Pregenerated sensors for RAD23B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028426Ensembl transcript IDs: ENSMUST00000030134.9
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCACTGGACCTTACCCCTCTCCCCAACCCACTGCTCTTCTGCCCTaGAAGATGCACCGTTTCATTCTGAGACATCTCACATTGCCCACT | + |
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Preference number: 1 (lower is better) Translates to: STGPYPSPQPTALLP*KMHRFILRHLTLPT Trigger: AGTGGGCAATGTGAGATGTCTCAGAATGAAACGGTGCATCTTTCAGGGCAGAAGAGCAGTGGGTTGGGGAGAGGGGTAAGGTCCAGTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR CCA 90 bp | GGTATCTCCACTGAGGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTaGGGGAAACTATTACTCCTAGGATCTGCAGGTTTGTGTCCAAGG | + |
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Preference number: 1 (lower is better) Translates to: GISTEEEVVHGLGCP*GKLLLLGSAGLCPR Trigger: CCTTGGACACAAACCTGCAGATCCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCCTCAGTGGAGATACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR GCA 90 bp | CCATGGGCTGGGCTGTCCTTGGGGGAAACTATTACTCCTAGGATCTaGAGGTTTGTGTCCAAGGACAAAAAGTCCCATGCCACCAACTTC | + |
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Preference number: 1 (lower is better) Translates to: PWAGLSLGETITPRI*RFVSKDKKSHATNF Trigger: GAAGTTGGTGGCATGGGACTTTTTGTCCTTGGACACAAACCTGCAGATCCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR TCA 90 bp | GGCAATATAACATCCAACAGCCTACCAAGTTTGCAGAATAATACATaGAAGTTAAACATGGTACATCATGAAGGAAAATCATGGTCTCAT | + |
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Preference number: 1 (lower is better) Translates to: GNITSNSLPSLQNNT*KLNMVHHEGKSWSH Trigger: ATGAGACCATGATTTTCCTTCATGATGTACCATGTTTAACTTTCATGTATTATTCTGCAAACTTGGTAGGCTGTTGGATGTTATATTGCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR TCA 90 bp | GGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTGGGGGAAACTATTACTCCTAGGCCCCATCCCCAGCACTaGACACGAAGAATGGGCTTC | + |
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Preference number: 2 (lower is better) Translates to: GRSGPWAGLSLGETITPRPHPQH*TRRMGF Trigger: GAAGCCCATTCTTCGTGTTCAGTGCTGGGGATGGGG...CCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR GCA 90 bp | GGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTGGGGGAAACTATTACTCCTAGGCTCTCCCCAACCCACTaGTCTTCTGCCCTGAAAGAT | + |
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Preference number: 2 (lower is better) Translates to: GRSGPWAGLSLGETITPRLSPTH*SSALKD Trigger: ATCTTTCAGGGCAGAAGAGCAGTGGGTTGGGGAGAG...CCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR CCA 90 bp | GGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTGGGGGAAACTATTACTCCTAGGGGAGGGCAGAACAAATaGAAGCATTCCCCCACTCCA | + |
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Preference number: 2 (lower is better) Translates to: GRSGPWAGLSLGETITPRGGQNK*KHSPTP Trigger: TGGAGTGGGGGAATGCTTCCATTTGTTCTGCCCTCC...CCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR TCA 90 bp | GGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTGGGGGAAACTATTACTCCTAGGACTGCTCTTCTGCCCTaGAAGATGCACCGTTTCATT | + |
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Preference number: 2 (lower is better) Translates to: GRSGPWAGLSLGETITPRTALLP*KMHRFI Trigger: AATGAAACGGTGCATCTTTCAGGGCAGAAGAGCAGT...CCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR TCA 90 bp | GGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTGGGGGAAACTATTACTCCTAGGCAGCAGTTTGACTCCTaGCTTGCTGATCAAACACAT | + |
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Preference number: 2 (lower is better) Translates to: GRSGPWAGLSLGETITPRQQFDS*LADQTH Trigger: ATGTGTTTGATCAGCAAGTCAGGAGTCAAACTGCTG...CCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR CCA 90 bp | GGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTGGGGGAAACTATTACTCCTAGGACTGAACACGAAGAATaGGCTTCCTTCTGCATCAGT | + |
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Preference number: 2 (lower is better) Translates to: GRSGPWAGLSLGETITPRTEHEE*ASFCIS Trigger: ACTGATGCAGAAGGAAGCCCATTCTTCGTGTTCAGT...CCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR GCA 90 bp | CTGAGACATCTCACATTGCCCACTGTAAAGCACATGGGCAATATAACATCCAACCACAGTGCAAGAGACTaGGCAGGAGGTCTGCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: LRHLTLPTVKHMGNITSNHSARD*AGGLQS Trigger: GCTTTGCAGACCTCCTGCGCAGTCTCTTGCACTGTG...GTTGGATGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAGATGTCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR CCA 90 bp | TGCAGGTTTGTGTCCAAGGACAAAAAGTCCCATGCCACCAACTTCTGCTGTCACTTTATGCTAACATTCTaGGCAGTAAGGGAGGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: CRFVSKDKKSHATNFCCHFMLTF*AVREGR Trigger: TCTGCCCTCCCTTACTGCCCAGAATGTTAGCATAAA...GTGACAGCAGAAGTTGGTGGCATGGGACTTTTTGTCCTTGGACACAAACCTGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR TCA 90 bp | ATCTCTCCACTCATGTGTGGTATCTCCACTGAGGAAGAAGTGGTCCATGGGCTGAAACATGGTACATCATaGAGGAAAATCATGGTCTCA | + |
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Preference number: 2 (lower is better) Translates to: ISPLMCGISTEEEVVHGLKHGTS*RKIMVS Trigger: TGAGACCATGATTTTCCTTCATGATGTACCATGTTT...CAGCCCATGGACCACTTCTTCCTCAGTGGAGATACCACACATGAGTGGAGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR TCA 90 bp | TGTCCAAGGACAAAAAGTCCCATGCCACCAACTTCTGCTGTCACTTTCCAAAGACACCCACCTTCTCTTTaGAAGCAATGTAATACTAAT | + |
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Preference number: 2 (lower is better) Translates to: CPRTKSPMPPTSAVTFQRHPPSL*KQCNTN Trigger: ATTAGTATTACATTGCTTTCAAAGAGAAGGTGGGTG...TCTTTGGAAAGTGACAGCAGAAGTTGGTGGCATGGGACTTTTTGTCCTTGGACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR GCA 90 bp | TTTATGTCCAGGAAAAGATTTGACAAATTCAACAAACTGATACTGGGCCCCTCTGACTCTGCCTATGTGTaGAGCTTCTCAAATCATGTC | + |
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Preference number: 2 (lower is better) Translates to: FMSRKRFDKFNKLILGPSDSAYV*SFSNHV Trigger: GACATGATTTGAGAAGCTGCACACATAGGCAGAGTC...AGAGGGGCCCAGTATCAGTTTGTTGAATTTGTCAAATCTTTTCCTGGACATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR TCA 90 bp | TCATTTATGTCCAGGAAAAGATTTGACAAATTCAACAAACTGATACTGGGCCCCGTGAAGCAGCAACGATaGCTATCAATAATTTGGCAT | + |
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Preference number: 2 (lower is better) Translates to: SFMSRKRFDKFNKLILGPVKQQR*LSIIWH Trigger: ATGCCAAATTATTGATAGTCATCGTTGCTGCTTCAC...GGGGCCCAGTATCAGTTTGTTGAATTTGTCAAATCTTTTCCTGGACATAAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR GCA 90 bp | TTCCAAAGAGAAACAACAGCTGCTATTTTTATCAGCTTCCTGTGTTGTTTTATGGAATGGGCTTCCTTCTaGATCAGTCTCATACTAATG | + |
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Preference number: 2 (lower is better) Translates to: FQRETTAAIFISFLCCFMEWASF*ISLILM Trigger: CATTAGTATGAGACTGATGCAGAAGGAAGCCCATTC...CATAAAACAACACAGGAAGCTGATAAAAATAGCAGCTGTTGTTTCTCTTTGGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR CCA 90 bp | TTCATTCTGAGACATCTCACATTGCCCACTGTAAAGCACATGGGCAATATAACAGTAAAGGCGGATGTTTaGTTGTATAGTATTTTACAC | + |
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Preference number: 2 (lower is better) Translates to: FILRHLTLPTVKHMGNITVKADV*LYSILH Trigger: GTGTAAAATACTATACAACCAAACATCCGCCTTTAC...TGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAGATGTCTCAGAATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR GCA 72 bp | GTGATGGACACAGTGCAAGAGACTGCGCAGGAGGTCTaGAAAGCCATCTTCTCACACAGCATCACGACGGTG | + |
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Preference number: 3 (lower is better) Translates to: VMDTVQETAQEV*KAIFSHSITTV Trigger: CACCGTCGTGATGCTGTGTGAGAAGATGGCTTTGCAGACCTCCTGCGCAGTCTCTTGCACTGTGTCCATCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR GCA 72 bp | CCACTCCACTGGACCTTACCCCTCTCCCCAACCCACTaGTCTTCTGCCCTGAAAGATGCACCGTTTCATTCT | + |
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Preference number: 3 (lower is better) Translates to: PLHWTLPLSPTH*SSALKDAPFHS Trigger: AGAATGAAACGGTGCATCTTTCAGGGCAGAAGAGCAGTGGGTTGGGGAGAGGGGTAAGGTCCAGTGGAGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR CCA 72 bp | CTCCACTCATGTGTGGTATCTCCACTGAGGAAGAAGTaGTCCATGGGCTGGGCTGTCCTTGGGGGAAACTAT | + |
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Preference number: 3 (lower is better) Translates to: LHSCVVSPLRKK*SMGWAVLGGNY Trigger: ATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCCTCAGTGGAGATACCACACATGAGTGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR CCA 72 bp | ACTGAGGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTaGGGGAAACTATTACTCCTAGGATCTGCAGGTTTG | + |
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Preference number: 3 (lower is better) Translates to: TEEEVVHGLGCP*GKLLLLGSAGL Trigger: CAAACCTGCAGATCCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCCTCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR GCA 72 bp | GGGCTGTCCTTGGGGGAAACTATTACTCCTAGGATCTaGAGGTTTGTGTCCAAGGACAAAAAGTCCCATGCC | + |
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Preference number: 3 (lower is better) Translates to: GLSLGETITPRI*RFVSKDKKSHA Trigger: GGCATGGGACTTTTTGTCCTTGGACACAAACCTGCAGATCCTAGGAGTAATAGTTTCCCCCAAGGACAGCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR CAA 90 bp | ATCTCTCCACTCATGTGTGGTATCTCCACTGAGGAAGAAGTGGTCCATGGGCTGCAACCATACAAAAGTTaGCTCCCATCTTTAAATGCA | + |
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Preference number: 3 (lower is better) Translates to: ISPLMCGISTEEEVVHGLQPYKS*LPSLNA Trigger: TGCATTTAAAGATGGGAGCAAACTTTTGTATGGTTG...CAGCCCATGGACCACTTCTTCCTCAGTGGAGATACCACACATGAGTGGAGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR CAA 90 bp | TTTATGTCCAGGAAAAGATTTGACAAATTCAACAAACTGATACTGGGCCCCTCTTGCACAGTTTCTTCATaGGCCCCAGAAGTGCTGATT | + |
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Preference number: 3 (lower is better) Translates to: FMSRKRFDKFNKLILGPSCTVSS*APEVLI Trigger: AATCAGCACTTCTGGGGCCAATGAAGAAACTGTGCA...AGAGGGGCCCAGTATCAGTTTGTTGAATTTGTCAAATCTTTTCCTGGACATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR-3UTR CAA 90 bp | TTCATTCTGAGACATCTCACATTGCCCACTGTAAAGCACATGGGCAATATAACAAAGGCGGATGTTTGGTaGTATAGTATTTTACACTGT | + |
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Preference number: 3 (lower is better) Translates to: FILRHLTLPTVKHMGNITKADVW*YSILHC Trigger: ACAGTGTAAAATACTATACAACCAAACATCCGCCTT...TGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAGATGTCTCAGAATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR TCA 72 bp | TTATGTCCAGGAAAAGATTTGACAAATTCAACAAACTaGTACTGGGCCCCTCTTTACAATCCAATAGCAATG | + |
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Preference number: 3 (lower is better) Translates to: LCPGKDLTNSTN*YWAPLYNPIAM Trigger: CATTGCTATTGGATTGTAAAGAGGGGCCCAGTATCAGTTTGTTGAATTTGTCAAATCTTTTCCTGGACATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR TCA 72 bp | ACATCCAACAGCCTACCAAGTTTGCAGAATAATACATaGAAGTTAAACATGGTACATCATGAAGGAAAATCA | + |
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Preference number: 3 (lower is better) Translates to: TSNSLPSLQNNT*KLNMVHHEGKS Trigger: TGATTTTCCTTCATGATGTACCATGTTTAACTTTCATGTATTATTCTGCAAACTTGGTAGGCTGTTGGATGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR TCA 90 bp | CTCACATTGCCCACTGTAAAGCACATGGGCAATATAACATCCAACAGCCTACCACTGCTGGGGAAGAACTaGCTGCAGTGGGGCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: LTLPTVKHMGNITSNSLPLLGKN*LQWGWE Trigger: CTCCCAGCCCCACTGCAGTCAGTTCTTCCCCAGCAG...TGGTAGGCTGTTGGATGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR CCA 90 bp | TTCATTCTGAGACATCTCACATTGCCCACTGTAAAGCACATGGGCAATATAACAAGCAGGGGTGGGAGCTaGAGCCTGGGCCGCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: FILRHLTLPTVKHMGNITSRGGS*SLGRSH Trigger: GTGGCTGCGGCCCAGGCTCCAGCTCCCACCCCTGCT...TGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAGATGTCTCAGAATGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR GCA 90 bp | GGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTGGGGGAAACTATTACTCCTAGGCACTGCTGTGGTCACTaGTTTGGGTTTTGTCACCAT | + |
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Preference number: 4 (lower is better) Translates to: GRSGPWAGLSLGETITPRHCCGH*FGFCHH Trigger: ATGGTGACAAAACCCAAAGCAGTGACCACAGCAGTG...CCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR CCA 90 bp | GGAAGAAGTGGTCCATGGGCTGGGCTGTCCTTGGGGGAAACTATTACTCCTAGGAAAAATTCAAGGGGGTaGCCTCCAGAAGTGGTTGTT | + |
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Preference number: 4 (lower is better) Translates to: GRSGPWAGLSLGETITPRKNSRG*PPEVVV Trigger: AACAACCACTTCTGGAGGCCACCCCCTTGAATTTTT...CCTAGGAGTAATAGTTTCCCCCAAGGACAGCCCAGCCCATGGACCACTTCTTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR TCA 90 bp | CTCACATTGCCCACTGTAAAGCACATGGGCAATATAACATCCAACAGCCTACCAGGTCGATGTCGATCTTaGAGGTCTGCTGCTGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: LTLPTVKHMGNITSNSLPGRCRS*RSAAEG Trigger: CCCTTCAGCAGCAGACCTTCAAGATCGACATCGACC...TGGTAGGCTGTTGGATGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR GCA 90 bp | TTCATTCTGAGACATCTCACATTGCCCACTGTAAAGCACATGGGCAATATAACACTGGGCCGCAGCCACTaGTGGGGAAGAACTGACTGC | + |
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Preference number: 4 (lower is better) Translates to: FILRHLTLPTVKHMGNITLGRSH*WGRTDC Trigger: GCAGTCAGTTCTTCCCCAGCAGTGGCTGCGGCCCAG...TGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAGATGTCTCAGAATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR GCA 90 bp | CTGAGACATCTCACATTGCCCACTGTAAAGCACATGGGCAATATAACATCCAACCCCACTTCCAGCTTCTaGAATTCCTCCACCGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: LRHLTLPTVKHMGNITSNPTSSF*NSSTAS Trigger: GGAGGCGGTGGAGGAATTGCAGAAGCTGGAAGTGGG...GTTGGATGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAGATGTCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR TCA 90 bp | CTGAGACATCTCACATTGCCCACTGTAAAGCACATGGGCAATATAACATCCAACATTTGCTGCAGCAGCTaGGGGTTCTCCCGACCTATC | + |
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Preference number: 4 (lower is better) Translates to: LRHLTLPTVKHMGNITSNICCSS*GFSRPI Trigger: GATAGGTCGGGAGAACCCTCAGCTGCTGCAGCAAAT...GTTGGATGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAGATGTCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR CCA 90 bp | TTCATTCTGAGACATCTCACATTGCCCACTGTAAAGCACATGGGCAATATAACAGGCCGCAGCCACTGCTaGGGAAGAACTGACTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: FILRHLTLPTVKHMGNITGRSHC*GRTDCS Trigger: ACTGCAGTCAGTTCTTCCCCAGCAGTGGCTGCGGCC...TGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAGATGTCTCAGAATGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| 3UTR CAA 72 bp | CCTTGGGGGAAACTATTACTCCTAGGATCTGCAGGTTaGTGTCCAAGGACAAAAAGTCCCATGCCACCAACT | + |
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Preference number: 4 (lower is better) Translates to: PWGKLLLLGSAG*CPRTKSPMPPT Trigger: AGTTGGTGGCATGGGACTTTTTGTCCTTGGACACAAACCTGCAGATCCTAGGAGTAATAGTTTCCCCCAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR GCA 90 bp | TTCATTCTGAGACATCTCACATTGCCCACTGTAAAGCACATGGGCAATATAACATGCTGTCGTGGTTGCTaGAGCTGCAGCTACTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: FILRHLTLPTVKHMGNITCCRGC*SCSYCW Trigger: CCAGCAGTAGCTGCAGCTGCAGCAACCACGACAGCA...TGTTATATTGCCCATGTGCTTTACAGTGGGCAATGTGAGATGTCTCAGAATGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR TCA 90 bp | TTCCAAAGAGAAACAACAGCTGCTATTTTTATCAGCTTCCTGTGTTGTTTTATGGCAGGTTTCTCAGGCTaGGTGGCACCAGCAGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: FQRETTAAIFISFLCCFMAGFSG*VAPAGA Trigger: CGCACCTGCTGGTGCCACTCAGCCTGAGAAACCTGC...CATAAAACAACACAGGAAGCTGATAAAAATAGCAGCTGTTGTTTCTCTTTGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR GCA 90 bp | TCATTTATGTCCAGGAAAAGATTTGACAAATTCAACAAACTGATACTGGGCCCCAGTGGCACCAGCAGGTaGGGGTTCAGAAGAGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: SFMSRKRFDKFNKLILGPSGTSR*GFRRGC Trigger: ACAGCCTCTTCTGAACCCGCACCTGCTGGTGCCACT...GGGGCCCAGTATCAGTTTGTTGAATTTGTCAAATCTTTTCCTGGACATAAATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR GCA 90 bp | TTTATGTCCAGGAAAAGATTTGACAAATTCAACAAACTGATACTGGGCCCCTCTAGTTGCTGTCGTGGTTaGTGCAGCTGCAGCTACTGC | + |
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Preference number: 4 (lower is better) Translates to: FMSRKRFDKFNKLILGPSSCCRG*CSCSYC Trigger: GCAGTAGCTGCAGCTGCAGCAACCACGACAGCAACT...AGAGGGGCCCAGTATCAGTTTGTTGAATTTGTCAAATCTTTTCCTGGACATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR CCA 90 bp | TCATTTATGTCCAGGAAAAGATTTGACAAATTCAACAAACTGATACTGGGCCCCGGAGTACTTGATGGCTaGGTTGTAGCTGGCACTGCT | + |
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Preference number: 4 (lower is better) Translates to: SFMSRKRFDKFNKLILGPGVLDG*VVAGTA Trigger: AGCAGTGCCAGCTACAACCCAGCCATCAAGTACTCC...GGGGCCCAGTATCAGTTTGTTGAATTTGTCAAATCTTTTCCTGGACATAAATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR GCA 90 bp | TTCCAAAGAGAAACAACAGCTGCTATTTTTATCAGCTTCCTGTGTTGTTTTATGCTGGGCTGGCTTTTCTaGAGGTTTCTCAGGCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: FQRETTAAIFISFLCCFMLGWLF*RFLRLS Trigger: ACTCAGCCTGAGAAACCTGCAGAAAAGCCAGCCCAG...CATAAAACAACACAGGAAGCTGATAAAAATAGCAGCTGTTGTTTCTCTTTGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR GCA 90 bp | TTCCAAAGAGAAACAACAGCTGCTATTTTTATCAGCTTCCTGTGTTGTTTTATGCTCCTCCACCTTGACTaGCTGCTTCCTGAACTGGTT | + |
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Preference number: 4 (lower is better) Translates to: FQRETTAAIFISFLCCFMLLHLD*LLPELV Trigger: AACCAGTTCAGGAAGCAGGCAGTCAAGGTGGAGGAG...CATAAAACAACACAGGAAGCTGATAAAAATAGCAGCTGTTGTTTCTCTTTGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR CCA 90 bp | TTCCAAAGAGAAACAACAGCTGCTATTTTTATCAGCTTCCTGTGTTGTTTTATGGCCTGCTTCCTGAACTaGTTCATTCAGCATCTGAAT | + |
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Preference number: 4 (lower is better) Translates to: FQRETTAAIFISFLCCFMACFLN*FIQHLN Trigger: ATTCAGATGCTGAATGAACCAGTTCAGGAAGCAGGC...CATAAAACAACACAGGAAGCTGATAAAAATAGCAGCTGTTGTTTCTCTTTGGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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| CDS-3UTR CAA 90 bp | TTCCAAAGAGAAACAACAGCTGCTATTTTTATCAGCTTCCTGTGTTGTTTTATGACCACCTCCTCCACCTaGACTGCCTGCTTCCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: FQRETTAAIFISFLCCFMTTSST*TACFLN Trigger: GTTCAGGAAGCAGGCAGTCAAGGTGGAGGAGGTGGT...CATAAAACAACACAGGAAGCTGATAAAAATAGCAGCTGTTGTTTCTCTTTGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030134.9 |
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