Pregenerated sensors for RAD51AP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000086022Ensembl transcript IDs: ENSMUST00000124065.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTACTGCTTCCCACCGGCTaGGCTCCCCGGGCTCTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: KSAAGGKHLYKATSKSFLLLPTG*APRALW Trigger: CCAAAGAGCCCGGGGAGCTCAGCCGGTGGGAAGCAG...TAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | AAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTACCAAGGCGCACCCCCTaGACCTCCCTGTCCTGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: KSAAGGKHLYKATSKSFLPRRTP*TSLSCS Trigger: ACTGCAGGACAGGGAGGTTCAGGGGGTGCGCCTTGG...TAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACCAGCCTAGCTCTTCTTaGCAAGCCAACCCTAATTGG | + |
|
Preference number: 4 (lower is better) Translates to: SAAGGKHLYKATSKSFLDQPSSS*QANPNW Trigger: CCAATTAGGGTTGGCTTGTCAAGAAGAGCTAGGCTG...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR GCA 90 bp | AAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACTGCCAACAGCTGTaGGCCTGGAATGTTCTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: KSAAGGKHLYKATSKSFLDCQQL*AWNVLS Trigger: GGACAGAACATTCCAGGCGCACAGCTGTTGGCAGTC...TAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | ACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATCTTCAGGCTCCTGTTTaGCTCCTTGGACATAGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TQNLQLEENTYTKQQVNHLQAPV*LLGHRA Trigger: TGCCCTATGTCCAAGGAGTCAAACAGGAGCCTGAAG...ATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CCA 90 bp | ACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATCATGGGGCTATTGGGTaGAGCATGACTCACTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: TQNLQLEENTYTKQQVNHHGAIG*SMTHFC Trigger: GCAGAAGTGAGTCATGCTCCACCCAATAGCCCCATG...ATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | ACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATCTATTGGGTGGAGCATaGCTCACTTCTGCTTGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: TQNLQLEENTYTKQQVNHLLGGA*LTSAWS Trigger: TGACCAAGCAGAAGTGAGTCATGCTCCACCCAATAG...ATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACGCCTTTTATGTTTGTTaGGACCTGCCTTCACATCAC | + |
|
Preference number: 4 (lower is better) Translates to: SAAGGKHLYKATSKSFLDAFYVC*DLPSHH Trigger: GTGATGTGAAGGCAGGTCTCAACAAACATAAAAGGC...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR GCA 90 bp | ACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATACACTCATTGGGAACTaGCTGTCCTCCATGAGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: TQNLQLEENTYTKQQVNHTLIGN*LSSMSR Trigger: CCTACTCATGGAGGACAGGCAGTTCCCAATGAGTGT...ATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CCA 90 bp | ACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTTGGCCAACACTCATTaGGAACTGCCTGTCCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: TQNLQLEENTYTKQQVNHLANTH*ELPVLH Trigger: ATGGAGGACAGGCAGTTCCCAATGAGTGTTGGCCAA...ATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CCA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACGCATTCGGTCTATTTTaGGACGAGAAAATGTTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: SAAGGKHLYKATSKSFLDAFGLF*DEKMFV Trigger: CACAAACATTTTCTCGTCCCAAAATAGACCGAATGC...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CCA 90 bp | AAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTACAAGCCAACCCTAATTaGACGACTGCATGTCTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: KSAAGGKHLYKATSKSFLQANPN*TTACLK Trigger: CTTAAGACATGCAGTCGTCCAATTAGGGTTGGCTTG...TAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACGGCTTGAAAACTACTTaGACTTTTTGTGACCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SAAGGKHLYKATSKSFLDGLKTT*TFCDLH Trigger: ATGAAGGTCACAAAAAGTTCAAGTAGTTTTCAAGCC...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | AAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAATCCCATGCGAAAAATaGCTGCCTCCCTTCAATAAA | + |
|
Preference number: 4 (lower is better) Translates to: KSAAGGKHLYKATSKSFLIPCEK*LPPFNK Trigger: TTTATTGAAGGGAGGCAGTCATTTTTCGCATGGGAT...TAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR GCA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACCATGCGAAAAATGACTaGCTCCCTTCAATAAAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: SAAGGKHLYKATSKSFLDHAKND*LPSIKF Trigger: AAACTTTATTGAAGGGAGGCAGTCATTTTTCGCATG...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CCA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACCTGTGTGATGTATTTTaGCTTAACAATGTGCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: SAAGGKHLYKATSKSFLDLCDVF*LNNVHS Trigger: ACTGTGCACATTGTTAAGCCAAAATACATCACACAG...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | ACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCACAGTCCAAGTTTTaGAATTCTTGTCTGGTAGGT | + |
|
Preference number: 4 (lower is better) Translates to: TQNLQLEENTYTKQQVNHSQSKF*NSCLVG Trigger: ACCTACCAGACAAGAATTTCAAAACTTGGACTGTGA...ATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | AACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCAAATGCATCCCTCTTCTaGTTCCCTATCATCTTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: NTKSAAGGKHLYKATSKSNASLF*FPIIFL Trigger: AAGAAAGATGATAGGGAATCAGAAGAGGGATGCATT...TGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | AACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCAATTGTTCTCCCCACTTaGGTCACTTTCAAATTGATG | + |
|
Preference number: 4 (lower is better) Translates to: NTKSAAGGKHLYKATSKSIVLPT*VTFKLM Trigger: CATCAATTTGAAAGTGACTCAAGTGGGGAGAACAAT...TGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR TCA 90 bp | ACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATGTAGCAGTTAAACCCTaGAAACATTCATTGTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: TQNLQLEENTYTKQQVNHVAVKP*KHSLFS Trigger: GGAGAACAATGAATGTTTTCAGGGTTTAACTGCTAC...ATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR GCA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACAGACAAAGGACATGTTaGTATTTAAATCCCTTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SAAGGKHLYKATSKSFLDRQRTC*YLNPLE Trigger: TTCCAAGGGATTTAAATAGCAACATGTCCTTTGTCT...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR GCA 90 bp | AACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCACAGACTCCACATGTGTaGCATCAATACCAAAACTAT | + |
|
Preference number: 4 (lower is better) Translates to: NTKSAAGGKHLYKATSKSQTPHV*HQYQNY Trigger: ATAGTTTTGGTATTGATGGCACACATGTGGAGTCTG...TGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR GCA 90 bp | AAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGCTAACTCACTTTCTTaGAAAATACCTCCATCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: KSAAGGKHLYKATSKSFLANSLS*KIPPSS Trigger: AGAGGATGGAGGTATTTTGCAAGAAAGTGAGTTAGC...TAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR GCA 90 bp | AACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCACATCTCAAACTCTTCTaGTATTGGCAGAGTTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: NTKSAAGGKHLYKATSKSHLKLF*YWQSFC Trigger: ACAGAAACTCTGCCAATAGCAGAAGAGTTTGAGATG...TGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR GCA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACTCCTATCTCCATTCTTaGCTCTTTAACATCATTACT | + |
|
Preference number: 4 (lower is better) Translates to: SAAGGKHLYKATSKSFLDSYLHS*LFNIIT Trigger: AGTAATGATGTTAAAGAGGCAAGAATGGAGATAGGA...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CCA 90 bp | AACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCAGCCATAGCATTAATCTaGTCACTGTGTGATGTATTT | + |
|
Preference number: 4 (lower is better) Translates to: NTKSAAGGKHLYKATSKSAIALI*SLCDVF Trigger: AAATACATCACACAGTGACCAGATTAATGCTATGGC...TGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS GCA 90 bp | CCTCAGAGACTCCGCCGTCAGGCTCCTTCAGACGCCGCCGCTTGCTaGTGGGGGACGCCGCAGCGGGGTCCTCAGGAGGCGGTTCTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: PQRLRRQAPSDAAAC*WGTPQRGPQEAVLR Trigger: CCTCAGAACCGCCTCCTGAGGACCCCGCTGCGGCGTCCCCCAGCAGCAAGCGGCGGCGTCTGAAGGAGCCTGACGGCGGAGTCTCTGAGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CCA 90 bp | CAGAGACTCCGCCGTCAGGCTCCTTCAGACGCCGCCGCTTGCTGCTaGGGGACGCCGCAGCGGGGTCCTCAGGAGGCGGTTCTGAGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: QRLRRQAPSDAAACC*GTPQRGPQEAVLRR Trigger: TCTCCTCAGAACCGCCTCCTGAGGACCCCGCTGCGGCGTCCCCCAGCAGCAAGCGGCGGCGTCTGAAGGAGCCTGACGGCGGAGTCTCTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS GCA 90 bp | TTGGACATAGGGCATGGGGCTATTGGGTGGAGCATGACTCACTTCTaGTTGGTCACCAAGGCGCACCCCCTGAACCTCCCTGTCCTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: LDIGHGAIGWSMTHF*LVTKAHPLNLPVLQ Trigger: CTGCAGGACAGGGAGGTTCAGGGGGTGCGCCTTGGTGACCAAGCAGAAGTGAGTCATGCTCCACCCAATAGCCCCATGCCCTATGTCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CCA 90 bp | AGGCTCCTGTTTGACTCCTTGGACATAGGGCATGGGGCTATTGGGTaGAGCATGACTCACTTCTGCTTGGTCACCAAGGCGCACCCCCTG | + |
|
Preference number: 5 (lower is better) Translates to: RLLFDSLDIGHGAIG*SMTHFCLVTKAHPL Trigger: CAGGGGGTGCGCCTTGGTGACCAAGCAGAAGTGAGTCATGCTCCACCCAATAGCCCCATGCCCTATGTCCAAGGAGTCAAACAGGAGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CAA 90 bp | AAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAATGACTCACTTCTGCTaGGTCACCAAGGCGCACCCC | + |
|
Preference number: 5 (lower is better) Translates to: KSAAGGKHLYKATSKSFLMTHFC*VTKAHP Trigger: GGGGTGCGCCTTGGTGACCAAGCAGAAGTGAGTCAT...TAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS TCA 90 bp | TCCTCTGATCTTGGCCAACACTCATTGGGAACTGCCTGTCCTCCATaGGTAGGTAGCATTTTCCAGTTAAATAAACTTTGGTGCCTTTTA | + |
|
Preference number: 5 (lower is better) Translates to: SSDLGQHSLGTACPP*VGSIFQLNKLWCLL Trigger: TAAAAGGCACCAAAGTTTATTTAACTGGAAAATGCTACCTACTCATGGAGGACAGGCAGTTCCCAATGAGTGTTGGCCAAGATCAGAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS GCA 90 bp | TTAGTTTCTTCCATATTTATGCTCTTACTCACTAGCGAAGCTGACTaGACTGAAGACATTCCGTCCATTGTGGGAAAACTATCCTCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: LVSSIFMLLLTSEAD*TEDIPSIVGKLSSS Trigger: GGAAGAGGATAGTTTTCCCACAATGGACGGAATGTCTTCAGTGCAGTCAGCTTCGCTAGTGAGTAAGAGCATAAATATGGAAGAAACTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CAA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACTGCCTTTTATGTTTGTaGAGACCTGCCTTCACATCA | + |
|
Preference number: 5 (lower is better) Translates to: SAAGGKHLYKATSKSFLDCLLCL*RPAFTS Trigger: TGATGTGAAGGCAGGTCTCAACAAACATAAAAGGCA...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CAA 90 bp | AACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATGGTGCCTTTTATGTTaGTTGAGACCTGCCTTCACA | + |
|
Preference number: 5 (lower is better) Translates to: NTKSAAGGKHLYKATSKSWCLLC*LRPAFT Trigger: TGTGAAGGCAGGTCTCAACAAACATAAAAGGCACCA...TGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS TCA 90 bp | GGAAAACTATCCTCTTCCTTCTCAGTGTCAATAGCGTTATGGGCTTaGAAACTACTTGAACTTTTTGTGACCTTCATTTCTCTCTTCAAA | + |
|
Preference number: 5 (lower is better) Translates to: GKLSSSFSVSIALWA*KLLELFVTFISLFK Trigger: TTTGAAGAGAGAAATGAAGGTCACAAAAAGTTCAAGTAGTTTTCAAGCCCATAACGCTATTGACACTGAGAAGGAAGAGGATAGTTTTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CAA 90 bp | ACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATAAGACATTCCGTCCATaGTGGGAAAACTATCCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: TQNLQLEENTYTKQQVNHKTFRP*WENYPL Trigger: AAGAGGATAGTTTTCCCACAATGGACGGAATGTCTT...ATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CAA 90 bp | TCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGACTTGTCATCCTGGTACTaGGAATTTCATTTTCCTTAC | + |
|
Preference number: 5 (lower is better) Translates to: SAAGGKHLYKATSKSFLDLSSWY*EFHFPY Trigger: GTAAGGAAAATGAAATTCCAAGTACCAGGATGACAA...GTCTAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CAA 90 bp | AAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATTCCTAGGTGCATTTCTTGTGTaGGTTTCAACCATTTCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: KSAAGGKHLYKATSKSFLGAFLV*VSTISS Trigger: ACTGGAAATGGTTGAAACCAACACAAGAAATGCACC...TAGGAATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CCA 90 bp | AGAGTTATCGCCATAGCATTAATCTGGTCACTGTGTGATGTATTTTaGCTTAACAATGTGCACAGTTGTCTAACATTAAAGACATCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: RVIAIALIWSLCDVF*LNNVHSCLTLKTSS Trigger: TGAAGATGTCTTTAATGTTAGACAACTGTGCACATTGTTAAGCCAAAATACATCACACAGTGACCAGATTAATGCTATGGCGATAACTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CAA 90 bp | AACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCAAGGTATGTAATACTCTaGATTCCTTTCTGTTCCCTC | + |
|
Preference number: 5 (lower is better) Translates to: NTKSAAGGKHLYKATSKSRYVIL*IPFCSL Trigger: GAGGGAACAGAAAGGAATCAAGAGTATTACATACCT...TGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS-3UTR CAA 90 bp | ACACAAAATCTGCAGCTGGAGGAAAACACTTATACAAAGCAACAAGTAAATCATCATTGTTCTCCCCACTaGAGTCACTTTCAAATTGAT | + |
|
Preference number: 5 (lower is better) Translates to: TQNLQLEENTYTKQQVNHHCSPH*SHFQID Trigger: ATCAATTTGAAAGTGACTCAAGTGGGGAGAACAATG...ATGATTTACTTGTTGCTTTGTATAAGTGTTTTCCTCCAGCTGCAGATTTTGTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS TCA 72 bp | GGGGGACGCCGCAGCGGGGTCCTCAGGAGGCGGTTCTaGGGAGACAGGCCAGGCAGGCCCTGCAGGCCACGC | + |
|
Preference number: 6 (lower is better) Translates to: GGRRSGVLRRRF*GDRPGRPCRPR Trigger: GCGTGGCCTGCAGGGCCTGCCTGGCCTGTCTCCTCAGAACCGCCTCCTGAGGACCCCGCTGCGGCGTCCCCC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS GCA 72 bp | CTCCGCCGTCAGGCTCCTTCAGACGCCGCCGCTTGCTaGTGGGGGACGCCGCAGCGGGGTCCTCAGGAGGCG | + |
|
Preference number: 6 (lower is better) Translates to: LRRQAPSDAAAC*WGTPQRGPQEA Trigger: CGCCTCCTGAGGACCCCGCTGCGGCGTCCCCCAGCAGCAAGCGGCGGCGTCTGAAGGAGCCTGACGGCGGAG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CAA 90 bp | CCCGCCTCAGAGACTCCGCCGTCAGGCTCCTTCAGACGCCGCCGCTaGCTGCTGGGGGACGCCGCAGCGGGGTCCTCAGGAGGCGGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: PASETPPSGSFRRRR*LLGDAAAGSSGGGS Trigger: AGAACCGCCTCCTGAGGACCCCGCTGCGGCGTCCCCCAGCAGCAAGCGGCGGCGTCTGAAGGAGCCTGACGGCGGAGTCTCTGAGGCGGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CAA 72 bp | GAGACTCCGCCGTCAGGCTCCTTCAGACGCCGCCGCTaGCTGCTGGGGGACGCCGCAGCGGGGTCCTCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: ETPPSGSFRRRR*LLGDAAAGSSG Trigger: TCCTGAGGACCCCGCTGCGGCGTCCCCCAGCAGCAAGCGGCGGCGTCTGAAGGAGCCTGACGGCGGAGTCTC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS TCA 72 bp | CCGACATCCCAGGTCACACGACTGCTTCCCACCGGCTaGGCTCCCCGGGCTCTTTGGAATGAGGAACGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: PTSQVTRLLPTG*APRALWNEERC Trigger: ACAGCGTTCCTCATTCCAAAGAGCCCGGGGAGCTCAGCCGGTGGGAAGCAGTCGTGTGACCTGGGATGTCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CAA 90 bp | GACATAGGGCATGGGGCTATTGGGTGGAGCATGACTCACTTCTGCTaGGTCACCAAGGCGCACCCCCTGAACCTCCCTGTCCTGCAGTCC | + |
|
Preference number: 6 (lower is better) Translates to: DIGHGAIGWSMTHFC*VTKAHPLNLPVLQS Trigger: GGACTGCAGGACAGGGAGGTTCAGGGGGTGCGCCTTGGTGACCAAGCAGAAGTGAGTCATGCTCCACCCAATAGCCCCATGCCCTATGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CAA 72 bp | CATGGGGCTATTGGGTGGAGCATGACTCACTTCTGCTaGGTCACCAAGGCGCACCCCCTGAACCTCCCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: HGAIGWSMTHFC*VTKAHPLNLPV Trigger: GACAGGGAGGTTCAGGGGGTGCGCCTTGGTGACCAAGCAGAAGTGAGTCATGCTCCACCCAATAGCCCCATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CAA 72 bp | CTTCTCAGGAAGTTCTTCAGGCTCCTGTTTGACTCCTaGGACATAGGGCATGGGGCTATTGGGTGGAGCATG | + |
|
Preference number: 6 (lower is better) Translates to: LLRKFFRLLFDS*DIGHGAIGWSM Trigger: CATGCTCCACCCAATAGCCCCATGCCCTATGTCCAAGGAGTCAAACAGGAGCCTGAAGAACTTCCTGAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CAA 90 bp | AATAGTTTCCTTCTCAGGAAGTTCTTCAGGCTCCTGTTTGACTCCTaGGACATAGGGCATGGGGCTATTGGGTGGAGCATGACTCACTTC | + |
|
Preference number: 6 (lower is better) Translates to: NSFLLRKFFRLLFDS*DIGHGAIGWSMTHF Trigger: GAAGTGAGTCATGCTCCACCCAATAGCCCCATGCCCTATGTCCAAGGAGTCAAACAGGAGCCTGAAGAACTTCCTGAGAAGGAAACTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS TCA 72 bp | CAGGTAAGGATGAAGCTGTTTCAGCCTAGCTCTTCTTaGCAAGCCAACCCTAATTGGACGACTGCATGTCTT | + |
|
Preference number: 6 (lower is better) Translates to: QVRMKLFQPSSS*QANPNWTTACL Trigger: AAGACATGCAGTCGTCCAATTAGGGTTGGCTTGTCAAGAAGAGCTAGGCTGAAACAGCTTCATCCTTACCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CAA 72 bp | CTAGCGAAGCTGACTGCACTGAAGACATTCCGTCCATaGTGGGAAAACTATCCTCTTCCTTCTCAGTGTCAA | + |
|
Preference number: 6 (lower is better) Translates to: LAKLTALKTFRP*WENYPLPSQCQ Trigger: TTGACACTGAGAAGGAAGAGGATAGTTTTCCCACAATGGACGGAATGTCTTCAGTGCAGTCAGCTTCGCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CCA 72 bp | AAGCTGATCTTCAGAGTTATCGCCATAGCATTAATCTaGTCACTGTGTGATGTATTTTGGCTTAACAATGTG | + |
|
Preference number: 6 (lower is better) Translates to: KLIFRVIAIALI*SLCDVFWLNNV Trigger: CACATTGTTAAGCCAAAATACATCACACAGTGACCAGATTAATGCTATGGCGATAACTCTGAAGATCAGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS TCA 72 bp | AGAGTTTCTGTTGATAAACATGTAGCAGTTAAACCCTaGAAACATTCATTGTTCTCCCCACTTGAGTCACTT | + |
|
Preference number: 6 (lower is better) Translates to: RVSVDKHVAVKP*KHSLFSPLESL Trigger: AAGTGACTCAAGTGGGGAGAACAATGAATGTTTTCAGGGTTTAACTGCTACATGTTTATCAACAGAAACTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CAA 72 bp | GTTTTGAAATTCTTGTCTGGTAGGTATGTAATACTCTaGATTCCTTTCTGTTCCCTCGCAATTTGCAACTTC | + |
|
Preference number: 6 (lower is better) Translates to: VLKFLSGRYVIL*IPFCSLAICNF Trigger: GAAGTTGCAAATTGCGAGGGAACAGAAAGGAATCAAGAGTATTACATACCTACCAGACAAGAATTTCAAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS TCA 72 bp | TTAAGAGGCTGTACTCTGGAAATCCCATGCGAAAAATaGCTGCCTCCCTTCAATAAAGTTTCATTTTTATAT | + |
|
Preference number: 6 (lower is better) Translates to: LRGCTLEIPCEK*LPPFNKVSFLY Trigger: ATATAAAAATGAAACTTTATTGAAGGGAGGCAGTCATTTTTCGCATGGGATTTCCAGAGTACAGCCTCTTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||
| CDS CAA 72 bp | CAAAATAGATCTGTCACAGTCCAAGTTTTGAAATTCTaGTCTGGTAGGTATGTAATACTCTTGATTCCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: QNRSVTVQVLKF*SGRYVILLIPF Trigger: GAAAGGAATCAAGAGTATTACATACCTACCAGACAAGAATTTCAAAACTTGGACTGTGACAGATCTATTTTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124065.2 |
||