGCAATGCAAGGTTCCTGCCTCTTCCCGTAAGGACGCTCCTTTaGCCAAGAACTTGTTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: VVNLKILFKSNARFLPLPVRTLL*PRTCSF Trigger: AAAGGAACAAGTTCTTGGGCAAAGGAGCGTCCTTAC...GGGAAGAGGCAGGAACCTTGCATTGCTTTTAAAGAGTATCTTCAAGTTGACCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| CDS-3UTR CCA 90 bp | TCTTCACCTTCCGGGTCTGAAATCACTGTTACCACCTCAACAGCAACCAACCAAGATGAACTCTACTGCTaGTCAGAAGCAATTTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SSPSGSEITVTTSTATNQDELYC*SEAIFP Trigger: AGGAAAAATTGCTTCTGACCAGCAGTAGAGTTCATC...TTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGGTGAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CCA 90 bp | GTTACTCTTTGGAGACCCCGGTTCTTTGTACACCTATTCTTTTTATTTGCGGAACAGCTACCAAACAGCTaGATCCAGAAGTGCCTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: VTLWRPRFFVHLFFLFAEQLPNS*IQKCLQ Trigger: CTGAAGGCACTTCTGGATCCAGCTGTTTGGTAGCTG...TTCCGCAAATAAAAAGAATAGGTGTACAAAGAACCGGGGTCTCCAAAGAGTAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
||
| CDS-3UTR TCA 90 bp | GAAATGTTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTGCTCTCCCTAGATGGGTCGTAATTTaGTTCGTCAAGATAACTGGG | + |
|
Preference number: 4 (lower is better) Translates to: EMFPSVITNLVSPPPALPRWVVI*FVKITG Trigger: CCCAGTTATCTTGACGAATCAAATTACGACCCATCT...AGGGAGAGCAGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAACATTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR TCA 90 bp | ATACCAGTGGAACGTGAATTTATACTTACAATAGTCACAGCACTAATGACCTTCCGGGTGTTCACACAGTaGCCCCATGTGTTTCCTAGT | + |
|
Preference number: 4 (lower is better) Translates to: IPVEREFILTIVTALMTFRVFTQ*PHVFPS Trigger: ACTAGGAAACACATGGGGTCACTGTGTGAACACCCG...GAAGGTCATTAGTGCTGTGACTATTGTAAGTATAAATTCACGTTCCACTGGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
||
| CDS-3UTR GCA 90 bp | TTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTGCTCTCCCTAGGGGGAAAGATGAACTCTACTaGTGGTCAGAAGCAATTTTT | + |
|
Preference number: 4 (lower is better) Translates to: FPSVITNLVSPPPALPRGKDELY*WSEAIF Trigger: AAAAATTGCTTCTGACCAGCAGTAGAGTTCATCTTT...CCCCCTAGGGAGAGCAGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CCA 90 bp | GAAATCACTGTTACCACCTCAACAGCAACCAACCAATTAATCCTCATTATGTTGGGACAAATCATCAGCTaGAGACACCAGGTCTGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: EITVTTSTATNQLILIMLGQIIS*RHQVCL Trigger: CAAGCAGACCTGGTGTCTCCAGCTGATGATTTGTCC...CAACATAATGAGGATTAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR GCA 90 bp | TGGTCAAATATAGTGGTCAACTTGAAGATACTCTTTAAAAGCAATGCAAGGTTCGCGGGGCACAGGCCTTaGTTACTGTATGAAGAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: WSNIVVNLKILFKSNARFAGHRP*LLYEEA Trigger: AGCTTCTTCATACAGTAAGCAAGGCCTGTGCCCCGC...GAACCTTGCATTGCTTTTAAAGAGTATCTTCAAGTTGACCACTATATTTGACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| CDS-3UTR CCA 90 bp | CTGTTTCATTTCATGAGTCACATGCAATCAGCACTAGACAAAGGTCACAGTATCAGTTTTTCCGCAACCTaGTGGACCTGTAATCTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LFHFMSHMQSALDKGHSISFSAT*WTCNLC Trigger: ACAGAGATTACAGGTCCACCAGGTTGCGGAAAAACT...GATACTGTGACCTTTGTCTAGTGCTGATTGCATGTGACTCATGAAATGAAACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CCA 90 bp | GTGGTCAACTTGAAGATACTCTTTAAAAGCAATGCAAGGTTCCTGCCTCTTCCCGATGAACTCTACTGCTaGTCAGAAGCAATTTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: VVNLKILFKSNARFLPLPDELYC*SEAIFP Trigger: AGGAAAAATTGCTTCTGACCAGCAGTAGAGTTCATC...GGGAAGAGGCAGGAACCTTGCATTGCTTTTAAAGAGTATCTTCAAGTTGACCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
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| CDS-3UTR TCA 90 bp | GAAATCACTGTTACCACCTCAACAGCAACCAACCAATTAATCCTCATTATGTTGAGATGGGTCGTAATTTaGTTCGTCAAGATAACTGGG | + |
|
Preference number: 4 (lower is better) Translates to: EITVTTSTATNQLILIMLRWVVI*FVKITG Trigger: CCCAGTTATCTTGACGAATCAAATTACGACCCATCT...CAACATAATGAGGATTAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR TCA 90 bp | CTTTATTCGGAAATGTTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTAATCTGCCTTCTCTCTaGATCAAGGTACTGGAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: LYSEMFPSVITNLVSPPPNLPSL*IKVLEN Trigger: ATTCTCCAGTACCTTGATTCAGAGAGAAGGCAGATT...AGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAACATTTCCGAATAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR GCA 90 bp | ATACCAGTGGAACGTGAATTTATACTTACAATAGTCACAGCACTAATGACCTTCGTAAGGACGCTCCTTTaGCCAAGAACTTGTTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: IPVEREFILTIVTALMTFVRTLL*PRTCSF Trigger: AAAGGAACAAGTTCTTGGGCAAAGGAGCGTCCTTAC...GAAGGTCATTAGTGCTGTGACTATTGTAAGTATAAATTCACGTTCCACTGGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
||
| CDS-3UTR GCA 90 bp | CTTTATTCGGAAATGTTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTTTGGCAATGAGAATCTaGCTTCTCTCTGAATCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: LYSEMFPSVITNLVSPPPLAMRI*LLSESR Trigger: CCTTGATTCAGAGAGAAGGCAGATTCTCATTGCCAA...AGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAACATTTCCGAATAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR GCA 90 bp | GAAATCACTGTTACCACCTCAACAGCAACCAACCAATTAATCCTCATTATGTTGTTGGCAATGAGAATCTaGCTTCTCTCTGAATCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: EITVTTSTATNQLILIMLLAMRI*LLSESR Trigger: CCTTGATTCAGAGAGAAGGCAGATTCTCATTGCCAA...CAACATAATGAGGATTAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CCA 90 bp | CTGTTTCATTTCATGAGTCACATGCAATCAGCACTAGACAAAGGTCACAGTATCGATGAACTCTACTGCTaGTCAGAAGCAATTTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LFHFMSHMQSALDKGHSIDELYC*SEAIFP Trigger: AGGAAAAATTGCTTCTGACCAGCAGTAGAGTTCATC...GATACTGTGACCTTTGTCTAGTGCTGATTGCATGTGACTCATGAAATGAAACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| 3UTR CAA 72 bp | GGAGACCCCGGTTCTTTGTACACCTATTCTTTTTATTaGCGGAACAATACTTTATTCGGAAATGTTCCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: GDPGSLYTYSFY*RNNTLFGNVPF Trigger: GAAGGGAACATTTCCGAATAAAGTATTGTTCCGCAAATAAAAAGAATAGGTGTACAAAGAACCGGGGTCTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
||
| CDS-3UTR GCA 90 bp | TGGTCAAATATAGTGGTCAACTTGAAGATACTCTTTAAAAGCAATGCAAGGTTCTCTCTCAGCAGTAAATaGAGACTCTGTGTCGATGTA | + |
|
Preference number: 4 (lower is better) Translates to: WSNIVVNLKILFKSNARFSLSSK*RLCVDV Trigger: TACATCGACACAGAGTCTGCATTTACTGCTGAGAGA...GAACCTTGCATTGCTTTTAAAGAGTATCTTCAAGTTGACCACTATATTTGACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| 3UTR CAA 72 bp | TTTGTGAATCAGTTACTCTTTGGAGACCCCGGTTCTTaGTACACCTATTCTTTTTATTTGCGGAACAATACT | + |
|
Preference number: 4 (lower is better) Translates to: FVNQLLFGDPGS*YTYSFYLRNNT Trigger: AGTATTGTTCCGCAAATAAAAAGAATAGGTGTACAAAGAACCGGGGTCTCCAAAGAGTAACTGATTCACAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
||
| CDS-3UTR GCA 90 bp | ATACCAGTGGAACGTGAATTTATACTTACAATAGTCACAGCACTAATGACCTTCAGACACTCATCATTATaGAAAACTGAGTTTTTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: IPVEREFILTIVTALMTFRHSSL*KTEFFR Trigger: GCGGAAAAACTCAGTTTTGCATAATGATGAGTGTCT...GAAGGTCATTAGTGCTGTGACTATTGTAAGTATAAATTCACGTTCCACTGGTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
||
| CDS-3UTR GCA 90 bp | ATCATAGTGTCAATCCAGACTTGTAGCTTTAACTTAGGGAATGGAGTTCATGACAAAGATGAACTCTACTaGTGGTCAGAAGCAATTTTT | + |
|
Preference number: 4 (lower is better) Translates to: IIVSIQTCSFNLGNGVHDKDELY*WSEAIF Trigger: AAAAATTGCTTCTGACCAGCAGTAGAGTTCATCTTT...GTCATGAACTCCATTCCCTAAGTTAAAGCTACAAGTCTGGATTGACACTATGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| CDS-3UTR GCA 90 bp | GAAATCACTGTTACCACCTCAACAGCAACCAACCAATTAATCCTCATTATGTTGAAAGATGAACTCTACTaGTGGTCAGAAGCAATTTTT | + |
|
Preference number: 4 (lower is better) Translates to: EITVTTSTATNQLILIMLKDELY*WSEAIF Trigger: AAAAATTGCTTCTGACCAGCAGTAGAGTTCATCTTT...CAACATAATGAGGATTAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CAA 90 bp | GTGGTGGAGCCCCTAGCCTCTGCATCCAGAGACTGGATAAAGGCTTCTTCATCTGCAGCCAGAGGAGACTaGGCAATGAGAATCTGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: VVEPLASASRDWIKASSSAARGD*AMRICL Trigger: AAGGCAGATTCTCATTGCCAAGTCTCCTCTGGCTGC...AGATGAAGAAGCCTTTATCCAGTCTCTGGATGCAGAGGCTAGGGGCTCCACCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS TCA 90 bp | CTCTCTGAATCAAGGTACTGGAGAATCAGCCGGGTGTTCACACAGTaGCCCCATGTGTTTCCTAGTGCAGCTACCAAACAGCTGGATCCA | + |
|
Preference number: 5 (lower is better) Translates to: LSESRYWRISRVFTQ*PHVFPSAATKQLDP Trigger: TGGATCCAGCTGTTTGGTAGCTGCACTAGGAAACACATGGGGTCACTGTGTGAACACCCGGCTGATTCTCCAGTACCTTGATTCAGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS GCA 90 bp | GTGTCTTTAACTCATAAGCCGTTTGCATCTGCGGGGCACAGGCCTTaGTTACTGTATGAAGAAGCTCGTGGACACCTCTGTAACTCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: VSLTHKPFASAGHRP*LLYEEARGHLCNSG Trigger: GCCTGAGTTACAGAGGTGTCCACGAGCTTCTTCATACAGTAAGCAAGGCCTGTGCCCCGCAGATGCAAACGGCTTATGAGTTAAAGACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CAA 90 bp | TTAACCCAAGCCGGGAGAAAACGACTTCCCACCTCAGTGTCTTGTGCCATGCTGTTCTTTGATGTTGCCTaGAAGCTTCGGGTCAAACTC | + |
|
Preference number: 5 (lower is better) Translates to: LTQAGRKRLPTSVSCAMLFFDVA*KLRVKL Trigger: GAGTTTGACCCGAAGCTTCAAGGCAACATCAAAGAA...CAGCATGGCACAAGACACTGAGGTGGGAAGTCGTTTTCTCCCGGCTTGGGTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079533.12 |
||
| CDS TCA 90 bp | TCTCTTCCTCCAAAGACTCAAGCCTTTGTAGAAGCCCCTCACAGGTaGGCTCTCGGCAAAGATGAACTCTACTGCTGGTCAGAAGCAATT | + |
|
Preference number: 5 (lower is better) Translates to: SLPPKTQAFVEAPHR*ALGKDELYCWSEAI Trigger: AATTGCTTCTGACCAGCAGTAGAGTTCATCTTTGCCGAGAGCTCACCTGTGAGGGGCTTCTACAAAGGCTTGAGTCTTTGGAGGAAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS TCA 90 bp | GACGCTCCTTTGCCCAAGAACTTGTTCCTTTCTTTGATGTTGCCTTaGAGCTTCGGGTCAAACTCCTTTCTGACCACAGAAGCAATGGAG | + |
|
Preference number: 5 (lower is better) Translates to: DAPLPKNLFLSLMLP*SFGSNSFLTTEAME Trigger: CTCCATTGCTTCTGTGGTCAGAAAGGAGTTTGACCCGAAGCTTCAAGGCAACATCAAAGAAAGGAACAAGTTCTTGGGCAAAGGAGCGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CAA 90 bp | TTCCCTTCTGTAATTACAAATCTTGTTAGTCCCCCTCCTGCTCTCCCTAGGGGGCAGATGGGTCGTAATTaGATTCGTCAAGATAACTGG | + |
|
Preference number: 5 (lower is better) Translates to: FPSVITNLVSPPPALPRGQMGRN*IRQDNW Trigger: CCAGTTATCTTGACGAATCAAATTACGACCCATCTG...CCCCCTAGGGAGAGCAGGAGGGGGACTAACAAGATTTGTAATTACAGAAGGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
||
| CDS-3UTR CAA 90 bp | CAGTTACTCTTTGGAGACCCCGGTTCTTTGTACACCTATTCTTTTTATTTGCGGGCAGCCAGAGGAGACTaGGCAATGAGAATCTGCCTT | + |
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Preference number: 5 (lower is better) Translates to: QLLFGDPGSLYTYSFYLRAARGD*AMRICL Trigger: AAGGCAGATTCTCATTGCCAAGTCTCCTCTGGCTGC...CCGCAAATAAAAAGAATAGGTGTACAAAGAACCGGGGTCTCCAAAGAGTAACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| CDS-3UTR CAA 90 bp | TCACCTTCCGGGTCTGAAATCACTGTTACCACCTCAACAGCAACCAACCAATTATTCTTTGATGTTGCCTaGAAGCTTCGGGTCAAACTC | + |
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Preference number: 5 (lower is better) Translates to: SPSGSEITVTTSTATNQLFFDVA*KLRVKL Trigger: GAGTTTGACCCGAAGCTTCAAGGCAACATCAAAGAA...TAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTCAGACCCGGAAGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS TCA 90 bp | AGGCTGGTAGGTAATGTAGCTAAGACACTCATCATTATGCAAAACTaGGTTTTTCCGCAACCTGGTGGACCTGTAATCTCTGTGAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: RLVGNVAKTLIIMQN*VFPQPGGPVISVRD Trigger: ATCTCTCACAGAGATTACAGGTCCACCAGGTTGCGGAAAAACTCAGTTTTGCATAATGATGAGTGTCTTAGCTACATTACCTACCAGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS TCA 90 bp | CCAGTCACTTTCATAAGTTCTAGTGGGGAGAGACTTAAAAAGTGCTaGCAGTTAACAATCTGGTATCTGCTTAAACGGTCACACAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: PVTFISSSGERLKKC*QLTIWYLLKRSHSS Trigger: AGAGCTGTGTGACCGTTTAAGCAGATACCAGATTGTTAACTGTCAGCACTTTTTAAGTCTCTCCCCACTAGAACTTATGAAAGTGACTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS-3UTR CAA 90 bp | ATACCAGTGGAACGTGAATTTATACTTACAATAGTCACAGCACTAATGACCTTCTTCTTTGATGTTGCCTaGAAGCTTCGGGTCAAACTC | + |
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Preference number: 5 (lower is better) Translates to: IPVEREFILTIVTALMTFFFDVA*KLRVKL Trigger: GAGTTTGACCCGAAGCTTCAAGGCAACATCAAAGAA...GAAGGTCATTAGTGCTGTGACTATTGTAAGTATAAATTCACGTTCCACTGGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171210.3 |
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| CDS-3UTR CAA 90 bp | GAAATCACTGTTACCACCTCAACAGCAACCAACCAATTAATCCTCATTATGTTGCAGATGGGTCGTAATTaGATTCGTCAAGATAACTGG | + |
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Preference number: 5 (lower is better) Translates to: EITVTTSTATNQLILIMLQMGRN*IRQDNW Trigger: CCAGTTATCTTGACGAATCAAATTACGACCCATCTG...CAACATAATGAGGATTAATTGGTTGGTTGCTGTTGAGGTGGTAACAGTGATTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS GCA 72 bp | ACTCATAAGCCGTTTGCATCTGCGGGGCACAGGCCTTaGTTACTGTATGAAGAAGCTCGTGGACACCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: THKPFASAGHRP*LLYEEARGHLC Trigger: ACAGAGGTGTCCACGAGCTTCTTCATACAGTAAGCAAGGCCTGTGCCCCGCAGATGCAAACGGCTTATGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS TCA 72 bp | CCAAAGACTCAAGCCTTTGTAGAAGCCCCTCACAGGTaGGCTCTCGGCAAAGATGAACTCTACTGCTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: PKTQAFVEAPHR*ALGKDELYCWS Trigger: TGACCAGCAGTAGAGTTCATCTTTGCCGAGAGCTCACCTGTGAGGGGCTTCTACAAAGGCTTGAGTCTTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS TCA 72 bp | TCAAGGTACTGGAGAATCAGCCGGGTGTTCACACAGTaGCCCCATGTGTTTCCTAGTGCAGCTACCAAACAG | + |
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Preference number: 6 (lower is better) Translates to: SRYWRISRVFTQ*PHVFPSAATKQ Trigger: CTGTTTGGTAGCTGCACTAGGAAACACATGGGGTCACTGTGTGAACACCCGGCTGATTCTCCAGTACCTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS GCA 72 bp | AGATTCCGCAATCTCAACCAGTCTCTCAGCAGTAAATaGAGACTCTGTGTCGATGTAGACCACAGCCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: RFRNLNQSLSSK*RLCVDVDHSPF Trigger: GAAGGGGCTGTGGTCTACATCGACACAGAGTCTGCATTTACTGCTGAGAGACTGGTTGAGATTGCGGAATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS CAA 72 bp | AACTCCCCTGCCAGGTACTTCAGTAAGGACGCTCCTTaGCCCAAGAACTTGTTCCTTTCTTTGATGTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: NSPARYFSKDAP*PKNLFLSLMLP Trigger: AGGCAACATCAAAGAAAGGAACAAGTTCTTGGGCAAAGGAGCGTCCTTACTGAAGTACCTGGCAGGGGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS TCA 72 bp | AGGACGCTCCTTTGCCCAAGAACTTGTTCCTTTCTTTaGTGTTGCCTTGAAGCTTCGGGTCAAACTCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: RTLLCPRTCSFL*CCLEASGQTPF Trigger: GAAAGGAGTTTGACCCGAAGCTTCAAGGCAACATCAAAGAAAGGAACAAGTTCTTGGGCAAAGGAGCGTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS CCA 72 bp | CATCATTATGCAAAACTGAGTTTTTCCGCAACCTGGTaGACCTGTAATCTCTGTGAGAGATCCACAAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: HHYAKLSFSATW*TCNLCERSTRH Trigger: GTGCCTTGTGGATCTCTCACAGAGATTACAGGTCCACCAGGTTGCGGAAAAACTCAGTTTTGCATAATGATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS CCA 72 bp | ACTCATCATTATGCAAAACTGAGTTTTTCCGCAACCTaGTGGACCTGTAATCTCTGTGAGAGATCCACAAGG | + |
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Preference number: 6 (lower is better) Translates to: THHYAKLSFSAT*WTCNLCERSTR Trigger: CCTTGTGGATCTCTCACAGAGATTACAGGTCCACCAGGTTGCGGAAAAACTCAGTTTTGCATAATGATGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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| CDS TCA 72 bp | TTCATAAGTTCTAGTGGGGAGAGACTTAAAAAGTGCTaGCAGTTAACAATCTGGTATCTGCTTAAACGGTCA | + |
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Preference number: 6 (lower is better) Translates to: FISSSGERLKKC*QLTIWYLLKRS Trigger: TGACCGTTTAAGCAGATACCAGATTGTTAACTGTCAGCACTTTTTAAGTCTCTCCCCACTAGAACTTATGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000079533.12 ENSMUST00000171210.3 ENSMUST00000218039.3 |
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