Pregenerated sensors for RAD23A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003813Ensembl transcript IDs: ENSMUST00000003911.13, ENSMUST00000109761.9, ENSMUST00000128035.2, ENSMUST00000144675.8
Found 137 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGCCACAAATGATTGAAAACTGGCGAAAGCAGAAGCGAGAACGCTaGGAGAAAATTCAGGCTGACAAGGAGCGGAGGGCCCGGTTACAG | + |
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Preference number: 1 (lower is better) Translates to: MPQMIENWRKQKRER*EKIQADKERRARLQ Trigger: CTGTAACCGGGCCCTCCGCTCCTTGTCAGCCTGAATTTTCTCCCAGCGTTCTCGCTTCTGCTTTCGCCAGTTTTCAATCATTTGTGGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR TCA 90 bp | ACAGGGAGCAGCGTATCGCAGAGTGCATGGCCAAGATGCCACAAATaGTTGAAAACTGGCGAAAGCAGAAGCGAGAACGCTGGGAGAAAA | + |
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Preference number: 1 (lower is better) Translates to: TGSSVSQSAWPRCHK*LKTGESRSENAGRK Trigger: TTTTCTCCCAGCGTTCTCGCTTCTGCTTTCGCCAGTTTTCAATCATTTGTGGCATCTTGGCCATGCACTCTGCGATACGCTGCTCCCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR GCA 90 bp | CCCTCACTGTCTGCTTTCCTATACAGGGAGCAGCGTATCGCAGAGTaGATGGCCAAGATGCCACAAATGATTGAAAACTGGCGAAAGCAG | + |
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Preference number: 1 (lower is better) Translates to: PSLSAFLYREQRIAE*MAKMPQMIENWRKQ Trigger: CTGCTTTCGCCAGTTTTCAATCATTTGTGGCATCTTGGCCATGCACTCTGCGATACGCTGCTCCCTGTATAGGAAAGCAGACAGTGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR TCA 90 bp | GGAGCAGCGTATCGCAGAGTGCATGGCCAAGATGCCACAAATGATTaGAAACTGGCGAAAGCAGAAGCGAGAACGCTGGGAGAAAATTCA | + |
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Preference number: 1 (lower is better) Translates to: GAAYRRVHGQDATND*KLAKAEARTLGENS Trigger: TGAATTTTCTCCCAGCGTTCTCGCTTCTGCTTTCGCCAGTTTTCAATCATTTGTGGCATCTTGGCCATGCACTCTGCGATACGCTGCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR CCA 90 bp | CGTATCGCAGAGTGCATGGCCAAGATGCCACAAATGATTGAAAACTaGCGAAAGCAGAAGCGAGAACGCTGGGAGAAAATTCAGGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: RIAECMAKMPQMIEN*RKQKRERWEKIQAD Trigger: GTCAGCCTGAATTTTCTCCCAGCGTTCTCGCTTCTGCTTTCGCCAGTTTTCAATCATTTGTGGCATCTTGGCCATGCACTCTGCGATACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR-3UTR TCA 90 bp | CACTGTCTGCTTTCCTATACAGGGAGCAGCGTATCGCAGAGTGCATGGCCAAGAGGCCCGGTTACAGGCTaGGGCCCAGGAACGCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: HCLLSYTGSSVSQSAWPRGPVTG*GPGTPG Trigger: CCCAGGCGTTCCTGGGCCTCAGCCTGTAACCGGGCC...TCTTGGCCATGCACTCTGCGATACGCTGCTCCCTGTATAGGAAAGCAGACAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR-3UTR CCA 90 bp | GGGTGGCCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAGGGATGCTTCAGGGATaGGGAAGCAGGCAGGCGCCC | + |
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Preference number: 2 (lower is better) Translates to: GWPWPSELMITPFPGWRPGMLQG*GSRQAP Trigger: GGGCGCCTGCCTGCTTCCCCATCCCTGAAGCATCCC...TGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGGCCACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | AGCAGAAGCGAGAACGCTGGGAGAAAATTCAGGCTGACAAGGAGCGGAGGGCCCGCCTGGGCTACCACGTaGACCCAAGGAGTGCTCGCT | + |
|
Preference number: 2 (lower is better) Translates to: SRSENAGRKFRLTRSGGPAWATT*TQGVLA Trigger: AGCGAGCACTCCTTGGGTCCACGTGGTAGCCCAGGC...GGGCCCTCCGCTCCTTGTCAGCCTGAATTTTCTCCCAGCGTTCTCGCTTCTGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR-3UTR GCA 90 bp | GTGGCCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAAGGCCCCTCCATCTGGCTaGAGGGAGCTGGGACAGAGG | + |
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Preference number: 2 (lower is better) Translates to: VALAFRTDDNPFSRLEAKAPPSG*RELGQR Trigger: CCTCTGTCCCAGCTCCCTGCAGCCAGATGGAGGGGC...CTTGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGGCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | TGGTGGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGGCGCCACTTCAGGAGGGTaGGAAGCTGGGCTGGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: WWRKEGCPWGCFRDGEAGATSGG*EAGLGF Trigger: AAAACCCAGCCCAGCTTCCCACCCTCCTGAAGTGGC...GCCTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCCACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | AAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAAGGAGGGTTGTCCTTGGGATGCTTCAGGGATaGGGAAGCAGGCAGGCGCCC | + |
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Preference number: 2 (lower is better) Translates to: KLRAPASPHHGGGRRVVLGMLQG*GSRQAP Trigger: GGGCGCCTGCCTGCTTCCCCATCCCTGAAGCATCCC...AAGGACAACCCTCCTTCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | TCAGCATGCCCACTTCACCTGTGCCCCCGGCTAGCTCAGACTCACAAACAGCTGGTCCTGGGGAAGGGGTaGCCTTGGCCTTCAGAACTG | + |
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Preference number: 2 (lower is better) Translates to: SACPLHLCPRLAQTHKQLVLGKG*PWPSEL Trigger: CAGTTCTGAAGGCCAAGGCCACCCCTTCCCCAGGAC...CAGCTGTTTGTGAGTCTGAGCTAGCCGGGGGCACAGGTGAAGTGGGCATGCTGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| 3UTR-3UTR TCA 90 bp | AGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAAGGAGGGTTGTCCTTGGGGATCAGGTCTTCTCGGACTaGTATGGGAATGGGGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: RAPASPHHGGGRRVVLGDQVFSD*YGNGGH Trigger: GTGGCCCCCATTCCCATATCAGTCCGAGAAGACCTG...ATCCCCAAGGACAACCCTCCTTCCTCCACCATGATGAGGGGAAGCTGGAGCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | GCTCCTAGGCTCCTCCCCGTTTCTCAGCATGCCCACTTCACCTGTGCCCCCGGCCCAGATGGAAAGATCTaGGCCACTCCAATAGAGGAT | + |
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Preference number: 2 (lower is better) Translates to: APRLLPVSQHAHFTCAPGPDGKI*ATPIED Trigger: ATCCTCTATTGGAGTGGCCCAGATCTTTCCATCTGG...GCCGGGGGCACAGGTGAAGTGGGCATGCTGAGAAACGGGGAGGAGCCTAGGAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| 3UTR-3UTR CCA 90 bp | ACTCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGAGGCGCCCCTCCATCTaGCTGCAGGGAGCTGGGACA | + |
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Preference number: 2 (lower is better) Translates to: TPIEDQSLGLQLPLIMVERRPSI*LQGAGT Trigger: TGTCCCAGCTCCCTGCAGCCAGATGGAGGGGCGCCT...CTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR GCA 90 bp | ACTCCAGATGGAAAGATCTGGGCCACTCCAATAGAGGATCAAAGCTTAGGGCTCGCCCCTCCATCTGGCTaGAGGGAGCTGGGACAGAGG | + |
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Preference number: 2 (lower is better) Translates to: TPDGKIWATPIEDQSLGLAPPSG*RELGQR Trigger: CCTCTGTCCCAGCTCCCTGCAGCCAGATGGAGGGGC...GAGCCCTAAGCTTTGATCCTCTATTGGAGTGGCCCAGATCTTTCCATCTGGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | CCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAAGGCCAGCCACTTCAGGAGGGTaGGAAGCTGGGCTGGGTTTT | + |
|
Preference number: 2 (lower is better) Translates to: PWPSELMITPFPGWRPRPATSGG*EAGLGF Trigger: AAAACCCAGCCCAGCTTCCCACCCTCCTGAAGTGGC...TGGCCTTGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | GGGTGGCCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAGGACTGATATGGGAATaGGGGCCACTTCAGGAGGGT | + |
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Preference number: 2 (lower is better) Translates to: GWPWPSELMITPFPGWRPGLIWE*GPLQEG Trigger: ACCCTCCTGAAGTGGCCCCCATTCCCATATCAGTCC...TGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGGCCACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR GCA 90 bp | GGTCTGCCCTCACTGTCTGCTTTCCTATACAGGGAGCAGCGTATCGCAGAGTGCCGTGGACCCAAGGAGTaGTCGCTTCCAGGAACTATT | + |
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Preference number: 2 (lower is better) Translates to: GLPSLSAFLYREQRIAECRGPKE*SLPGTI Trigger: AATAGTTCCTGGAAGCGAGCACTCCTTGGGTCCACG...GCACTCTGCGATACGCTGCTCCCTGTATAGGAAAGCAGACAGTGAGGGCAGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR-3UTR CCA 90 bp | CCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAAGGCCAGACTGGAAGGAGGGTTGTCCTTaGGGATGCTTCAGGGATGGG | + |
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Preference number: 2 (lower is better) Translates to: PSELMITPFPGWRPRPDWKEGCP*GCFRDG Trigger: CCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTT...CCAGTCTGGCCTTGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | CAGCGTATCGCAGAGTGCATGGCCAAGATGCCACAAATGATTGAAAACTGGCGAAGGCCCAGGAACGCCTaGGCTACCACGTGGACCCAA | + |
|
Preference number: 2 (lower is better) Translates to: QRIAECMAKMPQMIENWRRPRNA*ATTWTQ Trigger: TTGGGTCCACGTGGTAGCCCAGGCGTTCCTGGGCCT...TCGCCAGTTTTCAATCATTTGTGGCATCTTGGCCATGCACTCTGCGATACGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR-3UTR GCA 90 bp | CATGGTGGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGGTCGCCTCATGGTCTTaGCAACAACTTTTGAGTAGG | + |
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Preference number: 2 (lower is better) Translates to: HGGGRRVVLGDASGMGKQVASWS*QQLLSR Trigger: CCTACTCAAAAGTTGTTGGCAAGACCATGAGGCGAC...CTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCCACCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGGGGAGGCGCCCCTCCATCTaGCTGCAGGGAGCTGGGACA | + |
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Preference number: 2 (lower is better) Translates to: LYSRQNLYQRCGSVLGKGRRPSI*LQGAGT Trigger: TGTCCCAGCTCCCTGCAGCCAGATGGAGGGGCGCCT...CCCCTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR GCA 90 bp | TCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAGGTTGTCCTTGGGGATaGTTCAGGGATGGGGAAGCA | + |
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Preference number: 2 (lower is better) Translates to: SNRGSKLRAPASPHHGGGGCPWG*FRDGEA Trigger: TGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACC...TCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | GCCAGACTGGGGAGAAGGCCTTTGGCTTCTAACATAGACTTACTCCAGATGGAAAAGGAGGGTTGTCCTTaGGGATGCTTCAGGGATGGG | + |
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Preference number: 2 (lower is better) Translates to: ARLGRRPLASNIDLLQMEKEGCP*GCFRDG Trigger: CCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTT...TTCCATCTGGAGTAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAGTCTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | CTGGAGGCCAAGGCCAGACTGGGGAGAAGGCCTTTGGCTTCTAACATAGACTTACCATCTGTCGCCTCATaGTCTTGCCAACAACTTTTG | + |
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Preference number: 2 (lower is better) Translates to: LEAKARLGRRPLASNIDLPSVAS*SCQQLL Trigger: CAAAAGTTGTTGGCAAGACCATGAGGCGACAGATGG...TAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAGTCTGGCCTTGGCCTCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR GCA 90 bp | GAAATTCAGATTTGCCTTGGTCTGCCCTCACTGTCTGCTTTCCTATACAGGGAGCAGCGTATCGCAGAGTaGATGGCCAAGATGCCACAA | + |
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Preference number: 2 (lower is better) Translates to: EIQICLGLPSLSAFLYREQRIAE*MAKMPQ Trigger: TTGTGGCATCTTGGCCATGCACTCTGCGATACGCTG...CTCCCTGTATAGGAAAGCAGACAGTGAGGGCAGACCAAGGCAAATCTGAATTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR-3UTR CCA 90 bp | GCCAGACTGGGGAGAAGGCCTTTGGCTTCTAACATAGACTTACTCCAGATGGAATCTTATAAACGTCTGTaGAGTGGGGAGGGAGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: ARLGRRPLASNIDLLQMESYKRL*SGEGGK Trigger: CTTCCCTCCCTCCCCACTCCACAGACGTTTATAAGA...TTCCATCTGGAGTAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAGTCTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | ACTCCAGATGGAAAGATCTGGGCCACTCCAATAGAGGATCAAAGCTTAGGGCTCTCTTATAAACGTCTGTaGAGTGGGGAGGGAGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: TPDGKIWATPIEDQSLGLSYKRL*SGEGGK Trigger: CTTCCCTCCCTCCCCACTCCACAGACGTTTATAAGA...GAGCCCTAAGCTTTGATCCTCTATTGGAGTGGCCCAGATCTTTCCATCTGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | ACTCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGCCATCTGTCGCCTCATaGTCTTGCCAACAACTTTTG | + |
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Preference number: 2 (lower is better) Translates to: TPIEDQSLGLQLPLIMVEPSVAS*SCQQLL Trigger: CAAAAGTTGTTGGCAAGACCATGAGGCGACAGATGG...CTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR TCA 90 bp | AAACTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGCAGGTCTTCTCGGACTaGTATGGGAATGGGGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: KLYSRQNLYQRCGSVLGKQVFSD*YGNGGH Trigger: GTGGCCCCCATTCCCATATCAGTCCGAGAAGACCTG...CTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CCA 90 bp | AGAGTGGTTTTACTAAACAGCTGGGTGAAATTCAGATTTGCCTTGGTCTGCCCTCAAATGATTGAAAACTaGCGAAAGCAGAAGCGAGAA | + |
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Preference number: 2 (lower is better) Translates to: RVVLLNSWVKFRFALVCPQMIEN*RKQKRE Trigger: TTCTCGCTTCTGCTTTCGCCAGTTTTCAATCATTTG...AGGGCAGACCAAGGCAAATCTGAATTTCACCCAGCTGTTTAGTAAAACCACTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR CCA 72 bp | GGAGGGCCCGGTTACAGGCTGAGGCCCAGGAACGCCTaGGCTACCACGTGGACCCAAGGAGTGCTCGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: GGPGYRLRPRNA*ATTWTQGVLAS Trigger: GGAAGCGAGCACTCCTTGGGTCCACGTGGTAGCCCAGGCGTTCCTGGGCCTCAGCCTGTAACCGGGCCCTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR CCA 72 bp | GAGGCAGGGGCCCAAGTTTCCAGAGGGAGGAGATGCTaGGGCCCGTCTGTAAGGCTCCTAGGCTCCTCCCCG | + |
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Preference number: 3 (lower is better) Translates to: EAGAQVSRGRRC*GPSVRLLGSSP Trigger: CGGGGAGGAGCCTAGGAGCCTTACAGACGGGCCCCAGCATCTCCTCCCTCTGGAAACTTGGGCCCCTGCCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| 3UTR CCA 72 bp | GGACAGCTGTCTGGCCCAGGTCTTCTCGGACTGATATaGGAATGGGGGCCACTTCAGGAGGGTGGGAAGCTG | + |
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Preference number: 3 (lower is better) Translates to: GQLSGPGLLGLI*EWGPLQEGGKL Trigger: CAGCTTCCCACCCTCCTGAAGTGGCCCCCATTCCCATATCAGTCCGAGAAGACCTGGGCCAGACAGCTGTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR CCA 72 bp | TTCCCCTCATCATGGTGGAGGAAGGAGGGTTGTCCTTaGGGATGCTTCAGGGATGGGGAAGCAGGCAGGCGC | + |
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Preference number: 3 (lower is better) Translates to: FPSSWWRKEGCP*GCFRDGEAGRR Trigger: GCGCCTGCCTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCCACCATGATGAGGGGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR-3UTR CAA 90 bp | GGCCCGTCTGTAAGGCTCCTAGGCTCCTCCCCGTTTCTCAGCATGCCCACTTCAGGGGAAGGGGTGGCCTaGGCCTTCAGAACTGATGAT | + |
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Preference number: 3 (lower is better) Translates to: GPSVRLLGSSPFLSMPTSGEGVA*AFRTDD Trigger: ATCATCAGTTCTGAAGGCCAAGGCCACCCCTTCCCC...TGAAGTGGGCATGCTGAGAAACGGGGAGGAGCCTAGGAGCCTTACAGACGGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| 3UTR CCA 72 bp | GGGACAGAGGCCAAGAGGGGCCCATCTGTCGCCTCATaGTCTTGCCAACAACTTTTGAGTAGGCTGGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: GTEAKRGPSVAS*SCQQLLSRLGC Trigger: ACAGCCCAGCCTACTCAAAAGTTGTTGGCAAGACCATGAGGCGACAGATGGGCCCCTCTTGGCCTCTGTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| 3UTR TCA 72 bp | ATGATAGAAGGAGCAGCAGTCCTTCTAGGGTTGAGCTaGGGCAGGGGCCCAAGTTTCCAGAGGGAGGAGATG | + |
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Preference number: 3 (lower is better) Translates to: MIEGAAVLLGLS*GRGPSFQREEM Trigger: CATCTCCTCCCTCTGGAAACTTGGGCCCCTGCCTCAGCTCAACCCTAGAAGGACTGCTGCTCCTTCTATCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| 3UTR-3UTR CAA 90 bp | TCAGCATGCCCACTTCACCTGTGCCCCCGGCTAGCTCAGACTCACAAACAGCTGCTGGGGAGAAGGCCTTaGGCTTCTAACATAGACTTA | + |
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Preference number: 3 (lower is better) Translates to: SACPLHLCPRLAQTHKQLLGRRP*ASNIDL Trigger: TAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAG...CAGCTGTTTGTGAGTCTGAGCTAGCCGGGGGCACAGGTGAAGTGGGCATGCTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| 3UTR CCA 72 bp | ATGATTGAAAACTGGCGAAAGCAGAAGCGAGAACGCTaGGAGAAAATTCAGGCTGACAAGGAGCGGAGGGCC | + |
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Preference number: 3 (lower is better) Translates to: MIENWRKQKRER*EKIQADKERRA Trigger: GGCCCTCCGCTCCTTGTCAGCCTGAATTTTCTCCCAGCGTTCTCGCTTCTGCTTTCGCCAGTTTTCAATCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR TCA 72 bp | TATCGCAGAGTGCATGGCCAAGATGCCACAAATGATTaGAAACTGGCGAAAGCAGAAGCGAGAACGCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: YRRVHGQDATND*KLAKAEARTLG Trigger: TCCCAGCGTTCTCGCTTCTGCTTTCGCCAGTTTTCAATCATTTGTGGCATCTTGGCCATGCACTCTGCGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR GCA 72 bp | TTAGCCAATTACCAGGGGGAGTACAGCCAAACAGACTaGATGATAGAAGGAGCAGCAGTCCTTCTAGGGTTG | + |
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Preference number: 3 (lower is better) Translates to: LANYQGEYSQTD*MIEGAAVLLGL Trigger: CAACCCTAGAAGGACTGCTGCTCCTTCTATCATGCAGTCTGTTTGGCTGTACTCCCCCTGGTAATTGGCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| 3UTR GCA 72 bp | CTAAACAGCTGGGTGAAATTCAGATTTGCCTTGGTCTaGCCTCACTGTCTGCTTTCCTATACAGGGAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: LNSWVKFRFALV*PHCLLSYTGSS Trigger: GCTGCTCCCTGTATAGGAAAGCAGACAGTGAGGGCAGACCAAGGCAAATCTGAATTTCACCCAGCTGTTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR GCA 72 bp | TCTGCTTTCCTATACAGGGAGCAGCGTATCGCAGAGTaGATGGCCAAGATGCCACAAATGATTGAAAACTGG | + |
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Preference number: 3 (lower is better) Translates to: SAFLYREQRIAE*MAKMPQMIENW Trigger: CCAGTTTTCAATCATTTGTGGCATCTTGGCCATGCACTCTGCGATACGCTGCTCCCTGTATAGGAAAGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR CCA 72 bp | GAGTGCATGGCCAAGATGCCACAAATGATTGAAAACTaGCGAAAGCAGAAGCGAGAACGCTGGGAGAAAATT | + |
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Preference number: 3 (lower is better) Translates to: ECMAKMPQMIEN*RKQKRERWEKI Trigger: AATTTTCTCCCAGCGTTCTCGCTTCTGCTTTCGCCAGTTTTCAATCATTTGTGGCATCTTGGCCATGCACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| 3UTR-3UTR CAA 90 bp | ACTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGGGCTGGGGAGAAGGCCTTaGGCTTCTAACATAGACTTA | + |
|
Preference number: 3 (lower is better) Translates to: TLFTSKPLSEMWFCPGEGLGRRP*ASNIDL Trigger: TAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAG...CCCTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR GCA 90 bp | AGGCCCAGGAACGCCTGGGCTACCACGTGGACCCAAGGAGTGCTCGCTTCCAGGGGGGTTCTCCCCTGCTaGTTCTGTGGCCGGCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: RPRNAWATTWTQGVLASRGVLPC*FCGRLL Trigger: GAGCAGCCGGCCACAGAAGCAGCAGGGGAGAACCCC...CCTGGAAGCGAGCACTCCTTGGGTCCACGTGGTAGCCCAGGCGTTCCTGGGCCT 67% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
||
| CDS-3UTR GCA 90 bp | GGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGGCAGGCGGGGTTCTCCCCTGCTaGTTCTGTGGCCGGCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: GGRRVVLGDASGMGKQAGGVLPC*FCGRLL Trigger: GAGCAGCCGGCCACAGAAGCAGCAGGGGAGAACCCC...GCCTGCCTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | AAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAAGGAGGGTTGTCCTTCGGGACAGCAGTGGGTaGGGCCTCTGGGGGTGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: KLRAPASPHHGGGRRVVLRDSSG*GLWGCR Trigger: CCGGCACCCCCAGAGGCCTCACCCACTGCTGTCCCG...AAGGACAACCCTCCTTCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | AGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAAGGAGGGTTGTCCTTGGGGATTCTCCCCTGCTTCTGTaGCCGGCTGCTCAGGCGCCT | + |
|
Preference number: 4 (lower is better) Translates to: RAPASPHHGGGRRVVLGDSPLLL*PAAQAP Trigger: AGGCGCCTGAGCAGCCGGCCACAGAAGCAGGGGAGA...ATCCCCAAGGACAACCCTCCTTCCTCCACCATGATGAGGGGAAGCTGGAGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
||
| CDS-3UTR TCA 90 bp | GGCCCGTCTGTAAGGCTCCTAGGCTCCTCCCCGTTTCTCAGCATGCCCACTTCACGCATGTTCTGGAACTaGGGCTGGTCCCGCAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: GPSVRLLGSSPFLSMPTSRMFWN*GWSRRN Trigger: GTTCCTGCGGGACCAGCCTCAGTTCCAGAACATGCG...TGAAGTGGGCATGCTGAGAAACGGGGAGGAGCCTAGGAGCCTTACAGACGGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
||
| CDS-3UTR TCA 90 bp | AGGCTGAGGCCCAGGAACGCCTGGGCTACCACGTGGACCCAAGGAGTGCTCGCTAGCGCTGGGTTCTGTTaGATCACTTGCCGCATGTTC | + |
|
Preference number: 4 (lower is better) Translates to: RLRPRNAWATTWTQGVLASAGFC*ITCRMF Trigger: GAACATGCGGCAAGTGATTCAACAGAACCCAGCGCT...AGCGAGCACTCCTTGGGTCCACGTGGTAGCCCAGGCGTTCCTGGGCCTCAGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
||
| CDS-3UTR CCA 90 bp | GGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGGCAGGCGGCGCCTGGCTTTCCTaGACAGAACCATGTTCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: GGRRVVLGDASGMGKQAGGAWLS*TEPCSG Trigger: GCCTGAACATGGTTCTGTCCAGGAAAGCCAGGCGCC...GCCTGCCTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | GCTCCTAGGCTCCTCCCCGTTTCTCAGCATGCCCACTTCACCTGTGCCCCCGGCAGCAGGCAGGAGCGCTaGGTTCTGTTGAATCACTTG | + |
|
Preference number: 4 (lower is better) Translates to: APRLLPVSQHAHFTCAPGSRQER*VLLNHL Trigger: CAAGTGATTCAACAGAACCCAGCGCTCCTGCCTGCT...GCCGGGGGCACAGGTGAAGTGGGCATGCTGAGAAACGGGGAGGAGCCTAGGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
||
| CDS-3UTR TCA 90 bp | CCAGGTCTTCTCGGACTGATATGGGAATGGGGGCCACTTCAGGAGGGTGGGAAGCTGGTAGGTGGGGGATaGGACATGCCTGATGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: PGLLGLIWEWGPLQEGGKLVGGG*DMPDAR Trigger: CCTGGCATCAGGCATGTCTCATCCCCCACCTACCAG...CTTCCCACCCTCCTGAAGTGGCCCCCATTCCCATATCAGTCCGAGAAGACCTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | GCTCCTAGGCTCCTCCCCGTTTCTCAGCATGCCCACTTCACCTGTGCCCCCGGCAGCCAGTCACTAATGTaGAAGCTGCGTCTTCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: APRLLPVSQHAHFTCAPGSQSLM*KLRLPL Trigger: GAGAGGAAGACGCAGCTTCCACATTAGTGACTGGCT...GCCGGGGGCACAGGTGAAGTGGGCATGCTGAGAAACGGGGAGGAGCCTAGGAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
||
| CDS-3UTR TCA 90 bp | TGGTGGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGGCGTTCCATGCGGATCTTaGAGGTCTGCTGCTGCAACG | + |
|
Preference number: 4 (lower is better) Translates to: WWRKEGCPWGCFRDGEAGVPCGS*RSAAAT Trigger: CGTTGCAGCAGCAGACCTTCAAGATCCGCATGGAAC...GCCTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCCACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | CCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAAGGCCACTGGAGGGAAAGGTGTaGAGGGCTCCGGGACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: PWPSELMITPFPGWRPRPLEGKV*RAPGQQ Trigger: CTGCTGTCCCGGAGCCCTCCACACCTTTCCCTCCAG...TGGCCTTGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CCA 90 bp | GGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGGCAGGCAGGCTCAGGGCTTCCTaGAATTCCCGTGAGCAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: GGRRVVLGDASGMGKQAGRLRAS*NSREQV Trigger: TACTTGCTCACGGGAATTCCAGGAAGCCCTGAGCCT...GCCTGCCTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | GGCCCGTCTGTAAGGCTCCTAGGCTCCTCCCCGTTTCTCAGCATGCCCACTTCATCTTGCCAGCATAGATaGGTTTCTGTCCAGCCACGG | + |
|
Preference number: 4 (lower is better) Translates to: GPSVRLLGSSPFLSMPTSSCQHR*VSVQPR Trigger: CCGTGGCTGGACAGAAACTCATCTATGCTGGCAAGA...TGAAGTGGGCATGCTGAGAAACGGGGAGGAGCCTAGGAGCCTTACAGACGGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
||
| CDS-3UTR CCA 90 bp | CTGGAGGCCAAGGCCAGACTGGGGAGAAGGCCTTTGGCTTCTAACATAGACTTACTGGAGGGAAAGGTGTaGAGGGCTCCGGGACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LEAKARLGRRPLASNIDLLEGKV*RAPGQQ Trigger: CTGCTGTCCCGGAGCCCTCCACACCTTTCCCTCCAG...TAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAGTCTGGCCTTGGCCTCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | CATGGTGGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGCGTAGCCCATGGACATaGTCTCAGTCAGCATCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: HGGGRRVVLGDASGMGKQRSPWT*SQSASS Trigger: AGACGATGCTGACTGAGATCATGTCCATGGGCTACG...CTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCCACCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | AAGATCTGGGCCACTCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCCGCATGTTCTGGAACTaGGGCTGGTCCCGCAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: KIWATPIEDQSLGLQLPLRMFWN*GWSRRN Trigger: GTTCCTGCGGGACCAGCCTCAGTTCCAGAACATGCG...GAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGAGTGGCCCAGATCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | CACTGTCTGCTTTCCTATACAGGGAGCAGCGTATCGCAGAGTGCATGGCCAAGACGCATGTTCTGGAACTaGGGCTGGTCCCGCAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: HCLLSYTGSSVSQSAWPRRMFWN*GWSRRN Trigger: GTTCCTGCGGGACCAGCCTCAGTTCCAGAACATGCG...TCTTGGCCATGCACTCTGCGATACGCTGCTCCCTGTATAGGAAAGCAGACAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
||
| CDS-3UTR TCA 90 bp | CATGGTGGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGAGCGCTGGGTTCTGTTaGATCACTTGCCGCATGTTC | + |
|
Preference number: 4 (lower is better) Translates to: HGGGRRVVLGDASGMGKQSAGFC*ITCRMF Trigger: GAACATGCGGCAAGTGATTCAACAGAACCCAGCGCT...CTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCCACCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | GGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAAGGAGGGTTGGCGCCTGGCTTTCCTaGACAGAACCATGTTCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: GSKLRAPASPHHGGGRRVGAWLS*TEPCSG Trigger: GCCTGAACATGGTTCTGTCCAGGAAAGCCAGGCGCC...AACCCTCCTTCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | CTTGGTCTGCCCTCACTGTCTGCTTTCCTATACAGGGAGCAGCGTATCGCAGAGGGCGCCTGGCTTTCCTaGACAGAACCATGTTCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LGLPSLSAFLYREQRIAEGAWLS*TEPCSG Trigger: GCCTGAACATGGTTCTGTCCAGGAAAGCCAGGCGCC...CTCTGCGATACGCTGCTCCCTGTATAGGAAAGCAGACAGTGAGGGCAGACCAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| CDS-3UTR CCA 90 bp | CTGGAGGCCAAGGCCAGACTGGGGAGAAGGCCTTTGGCTTCTAACATAGACTTAGGGGGTTGTTGTAGCTaGCCCTCAATGCGGCCACAA | + |
|
Preference number: 4 (lower is better) Translates to: LEAKARLGRRPLASNIDLGGCCS*PSMRPQ Trigger: TTGTGGCCGCATTGAGGGCCAGCTACAACAACCCCC...TAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAGTCTGGCCTTGGCCTCCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR TCA 90 bp | ACTCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGGGATGAGACATGCCTaGTGCCAGGACTGGAGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: TPIEDQSLGLQLPLIMVEGMRHA*CQDWRE Trigger: TTCCCTCCAGTCCTGGCATCAGGCATGTCTCATCCC...CTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR GCA 90 bp | TCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGACTTCCTCTCGCCCGCTaGTACCTGAAGAGGGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: SNRGSKLRAPASPHHGGGLPLAR*YLKREQ Trigger: CTGTTCCCTCTTCAGGTAGCAGCGGGCGAGAGGAAG...TCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR GCA 90 bp | AAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAAGGAGGGTTGTCCTTCTCTGGGAAGCCCAGTaGCTTCAGCCTTTCTATAGC | + |
|
Preference number: 4 (lower is better) Translates to: KLRAPASPHHGGGRRVVLLWEAQ*LQPFYS Trigger: GCTATAGAAAGGCTGAAGGCACTGGGCTTCCCAGAG...AAGGACAACCCTCCTTCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CCA 90 bp | CCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAAGGCCAAGGCTCAGGGCTTCCTaGAATTCCCGTGAGCAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: PWPSELMITPFPGWRPRPRLRAS*NSREQV Trigger: TACTTGCTCACGGGAATTCCAGGAAGCCCTGAGCCT...TGGCCTTGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | TCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAGTTCCATGCGGATCTTaGAGGTCTGCTGCTGCAACG | + |
|
Preference number: 4 (lower is better) Translates to: SNRGSKLRAPASPHHGGGVPCGS*RSAAAT Trigger: CGTTGCAGCAGCAGACCTTCAAGATCCGCATGGAAC...TCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | CTGGAGGCCAAGGCCAGACTGGGGAGAAGGCCTTTGGCTTCTAACATAGACTTACGTAGCCCATGGACATaGTCTCAGTCAGCATCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: LEAKARLGRRPLASNIDLRSPWT*SQSASS Trigger: AGACGATGCTGACTGAGATCATGTCCATGGGCTACG...TAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAGTCTGGCCTTGGCCTCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | CATGGTGGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGTCATCATCAAAGTTCTaGCTCAGGAGGAAGTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: HGGGRRVVLGDASGMGKQSSSKF*LRRKLA Trigger: TGCCAACTTCCTCCTGAGTCAGAACTTTGATGATGA...CTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCCACCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CCA 90 bp | AAGATCTGGGCCACTCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCCTGGAGATGTTGTGGTaGTTGACTCCTCTGATGGGC | + |
|
Preference number: 4 (lower is better) Translates to: KIWATPIEDQSLGLQLPLLEMLW*LTPLMG Trigger: GCCCATCAGAGGAGTCAACCACCACAACATCTCCAG...GAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGAGTGGCCCAGATCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | ACTCCAGATGGAAAGATCTGGGCCACTCCAATAGAGGATCAAAGCTTAGGGCTCGGGGGTTGTTGTAGCTaGCCCTCAATGCGGCCACAA | + |
|
Preference number: 4 (lower is better) Translates to: TPDGKIWATPIEDQSLGLGGCCS*PSMRPQ Trigger: TTGTGGCCGCATTGAGGGCCAGCTACAACAACCCCC...GAGCCCTAAGCTTTGATCCTCTATTGGAGTGGCCCAGATCTTTCCATCTGGAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CCA 90 bp | CACTGTCTGCTTTCCTATACAGGGAGCAGCGTATCGCAGAGTGCATGGCCAAGAAGCAGGCAGGAGCGCTaGGTTCTGTTGAATCACTTG | + |
|
Preference number: 4 (lower is better) Translates to: HCLLSYTGSSVSQSAWPRSRQER*VLLNHL Trigger: CAAGTGATTCAACAGAACCCAGCGCTCCTGCCTGCT...TCTTGGCCATGCACTCTGCGATACGCTGCTCCCTGTATAGGAAAGCAGACAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
||
| CDS-3UTR TCA 90 bp | CTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGGGGTCGCCCGCTGCTACCTaGAGAGGGAACAGAGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: LYSRQNLYQRCGSVLGKGSPAAT*RGNRAR Trigger: TCTGGCTCTGTTCCCTCTTCAGGTAGCAGCGGGCGA...CCCCTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | ACTCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGAGCGCTGGGTTCTGTTaGATCACTTGCCGCATGTTC | + |
|
Preference number: 4 (lower is better) Translates to: TPIEDQSLGLQLPLIMVESAGFC*ITCRMF Trigger: GAACATGCGGCAAGTGATTCAACAGAACCCAGCGCT...CTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | GGGTGGCCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCATCATCATCAAAGTTCTaGCTCAGGAGGAAGTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: GWPWPSELMITPFPGWRPSSSKF*LRRKLA Trigger: TGCCAACTTCCTCCTGAGTCAGAACTTTGATGATGA...TGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGGCCACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR GCA 90 bp | GGGTGGCCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAATCTTGAAGGTCTGCTaGTGCAACGTTTTAAGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: GWPWPSELMITPFPGWRPILKVC*CNVLRV Trigger: CACCCTTAAAACGTTGCAGCAGCAGACCTTCAAGAT...TGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGGCCACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR GCA 90 bp | CCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAAGGCCACGGATCTTGAAGGTCTaGTGCTGCAACGTTTTAAGG | + |
|
Preference number: 4 (lower is better) Translates to: PWPSELMITPFPGWRPRPRILKV*CCNVLR Trigger: CCTTAAAACGTTGCAGCAGCAGACCTTCAAGATCCG...TGGCCTTGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | CTGGAGGCCAAGGCCAGACTGGGGAGAAGGCCTTTGGCTTCTAACATAGACTTAAGCCAGTCACTAATGTaGAAGCTGCGTCTTCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LEAKARLGRRPLASNIDLSQSLM*KLRLPL Trigger: GAGAGGAAGACGCAGCTTCCACATTAGTGACTGGCT...TAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAGTCTGGCCTTGGCCTCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | TCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAAGCAGGCAGGAGCGCTaGGTTCTGTTGAATCACTTG | + |
|
Preference number: 4 (lower is better) Translates to: SNRGSKLRAPASPHHGGGSRQER*VLLNHL Trigger: CAAGTGATTCAACAGAACCCAGCGCTCCTGCCTGCT...TCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | ACTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGGGCTGGTAGGTGGGGGATaGGACATGCCTGATGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: TLFTSKPLSEMWFCPGEGLVGGG*DMPDAR Trigger: CCTGGCATCAGGCATGTCTCATCCCCCACCTACCAG...CCCTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | ACTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGGGTCGCCCGCTGCTACCTaGAGAGGGAACAGAGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: TLFTSKPLSEMWFCPGEGSPAAT*RGNRAR Trigger: TCTGGCTCTGTTCCCTCTTCAGGTAGCAGCGGGCGA...CCCTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR GCA 90 bp | CCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAAGGCCAATCTTGAAGGTCTGCTaGTGCAACGTTTTAAGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: PWPSELMITPFPGWRPRPILKVC*CNVLRV Trigger: CACCCTTAAAACGTTGCAGCAGCAGACCTTCAAGAT...TGGCCTTGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | CCTTGGCCTTCAGAACTGATGATAACCCCTTTTCCAGGCTGGAGGCCAAGGCCAGAACAGAGCCAGAAATaGATTCTGGAGATGTTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: PWPSELMITPFPGWRPRPEQSQK*ILEMLW Trigger: CCACAACATCTCCAGAATCCATTTCTGGCTCTGTTC...TGGCCTTGGCCTCCAGCCTGGAAAAGGGGTTATCATCAGTTCTGAAGGCCAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | GGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAAGGAGGGTTGAACAGAGCCAGAAATaGATTCTGGAGATGTTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: GSKLRAPASPHHGGGRRVEQSQK*ILEMLW Trigger: CCACAACATCTCCAGAATCCATTTCTGGCTCTGTTC...AACCCTCCTTCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CCA 90 bp | AACAGCTGGGTGAAATTCAGATTTGCCTTGGTCTGCCCTCACTGTCTGCTTTCCAGGCTCAGGGCTTCCTaGAATTCCCGTGAGCAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: NSWVKFRFALVCPHCLLSRLRAS*NSREQV Trigger: TACTTGCTCACGGGAATTCCAGGAAGCCCTGAGCCT...GGAAAGCAGACAGTGAGGGCAGACCAAGGCAAATCTGAATTTCACCCAGCTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
||
| CDS-3UTR GCA 90 bp | ACTCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGCGGATCTTGAAGGTCTaGTGCTGCAACGTTTTAAGG | + |
|
Preference number: 4 (lower is better) Translates to: TPIEDQSLGLQLPLIMVERILKV*CCNVLR Trigger: CCTTAAAACGTTGCAGCAGCAGACCTTCAAGATCCG...CTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR TCA 90 bp | CTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGGGGTCTTGCCAGCATAGATaGGTTTCTGTCCAGCCACGG | + |
|
Preference number: 4 (lower is better) Translates to: LYSRQNLYQRCGSVLGKGSCQHR*VSVQPR Trigger: CCGTGGCTGGACAGAAACTCATCTATGCTGGCAAGA...CCCCTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR GCA 90 bp | CTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGGGGCTCTGGGAAGCCCAGTaGCTTCAGCCTTTCTATAGC | + |
|
Preference number: 4 (lower is better) Translates to: LYSRQNLYQRCGSVLGKGLWEAQ*LQPFYS Trigger: GCTATAGAAAGGCTGAAGGCACTGGGCTTCCCAGAG...CCCCTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS TCA 90 bp | CAGGACTGGAGGGAAAGGTGTGGAGGGCTCCGGGACAGCAGTGGGTaGGGCCTCTGGGGGTGCCGGGATACCCTGGCCAGCTTTGGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: QDWRERCGGLRDSSG*GLWGCRDTLASFGL Trigger: AAGGCCAAAGCTGGCCAGGGTATCCCGGCACCCCCAGAGGCCTCACCCACTGCTGTCCCGGAGCCCTCCACACCTTTCCCTCCAGTCCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
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| CDS CCA 90 bp | TCCAGGGGGTTCTCCCCTGCTTCTGTGGCCGGCTGCTCAGGCGCCTaGCTTTCCTGGACAGAACCATGTTCAGGCTCAGGGCTTCCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: SRGFSPASVAGCSGA*LSWTEPCSGSGLPG Trigger: TCCAGGAAGCCCTGAGCCTGAACATGGTTCTGTCCAGGAAAGCCAGGCGCCTGAGCAGCCGGCCACAGAAGCAGGGGAGAACCCCCTGGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
||
| CDS CCA 90 bp | AGGGGGTTCTCCCCTGCTGCTTCTGTGGCCGGCTGCTCAGGCGCCTaGCTTTCCTGGACAGAACCATGTTCAGGCTCAGGGCTTCCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: RGFSPAASVAGCSGA*LSWTEPCSGSGLPG Trigger: TCCAGGAAGCCCTGAGCCTGAACATGGTTCTGTCCAGGAAAGCCAGGCGCCTGAGCAGCCGGCCACAGAAGCAGCAGGGGAGAACCCCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000109761.9 ENSMUST00000128035.2 ENSMUST00000144675.8 |
||
| CDS TCA 90 bp | TGGGCTCTTGTCCTCTCTGCTGGTAGGTGGGGGATGAGACATGCCTaGTGCCAGGACTGGAGGGAAAGGTGTGGAGGGCTCCGGGACAGC | + |
|
Preference number: 5 (lower is better) Translates to: WALVLSAGRWGMRHA*CQDWRERCGGLRDS Trigger: GCTGTCCCGGAGCCCTCCACACCTTTCCCTCCAGTCCTGGCATCAGGCATGTCTCATCCCCCACCTACCAGCAGAGAGGACAAGAGCCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
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| CDS-3UTR CAA 90 bp | AGGCCCAGGAACGCCTGGGCTACCACGTGGACCCAAGGAGTGCTCGCTTCCAGGCTGGTGACGGCTAATTaGCTGCAGGAGCTGAGGGTT | + |
|
Preference number: 5 (lower is better) Translates to: RPRNAWATTWTQGVLASRLVTAN*LQELRV Trigger: AACCCTCAGCTCCTGCAGCAAATTAGCCGTCACCAG...CCTGGAAGCGAGCACTCCTTGGGTCCACGTGGTAGCCCAGGCGTTCCTGGGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
||
| CDS TCA 90 bp | GACTCCTCTGATGGGCTCTTGTCCTCTCTGCTGGTAGGTGGGGGATaGGACATGCCTGATGCCAGGACTGGAGGGAAAGGTGTGGAGGGC | + |
|
Preference number: 5 (lower is better) Translates to: DSSDGLLSSLLVGGG*DMPDARTGGKGVEG Trigger: GCCCTCCACACCTTTCCCTCCAGTCCTGGCATCAGGCATGTCTCATCCCCCACCTACCAGCAGAGAGGACAAGAGCCCATCAGAGGAGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
||
| CDS-3UTR CAA 90 bp | GGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGGCAGGCGAGATGTTGTGGTGGTaGACTCCTCTGATGGGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GGRRVVLGDASGMGKQAGEMLWW*TPLMGS Trigger: AGAGCCCATCAGAGGAGTCAACCACCACAACATCTC...GCCTGCCTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CAA 90 bp | GGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGGCAGGCGAGCGCTGGGTTCTGTaGAATCACTTGCCGCATGTT | + |
|
Preference number: 5 (lower is better) Translates to: GGRRVVLGDASGMGKQAGERWVL*NHLPHV Trigger: AACATGCGGCAAGTGATTCAACAGAACCCAGCGCTC...GCCTGCCTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CAA 90 bp | TGGTGGAGGAAGGAGGGTTGTCCTTGGGGATGCTTCAGGGATGGGGAAGCAGGCCTGGTGACGGCTAATTaGCTGCAGGAGCTGAGGGTT | + |
|
Preference number: 5 (lower is better) Translates to: WWRKEGCPWGCFRDGEAGLVTAN*LQELRV Trigger: AACCCTCAGCTCCTGCAGCAAATTAGCCGTCACCAG...GCCTGCTTCCCCATCCCTGAAGCATCCCCAAGGACAACCCTCCTTCCTCCACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS-3UTR CAA 90 bp | CCAGGTCTTCTCGGACTGATATGGGAATGGGGGCCACTTCAGGAGGGTGGGAAGCTGGTGACGGCTAATTaGCTGCAGGAGCTGAGGGTT | + |
|
Preference number: 5 (lower is better) Translates to: PGLLGLIWEWGPLQEGGKLVTAN*LQELRV Trigger: AACCCTCAGCTCCTGCAGCAAATTAGCCGTCACCAG...CTTCCCACCCTCCTGAAGTGGCCCCCATTCCCATATCAGTCCGAGAAGACCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CAA 90 bp | AGAAGGAGCAGCAGTCCTTCTAGGGTTGAGCTGAGGCAGGGGCCCAAGTTTCCATCCTCTGATGGGCTCTaGTCCTCTCTGCTGGTAGGT | + |
|
Preference number: 5 (lower is better) Translates to: RRSSSPSRVELRQGPKFPSSDGL*SSLLVG Trigger: ACCTACCAGCAGAGAGGACAAGAGCCCATCAGAGGA...TGGAAACTTGGGCCCCTGCCTCAGCTCAACCCTAGAAGGACTGCTGCTCCTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| CDS-3UTR CAA 90 bp | AGCATGCCCACTTCACCTGTGCCCCCGGCTAGCTCAGACTCACAAACAGCTGTGGAGATGTTGTGGTGGTaGACTCCTCTGATGGGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: SMPTSPVPPASSDSQTAVEMLWW*TPLMGS Trigger: AGAGCCCATCAGAGGAGTCAACCACCACAACATCTC...CACAGCTGTTTGTGAGTCTGAGCTAGCCGGGGGCACAGGTGAAGTGGGCATGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| CDS-3UTR CAA 90 bp | AAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAAGGAGGGTTGTCCTTTGGCCAGCTTTGGCCTaGGTCACCATGACAACCACA | + |
|
Preference number: 5 (lower is better) Translates to: KLRAPASPHHGGGRRVVLWPALA*VTMTTT Trigger: TGTGGTTGTCATGGTGACCAAGGCCAAAGCTGGCCA...AAGGACAACCCTCCTTCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CAA 90 bp | TCTTCTCGGACTGATATGGGAATGGGGGCCACTTCAGGAGGGTGGGAAGCTGGGTGGATTCTGGAGATGTaGTGGTGGTTGACTCCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: SSRTDMGMGATSGGWEAGWILEM*WWLTPL Trigger: CAGAGGAGTCAACCACCACAACATCTCCAGAATCCA...CCCAGCTTCCCACCCTCCTGAAGTGGCCCCCATTCCCATATCAGTCCGAGAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS GCA 90 bp | CAGAGCCAGTCACTAATGTGGAAGCTGCGTCTTCCTCTCGCCCGCTaGTACCTGAAGAGGGAACAGAGCCAGAAATGGATTCTGGAGATG | + |
|
Preference number: 5 (lower is better) Translates to: QSQSLMWKLRLPLAR*YLKREQSQKWILEM Trigger: CATCTCCAGAATCCATTTCTGGCTCTGTTCCCTCTTCAGGTAGCAGCGGGCGAGAGGAAGACGCAGCTTCCACATTAGTGACTGGCTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
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| CDS CCA 90 bp | TATAGCCTCCTTCTCCTGCGGTGTCACCTGGATATAGTTCATCTGTaGGGCCTCCTCACCTATGGCACCAACCTCCCCCTCTACATCAGA | + |
|
Preference number: 5 (lower is better) Translates to: YSLLLLRCHLDIVHL*GLLTYGTNLPLYIR Trigger: TCTGATGTAGAGGGGGAGGTTGGTGCCATAGGTGAGGAGGCCCCACAGATGAACTATATCCAGGTGACACCGCAGGAGAAGGAGGCTATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000144675.8 |
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| CDS-3UTR CAA 90 bp | ACTCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGGTTCCATGCGGATCTaGAAGGTCTGCTGCTGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: TPIEDQSLGLQLPLIMVEGSMRI*KVCCCN Trigger: GTTGCAGCAGCAGACCTTCAAGATCCGCATGGAACC...CTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CAA 90 bp | ACTCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGTGGATTCTGGAGATGTaGTGGTGGTTGACTCCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: TPIEDQSLGLQLPLIMVEWILEM*WWLTPL Trigger: CAGAGGAGTCAACCACCACAACATCTCCAGAATCCA...CTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CAA 90 bp | CTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGGGGGGTTCCATGCGGATCTaGAAGGTCTGCTGCTGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: LYSRQNLYQRCGSVLGKGGSMRI*KVCCCN Trigger: GTTGCAGCAGCAGACCTTCAAGATCCGCATGGAACC...CCCCTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAG 50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CAA 90 bp | TCCAATAGAGGATCAAAGCTTAGGGCTCCAGCTTCCCCTCATCATGGTGGAGGAGTTCTGTTGAATCACTaGCCGCATGTTCTGGAACTG | + |
|
Preference number: 5 (lower is better) Translates to: SNRGSKLRAPASPHHGGGVLLNH*PHVLEL Trigger: CAGTTCCAGAACATGCGGCAAGTGATTCAACAGAAC...TCCTCCACCATGATGAGGGGAAGCTGGAGCCCTAAGCTTTGATCCTCTATTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CAA 90 bp | ACTGTCTGCTTTCCTATACAGGGAGCAGCGTATCGCAGAGTGCATGGCCAAGATGTTCTGTTGAATCACTaGCCGCATGTTCTGGAACTG | + |
|
Preference number: 5 (lower is better) Translates to: TVCFPIQGAAYRRVHGQDVLLNH*PHVLEL Trigger: CAGTTCCAGAACATGCGGCAAGTGATTCAACAGAAC...ATCTTGGCCATGCACTCTGCGATACGCTGCTCCCTGTATAGGAAAGCAGACAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| CDS-3UTR CAA 90 bp | GTGAAATTCAGATTTGCCTTGGTCTGCCCTCACTGTCTGCTTTCCTATACAGGGGAGCGCTGGGTTCTGTaGAATCACTTGCCGCATGTT | + |
|
Preference number: 5 (lower is better) Translates to: VKFRFALVCPHCLLSYTGERWVL*NHLPHV Trigger: AACATGCGGCAAGTGATTCAACAGAACCCAGCGCTC...CCCTGTATAGGAAAGCAGACAGTGAGGGCAGACCAAGGCAAATCTGAATTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144675.8 |
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| CDS-3UTR CAA 90 bp | GCCAGACTGGGGAGAAGGCCTTTGGCTTCTAACATAGACTTACTCCAGATGGAAGTTCTGTTGAATCACTaGCCGCATGTTCTGGAACTG | + |
|
Preference number: 5 (lower is better) Translates to: ARLGRRPLASNIDLLQMEVLLNH*PHVLEL Trigger: CAGTTCCAGAACATGCGGCAAGTGATTCAACAGAAC...TTCCATCTGGAGTAAGTCTATGTTAGAAGCCAAAGGCCTTCTCCCCAGTCTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CAA 90 bp | ACTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGGGGAGCGCTGGGTTCTGTaGAATCACTTGCCGCATGTT | + |
|
Preference number: 5 (lower is better) Translates to: TLFTSKPLSEMWFCPGEGERWVL*NHLPHV Trigger: AACATGCGGCAAGTGATTCAACAGAACCCAGCGCTC...CCCTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS-3UTR CAA 90 bp | AAACTTTATTCACGTCAAAACCTTTATCAGAGATGTGGTTCTGTCCTGGGGAAGTGGCCAGCTTTGGCCTaGGTCACCATGACAACCACA | + |
|
Preference number: 5 (lower is better) Translates to: KLYSRQNLYQRCGSVLGKWPALA*VTMTTT Trigger: TGTGGTTGTCATGGTGACCAAGGCCAAAGCTGGCCA...CTTCCCCAGGACAGAACCACATCTCTGATAAAGGTTTTGACGTGAATAAAGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
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| CDS GCA 72 bp | AGGCTGGTCCCGCAGGAACTCCAGGGGGTTCTCCCCTaGTTCTGTGGCCGGCTGCTCAGGCGCCTGGCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: RLVPQELQGVLP*FCGRLLRRLAF Trigger: GAAAGCCAGGCGCCTGAGCAGCCGGCCACAGAAGCAGGGGAGAACCCCCTGGAGTTCCTGCGGGACCAGCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
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| CDS GCA 72 bp | CTGGTCCCGCAGGAACTCCAGGGGGTTCTCCCCTGCTaGTTCTGTGGCCGGCTGCTCAGGCGCCTGGCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: LVPQELQGVLPC*FCGRLLRRLAF Trigger: GAAAGCCAGGCGCCTGAGCAGCCGGCCACAGAAGCAGCAGGGGAGAACCCCCTGGAGTTCCTGCGGGACCAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000109761.9 ENSMUST00000128035.2 ENSMUST00000144675.8 |
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| CDS GCA 72 bp | CACAGCTCGGTGGGGGTTGTTGTAGCTGGCCCTCAATaGGGCCACAACCCGCTCCCGCTCGTAGCCCATGGA | + |
|
Preference number: 6 (lower is better) Translates to: HSSVGVVVAGPQ*GHNPLPLVAHG Trigger: TCCATGGGCTACGAGCGGGAGCGGGTTGTGGCCGCATTGAGGGCCAGCTACAACAACCCCCACCGAGCTGTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
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| CDS GCA 72 bp | TCCAGGGGGTTCTCCCCTGCTGCTTCTGTGGCCGGCTaGTCAGGCGCCTGGCTTTCCTGGACAGAACCATGT | + |
|
Preference number: 6 (lower is better) Translates to: SRGFSPAASVAG*SGAWLSWTEPC Trigger: ACATGGTTCTGTCCAGGAAAGCCAGGCGCCTGAGCAGCCGGCCACAGAAGCAGCAGGGGAGAACCCCCTGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000109761.9 ENSMUST00000128035.2 ENSMUST00000144675.8 |
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| CDS CCA 72 bp | GCAGTGGGTGAGGCCTCTGGGGGTGCCGGGATACCCTaGCCAGCTTTGGCCTTGGTCACCATGACAACCACA | + |
|
Preference number: 6 (lower is better) Translates to: AVGEASGGAGIP*PALALVTMTTT Trigger: TGTGGTTGTCATGGTGACCAAGGCCAAAGCTGGCCAGGGTATCCCGGCACCCCCAGAGGCCTCACCCACTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
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| CDS CCA 72 bp | GCAAGTACTCCACAGCTCGGTGGGGGTTGTTGTAGCTaGCCCTCAATGCGGCCACAACCCGCTCCCGCTCGT | + |
|
Preference number: 6 (lower is better) Translates to: ASTPQLGGGCCS*PSMRPQPAPAR Trigger: ACGAGCGGGAGCGGGTTGTGGCCGCATTGAGGGCCAGCTACAACAACCCCCACCGAGCTGTGGAGTACTTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
||
| CDS GCA 72 bp | AACTCCAGGGGGTTCTCCCCTGCTTCTGTGGCCGGCTaGTCAGGCGCCTGGCTTTCCTGGACAGAACCATGT | + |
|
Preference number: 6 (lower is better) Translates to: NSRGFSPASVAG*SGAWLSWTEPC Trigger: ACATGGTTCTGTCCAGGAAAGCCAGGCGCCTGAGCAGCCGGCCACAGAAGCAGGGGAGAACCCCCTGGAGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003911.13 |
||
| CDS TCA 72 bp | GATGGGCTCTTGTCCTCTCTGCTGGTAGGTGGGGGATaGGACATGCCTGATGCCAGGACTGGAGGGAAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: DGLLSSLLVGGG*DMPDARTGGKG Trigger: ACCTTTCCCTCCAGTCCTGGCATCAGGCATGTCTCATCCCCCACCTACCAGCAGAGAGGACAAGAGCCCATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
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| CDS CCA 72 bp | TTCACACGCGAAGTAGGCCTGGATCACCAGGCTCTCTaGGAAGCCCAGTGCCTTCAGCCTTTCTATAGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: FTREVGLDHQAL*EAQCLQPFYSL Trigger: GAGGCTATAGAAAGGCTGAAGGCACTGGGCTTCCCAGAGAGCCTGGTGATCCAGGCCTACTTCGCGTGTGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 |
||
| CDS TCA 72 bp | TGTGGAAGCTGCGTCTTCCTCTCGCCCGCTGCTACCTaGAGAGGGAACAGAGCCAGAAATGGATTCTGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: CGSCVFLSPAAT*RGNRARNGFWR Trigger: TCTCCAGAATCCATTTCTGGCTCTGTTCCCTCTTCAGGTAGCAGCGGGCGAGAGGAAGACGCAGCTTCCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
||
| CDS TCA 72 bp | AACCATGTTCAGGCTCAGGGCTTCCTGGAATTCCCGTaGGCAAGTACTCCACAGCTCGGTGGGGGTTGTTGT | + |
|
Preference number: 6 (lower is better) Translates to: NHVQAQGFLEFP*ASTPQLGGGCC Trigger: ACAACAACCCCCACCGAGCTGTGGAGTACTTGCTCACGGGAATTCCAGGAAGCCCTGAGCCTGAACATGGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 ENSMUST00000144675.8 |
||
| CDS CCA 72 bp | TTCCTGGACAGAACCATGTTCAGGCTCAGGGCTTCCTaGAATTCCCGTGAGCAAGTACTCCACAGCTCGGTG | + |
|
Preference number: 6 (lower is better) Translates to: FLDRTMFRLRAS*NSREQVLHSSV Trigger: CACCGAGCTGTGGAGTACTTGCTCACGGGAATTCCAGGAAGCCCTGAGCCTGAACATGGTTCTGTCCAGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 ENSMUST00000144675.8 |
||
| CDS CAA 72 bp | CAGAGCCAGAAATGGATTCTGGAGATGTTGTGGTGGTaGACTCCTCTGATGGGCTCTTGTCCTCTCTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: QSQKWILEMLWW*TPLMGSCPLCW Trigger: CCAGCAGAGAGGACAAGAGCCCATCAGAGGAGTCAACCACCACAACATCTCCAGAATCCATTTCTGGCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
||
| CDS CAA 90 bp | TGCTACCTGAAGAGGGAACAGAGCCAGAAATGGATTCTGGAGATGTaGTGGTGGTTGACTCCTCTGATGGGCTCTTGTCCTCTCTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: CYLKREQSQKWILEM*WWLTPLMGSCPLCW Trigger: CCAGCAGAGAGGACAAGAGCCCATCAGAGGAGTCAACCACCACAACATCTCCAGAATCCATTTCTGGCTCTGTTCCCTCTTCAGGTAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
||
| CDS CCA 72 bp | GAACAGAGCCAGAAATGGATTCTGGAGATGTTGTGGTaGTTGACTCCTCTGATGGGCTCTTGTCCTCTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: EQSQKWILEMLW*LTPLMGSCPLC Trigger: GCAGAGAGGACAAGAGCCCATCAGAGGAGTCAACCACCACAACATCTCCAGAATCCATTTCTGGCTCTGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
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| CDS CCA 72 bp | AGGGAACAGAGCCAGAAATGGATTCTGGAGATGTTGTaGTGGTTGACTCCTCTGATGGGCTCTTGTCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: REQSQKWILEML*WLTPLMGSCPL Trigger: GAGAGGACAAGAGCCCATCAGAGGAGTCAACCACCACAACATCTCCAGAATCCATTTCTGGCTCTGTTCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
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| CDS TCA 72 bp | TGGGAACATCGTCACTCAAGATCTTGCCAGCATAGATaGGTTTCTGTCCAGCCACGGGGAAAGCATCTCTAC | + |
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Preference number: 6 (lower is better) Translates to: WEHRHSRSCQHR*VSVQPRGKHLY Trigger: GTAGAGATGCTTTCCCCGTGGCTGGACAGAAACTCATCTATGCTGGCAAGATCTTGAGTGACGATGTTCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003911.13 ENSMUST00000109761.9 ENSMUST00000128035.2 |
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