Pregenerated sensors for RAD51AP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030346Ensembl transcript IDs: ENSMUST00000112220.8, ENSMUST00000112221.8, ENSMUST00000144954.5, ENSMUST00000202897.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGAAAGATTTCAGCAATGCCTCCTGAAGGACCCAGGATGCTCCCATaGCAGAGCTGGGAGACATGTGATTACAGACGTGCCGCAGAGCCC | + |
|
Preference number: 1 (lower is better) Translates to: GKISAMPPEGPRMLP*QSWETCDYRRAAEP Trigger: GGGCTCTGCGGCACGTCTGTAATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCCTTCAGGAGGCATTGCTGAAATCTTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR GCA 90 bp | GTAGTATGGGAAAGATTTCAGCAATGCCTCCTGAAGGACCCAGGATaGTCCCATGCCAGAGCTGGGAGACATGTGATTACAGACGTGCCG | + |
|
Preference number: 1 (lower is better) Translates to: VVWERFQQCLLKDPG*SHARAGRHVITDVP Trigger: CGGCACGTCTGTAATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCCTTCAGGAGGCATTGCTGAAATCTTTCCCATACTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR TCA 90 bp | CAGAGCTGGGAGACATGTGATTACAGACGTGCCGCAGAGCCCGAGTaGCAGTGGCTTATAAACACAAGAAAACACAACACACTCTTCAGG | + |
|
Preference number: 1 (lower is better) Translates to: QSWETCDYRRAAEPE*QWLINTRKHNTLFR Trigger: CCTGAAGAGTGTGTTGTGTTTTCTTGTGTTTATAAGCCACTGTCACTCGGGCTCTGCGGCACGTCTGTAATCACATGTCTCCCAGCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR CCA 90 bp | TTATTGCTCAAAGCATACAAATTAACTCAAAACCAGGTAACTAGGTaGGTGTCACAGCACCCACCACCACTAGGGAGGCCGTGGCAGAAG | + |
|
Preference number: 1 (lower is better) Translates to: LLLKAYKLTQNQVTR*VSQHPPPLGRPWQK Trigger: CTTCTGCCACGGCCTCCCTAGTGGTGGTGGGTGCTGTGACACCCACCTAGTTACCTGGTTTTGAGTTAATTTGTATGCTTTGAGCAATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| 3UTR GCA 90 bp | ACAGTGGCTTATAAACACAAGAAAACACAACACACTCTTCAGGAGTaGCACAAGGAGAGGTCCCAGAACCCTTTGCTGAAGGACAGAAAG | + |
|
Preference number: 1 (lower is better) Translates to: TVAYKHKKTQHTLQE*HKERSQNPLLKDRK Trigger: CTTTCTGTCCTTCAGCAAAGGGTTCTGGGACCTCTCCTTGTGGCACTCCTGAAGAGTGTGTTGTGTTTTCTTGTGTTTATAAGCCACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR GCA 90 bp | TGCCTCCTGAAGGACCCAGGATGCTCCCATGCCAGAGCTGGGAGACATGTGATTCACACTCTTCAGGAGTaGCACAAGGAGAGGTCCCAG | + |
|
Preference number: 2 (lower is better) Translates to: CLLKDPGCSHARAGRHVIHTLQE*HKERSQ Trigger: CTGGGACCTCTCCTTGTGGCACTCCTGAAGAGTGTG...AATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCCTTCAGGAGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR GCA 90 bp | GGAGTGCCACAAGGAGAGGTCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTTATGACAACCCTGCTTaGAGTCCCAAGGGTCCCAGC | + |
|
Preference number: 2 (lower is better) Translates to: GVPQGEVPEPFAEGQKGFYDNPA*SPKGPS Trigger: GCTGGGACCCTTGGGACTGCAAGCAGGGTTGTCATA...AAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGACCTCTCCTTGTGGCACTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR GCA 90 bp | TCAATGATGAAGACACTCCTCCCCCTGCTTATTTTGACCACAGAAGACTCATTTCTGAAGGACCCAGGATaGTCCCATGCCAGAGCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: SMMKTLLPLLILTTEDSFLKDPG*SHARAG Trigger: CCCAGCTCTGGCATGGGAGCATCCTGGGTCCTTCAG...AAATGAGTCTTCTGTGGTCAAAATAAGCAGGGGGAGGAGTGTCTTCATCATTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR GCA 90 bp | CCACCTGTCCCATGTAGGAACACATGCTGCAGTAGAGTCAACATGTTAATATGTTATGACAACCCTGCTTaGAGTCCCAAGGGTCCCAGC | + |
|
Preference number: 2 (lower is better) Translates to: PPVPCRNTCCSRVNMLICYDNPA*SPKGPS Trigger: GCTGGGACCCTTGGGACTGCAAGCAGGGTTGTCATA...ACATATTAACATGTTGACTCTACTGCAGCATGTGTTCCTACATGGGACAGGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR CCA 90 bp | GCTGGGAGACATGTGATTACAGACGTGCCGCAGAGCCCGAGTGACAGTGGCTTAAAAGGTTCTCTTATGTaGAAGCTGAATATGACAACC | + |
|
Preference number: 2 (lower is better) Translates to: AGRHVITDVPQSPSDSGLKGSLM*KLNMTT Trigger: GGTTGTCATATTCAGCTTCCACATAAGAGAACCTTT...TAAGCCACTGTCACTCGGGCTCTGCGGCACGTCTGTAATCACATGTCTCCCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR GCA 90 bp | AGCAACACGTACACATGCAGGTACATACATGGTATCAATGAGCATAGCTTACATCCCAGGATGCTCCCATaGCAGAGCTGGGAGACATGT | + |
|
Preference number: 2 (lower is better) Translates to: SNTYTCRYIHGINEHSLHPRMLP*QSWETC Trigger: ACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGG...ATGTAAGCTATGCTCATTGATACCATGTATGTACCTGCATGTGTACGTGTTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR GCA 90 bp | AGCAACACGTACACATGCAGGTACATACATGGTATCAATGAGCATAGCTTACATCACACTCTTCAGGAGTaGCACAAGGAGAGGTCCCAG | + |
|
Preference number: 2 (lower is better) Translates to: SNTYTCRYIHGINEHSLHHTLQE*HKERSQ Trigger: CTGGGACCTCTCCTTGTGGCACTCCTGAAGAGTGTG...ATGTAAGCTATGCTCATTGATACCATGTATGTACCTGCATGTGTACGTGTTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR CCA 90 bp | CTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCACACACAGACATGGTCCTTAAAGGTTCTCTTATGTaGAAGCTGAATATGACAACC | + |
|
Preference number: 2 (lower is better) Translates to: LKDRKALMRPESHTDMVLKGSLM*KLNMTT Trigger: GGTTGTCATATTCAGCTTCCACATAAGAGAACCTTT...AAGGACCATGTCTGTGTGTGATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR GCA 90 bp | TCAATGATGAAGACACTCCTCCCCCTGCTTATTTTGACCACAGAAGACTCATTTTGTAGGAACACATGCTaGAGTAGAGTCAACATGTTA | + |
|
Preference number: 2 (lower is better) Translates to: SMMKTLLPLLILTTEDSFCRNTC*SRVNML Trigger: TAACATGTTGACTCTACTGCAGCATGTGTTCCTACA...AAATGAGTCTTCTGTGGTCAAAATAAGCAGGGGGAGGAGTGTCTTCATCATTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR CCA 90 bp | GCATACAAATTAACTCAAAACCAGGTAACTAGGTGGGTGTCACAGCACCCACCAGATGTACAAAAGCAATaGTCACTTAAATCAAAGCTG | + |
|
Preference number: 2 (lower is better) Translates to: AYKLTQNQVTRWVSQHPPDVQKQ*SLKSKL Trigger: CAGCTTTGATTTAAGTGACCATTGCTTTTGTACATC...TGGTGGGTGCTGTGACACCCACCTAGTTACCTGGTTTTGAGTTAATTTGTATGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| 3UTR TCA 72 bp | ACCCAGGATGCTCCCATGCCAGAGCTGGGAGACATGTaGTTACAGACGTGCCGCAGAGCCCGAGTGACAGTG | + |
|
Preference number: 3 (lower is better) Translates to: TQDAPMPELGDM*LQTCRRARVTV Trigger: CACTGTCACTCGGGCTCTGCGGCACGTCTGTAATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR-3UTR CAA 90 bp | GCTGGGAGACATGTGATTACAGACGTGCCGCAGAGCCCGAGTGACAGTGGCTTAAAGGACAGAAAGGCTTaGATGAGACCAGAATCACAC | + |
|
Preference number: 3 (lower is better) Translates to: AGRHVITDVPQSPSDSGLKDRKA*MRPESH Trigger: GTGTGATTCTGGTCTCATCAAAGCCTTTCTGTCCTT...TAAGCCACTGTCACTCGGGCTCTGCGGCACGTCTGTAATCACATGTCTCCCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR GCA 72 bp | GAAAGATTTCAGCAATGCCTCCTGAAGGACCCAGGATaGTCCCATGCCAGAGCTGGGAGACATGTGATTACA | + |
|
Preference number: 3 (lower is better) Translates to: ERFQQCLLKDPG*SHARAGRHVIT Trigger: TGTAATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCCTTCAGGAGGCATTGCTGAAATCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR CCA 72 bp | AAAGCATACAAATTAACTCAAAACCAGGTAACTAGGTaGGTGTCACAGCACCCACCACCACTAGGGAGGCCG | + |
|
Preference number: 3 (lower is better) Translates to: KAYKLTQNQVTR*VSQHPPPLGRP Trigger: CGGCCTCCCTAGTGGTGGTGGGTGCTGTGACACCCACCTAGTTACCTGGTTTTGAGTTAATTTGTATGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| 3UTR TCA 72 bp | GAGACATGTGATTACAGACGTGCCGCAGAGCCCGAGTaGCAGTGGCTTATAAACACAAGAAAACACAACACA | + |
|
Preference number: 3 (lower is better) Translates to: ETCDYRRAAEPE*QWLINTRKHNT Trigger: TGTGTTGTGTTTTCTTGTGTTTATAAGCCACTGTCACTCGGGCTCTGCGGCACGTCTGTAATCACATGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| 3UTR TCA 72 bp | CTGCTTGTCCTCACGGTAACACAGATGTCTCATAGCTaGGAACTAGGCGAGGCATGCACATTTTACAGTAAA | + |
|
Preference number: 3 (lower is better) Translates to: LLVLTVTQMSHS*ELGEACTFYSK Trigger: TTTACTGTAAAATGTGCATGCCTCGCCTAGTTCTCAGCTATGAGACATCTGTGTTACCGTGAGGACAAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| CDS-3UTR CCA 90 bp | GGACCCAGGATGCTCCCATGCCAGAGCTGGGAGACATGTGATTACAGACGTGCCTCCTCCGCGGAGCCTTaGCTTGAGATGGTGACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: GPRMLPCQSWETCDYRRASSAEP*LEMVTS Trigger: GGAAGTCACCATCTCAAGCCAAGGCTCCGCGGAGGA...GGCACGTCTGTAATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | TGCCTCCTGAAGGACCCAGGATGCTCCCATGCCAGAGCTGGGAGACATGTGATTATGGAGATCCTGACTTaGTGGCAGCTGGAGCTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: CLLKDPGCSHARAGRHVIMEILT*WQLELG Trigger: ACCCAGCTCCAGCTGCCATCAAGTCAGGATCTCCAT...AATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCCTTCAGGAGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | GGACCCAGGATGCTCCCATGCCAGAGCTGGGAGACATGTGATTACAGACGTGCCCGTCCCCCTCCTCTGTaGTCTTGTCCAAATCTACAT | + |
|
Preference number: 4 (lower is better) Translates to: GPRMLPCQSWETCDYRRARPPPL*SCPNLH Trigger: ATGTAGATTTGGACAAGATCACAGAGGAGGGGGACG...GGCACGTCTGTAATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| CDS-3UTR GCA 90 bp | GGAGTGCCACAAGGAGAGGTCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTCCCACTTGGGCCTCTTaGTTTCAGCTGAAGGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GVPQGEVPEPFAEGQKGFPTWAS*FQLKGC Trigger: GCAGCCCTTCAGCTGAAAGCAAGAGGCCCAAGTGGG...AAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGACCTCTCCTTGTGGCACTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | CACTCTTCAGGAGTGCCACAAGGAGAGGTCCCAGAACCCTTTGCTGAAGGACAGCCTCTTGCTTTCAGCTaGAGGGCTGCACATTATTGC | + |
|
Preference number: 4 (lower is better) Translates to: HSSGVPQGEVPEPFAEGQPLAFS*RAAHYC Trigger: GCAATAATGTGCAGCCCTTCAGCTGAAAGCAAGAGG...CTGTCCTTCAGCAAAGGGTTCTGGGACCTCTCCTTGTGGCACTCCTGAAGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CCA 90 bp | GCTGGGAGACATGTGATTACAGACGTGCCGCAGAGCCCGAGTGACAGTGGCTTAGCTGCACATTATTGCTaGTTTCCTAGTGGCCTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: AGRHVITDVPQSPSDSGLAAHYC*FPSGLR Trigger: TCTGAGGCCACTAGGAAACCAGCAATAATGTGCAGC...TAAGCCACTGTCACTCGGGCTCTGCGGCACGTCTGTAATCACATGTCTCCCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | GAGACCAGAATCACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCCGCGGAGCCTTGGCTTaGGATGGTGACTTCCTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: ETRITHRHGPSCDPLKVLRGALA*DGDFLS Trigger: GGAGAGGAAGTCACCATCTCAAGCCAAGGCTCCGCG...GAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGTGATTCTGGTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | CCACCTGTCCCATGTAGGAACACATGCTGCAGTAGAGTCAACATGTTAATATGTCGCGGAGCCTTGGCTTaGGATGGTGACTTCCTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: PPVPCRNTCCSRVNMLICRGALA*DGDFLS Trigger: GGAGAGGAAGTCACCATCTCAAGCCAAGGCTCCGCG...ACATATTAACATGTTGACTCTACTGCAGCATGTGTTCCTACATGGGACAGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | GAGACCAGAATCACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCATGGAGATCCTGACTTaGTGGCAGCTGGAGCTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: ETRITHRHGPSCDPLKVLMEILT*WQLELG Trigger: ACCCAGCTCCAGCTGCCATCAAGTCAGGATCTCCAT...GAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGTGATTCTGGTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR GCA 90 bp | CCACCTGTCCCATGTAGGAACACATGCTGCAGTAGAGTCAACATGTTAATATGTCCCACTTGGGCCTCTTaGTTTCAGCTGAAGGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: PPVPCRNTCCSRVNMLICPTWAS*FQLKGC Trigger: GCAGCCCTTCAGCTGAAAGCAAGAGGCCCAAGTGGG...ACATATTAACATGTTGACTCTACTGCAGCATGTGTTCCTACATGGGACAGGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR GCA 90 bp | TCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCACACCTTGTGGCACTTGGATaGAAGCGCTTAACTGGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: SQNPLLKDRKALMRPESHLVALG*KRLTGA Trigger: AGCGCCAGTTAAGCGCTTGCATCCAAGTGCCACAAG...GTGTGATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | AGGTCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCACCTCTTGCTTTCAGCTaGAGGGCTGCACATTATTGC | + |
|
Preference number: 4 (lower is better) Translates to: RSQNPLLKDRKALMRPESPLAFS*RAAHYC Trigger: GCAATAATGTGCAGCCCTTCAGCTGAAAGCAAGAGG...TGATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGACCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CCA 90 bp | ACTCAAAACCAGGTAACTAGGTGGGTGTCACAGCACCCACCACCACTAGGGAGGCTGATGCCTCACATTTaGGTTTTGATTTCCTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: TQNQVTRWVSQHPPPLGRLMPHI*VLISFP Trigger: AGGAAAGGAAATCAAAACCCAAATGTGAGGCATCAG...CCTCCCTAGTGGTGGTGGGTGCTGTGACACCCACCTAGTTACCTGGTTTTGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| CDS-3UTR GCA 90 bp | ACTCAAAACCAGGTAACTAGGTGGGTGTCACAGCACCCACCACCACTAGGGAGGGGTTTTGGTTTGTCTTaGTTTAATACCTTTGGCACA | + |
|
Preference number: 4 (lower is better) Translates to: TQNQVTRWVSQHPPPLGRGFGLS*FNTFGT Trigger: TGTGCCAAAGGTATTAAAGCAAGACAAACCAAAACC...CCTCCCTAGTGGTGGTGGGTGCTGTGACACCCACCTAGTTACCTGGTTTTGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| CDS-3UTR GCA 90 bp | TTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCACACACAGACATGGTCTTGTGGCACTTGGATaGAAGCGCTTAACTGGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: FAEGQKGFDETRITHRHGLVALG*KRLTGA Trigger: AGCGCCAGTTAAGCGCTTGCATCCAAGTGCCACAAG...ACCATGTCTGTGTGTGATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CCA 90 bp | ACTCAAAACCAGGTAACTAGGTGGGTGTCACAGCACCCACCACCACTAGGGAGGACTTCTAGACCTCTTTaGAAGACCTTGTCATCTAAA | + |
|
Preference number: 4 (lower is better) Translates to: TQNQVTRWVSQHPPPLGRTSRPL*KTLSSK Trigger: TTTAGATGACAAGGTCTTCCAAAGAGGTCTAGAAGT...CCTCCCTAGTGGTGGTGGGTGCTGTGACACCCACCTAGTTACCTGGTTTTGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| CDS-3UTR TCA 90 bp | GAGGTCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCTCTTTACTTGGTTGGTaGGTGTTGGAAGTTCCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: EVPEPFAEGQKGFDETRISLLGW*VLEVPS Trigger: TGAAGGAACTTCCAACACTCACCAACCAAGTAAAGA...GATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGACCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | ACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCTTATGTGGAAGCCGTCCCCCTCCTCTGTaGTCTTGTCCAAATCTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: THRHGPSCDPLKVLLCGSRPPPL*SCPNLL Trigger: TAGAAGATTTGGACAAGATCACAGAGGAGGGGGACG...GCTTCCACATAAGAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | GAGACCAGAATCACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCCTGCAGTTAGAGACATaGGGAGGTTTACCCGTATTT | + |
|
Preference number: 4 (lower is better) Translates to: ETRITHRHGPSCDPLKVLLQLET*GGLPVF Trigger: AAATACGGGTAAACCTCCTCATGTCTCTAACTGCAG...GAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGTGATTCTGGTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CCA 90 bp | GAGGTCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCCAGTGCTTTTCTCTTTaGACTTCTTTACTTGGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: EVPEPFAEGQKGFDETRIQCFSL*TSLLGW Trigger: CCAACCAAGTAAAGAAGTCCAAAGAGAAAAGCACTG...GATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGACCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CCA 90 bp | CCACCTGTCCCATGTAGGAACACATGCTGCAGTAGAGTCAACATGTTAATATGTGCTGCACATTATTGCTaGTTTCCTAGTGGCCTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: PPVPCRNTCCSRVNMLICAAHYC*FPSGLR Trigger: TCTGAGGCCACTAGGAAACCAGCAATAATGTGCAGC...ACATATTAACATGTTGACTCTACTGCAGCATGTGTTCCTACATGGGACAGGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | GAGACCAGAATCACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCCTTTGGCACAGTTTTTaGCTTGTTTACAGGTGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: ETRITHRHGPSCDPLKVLLWHSF*LVYRCG Trigger: TCCACACCTGTAAACAAGTCAAAAACTGTGCCAAAG...GAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGTGATTCTGGTCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | ACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCTTATGTGGAAGCCTGCAGTTAGAGACATaGGGAGGTTTACCCGTATTT | + |
|
Preference number: 4 (lower is better) Translates to: THRHGPSCDPLKVLLCGSLQLET*GGLPVF Trigger: AAATACGGGTAAACCTCCTCATGTCTCTAACTGCAG...GCTTCCACATAAGAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR GCA 90 bp | TTACAGACGTGCCGCAGAGCCCGAGTGACAGTGGCTTATAAACACAAGAAAACACATCATCAGAGTCATTaGCAGAATCTTCAAACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: LQTCRRARVTVAYKHKKTHHQSH*QNLQTV Trigger: CACAGTTTGAAGATTCTGGCAATGACTCTGATGATG...TGTTTTCTTGTGTTTATAAGCCACTGTCACTCGGGCTCTGCGGCACGTCTGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR GCA 90 bp | CTCAATGATGAAGACACTCCTCCCCCTGCTTATTTTGACCACAGAAGACTCATTTTTCAGCTGAAGGGCTaGACATTATTGCTGGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LNDEDTPPPAYFDHRRLIFQLKG*TLLLVS Trigger: GGAAACCAGCAATAATGTGCAGCCCTTCAGCTGAAA...AATGAGTCTTCTGTGGTCAAAATAAGCAGGGGGAGGAGTGTCTTCATCATTGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CCA 90 bp | TTACAGACGTGCCGCAGAGCCCGAGTGACAGTGGCTTATAAACACAAGAAAACACAGTGCTTTTCTCTTTaGACTTCTTTACTTGGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LQTCRRARVTVAYKHKKTQCFSL*TSLLGW Trigger: CCAACCAAGTAAAGAAGTCCAAAGAGAAAAGCACTG...TGTTTTCTTGTGTTTATAAGCCACTGTCACTCGGGCTCTGCGGCACGTCTGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | ACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCTTATGTGGAAGCCTTTGGCACAGTTTTTaGCTTGTTTACAGGTGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: THRHGPSCDPLKVLLCGSLWHSF*LVYRCG Trigger: TCCACACCTGTAAACAAGTCAAAAACTGTGCCAAAG...GCTTCCACATAAGAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR TCA 90 bp | CAGATAAAGCCAGGGCAACTTCTAGACCTCTTTGGAAGACCTTGTCATCTAAAGCTTTGGCACAGTTTTTaGCTTGTTTACAGGTGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: QIKPGQLLDLFGRPCHLKLWHSF*LVYRCG Trigger: TCCACACCTGTAAACAAGTCAAAAACTGTGCCAAAG...CTTTAGATGACAAGGTCTTCCAAAGAGGTCTAGAAGTTGCCCTGGCTTTATCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000202897.2 |
||
| CDS-3UTR TCA 90 bp | ACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCTTATGTGGAAGCTCTTTACTTGGTTGGTaGGTGTTGGAAGTTCCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: THRHGPSCDPLKVLLCGSSLLGW*VLEVPS Trigger: TGAAGGAACTTCCAACACTCACCAACCAAGTAAAGA...GCTTCCACATAAGAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR GCA 90 bp | TTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCACACACAGACATGGTCATCATCAGAGTCATTaGCAGAATCTTCAAACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: FAEGQKGFDETRITHRHGHHQSH*QNLQTV Trigger: CACAGTTTGAAGATTCTGGCAATGACTCTGATGATG...ACCATGTCTGTGTGTGATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR GCA 90 bp | CAGATAAAGCCAGGGCAACTTCTAGACCTCTTTGGAAGACCTTGTCATCTAAAGCATCATCAGAGTCATTaGCAGAATCTTCAAACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: QIKPGQLLDLFGRPCHLKHHQSH*QNLQTV Trigger: CACAGTTTGAAGATTCTGGCAATGACTCTGATGATG...CTTTAGATGACAAGGTCTTCCAAAGAGGTCTAGAAGTTGCCCTGGCTTTATCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202897.2 |
||
| CDS-3UTR CCA 90 bp | ACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCTTATGTGGAAGCACTTCTAGACCTCTTTaGAAGACCTTGTCATCTAAA | + |
|
Preference number: 4 (lower is better) Translates to: THRHGPSCDPLKVLLCGSTSRPL*KTLSSK Trigger: TTTAGATGACAAGGTCTTCCAAAGAGGTCTAGAAGT...GCTTCCACATAAGAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CCA 90 bp | AGCAACACGTACACATGCAGGTACATACATGGTATCAATGAGCATAGCTTACATCTGATGCCTCACATTTaGGTTTTGATTTCCTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SNTYTCRYIHGINEHSLHLMPHI*VLISFP Trigger: AGGAAAGGAAATCAAAACCCAAATGTGAGGCATCAG...ATGTAAGCTATGCTCATTGATACCATGTATGTACCTGCATGTGTACGTGTTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR GCA 90 bp | AGCAACACGTACACATGCAGGTACATACATGGTATCAATGAGCATAGCTTACATGGTTTTGGTTTGTCTTaGTTTAATACCTTTGGCACA | + |
|
Preference number: 4 (lower is better) Translates to: SNTYTCRYIHGINEHSLHGFGLS*FNTFGT Trigger: TGTGCCAAAGGTATTAAAGCAAGACAAACCAAAACC...ATGTAAGCTATGCTCATTGATACCATGTATGTACCTGCATGTGTACGTGTTGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS GCA 90 bp | GAGGCCCAGACGCAGGCTCTGACTCGGGGACTTGGCAGGTGTTCCTaGCAATGCATTGCTGCTAGAGTTCCTGCTCCCAGAGGCAGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: EAQTQALTRGLGRCS*QCIAARVPAPRGSW Trigger: CCAGCTGCCTCTGGGAGCAGGAACTCTAGCAGCAATGCATTGGCAGGAACACCTGCCAAGTCCCCGAGTCAGAGCCTGCGTCTGGGCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS CCA 90 bp | TGCTGCCATCGCTGCCTTCAGAAGGTGCTCTCCTCCGCGGAGCCTTaGCTTGAGATGGTGACTTCCTCTCCCCTTCAACACTCGAGGCGT | + |
|
Preference number: 5 (lower is better) Translates to: CCHRCLQKVLSSAEP*LEMVTSSPLQHSRR Trigger: ACGCCTCGAGTGTTGAAGGGGAGAGGAAGTCACCATCTCAAGCCAAGGCTCCGCGGAGGAGAGCACCTTCTGAAGGCAGCGATGGCAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 ENSMUST00000144954.5 |
||
| CDS-3UTR CAA 90 bp | TGCCTCCTGAAGGACCCAGGATGCTCCCATGCCAGAGCTGGGAGACATGTGATTGATGGAGATCCTGACTaGATGGCAGCTGGAGCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: CLLKDPGCSHARAGRHVIDGDPD*MAAGAG Trigger: CCCAGCTCCAGCTGCCATCAAGTCAGGATCTCCATC...AATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCCTTCAGGAGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | CACTCTTCAGGAGTGCCACAAGGAGAGGTCCCAGAACCCTTTGCTGAAGGACAGGATGGAGATCCTGACTaGATGGCAGCTGGAGCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: HSSGVPQGEVPEPFAEGQDGDPD*MAAGAG Trigger: CCCAGCTCCAGCTGCCATCAAGTCAGGATCTCCATC...CTGTCCTTCAGCAAAGGGTTCTGGGACCTCTCCTTGTGGCACTCCTGAAGAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS TCA 90 bp | CAGAAGGAAGACCAACTGCCTGGGGTAAAGATGGAGATCCTGACTTaGTGGCAGCTGGAGCTGGGTCTACTGAAGTCACTGATGCCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: QKEDQLPGVKMEILT*WQLELGLLKSLMPH Trigger: GTGAGGCATCAGTGACTTCAGTAGACCCAGCTCCAGCTGCCATCAAGTCAGGATCTCCATCTTTACCCCAGGCAGTTGGTCTTCCTTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | TGCCTCCTGAAGGACCCAGGATGCTCCCATGCCAGAGCTGGGAGACATGTGATTTTTGGACTTCTTTACTaGGTTGGTGAGTGTTGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: CLLKDPGCSHARAGRHVIFGLLY*VGECWK Trigger: CTTCCAACACTCACCAACCAAGTAAAGAAGTCCAAA...AATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCCTTCAGGAGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | TGCCTCCTGAAGGACCCAGGATGCTCCCATGCCAGAGCTGGGAGACATGTGATTACTGATGCCTCACATTaGGGTTTTGATTTCCTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: CLLKDPGCSHARAGRHVITDASH*GFDFLS Trigger: GGAAAGGAAATCAAAACCCAAATGTGAGGCATCAGT...AATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCCTTCAGGAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | GGACCCAGGATGCTCCCATGCCAGAGCTGGGAGACATGTGATTACAGACGTGCCCTTGCTTTAATACCTTaGGCACAGTTTTTGACTTGT | + |
|
Preference number: 5 (lower is better) Translates to: GPRMLPCQSWETCDYRRALALIP*AQFLTC Trigger: ACAAGTCAAAAACTGTGCCAAAGGTATTAAAGCAAG...GGCACGTCTGTAATCACATGTCTCCCAGCTCTGGCATGGGAGCATCCTGGGTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | GCTGGGAGACATGTGATTACAGACGTGCCGCAGAGCCCGAGTGACAGTGGCTTATTCTCTTTGCCTTGTTaGTCAGTGCTTTTCTCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: AGRHVITDVPQSPSDSGLFSLPC*SVLFSL Trigger: CAAAGAGAAAAGCACTGACAAACAAGGCAAAGAGAA...TAAGCCACTGTCACTCGGGCTCTGCGGCACGTCTGTAATCACATGTCTCCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | ACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCTTATGTGGAAGCACCGCACTTGGCTGCTaGTGGCACTTGGATGCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: THRHGPSCDPLKVLLCGSTALGC*WHLDAS Trigger: GCTTGCATCCAAGTGCCACAAGCAGCCAAGTGCGGT...GCTTCCACATAAGAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | GGAGTGCCACAAGGAGAGGTCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTCCCTCCTCTGTGATCTaGTCCAAATCTTCTACATCA | + |
|
Preference number: 5 (lower is better) Translates to: GVPQGEVPEPFAEGQKGFPSSVI*SKSSTS Trigger: TGATGTAGAAGATTTGGACAAGATCACAGAGGAGGG...AAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGACCTCTCCTTGTGGCACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | GCTGGGAGACATGTGATTACAGACGTGCCGCAGAGCCCGAGTGACAGTGGCTTACTTGCTTTAATACCTTaGGCACAGTTTTTGACTTGT | + |
|
Preference number: 5 (lower is better) Translates to: AGRHVITDVPQSPSDSGLLALIP*AQFLTC Trigger: ACAAGTCAAAAACTGTGCCAAAGGTATTAAAGCAAG...TAAGCCACTGTCACTCGGGCTCTGCGGCACGTCTGTAATCACATGTCTCCCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | GAGGTCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCGACTTCTTTACTTGGTaGGTGAGTGTTGGAAGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: EVPEPFAEGQKGFDETRIDFFTW*VSVGSS Trigger: GGAACTTCCAACACTCACCAACCAAGTAAAGAAGTC...GATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGACCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS TCA 90 bp | GTCTTCATCACTTTCTTTACTCTCATCAAAATCAGGATCACTTTCTaGACCTTCACCAGTGGCGCTCTCCGACTCCGTGTCGTTAGCACT | + |
|
Preference number: 5 (lower is better) Translates to: VFITFFTLIKIRITF*TFTSGALRLRVVST Trigger: AGTGCTAACGACACGGAGTCGGAGAGCGCCACTGGTGAAGGTTCAGAAAGTGATCCTGATTTTGATGAGAGTAAAGAAAGTGATGAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 ENSMUST00000144954.5 |
||
| CDS-3UTR CAA 90 bp | CCATGTAGGAACACATGCTGCAGTAGAGTCAACATGTTAATATGTACAAAAGCAACCGCACTTGGCTGCTaGTGGCACTTGGATGCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: PCRNTCCSRVNMLICTKATALGC*WHLDAS Trigger: GCTTGCATCCAAGTGCCACAAGCAGCCAAGTGCGGT...TGCTTTTGTACATATTAACATGTTGACTCTACTGCAGCATGTGTTCCTACATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | TCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCACACTTTGGACTTCTTTACTaGGTTGGTGAGTGTTGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: SQNPLLKDRKALMRPESHFGLLY*VGECWK Trigger: CTTCCAACACTCACCAACCAAGTAAAGAAGTCCAAA...GTGTGATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | AAAGGTTCTCTTATGTGGAAGCTGAATATGACAACCCTGCTTGCAGTCCCAAGGCCCTCCTCTGTGATCTaGTCCAAATCTACATCATCA | + |
|
Preference number: 5 (lower is better) Translates to: KGSLMWKLNMTTLLAVPRPSSVI*SKSTSS Trigger: TGATGATGTAGATTTGGACAAGATCACAGAGGAGGG...CCTTGGGACTGCAAGCAGGGTTGTCATATTCAGCTTCCACATAAGAGAACCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| CDS-3UTR CAA 90 bp | TCCCAGAACCCTTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCACACTGTTTTCTCTTTGCCTaGTTTGTCAGTGCTTTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: SQNPLLKDRKALMRPESHCFLFA*FVSAFL Trigger: GAGAAAAGCACTGACAAACAAGGCAAAGAGAAAACA...GTGTGATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAAGGGTTCTGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | AAAGGTTCTCTTATGTGGAAGCTGAATATGACAACCCTGCTTGCAGTCCCAAGGACTGATGCCTCACATTaGGGTTTTGATTTCCTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: KGSLMWKLNMTTLLAVPRTDASH*GFDFLS Trigger: GGAAAGGAAATCAAAACCCAAATGTGAGGCATCAGT...CCTTGGGACTGCAAGCAGGGTTGTCATATTCAGCTTCCACATAAGAGAACCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | AAAGGTTCTCTTATGTGGAAGCTGAATATGACAACCCTGCTTGCAGTCCCAAGGTCATCATCAGAGTCATaGCCAGAATCTTCAAACTGT | + |
|
Preference number: 5 (lower is better) Translates to: KGSLMWKLNMTTLLAVPRSSSES*PESSNC Trigger: ACAGTTTGAAGATTCTGGCAATGACTCTGATGATGA...CCTTGGGACTGCAAGCAGGGTTGTCATATTCAGCTTCCACATAAGAGAACCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | ACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCTTATGTGGAAGCTCATCATCAGAGTCATaGCCAGAATCTTCAAACTGT | + |
|
Preference number: 5 (lower is better) Translates to: THRHGPSCDPLKVLLCGSSSSES*PESSNC Trigger: ACAGTTTGAAGATTCTGGCAATGACTCTGATGATGA...GCTTCCACATAAGAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | CAGATAAAGCCAGGGCAACTTCTAGACCTCTTTGGAAGACCTTGTCATCTAAAGTCATCATCAGAGTCATaGCCAGAATCTTCAAACTGT | + |
|
Preference number: 5 (lower is better) Translates to: QIKPGQLLDLFGRPCHLKSSSES*PESSNC Trigger: ACAGTTTGAAGATTCTGGCAATGACTCTGATGATGA...CTTTAGATGACAAGGTCTTCCAAAGAGGTCTAGAAGTTGCCCTGGCTTTATCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202897.2 |
||
| CDS-3UTR CAA 90 bp | AGAATCACACACAGACATGGTCCTTCATGTGACCCATTAAAGGTTCTCTTATGTGACTTCTTTACTTGGTaGGTGAGTGTTGGAAGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: RITHRHGPSCDPLKVLLCDFFTW*VSVGSS Trigger: GGAACTTCCAACACTCACCAACCAAGTAAAGAAGTC...ACATAAGAGAACCTTTAATGGGTCACATGAAGGACCATGTCTGTGTGTGATTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | CCACCTGTCCCATGTAGGAACACATGCTGCAGTAGAGTCAACATGTTAATATGTTTCTCTTTGCCTTGTTaGTCAGTGCTTTTCTCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: PPVPCRNTCCSRVNMLICFSLPC*SVLFSL Trigger: CAAAGAGAAAAGCACTGACAAACAAGGCAAAGAGAA...ACATATTAACATGTTGACTCTACTGCAGCATGTGTTCCTACATGGGACAGGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS-3UTR CAA 90 bp | TTTGCTGAAGGACAGAAAGGCTTTGATGAGACCAGAATCACACACAGACATGGTTGTTTTCTCTTTGCCTaGTTTGTCAGTGCTTTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: FAEGQKGFDETRITHRHGCFLFA*FVSAFL Trigger: GAGAAAAGCACTGACAAACAAGGCAAAGAGAAAACA...ACCATGTCTGTGTGTGATTCTGGTCTCATCAAAGCCTTTCTGTCCTTCAGCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS TCA 72 bp | AGGTGCTCTCCTCCGCGGAGCCTTGGCTTGAGATGGTaGCTTCCTCTCCCCTTCAACACTCGAGGCGTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: RCSPPRSLGLRW*LPLPFNTRGVP Trigger: GGGGACGCCTCGAGTGTTGAAGGGGAGAGGAAGTCACCATCTCAAGCCAAGGCTCCGCGGAGGAGAGCACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 ENSMUST00000144954.5 |
||
| CDS TCA 72 bp | ACTGGCGCTAATCGGGAGAGGCCCAGACGCAGGCTCTaGCTCGGGGACTTGGCAGGTGTTCCTGCCAATGCA | + |
|
Preference number: 6 (lower is better) Translates to: TGANRERPRRRL*LGDLAGVPANA Trigger: TGCATTGGCAGGAACACCTGCCAAGTCCCCGAGTCAGAGCCTGCGTCTGGGCCTCTCCCGATTAGCGCCAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS CCA 72 bp | CGCTGCCTTCAGAAGGTGCTCTCCTCCGCGGAGCCTTaGCTTGAGATGGTGACTTCCTCTCCCCTTCAACAC | + |
|
Preference number: 6 (lower is better) Translates to: RCLQKVLSSAEP*LEMVTSSPLQH Trigger: GTGTTGAAGGGGAGAGGAAGTCACCATCTCAAGCCAAGGCTCCGCGGAGGAGAGCACCTTCTGAAGGCAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 ENSMUST00000144954.5 |
||
| CDS GCA 72 bp | ACGCAGGCTCTGACTCGGGGACTTGGCAGGTGTTCCTaGCAATGCATTGCTGCTAGAGTTCCTGCTCCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: TQALTRGLGRCS*QCIAARVPAPR Trigger: TCTGGGAGCAGGAACTCTAGCAGCAATGCATTGGCAGGAACACCTGCCAAGTCCCCGAGTCAGAGCCTGCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS TCA 72 bp | GACCAACTGCCTGGGGTAAAGATGGAGATCCTGACTTaGTGGCAGCTGGAGCTGGGTCTACTGAAGTCACTG | + |
|
Preference number: 6 (lower is better) Translates to: DQLPGVKMEILT*WQLELGLLKSL Trigger: CAGTGACTTCAGTAGACCCAGCTCCAGCTGCCATCAAGTCAGGATCTCCATCTTTACCCCAGGCAGTTGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS TCA 72 bp | TCTCCCCTTCAACACTCGAGGCGTCCCCCTCCTCTGTaGTCTTGTCCAAATCTACATCATCACTGGCTACAC | + |
|
Preference number: 6 (lower is better) Translates to: SPLQHSRRPPPL*SCPNLHHHWLH Trigger: GTGTAGCCAGTGATGATGTAGATTTGGACAAGATCACAGAGGAGGGGGACGCCTCGAGTGTTGAAGGGGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112220.8 |
||
| CDS CAA 72 bp | AGACCAACTGCCTGGGGTAAAGATGGAGATCCTGACTaGATGGCAGCTGGAGCTGGGTCTACTGAAGTCACT | + |
|
Preference number: 6 (lower is better) Translates to: RPTAWGKDGDPD*MAAGAGSTEVT Trigger: AGTGACTTCAGTAGACCCAGCTCCAGCTGCCATCAAGTCAGGATCTCCATCTTTACCCCAGGCAGTTGGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS CAA 90 bp | TCAGAAGGAAGACCAACTGCCTGGGGTAAAGATGGAGATCCTGACTaGATGGCAGCTGGAGCTGGGTCTACTGAAGTCACTGATGCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: SEGRPTAWGKDGDPD*MAAGAGSTEVTDAS Trigger: TGAGGCATCAGTGACTTCAGTAGACCCAGCTCCAGCTGCCATCAAGTCAGGATCTCCATCTTTACCCCAGGCAGTTGGTCTTCCTTCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 |
||
| CDS TCA 72 bp | TCTCCCCTTCAACACTCGAGGCGTCCCCCTCCTCTGTaGTCTTGTCCAAATCTTCTACATCATCACTGGCTA | + |
|
Preference number: 6 (lower is better) Translates to: SPLQHSRRPPPL*SCPNLLHHHWL Trigger: TAGCCAGTGATGATGTAGAAGATTTGGACAAGATCACAGAGGAGGGGGACGCCTCGAGTGTTGAAGGGGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112221.8 ENSMUST00000144954.5 |
||
| CDS TCA 72 bp | ACTTTCTTTACTCTCATCAAAATCAGGATCACTTTCTaGACCTTCACCAGTGGCGCTCTCCGACTCCGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: TFFTLIKIRITF*TFTSGALRLRV Trigger: GACACGGAGTCGGAGAGCGCCACTGGTGAAGGTTCAGAAAGTGATCCTGATTTTGATGAGAGTAAAGAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112220.8 ENSMUST00000112221.8 ENSMUST00000144954.5 |
||