Pregenerated sensors for RAD21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022314Ensembl transcript IDs: ENSMUST00000022927.11, ENSMUST00000226529.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTACTACAGTaGTTAACCAGACCGTTGGTTTCACTGATGGGAAGACATTTTTCT | + |
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Preference number: 1 (lower is better) Translates to: IKKTSTMLHTLSLLQ*LTRPLVSLMGRHFS Trigger: AGAAAAATGTCTTCCCATCAGTGAAACCAACGGTCTGGTTAACCACTGTAGTAGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR TCA 90 bp | AATCTTTTATTGCTCAGAAACTCACCTTCTCGAAGAGGTATATTCTaGCTACCCTACACTAATACTGCAGCCAACCAACTATCTGCACCT | + |
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Preference number: 1 (lower is better) Translates to: NLLLLRNSPSRRGIF*LPYTNTAANQLSAP Trigger: AGGTGCAGATAGTTGGTTGGCTGCAGTATTAGTGTAGGGTAGTCAGAATATACCTCTTCGAGAAGGTGAGTTTCTGAGCAATAAAAGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR CCA 90 bp | CCGAAGAAGATCAGTCAGCACAACCTCACAAATTCTTGCTCAGTGTaGATTTACTTTAAACATGATCAAGAAGACAAGCACGATGCTTCA | + |
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Preference number: 1 (lower is better) Translates to: PKKISQHNLTNSCSV*IYFKHDQEDKHDAS Trigger: TGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAAAGTAAATCCACACTGAGCAAGAATTTGTGAGGTTGTGCTGACTGATCTTCTTCGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR-3UTR GCA 90 bp | CAGGGGAATGTCTGCTTCCATGATCTCATTATTCAAGCAAACATCCAAACACCTCGTTCTGAGCTGCGGTaGATAGCATCAGAGGTCCTA | + |
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Preference number: 2 (lower is better) Translates to: QGNVCFHDLIIQANIQTPRSELR*IASEVL Trigger: TAGGACCTCTGATGCTATGCACCGCAGCTCAGAACG...AGGTGTTTGGATGTTTGCTTGAATAATGAGATCATGGAAGCAGACATTCCCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR CAA 90 bp | ACGATGCTTCACACACTATCCCTACTACAGTGGTTAACCAGACCGTaGGTTTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: TMLHTLSLLQWLTRP*VSLMGRHFSLPVKG Trigger: TCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAAACCAACGGTCTGGTTAACCACTGTAGTAGGGATAGTGTGTGAAGCATCGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR-3UTR CCA 90 bp | GCTGCCTTTCAACAAGCTGTCAGACAATGGTCAGTAGTGTTCGTGGAACTACTGCTGTTAAAAGTCTTCTaGGTTCTTGGGCTACTGTTT | + |
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Preference number: 2 (lower is better) Translates to: AAFQQAVRQWSVVFVELLLLKVF*VLGLLF Trigger: AAACAGTAGCCCAAGAACCCAGAAGACTTTTAACAG...CAGTAGTTCCACGAACACTACTGACCATTGTCTGACAGCTTGTTGAAAGGCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR-3UTR GCA 90 bp | AAGATCAGTCAGCACAACCTCACAAATTCTTGCTCAGTGTGGATTTACTTTAAACTCCATATTCTTACATaGACCAATATTGCACACATC | + |
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Preference number: 2 (lower is better) Translates to: KISQHNLTNSCSVWIYFKLHILT*TNIAHI Trigger: GATGTGTGCAATATTGGTGCATGTAAGAATATGGAG...TTTAAAGTAAATCCACACTGAGCAAGAATTTGTGAGGTTGTGCTGACTGATCTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR TCA 72 bp | TCTGCCCTTCAGCAGGCAGGGGAATGTCTGCTTCCATaGTCTCATTATTCAAGCAAACATCCAAACACCTCT | + |
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Preference number: 3 (lower is better) Translates to: SALQQAGECLLP*SHYSSKHPNTS Trigger: AGAGGTGTTTGGATGTTTGCTTGAATAATGAGATCATGGAAGCAGACATTCCCCTGCCTGCTGAAGGGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR CCA 72 bp | ACAAGCACGATGCTTCACACACTATCCCTACTACAGTaGTTAACCAGACCGTTGGTTTCACTGATGGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: TSTMLHTLSLLQ*LTRPLVSLMGR Trigger: TCTTCCCATCAGTGAAACCAACGGTCTGGTTAACCACTGTAGTAGGGATAGTGTGTGAAGCATCGTGCTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR-3UTR CAA 90 bp | TTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTACTACAGTGGTTAACCAGACCGTaGGTTTCACTGATGGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: LNMIKKTSTMLHTLSLLQWLTRP*VSLMGR Trigger: TCTTCCCATCAGTGAAACCAACGGTCTGGTTAACCA...CTGTAGTAGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR TCA 72 bp | TTGCTCAGAAACTCACCTTCTCGAAGAGGTATATTCTaGCTACCCTACACTAATACTGCAGCCAACCAACTA | + |
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Preference number: 3 (lower is better) Translates to: LLRNSPSRRGIF*LPYTNTAANQL Trigger: TAGTTGGTTGGCTGCAGTATTAGTGTAGGGTAGTCAGAATATACCTCTTCGAGAAGGTGAGTTTCTGAGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR GCA 72 bp | ACTCTGCTTAGATTTAGAATTACCTTAAGACAGTGCTaGCTTTCAACAAGCTGTCAGACAATGGTCAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: TLLRFRITLRQC*LSTSCQTMVSS Trigger: ACTACTGACCATTGTCTGACAGCTTGTTGAAAGGCAGCACTGTCTTAAGGTAATTCTAAATCTAAGCAGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR CCA 72 bp | ATCAGTCAGCACAACCTCACAAATTCTTGCTCAGTGTaGATTTACTTTAAACATGATCAAGAAGACAAGCAC | + |
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Preference number: 3 (lower is better) Translates to: ISQHNLTNSCSV*IYFKHDQEDKH Trigger: GTGCTTGTCTTCTTGATCATGTTTAAAGTAAATCCACACTGAGCAAGAATTTGTGAGGTTGTGCTGACTGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | GTTTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGACTCAAACCACAGTCGATGACATCTCGCTaGGGCTGTGGCTGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: VSLMGRHFSLPVKGLKPQSMTSR*GCGCCC Trigger: GCAGCAGCAGCCACAGCCGCAGCGAGATGTCATCGA...CTGTGGTTTGAGTCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | GCTGCCTTTCAACAAGCTGTCAGACAATGGTCAGTAGTGTTCGTGGAACTACTGCCGTGGTCCAGGGGTTaGAATGATGTCACTGTACGG | + |
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Preference number: 4 (lower is better) Translates to: AAFQQAVRQWSVVFVELLPWSRG*NDVTVR Trigger: CCGTACAGTGACATCATTGCAACCCCTGGACCACGG...CAGTAGTTCCACGAACACTACTGACCATTGTCTGACAGCTTGTTGAAAGGCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CCA 90 bp | GCTGCCTTTCAACAAGCTGTCAGACAATGGTCAGTAGTGTTCGTGGAACTACTGGTCCTGGAGGCGGCTTaGCTCTTCTATAATGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: AAFQQAVRQWSVVFVELLVLEAA*LFYNGL Trigger: GAGCCCATTATAGAAGAGCCAAGCCGCCTCCAGGAC...CAGTAGTTCCACGAACACTACTGACCATTGTCTGACAGCTTGTTGAAAGGCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | TTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGACTCAAACCACAGTTAGGTTGCTGGTGCTCTaGTCTGGCTCGAGGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: FTDGKTFFSSCQGTQTTVRLLVL*SGSRRR Trigger: CCTTCTCCTCGAGCCAGAGCAGAGCACCAGCAACCT...AACTGTGGTTTGAGTCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | TTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTACTACAGTGGCAACATGACCCCTaGCTCAGACAAGGCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: LNMIKKTSTMLHTLSLLQWQHDP*LRQGRG Trigger: CCCCCTGCCTTGTCTGAGGCAGGGGTCATGTTGCCA...CTGTAGTAGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | CAGGGGAATGTCTGCTTCCATGATCTCATTATTCAAGCAAACATCCAAACACCTTGCTGCTGTGGCTGCTaGTCCTCTCTGGGAACCTCT | + |
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Preference number: 4 (lower is better) Translates to: QGNVCFHDLIIQANIQTPCCCGC*SSLGTS Trigger: AGAGGTTCCCAGAGAGGAGCAGCAGCCACAGCAGCA...AGGTGTTTGGATGTTTGCTTGAATAATGAGATCATGGAAGCAGACATTCCCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | ATTTACTTTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTTGCTGCTGCTGTGGCTaGTGCTCCTCTCTGGGAACC | + |
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Preference number: 4 (lower is better) Translates to: IYFKHDQEDKHDASHTIPCCCCG*CSSLGT Trigger: GGTTCCCAGAGAGGAGCAGCAGCCACAGCAGCAGCA...AGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAAAGTAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CCA 90 bp | GTTTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGACTCAAACCACAGCTATGGTTGTTCTGCTaGCCTCCATCACTGAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: VSLMGRHFSLPVKGLKPQLWLFC*PPSLSP Trigger: AGGACTCAGTGATGGAGGCCAGCAGAACAACCATAG...CTGTGGTTTGAGTCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR TCA 90 bp | TTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTACTACAGGTCCAGGGGTTGCAATaGTGTCACTGTACGGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: LNMIKKTSTMLHTLSLLQVQGLQ*CHCTAL Trigger: AAGAGCCGTACAGTGACATCATTGCAACCCCTGGAC...CTGTAGTAGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | GTTTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGACTCAAACCACAGCTTCTATGGTTGTTCTaGTGGCCTCCATCACTGAGT | + |
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Preference number: 4 (lower is better) Translates to: VSLMGRHFSLPVKGLKPQLLWLF*WPPSLS Trigger: ACTCAGTGATGGAGGCCAGCAGAACAACCATAGAAG...CTGTGGTTTGAGTCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CCA 90 bp | TTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTACTACAGCATAAGCTTCTTGGTTaGCGGAGCCAGGTCCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: LNMIKKTSTMLHTLSLLQHKLLG*RSQVQS Trigger: ACTCTGGACCTGGCTCCGCCAACCAAGAAGCTTATG...CTGTAGTAGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CCA 90 bp | CAGTGTGGATTTACTTTAAACATGATCAAGAAGACAAGCACGATGCTTCACACAGGGGTGGTGGGGGCATaGCTGATTCTTCTATGGTTG | + |
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Preference number: 4 (lower is better) Translates to: QCGFTLNMIKKTSTMLHTGVVGA*LILLWL Trigger: CAACCATAGAAGAATCAGCCATGCCCCCACCACCCC...TGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAAAGTAAATCCACACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR TCA 90 bp | TTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTACTACAGATTTGCTCTACCTGCTaGGGAGGTATCGAAGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LNMIKKTSTMLHTLSLLQICSTC*GGIEGS Trigger: AGAGCCTTCGATACCTCCTCAGCAGGTAGAGCAAAT...CTGTAGTAGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | AAGATCAGTCAGCACAACCTCACAAATTCTTGCTCAGTGTGGATTTACTTTAAACATTCAGGTTGCTGGTaGTCTGCTCTGGCTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: KISQHNLTNSCSVWIYFKHSGCW*SALARG Trigger: TCCTCGAGCCAGAGCAGAGCACCAGCAACCTGAATG...TTTAAAGTAAATCCACACTGAGCAAGAATTTGTGAGGTTGTGCTGACTGATCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | TTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGACTCAAACCACAGTTTCTTTTCATTCAGGTTaGTGGTGCTCTGCTCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: FTDGKTFFSSCQGTQTTVSFHSG*WCSALA Trigger: AGCCAGAGCAGAGCACCAGCAACCTGAATGAAAAGA...AACTGTGGTTTGAGTCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR CAA 72 bp | CACACACTATCCCTACTACAGTGGTTAACCAGACCGTaGGTTTCACTGATGGGAAGACATTTTTCTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: HTLSLLQWLTRP*VSLMGRHFSLP Trigger: AGGAAGAGAAAAATGTCTTCCCATCAGTGAAACCAACGGTCTGGTTAACCACTGTAGTAGGGATAGTGTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| 3UTR CAA 72 bp | CCAACTATCTGCACCTATGACTTCAGTTACTGTGACTaGTTTCCCTGTCAGAACATGGACACTAAGCACTCT | + |
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Preference number: 4 (lower is better) Translates to: PTICTYDFSYCD*FPCQNMDTKHS Trigger: AGAGTGCTTAGTGTCCATGTTCTGACAGGGAAACAAGTCACAGTAACTGAAGTCATAGGTGCAGATAGTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | ATTTACTTTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTGGCTCTGGGTCTATTTaGCCGGCTTTCCGCTTAACT | + |
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Preference number: 4 (lower is better) Translates to: IYFKHDQEDKHDASHTIPGSGSI*PAFRLT Trigger: AGTTAAGCGGAAAGCCGGGCAAATAGACCCAGAGCC...AGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAAAGTAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CCA 90 bp | CAGGGGAATGTCTGCTTCCATGATCTCATTATTCAAGCAAACATCCAAACACCTTGGGGGAAGTTCTACTaGTGGTATTTCCATTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: QGNVCFHDLIIQANIQTPWGKFY*WYFHLL Trigger: GAGCAAATGGAAATACCACCAGTAGAACTTCCCCCA...AGGTGTTTGGATGTTTGCTTGAATAATGAGATCATGGAAGCAGACATTCCCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR TCA 90 bp | GTTTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGACTCAAACCACAGTGGCTTTTGTCTCTTTaGCAGTTATATCAATGGGCT | + |
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Preference number: 4 (lower is better) Translates to: VSLMGRHFSLPVKGLKPQWLLSL*QLYQWA Trigger: AGCCCATTGATATAACTGTCAAAGAGACAAAAGCCA...CTGTGGTTTGAGTCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | TTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTACTACAGAAAGCTGTAGAACTTTaGTGCTGCCTGCTTTCGGTT | + |
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Preference number: 4 (lower is better) Translates to: LNMIKKTSTMLHTLSLLQKAVEL*CCLLSV Trigger: AACCGAAAGCAGGCAGCAGCAAAGTTCTACAGCTTT...CTGTAGTAGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CCA 90 bp | CAGTGTGGATTTACTTTAAACATGATCAAGAAGACAAGCACGATGCTTCACACATTCAGGCTGAACTGCTaGGCGACGTCAATATCATCT | + |
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Preference number: 4 (lower is better) Translates to: QCGFTLNMIKKTSTMLHTFRLNC*ATSISS Trigger: AGATGATATTGACGTCGCCCAGCAGTTCAGCCTGAA...TGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAAAGTAAATCCACACTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR TCA 90 bp | ATTTACTTTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTCATCTTCACCTTTGGTaGGATGATGCTCTCCACACT | + |
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Preference number: 4 (lower is better) Translates to: IYFKHDQEDKHDASHTIPHLHLW*DDALHT Trigger: AGTGTGGAGAGCATCATCTCACCAAAGGTGAAGATG...AGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAAAGTAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR TCA 90 bp | TTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGACTCAAACCACAGTTTCTTCGTACTCTAAGTaGTTCATCTTTTCATTCAGG | + |
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Preference number: 4 (lower is better) Translates to: FTDGKTFFSSCQGTQTTVSSYSK*FIFSFR Trigger: CCTGAATGAAAAGATGAATCACTTAGAGTACGAAGA...AACTGTGGTTTGAGTCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | AAGATCAGTCAGCACAACCTCACAAATTCTTGCTCAGTGTGGATTTACTTTAAAAACTTTGCTGCTGCCTaGTTTCGGTTTGTGTTTCGA | + |
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Preference number: 4 (lower is better) Translates to: KISQHNLTNSCSVWIYFKNFAAA*FRFVFR Trigger: TCGAAACACAAACCGAAAGCAGGCAGCAGCAAAGTT...TTTAAAGTAAATCCACACTGAGCAAGAATTTGTGAGGTTGTGCTGACTGATCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CCA 90 bp | ATTTACTTTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTCTCTCTGGGAACCTCTaGATTCTCAAACTCTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: IYFKHDQEDKHDASHTIPLSGNL*ILKLFE Trigger: CTCAAAGAGTTTGAGAATCCAGAGGTTCCCAGAGAG...AGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAAAGTAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CCA 90 bp | AGAAGATCAGTCAGCACAACCTCACAAATTCTTGCTCAGTGTGGATTTACTTTAGGGAAGTTCTACTGGTaGTATTTCCATTTGCTCTAC | + |
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Preference number: 4 (lower is better) Translates to: RRSVSTTSQILAQCGFTLGKFYW*YFHLLY Trigger: GTAGAGCAAATGGAAATACCACCAGTAGAACTTCCC...TAAAGTAAATCCACACTGAGCAAGAATTTGTGAGGTTGTGCTGACTGATCTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CCA 90 bp | AAGATCAGTCAGCACAACCTCACAAATTCTTGCTCAGTGTGGATTTACTTTAAAGATAATATGGAACCGTaGTCCAGGGGTTGCAATGAT | + |
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Preference number: 4 (lower is better) Translates to: KISQHNLTNSCSVWIYFKDNMEP*SRGCND Trigger: ATCATTGCAACCCCTGGACCACGGTTCCATATTATC...TTTAAAGTAAATCCACACTGAGCAAGAATTTGTGAGGTTGTGCTGACTGATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR GCA 90 bp | ATTTACTTTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTCATCCTCGAAAGCACTaGCTTCTCTCATTATTTCAC | + |
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Preference number: 4 (lower is better) Translates to: IYFKHDQEDKHDASHTIPHPRKH*LLSLFH Trigger: GTGAAATAATGAGAGAAGGCAGTGCTTTCGAGGATG...AGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAAAGTAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS CCA 90 bp | TGGCTCTTCTATAATGGGCTCATCGATGACATCTCGCTGCGGCTGTaGCTGCTGCTGCTGTGGCTGCTGCTCCTCTCTGGGAACCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: WLFYNGLIDDISLRL*LLLLWLLLLSGNLW Trigger: CCAGAGGTTCCCAGAGAGGAGCAGCAGCCACAGCAGCAGCAGCCACAGCCGCAGCGAGATGTCATCGATGAGCCCATTATAGAAGAGCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CAA 90 bp | GCTGCCTTTCAACAAGCTGTCAGACAATGGTCAGTAGTGTTCGTGGAACTACTGTTTCCGCTTAACTCCTaGAGGGGGTGGTGGGGGCAT | + |
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Preference number: 5 (lower is better) Translates to: AAFQQAVRQWSVVFVELLFPLNS*RGWWGH Trigger: ATGCCCCCACCACCCCCTCAAGGAGTTAAGCGGAAA...CAGTAGTTCCACGAACACTACTGACCATTGTCTGACAGCTTGTTGAAAGGCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS GCA 90 bp | GGTCTTCGTACTCTAAGTGATTCATCTTTTCATTCAGGTTGCTGGTaGTCTGCTCTGGCTCGAGGAGAAGGTTGGAAGCGCTGGTGCTCA | + |
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Preference number: 5 (lower is better) Translates to: GLRTLSDSSFHSGCW*SALARGEGWKRWCS Trigger: TGAGCACCAGCGCTTCCAACCTTCTCCTCGAGCCAGAGCAGAGCACCAGCAACCTGAATGAAAAGATGAATCACTTAGAGTACGAAGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS CCA 90 bp | ACTGGTCTTCGTACTCTAAGTGATTCATCTTTTCATTCAGGTTGCTaGTGCTCTGCTCTGGCTCGAGGAGAAGGTTGGAAGCGCTGGTGC | + |
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Preference number: 5 (lower is better) Translates to: TGLRTLSDSSFHSGC*CSALARGEGWKRWC Trigger: GCACCAGCGCTTCCAACCTTCTCCTCGAGCCAGAGCAGAGCACCAGCAACCTGAATGAAAAGATGAATCACTTAGAGTACGAAGACCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CAA 90 bp | TTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGACTCAAACCACAGTTAGGCTCTGGGTCTATTaGCCCGGCTTTCCGCTTAAC | + |
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Preference number: 5 (lower is better) Translates to: FTDGKTFFSSCQGTQTTVRLWVY*PGFPLN Trigger: GTTAAGCGGAAAGCCGGGCAAATAGACCCAGAGCCT...AACTGTGGTTTGAGTCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CAA 90 bp | TTTCAACAAGCTGTCAGACAATGGTCAGTAGTGTTCGTGGAACTACTGAACTTTCTCTTCTACTCTGCTTaGGTTCAGGCTGAACTGCTG | + |
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Preference number: 5 (lower is better) Translates to: FQQAVRQWSVVFVELLNFLFYSA*VQAELL Trigger: CAGCAGTTCAGCCTGAACCAAAGCAGAGTAGAAGAG...AAAGTTCAGTAGTTCCACGAACACTACTGACCATTGTCTGACAGCTTGTTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CAA 90 bp | TTAAACATGATCAAGAAGACAAGCACGATGCTTCACACACTATCCCTACTACAGCTGATTCTTCTATGGTaGTTCTGCTGGCCTCCATCA | + |
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Preference number: 5 (lower is better) Translates to: LNMIKKTSTMLHTLSLLQLILLW*FCWPPS Trigger: TGATGGAGGCCAGCAGAACAACCATAGAAGAATCAG...CTGTAGTAGGGATAGTGTGTGAAGCATCGTGCTTGTCTTCTTGATCATGTTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CAA 90 bp | TTCACTGATGGGAAGACATTTTTCTCTTCCTGTCAAGGGACTCAAACCACAGTTTTGGCTTTTGTCTCTTaGACAGTTATATCAATGGGC | + |
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Preference number: 5 (lower is better) Translates to: FTDGKTFFSSCQGTQTTVLAFVS*TVISMG Trigger: GCCCATTGATATAACTGTCAAAGAGACAAAAGCCAA...AACTGTGGTTTGAGTCCCTTGACAGGAAGAGAAAAATGTCTTCCCATCAGTGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CAA 90 bp | AAGATCAGTCAGCACAACCTCACAAATTCTTGCTCAGTGTGGATTTACTTTAAAACACTGCTCTCTAAGTaGCACTCAAATACATGGGCT | + |
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Preference number: 5 (lower is better) Translates to: KISQHNLTNSCSVWIYFKTLLSK*HSNTWA Trigger: AGCCCATGTATTTGAGTGCAACTTAGAGAGCAGTGT...TTTAAAGTAAATCCACACTGAGCAAGAATTTGTGAGGTTGTGCTGACTGATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS-3UTR CAA 90 bp | AAGATCAGTCAGCACAACCTCACAAATTCTTGCTCAGTGTGGATTTACTTTAAAGGATTCTCAAACTCTTaGAGGAACTCATCCAGATTA | + |
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Preference number: 5 (lower is better) Translates to: KISQHNLTNSCSVWIYFKGFSNS*RNSSRL Trigger: TAATCTGGATGAGTTCCTCAAAGAGTTTGAGAATCC...TTTAAAGTAAATCCACACTGAGCAAGAATTTGTGAGGTTGTGCTGACTGATCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS CCA 72 bp | GATGACATCTCGCTGCGGCTGTGGCTGCTGCTGCTGTaGCTGCTGCTCCTCTCTGGGAACCTCTGGATTCTC | + |
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Preference number: 6 (lower is better) Translates to: DDISLRLWLLLL*LLLLSGNLWIL Trigger: GAGAATCCAGAGGTTCCCAGAGAGGAGCAGCAGCCACAGCAGCAGCAGCCACAGCCGCAGCGAGATGTCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS GCA 72 bp | GGCTCTTCTATAATGGGCTCATCGATGACATCTCGCTaGGGCTGTGGCTGCTGCTGCTGTGGCTGCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: GSSIMGSSMTSR*GCGCCCCGCCS Trigger: GGAGCAGCAGCCACAGCAGCAGCAGCCACAGCCGCAGCGAGATGTCATCGATGAGCCCATTATAGAAGAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS GCA 72 bp | GTGGTGGGGGCATGGCTGATTCTTCTATGGTTGTTCTaGTGGCCTCCATCACTGAGTCCTGGAGGCGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VVGAWLILLWLF*WPPSLSPGGGL Trigger: CAAGCCGCCTCCAGGACTCAGTGATGGAGGCCAGCAGAACAACCATAGAAGAATCAGCCATGCCCCCACCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS TCA 72 bp | AGGATCCACAGAGTCGGGACTATCCGGCCCACCCAGTaGGCCATTGTCATCTTCATCCATGTCATCATGTGC | + |
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Preference number: 6 (lower is better) Translates to: RIHRVGTIRPTQ*AIVIFIHVIMC Trigger: GCACATGATGACATGGATGAAGATGACAATGGCTCACTGGGTGGGCCGGATAGTCCCGACTCTGTGGATCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS GCA 72 bp | ACTCTAAGTGATTCATCTTTTCATTCAGGTTGCTGGTaGTCTGCTCTGGCTCGAGGAGAAGGTTGGAAGCGC | + |
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Preference number: 6 (lower is better) Translates to: TLSDSSFHSGCW*SALARGEGWKR Trigger: GCGCTTCCAACCTTCTCCTCGAGCCAGAGCAGAGCACCAGCAACCTGAATGAAAAGATGAATCACTTAGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS CCA 72 bp | CGTACTCTAAGTGATTCATCTTTTCATTCAGGTTGCTaGTGCTCTGCTCTGGCTCGAGGAGAAGGTTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RTLSDSSFHSGC*CSALARGEGWK Trigger: CTTCCAACCTTCTCCTCGAGCCAGAGCAGAGCACCAGCAACCTGAATGAAAAGATGAATCACTTAGAGTACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022927.11 |
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| CDS TCA 72 bp | TCATGGTTATCTCTTCTACTCTGCTTTGGTTCAGGCTaGACTGCTGGGCGACGTCAATATCATCTAAATCTG | + |
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Preference number: 6 (lower is better) Translates to: SWLSLLLCFGSG*TAGRRQYHLNL Trigger: CAGATTTAGATGATATTGACGTCGCCCAGCAGTTCAGCCTGAACCAAAGCAGAGTAGAAGAGATAACCATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022927.11 ENSMUST00000226529.2 |
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