Pregenerated sensors for RAD21L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074704Ensembl transcript IDs: ENSMUST00000096439.4, ENSMUST00000180195.8
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGTGCAAGGTCCAGAACCATGAGAGTGTCCATAAAGGAAGCAAGCTaGCTATGCATAGCCTTGCTGCTTATCTCCTTGACTGGATCTACC | + |
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Preference number: 5 (lower is better) Translates to: GARSRTMRVSIKEAS*LCIALLLISLTGST Trigger: GGTAGATCCAGTCAAGGAGATAAGCAGCAAGGCTATGCATAGGCAGCTTGCTTCCTTTATGGACACTCTCATGGTTCTGGACCTTGCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 90 bp | AAGCTACCCACAGATTCATCAGTCACATCCTTCCAATCTTGGGGTTaGTCTAACTCACTGTGGGAATTTGGCTCTCCCATCACTGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: KLPTDSSVTSFQSWG*SNSLWEFGSPITEG Trigger: ACCCTCAGTGATGGGAGAGCCAAATTCCCACAGTGAGTTAGATCAACCCCAAGATTGGAAGGATGTGACTGATGAATCTGTGGGTAGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 90 bp | CCAAGAATATCCTGCTCAGAGTTAACATTCATGTTGACGTTCTCCTaGAAGCTACCCACAGATTCATCAGTCACATCCTTCCAATCTTGG | + |
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Preference number: 5 (lower is better) Translates to: PRISCSELTFMLTFS*KLPTDSSVTSFQSW Trigger: CCAAGATTGGAAGGATGTGACTGATGAATCTGTGGGTAGCTTTCAGGAGAACGTCAACATGAATGTTAACTCTGAGCAGGATATTCTTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 90 bp | CACTGGAGTTCATTAATATGTTGTCATCAAAGAAGCTATGTCTTCTaGGGATTTCAGGTTCATCCCCAAAGCTCCCAGCTTGGAAAAGTA | + |
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Preference number: 5 (lower is better) Translates to: HWSSLICCHQRSYVF*GFQVHPQSSQLGKV Trigger: TACTTTTCCAAGCTGGGAGCTTTGGGGATGAACCTGAAATCCTCAGAAGACATAGCTTCTTTGATGACAACATATTAATGAACTCCAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 90 bp | TGTTATTTCATTTATTTCTTCATCTTCAGGTATACATTGGTCATCTaGATTACCTGGTTCTACCATTATACTACTGGGAAGCTCAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: CYFIYFFIFRYTLVI*ITWFYHYTTGKLRR Trigger: CCTCCTGAGCTTCCCAGTAGTATAATGGTAGAACCAGGTAATTCAGATGACCAATGTATACCTGAAGATGAAGAAATAAATGAAATAACA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180195.8 |
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| CDS CCA 72 bp | CTTCTCCCAGTGAGCTGCAAGCCATATCTTGGCCAATaGCCCCCGTTTACTCATAAGCACATGAGTGTAGAA | + |
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Preference number: 6 (lower is better) Translates to: LLPVSCKPYLGQ*PPFTHKHMSVE Trigger: TTCTACACTCATGTGCTTATGAGTAAACGGGGGCCATTGGCCAAGATATGGCTTGCAGCTCACTGGGAGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS CAA 90 bp | ACCATGAGAGTGTCCATAAAGGAAGCAAGCTGCCTATGCATAGCCTaGCTGCTTATCTCCTTGACTGGATCTACCAGCAATCTCCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: TMRVSIKEASCLCIA*LLISLTGSTSNLLF Trigger: AAAGAGGAGATTGCTGGTAGATCCAGTCAAGGAGATAAGCAGCAAGGCTATGCATAGGCAGCTTGCTTCCTTTATGGACACTCTCATGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS GCA 72 bp | ACCATGAGAGTGTCCATAAAGGAAGCAAGCTGCCTATaGATAGCCTTGCTGCTTATCTCCTTGACTGGATCT | + |
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Preference number: 6 (lower is better) Translates to: TMRVSIKEASCL*IALLLISLTGS Trigger: AGATCCAGTCAAGGAGATAAGCAGCAAGGCTATGCATAGGCAGCTTGCTTCCTTTATGGACACTCTCATGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS GCA 72 bp | TCCAGAACCATGAGAGTGTCCATAAAGGAAGCAAGCTaGCTATGCATAGCCTTGCTGCTTATCTCCTTGACT | + |
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Preference number: 6 (lower is better) Translates to: SRTMRVSIKEAS*LCIALLLISLT Trigger: AGTCAAGGAGATAAGCAGCAAGGCTATGCATAGGCAGCTTGCTTCCTTTATGGACACTCTCATGGTTCTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS CCA 72 bp | CTGCCTATGCATAGCCTTGCTGCTTATCTCCTTGACTaGATCTACCAGCAATCTCCTCTTTTTCCTTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LPMHSLAAYLLD*IYQQSPLFPSP Trigger: AGGAGAAGGAAAAAGAGGAGATTGCTGGTAGATCCAGTCAAGGAGATAAGCAGCAAGGCTATGCATAGGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS CCA 72 bp | CTGCCTGATGACTCCAATTCAGCTGGACAATTTTCTTaGGCCAAGGACCCATTCATTGAAGACAATCCCTCA | + |
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Preference number: 6 (lower is better) Translates to: LPDDSNSAGQFS*AKDPFIEDNPS Trigger: TGAGGGATTGTCTTCAATGAATGGGTCCTTGGCCCAAGAAAATTGTCCAGCTGAATTGGAGTCATCAGGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 72 bp | ACAGATTCATCAGTCACATCCTTCCAATCTTGGGGTTaGTCTAACTCACTGTGGGAATTTGGCTCTCCCATC | + |
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Preference number: 6 (lower is better) Translates to: TDSSVTSFQSWG*SNSLWEFGSPI Trigger: GATGGGAGAGCCAAATTCCCACAGTGAGTTAGATCAACCCCAAGATTGGAAGGATGTGACTGATGAATCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 72 bp | AGCTGGACAATTTTCTTGGGCCAAGGACCCATTCATTaGAGACAATCCCTCAACAGCTGGAGAAATCATTCC | + |
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Preference number: 6 (lower is better) Translates to: SWTIFLGQGPIH*RQSLNSWRNHS Trigger: GGAATGATTTCTCCAGCTGTTGAGGGATTGTCTTCAATGAATGGGTCCTTGGCCCAAGAAAATTGTCCAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 72 bp | TTTCAATTCGTCATTAATCAAATCCTGGGTAGCAGTTaGCAGAAGCATATCCACTCCTCCCCGCTTCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: FQFVINQILGSS*QKHIHSSPLLP Trigger: TGGAAGAAGCGGGGAGGAGTGGATATGCTTCTGTCAACTGCTACCCAGGATTTGATTAATGACGAATTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS GCA 72 bp | CTTATAGAACATTGGTCCCACTGTAGCTATAATATCTaGATAGGGAACACTCTGGCTCAGCTCAATAGCACG | + |
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Preference number: 6 (lower is better) Translates to: LIEHWSHCSYNI*IGNTLAQLNST Trigger: CGTGCTATTGAGCTGAGCCAGAGTGTTCCCTATGCAGATATTATAGCTACAGTGGGACCAATGTTCTATAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS CCA 72 bp | GGTCATCTGAATTACCTGGTTCTACCATTATACTACTaGGAAGCTCAGGAGGCAGAGACACTTCTTTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: GHLNYLVLPLYY*EAQEAETLLCS Trigger: TGAACAAAGAAGTGTCTCTGCCTCCTGAGCTTCCCAGTAGTATAATGGTAGAACCAGGTAATTCAGATGACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180195.8 |
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| CDS CAA 72 bp | TCTCCTGCAGCTCCTTCATCTCCAAATCCATCTCCATaGTCAAAGAACAAAGATTTTTCCTCAGCGAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: SPAAPSSPNPSP*SKNKDFSSAKL Trigger: AAGCTTCGCTGAGGAAAAATCTTTGTTCTTTGACAATGGAGATGGATTTGGAGATGAAGGAGCTGCAGGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS CAA 90 bp | ACTCCAATTCAGCTGGACAATTTTCTTGGGCCAAGGACCCATTCATaGAAGACAATCCCTCAACAGCTGGAGAAATCATTCCAAGAATAT | + |
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Preference number: 6 (lower is better) Translates to: TPIQLDNFLGPRTHS*KTIPQQLEKSFQEY Trigger: ATATTCTTGGAATGATTTCTCCAGCTGTTGAGGGATTGTCTTCAATGAATGGGTCCTTGGCCCAAGAAAATTGTCCAGCTGAATTGGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS CAA 72 bp | ATATTCTTCTCTAAGTGTGATTTCCTCTGGTCTACTTaGGTTCTGAGCAAGGGGCTCCGAAATATCAATCTC | + |
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Preference number: 6 (lower is better) Translates to: IFFSKCDFLWST*VLSKGLRNINL Trigger: GAGATTGATATTTCGGAGCCCCTTGCTCAGAACCAAAGTAGACCAGAGGAAATCACACTTAGAGAAGAATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 72 bp | TCTCTAAGTGTGATTTCCTCTGGTCTACTTTGGTTCTaGGCAAGGGGCTCCGAAATATCAATCTCATTTATA | + |
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Preference number: 6 (lower is better) Translates to: SLSVISSGLLWF*ARGSEISISFI Trigger: TATAAATGAGATTGATATTTCGGAGCCCCTTGCTCAGAACCAAAGTAGACCAGAGGAAATCACACTTAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS CCA 72 bp | GTAAACAACATTTTCAATTCGTCATTAATCAAATCCTaGGTAGCAGTTGACAGAAGCATATCCACTCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: VNNIFNSSLIKS*VAVDRSISTPP Trigger: GGGAGGAGTGGATATGCTTCTGTCAACTGCTACCCAGGATTTGATTAATGACGAATTGAAAATGTTGTTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 72 bp | ATTTATTTCTTCATCTTCAGGTATACATTGGTCATCTaGATTACCCATTATACTACTGGGAAGCTCAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: IYFFIFRYTLVI*ITHYTTGKLRR Trigger: CCTCCTGAGCTTCCCAGTAGTATAATGGGTAATTCAGATGACCAATGTATACCTGAAGATGAAGAAATAAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096439.4 |
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| CDS GCA 72 bp | ATCTTTGATTCCATTTTTCTGCCTCAGTATTTTGTTTaGTGCCTGATGACTCCAATTCAGCTGGACAATTTT | + |
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Preference number: 6 (lower is better) Translates to: IFDSIFLPQYFV*CLMTPIQLDNF Trigger: AAAATTGTCCAGCTGAATTGGAGTCATCAGGCAGCAAACAAAATACTGAGGCAGAAAAATGGAATCAAAGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS CAA 90 bp | ATCATTGCTATATTCTTCTCTAAGTGTGATTTCCTCTGGTCTACTTaGGTTCTGAGCAAGGGGCTCCGAAATATCAATCTCATTTATATT | + |
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Preference number: 6 (lower is better) Translates to: IIAIFFSKCDFLWST*VLSKGLRNINLIYI Trigger: AATATAAATGAGATTGATATTTCGGAGCCCCTTGCTCAGAACCAAAGTAGACCAGAGGAAATCACACTTAGAGAAGAATATAGCAATGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096439.4 ENSMUST00000180195.8 |
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| CDS TCA 72 bp | ATTTATTTCTTCATCTTCAGGTATACATTGGTCATCTaGATTACCTGGTTCTACCATTATACTACTGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: IYFFIFRYTLVI*ITWFYHYTTGK Trigger: CTTCCCAGTAGTATAATGGTAGAACCAGGTAATTCAGATGACCAATGTATACCTGAAGATGAAGAAATAAAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180195.8 |
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