Pregenerated sensors for RAD17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021635Ensembl transcript IDs: ENSMUST00000022136.14, ENSMUST00000177848.3, ENSMUST00000226050.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGATCGCTCCCGCTGTTCTGACTCAGCGGAAGGGACCAGGTCTCTaGGTCGGCATTCTGAGCAGCCTGCGCGGGTTCACCGGGAGCTTC | + |
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Preference number: 1 (lower is better) Translates to: QIAPAVLTQRKGPGL*VGILSSLRGFTGSF Trigger: GAAGCTCCCGGTGAACCCGCGCAGGCTGCTCAGAATGCCGACCCAGAGACCTGGTCCCTTCCGCTGAGTCAGAACAGCGGGAGCGATCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR GCA 90 bp | CTGACACTGTCAGAGACTATAAATACAAGAGGACACCGGCCAATCTaGACATGCTTTCTTAGAATCTCATGTAAAGCGTTAGGGTCTCGA | + |
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Preference number: 1 (lower is better) Translates to: LTLSETINTRGHRPI*TCFLRISCKALGSR Trigger: TCGAGACCCTAACGCTTTACATGAGATTCTAAGAAAGCATGTGCAGATTGGCCGGTGTCCTCTTGTATTTATAGTCTCTGACAGTGTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR TCA 90 bp | CTGTACTTGGTGGCTCTTAATAGAAAGTCATTGAAGACTGCTATCTaGGATTGGTATGGAACTACAGAGAAGTTTGATTCTAAACTAAGT | + |
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Preference number: 1 (lower is better) Translates to: LYLVALNRKSLKTAI*DWYGTTEKFDSKLS Trigger: ACTTAGTTTAGAATCAAACTTCTCTGTAGTTCCATACCAATCTCAGATAGCAGTCTTCAATGACTTTCTATTAAGAGCCACCAAGTACAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR-3UTR GCA 90 bp | ATTCTGAGCAGCCTGCGCGGGTTCACCGGGAGCTTCCTGAGCCGGCTGCCCTCCGGACACCGGCCAATCTaGACATGCTTTCTTAGAATC | + |
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Preference number: 2 (lower is better) Translates to: ILSSLRGFTGSFLSRLPSGHRPI*TCFLRI Trigger: GATTCTAAGAAAGCATGTGCAGATTGGCCGGTGTCC...GGAGGGCAGCCGGCTCAGGAAGCTCCCGGTGAACCCGCGCAGGCTGCTCAGAAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR-3UTR GCA 90 bp | ATTCTGAGCAGCCTGCGCGGGTTCACCGGGAGCTTCCTGAGCCGGCTGCCCTCCGAGCAATTAACAAATTaGTTGTCCTTCAGAGACGTG | + |
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Preference number: 2 (lower is better) Translates to: ILSSLRGFTGSFLSRLPSEQLTN*LSFRDV Trigger: CACGTCTCTGAAGGACAAGCAATTTGTTAATTGCTC...GGAGGGCAGCCGGCTCAGGAAGCTCCCGGTGAACCCGCGCAGGCTGCTCAGAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGTTCTGACTCAGCGGAAGGGACCAGGTCTCTGGGTCGGCATTCTGAGCAGCTCGTCTCCAAGCATCTaGAGTTTGCTGTACTTGGTG | + |
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Preference number: 2 (lower is better) Translates to: AVLTQRKGPGLWVGILSSSSPSI*SLLYLV Trigger: CACCAAGTACAGCAAACTGCAGATGCTTGGAGACGA...GCTGCTCAGAATGCCGACCCAGAGACCTGGTCCCTTCCGCTGAGTCAGAACAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGTTCTGACTCAGCGGAAGGGACCAGGTCTCTGGGTCGGCATTCTGAGCAGCATGACAGTCGTCAGTTaGTGTGACGAATACGATAAG | + |
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Preference number: 2 (lower is better) Translates to: AVLTQRKGPGLWVGILSSMTVVS*CDEYDK Trigger: CTTATCGTATTCGTCACAGCAACTGACGACTGTCAT...GCTGCTCAGAATGCCGACCCAGAGACCTGGTCCCTTCCGCTGAGTCAGAACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR-3UTR CCA 90 bp | CTACTATTTCCTCAGGCTGAACAAGTAAAGTGTCCCGGTCGTGCTCTGACAAGTGCAGTTTGCTGTACTTaGTGGCTCTTAATAGAAAGT | + |
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Preference number: 2 (lower is better) Translates to: LLFPQAEQVKCPGRALTSAVCCT*WLLIES Trigger: ACTTTCTATTAAGAGCCACCAAGTACAGCAAACTGC...ACTTGTCAGAGCACGACCGGGACACTTTACTTGTTCAGCCTGAGGAAATAGTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAAGAGCAATTAACAAATTaGTTGTCCTTCAGAGACGTG | + |
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Preference number: 2 (lower is better) Translates to: LLYFKMTVVSCCDEYDKEEQLTN*LSFRDV Trigger: CACGTCTCTGAAGGACAAGCAATTTGTTAATTGCTC...TTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| 3UTR-3UTR TCA 90 bp | ATTCCACTGTACAACATACCAAAAATGGTATCCGAAAAGCTAGATGCAAACTGTATAAATACTAAGCACTaGGTACTTGAGACCTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: IPLYNIPKMVSEKLDANCINTKH*VLETCF Trigger: AAAGCAGGTCTCAAGTACTCAGTGCTTAGTATTTAT...ACAGTTTGCATCTAGCTTTTCGGATACCATTTTTGGTATGTTGTACAGTGGAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022136.14 |
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| 3UTR CCA 72 bp | CCCGCTGTTCTGACTCAGCGGAAGGGACCAGGTCTCTaGGTCGGCATTCTGAGCAGCCTGCGCGGGTTCACC | + |
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Preference number: 3 (lower is better) Translates to: PAVLTQRKGPGL*VGILSSLRGFT Trigger: GGTGAACCCGCGCAGGCTGCTCAGAATGCCGACCCAGAGACCTGGTCCCTTCCGCTGAGTCAGAACAGCGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR-3UTR CAA 90 bp | CTACTATTTCCTCAGGCTGAACAAGTAAAGTGTCCCGGTCGTGCTCTGACAAGTACATTCTTTTCTTCTTaGACCACGAACTGTTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: LLFPQAEQVKCPGRALTSTFFSS*TTNCSL Trigger: GAGAGAACAGTTCGTGGTCAAAGAAGAAAAGAATGT...ACTTGTCAGAGCACGACCGGGACACTTTACTTGTTCAGCCTGAGGAAATAGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR TCA 72 bp | CTGAATAGACTAAAATTTATCTCTCAAGGAGCAACCTaGTTGGCAGGCTGTTCTCTATGTCTCCTCGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: LNRLKFISQGAT*LAGCSLCLLAV Trigger: GACAGCGAGGAGACATAGAGAACAGCCTGCCAATCAGGTTGCTCCTTGAGAGATAAATTTTAGTCTATTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR GCA 72 bp | TCAGAGACTATAAATACAAGAGGACACCGGCCAATCTaGACATGCTTTCTTAGAATCTCATGTAAAGCGTTA | + |
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Preference number: 3 (lower is better) Translates to: SETINTRGHRPI*TCFLRISCKAL Trigger: TAACGCTTTACATGAGATTCTAAGAAAGCATGTGCAGATTGGCCGGTGTCCTCTTGTATTTATAGTCTCTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| 3UTR TCA 72 bp | GTGGCTCTTAATAGAAAGTCATTGAAGACTGCTATCTaGGATTGGTATGGAACTACAGAGAAGTTTGATTCT | + |
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Preference number: 3 (lower is better) Translates to: VALNRKSLKTAI*DWYGTTEKFDS Trigger: AGAATCAAACTTCTCTGTAGTTCCATACCAATCTCAGATAGCAGTCTTCAATGACTTTCTATTAAGAGCCAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| CDS-3UTR TCA 90 bp | ATTCTGAGCAGCCTGCGCGGGTTCACCGGGAGCTTCCTGAGCCGGCTGCCCTCCGACAGAACAACACCCTaGTTCTTCTCCTCTCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: ILSSLRGFTGSFLSRLPSDRTTP*FFSSLH Trigger: ATGCAGAGAGGAGAAGAATCAGGGTGTTGTTCTGTC...GGAGGGCAGCCGGCTCAGGAAGCTCCCGGTGAACCCGCGCAGGCTGCTCAGAAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| CDS-3UTR TCA 90 bp | ATTCTGAGCAGCCTGCGCGGGTTCACCGGGAGCTTCCTGAGCCGGCTGCCCTCCTGTGACTGGAGTTACTaGAAGTTAAAGATGACGCAG | + |
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Preference number: 4 (lower is better) Translates to: ILSSLRGFTGSFLSRLPSCDWSY*KLKMTQ Trigger: CTGCGTCATCTTTAACTTTCAGTAACTCCAGTCACA...GGAGGGCAGCCGGCTCAGGAAGCTCCCGGTGAACCCGCGCAGGCTGCTCAGAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| CDS-3UTR TCA 90 bp | TTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAACTGAGCAATGATCCTCCTTGGCAGTaGGCGAACCCCCGGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: FKMTVVSCCDEYDKELSNDPPWQ*ANPRAL Trigger: CAAAGCCCGGGGGTTCGCTCACTGCCAAGGAGGATC...ATTGCTCAGTTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR TCA 90 bp | CTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAATCGTGCTCTGACAAGTaGGCAGGCAGGCGAGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: LLYFKMTVVSCCDEYDKESCSDK*AGRRGE Trigger: CTCACCTCGCCTGCCTGCTCACTTGTCAGAGCACGA...TTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR TCA 90 bp | GGAACTGAGCAATTAACAAATTGCTTGTCCTTCAGAGACGTGTTCAAGTACCACTCGTGCTCTGACAAGTaGGCAGGCAGGCGAGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: GTEQLTNCLSFRDVFKYHSCSDK*AGRRGE Trigger: CTCACCTCGCCTGCCTGCTCACTTGTCAGAGCACGA...GTGGTACTTGAACACGTCTCTGAAGGACAAGCAATTTGTTAATTGCTCAGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | GGAACTGAGCAATTAACAAATTGCTTGTCCTTCAGAGACGTGTTCAAGTACCACAAGGGACCAGGTCTCTaGGTCGGCATTCTGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: GTEQLTNCLSFRDVFKYHKGPGL*VGILSS Trigger: GCTGCTCAGAATGCCGACCCAGAGACCTGGTCCCTT...GTGGTACTTGAACACGTCTCTGAAGGACAAGCAATTTGTTAATTGCTCAGTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR TCA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCATTGGAGGAAAAGGGCTaGGGCTGGCTGGCAGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: QRRVQVPLNRLKFISQGALEEKG*GWLAGR Trigger: TCTGCCTGCCAGCCAGCCTCAGCCCTTTTCCTCCAA...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCAAAGGGACCAGGTCTCTaGGTCGGCATTCTGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: QRRVQVPLNRLKFISQGAKGPGL*VGILSS Trigger: GCTGCTCAGAATGCCGACCCAGAGACCTGGTCCCTT...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR GCA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGTCGTCTCCAAGCATCTaGAGTTTGCTGTACTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKSSPSI*SLLYLV Trigger: CACCAAGTACAGCAAACTGCAGATGCTTGGAGACGA...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR GCA 90 bp | CTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAAGGACACCGGCCAATCTaGACATGCTTTCTTAGAATC | + |
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Preference number: 4 (lower is better) Translates to: LLYFKMTVVSCCDEYDKEGHRPI*TCFLRI Trigger: GATTCTAAGAAAGCATGTGCAGATTGGCCGGTGTCC...TTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGCTTCTTGAATGTTTCTaGGGAAGAGTAGCCGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKLLECF*GRVAAD Trigger: ATCAGCGGCTACTCTTCCCCAGAAACATTCAAGAAG...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | CTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAACAGAAACTCACTGGCTaGCACAAGATCATCTACTTC | + |
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Preference number: 4 (lower is better) Translates to: LLYFKMTVVSCCDEYDKEQKLTG*HKIIYF Trigger: GAAGTAGATGATCTTGTGCCAGCCAGTGAGTTTCTG...TTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR TCA 90 bp | TTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAACTGAGCAATTGTGACTGGAGTTACTaGAAGTTAAAGATGACGCAG | + |
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Preference number: 4 (lower is better) Translates to: FKMTVVSCCDEYDKELSNCDWSY*KLKMTQ Trigger: CTGCGTCATCTTTAACTTTCAGTAACTCCAGTCACA...ATTGCTCAGTTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS-3UTR GCA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCATCGTCTCCAAGCATCTaGAGTTTGCTGTACTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: QRRVQVPLNRLKFISQGASSPSI*SLLYLV Trigger: CACCAAGTACAGCAAACTGCAGATGCTTGGAGACGA...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGCAGTTTGCTGTACTTaGTGGCTCTTAATAGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKAVCCT*WLLIES Trigger: ACTTTCTATTAAGAGCCACCAAGTACAGCAAACTGC...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | TTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAACTGAGCAATAACTCAGAAACTCACTaGCTGGCACAAGATCATCTA | + |
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Preference number: 4 (lower is better) Translates to: FKMTVVSCCDEYDKELSNNSETH*LAQDHL Trigger: TAGATGATCTTGTGCCAGCCAGTGAGTTTCTGAGTT...ATTGCTCAGTTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCACAGAAGAGCAAGATATaGCAAGAGCTGAGTCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: QRRVQVPLNRLKFISQGAQKSKI*QELSLE Trigger: CTCCAGACTCAGCTCTTGCCATATCTTGCTCTTCTG...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGAGCTTTATTTCGCATTaGAATGGTCAGAAGAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKSFISH*NGQKSK Trigger: CTTGCTCTTCTGACCATTCCAATGCGAAATAAAGCT...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGTTTGCTGTACTTGGTaGCTCTTAATAGAAAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKVCCTW*LLIESH Trigger: ATGACTTTCTATTAAGAGCCACCAAGTACAGCAAAC...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | TTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAACTGAGCAATGCAGTTTGCTGTACTTaGTGGCTCTTAATAGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: FKMTVVSCCDEYDKELSNAVCCT*WLLIES Trigger: ACTTTCTATTAAGAGCCACCAAGTACAGCAAACTGC...ATTGCTCAGTTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR TCA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCATGTGACTGGAGTTACTaGAAGTTAAAGATGACGCAG | + |
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Preference number: 4 (lower is better) Translates to: QRRVQVPLNRLKFISQGACDWSY*KLKMTQ Trigger: CTGCGTCATCTTTAACTTTCAGTAACTCCAGTCACA...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS-3UTR TCA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCACATTCTTTTCTTCTTTaGCCACGAACTGTTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: QRRVQVPLNRLKFISQGAHSFLL*PRTVLS Trigger: GGAGAGAACAGTTCGTGGTCAAAGAAGAAAAGAATG...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCAAACTCAGAAACTCACTaGCTGGCACAAGATCATCTA | + |
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Preference number: 4 (lower is better) Translates to: QRRVQVPLNRLKFISQGANSETH*LAQDHL Trigger: TAGATGATCTTGTGCCAGCCAGTGAGTTTCTGAGTT...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CCA 90 bp | GGAACTGAGCAATTAACAAATTGCTTGTCCTTCAGAGACGTGTTCAAGTACCACTATTTCGCATTGGAATaGTCAGAAGAGCAAGATATG | + |
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Preference number: 4 (lower is better) Translates to: GTEQLTNCLSFRDVFKYHYFALE*SEEQDM Trigger: CATATCTTGCTCTTCTGACCATTCCAATGCGAAATA...GTGGTACTTGAACACGTCTCTGAAGGACAAGCAATTTGTTAATTGCTCAGTTCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR TCA 90 bp | ATTCCACTGTACAACATACCAAAAATGGTATCCGAAAAGCTAGATGCAAACTGTCATTCTTTTCTTCTTTaGCCACGAACTGTTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: IPLYNIPKMVSEKLDANCHSFLL*PRTVLS Trigger: GGAGAGAACAGTTCGTGGTCAAAGAAGAAAAGAATG...ACAGTTTGCATCTAGCTTTTCGGATACCATTTTTGGTATGTTGTACAGTGGAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022136.14 |
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| CDS-3UTR CCA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCAAGCTTTATTTCGCATTaGAATGGTCAGAAGAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: QRRVQVPLNRLKFISQGASFISH*NGQKSK Trigger: CTTGCTCTTCTGACCATTCCAATGCGAAATAAAGCT...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR GCA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCACATCAGAAAAATGTTTaGTTCATAAGCATGAACCCA | + |
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Preference number: 4 (lower is better) Translates to: QRRVQVPLNRLKFISQGAHQKNV*FISMNP Trigger: TGGGTTCATGCTTATGAAGCAAACATTTTTCTGATG...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| CDS-3UTR CCA 90 bp | ATTCCACTGTACAACATACCAAAAATGGTATCCGAAAAGCTAGATGCAAACTGTGTTTGCTGTACTTGGTaGCTCTTAATAGAAAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: IPLYNIPKMVSEKLDANCVCCTW*LLIESH Trigger: ATGACTTTCTATTAAGAGCCACCAAGTACAGCAAAC...ACAGTTTGCATCTAGCTTTTCGGATACCATTTTTGGTATGTTGTACAGTGGAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022136.14 |
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| CDS-3UTR CCA 90 bp | ATTCCACTGTACAACATACCAAAAATGGTATCCGAAAAGCTAGATGCAAACTGTTATTTCGCATTGGAATaGTCAGAAGAGCAAGATATG | + |
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Preference number: 4 (lower is better) Translates to: IPLYNIPKMVSEKLDANCYFALE*SEEQDM Trigger: CATATCTTGCTCTTCTGACCATTCCAATGCGAAATA...ACAGTTTGCATCTAGCTTTTCGGATACCATTTTTGGTATGTTGTACAGTGGAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022136.14 |
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| CDS TCA 90 bp | TGTTTGCTTCATAAGCATGAACCCAAGTTAGAGTCCTGGCACTCATaGGCTGGGGCTGGGTGTGAAGCTTCTGGCAGAACGCCTGGTCAG | + |
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Preference number: 5 (lower is better) Translates to: CLLHKHEPKLESWHS*AGAGCEASGRTPGQ Trigger: CTGACCAGGCGTTCTGCCAGAAGCTTCACACCCAGCCCCAGCTCATGAGTGCCAGGACTCTAACTTGGGTTCATGCTTATGAAGCAAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| CDS-3UTR CAA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGCGAACCCCCGGGCTTaGTTGGAATGCATCACACCT | + |
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Preference number: 5 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKANPRA*LECITP Trigger: AGGTGTGATGCATTCCAACAAAGCCCGGGGGTTCGC...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGCCCAGTCTGTCACCTTaGTGGAAGACACCTTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKPSLSP*WKTPLV Trigger: GACCAAAGGTGTCTTCCACAAAGGTGACAGACTGGG...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS TCA 90 bp | CACGGCTCATTGTCGGACAGACGCTCTCTTGAAGTTTCTAGACCATaGGTCTGTTCTAAAGAGAGCCTTCCTCTTTTTCTAGCCGACAAT | + |
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Preference number: 5 (lower is better) Translates to: HGSLSDRRSLEVSRP*VCSKESLPLFLADN Trigger: ATTGTCGGCTAGAAAAAGAGGAAGGCTCTCTTTAGAACAGACTCATGGTCTAGAAACTTCAAGAGAGCGTCTGTCCGACAATGAGCCGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS-3UTR CAA 90 bp | TTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAACTGAGCAATCCCAGTCTGTCACCTTaGTGGAAGACACCTTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: FKMTVVSCCDEYDKELSNPSLSP*WKTPLV Trigger: GACCAAAGGTGTCTTCCACAAAGGTGACAGACTGGG...ATTGCTCAGTTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS-3UTR CAA 90 bp | TTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAACTGAGCAATGTGGTGATGGCGGTGTaGGCCTCAAAGTCATCAAAG | + |
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Preference number: 5 (lower is better) Translates to: FKMTVVSCCDEYDKELSNVVMAV*ASKSSK Trigger: CTTTGATGACTTTGAGGCCAACACCGCCATCACCAC...ATTGCTCAGTTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS-3UTR CAA 90 bp | GGAACTGAGCAATTAACAAATTGCTTGTCCTTCAGAGACGTGTTCAAGTACCACGTAAGGGTCGAAAGCTaGATCCTCCTTGGCAGTGAG | + |
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Preference number: 5 (lower is better) Translates to: GTEQLTNCLSFRDVFKYHVRVES*ILLGSE Trigger: CTCACTGCCAAGGAGGATCAAGCTTTCGACCCTTAC...GTGGTACTTGAACACGTCTCTGAAGGACAAGCAATTTGTTAATTGCTCAGTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGCAGACCCACCCTGTTTaGGCTTCACTTCTAAGACTT | + |
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Preference number: 5 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKQTHPV*ASLLRL Trigger: AAGTCTTAGAAGTGAAGCCAAAACAGGGTGGGTCTG...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCACCCAGTCTGTCACCTTaGTGGAAGACACCTTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: QRRVQVPLNRLKFISQGAPSLSP*WKTPLV Trigger: GACCAAAGGTGTCTTCCACAAAGGTGACAGACTGGG...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS-3UTR CAA 90 bp | GGAACTGAGCAATTAACAAATTGCTTGTCCTTCAGAGACGTGTTCAAGTACCACCAGACCCACCCTGTTTaGGCTTCACTTCTAAGACTT | + |
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Preference number: 5 (lower is better) Translates to: GTEQLTNCLSFRDVFKYHQTHPV*ASLLRL Trigger: AAGTCTTAGAAGTGAAGCCAAAACAGGGTGGGTCTG...GTGGTACTTGAACACGTCTCTGAAGGACAAGCAATTTGTTAATTGCTCAGTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGTGCAGTTTGCTGTACTaGGTGGCTCTTAATAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKCSLLY*VALNRK Trigger: CTTTCTATTAAGAGCCACCAAGTACAGCAAACTGCA...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGAACAGAACACTCTTCTaGAATGTTTCTGGGGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKNRTLF*NVSGEE Trigger: CTCTTCCCCAGAAACATTCAAGAAGAGTGTTCTGTT...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | ATTCCACTGTACAACATACCAAAAATGGTATCCGAAAAGCTAGATGCAAACTGTCGGACAGACGCTCTCTaGAAGTTTCTAGACCATGAG | + |
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Preference number: 5 (lower is better) Translates to: IPLYNIPKMVSEKLDANCRTDAL*KFLDHE Trigger: CTCATGGTCTAGAAACTTCAAGAGAGCGTCTGTCCG...ACAGTTTGCATCTAGCTTTTCGGATACCATTTTTGGTATGTTGTACAGTGGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022136.14 |
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| CDS-3UTR CAA 90 bp | GGAACTGAGCAATTAACAAATTGCTTGTCCTTCAGAGACGTGTTCAAGTACCACTGCAGTTTGCTGTACTaGGTGGCTCTTAATAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: GTEQLTNCLSFRDVFKYHCSLLY*VALNRK Trigger: CTTTCTATTAAGAGCCACCAAGTACAGCAAACTGCA...GTGGTACTTGAACACGTCTCTGAAGGACAAGCAATTTGTTAATTGCTCAGTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | CTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAAAACAGAACACTCTTCTaGAATGTTTCTGGGGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: LLYFKMTVVSCCDEYDKENRTLF*NVSGEE Trigger: CTCTTCCCCAGAAACATTCAAGAAGAGTGTTCTGTT...TTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | GACCTGCTTTACTTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGACATTCTTTTCTTCTTaGACCACGAACTGTTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: DLLYFKMTVVSCCDEYDKTFFSS*TTNCSL Trigger: GAGAGAACAGTTCGTGGTCAAAGAAGAAAAGAATGT...CTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAAGTAAAGCAGGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | TTCAAGATGACAGTCGTCAGTTGCTGTGACGAATACGATAAGGAACTGAGCAATGAGCTTTATTTCGCATaGGAATGGTCAGAAGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: FKMTVVSCCDEYDKELSNELYFA*EWSEEQ Trigger: TTGCTCTTCTGACCATTCCAATGCGAAATAAAGCTC...ATTGCTCAGTTCCTTATCGTATTCGTCACAGCAACTGACGACTGTCATCTTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | GGAACTGAGCAATTAACAAATTGCTTGTCCTTCAGAGACGTGTTCAAGTACCACACATTCTTTTCTTCTTaGACCACGAACTGTTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: GTEQLTNCLSFRDVFKYHTFFSS*TTNCSL Trigger: GAGAGAACAGTTCGTGGTCAAAGAAGAAAAGAATGT...GTGGTACTTGAACACGTCTCTGAAGGACAAGCAATTTGTTAATTGCTCAGTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS-3UTR CAA 90 bp | CAGAGACGTGTTCAAGTACCACTGAATAGACTAAAATTTATCTCTCAAGGAGCAGAGCTTTATTTCGCATaGGAATGGTCAGAAGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: QRRVQVPLNRLKFISQGAELYFA*EWSEEQ Trigger: TTGCTCTTCTGACCATTCCAATGCGAAATAAAGCTC...TGCTCCTTGAGAGATAAATTTTAGTCTATTCAGTGGTACTTGAACACGTCTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 |
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| CDS TCA 72 bp | CATAAGCATGAACCCAAGTTAGAGTCCTGGCACTCATaGGCTGGGGCTGGGTGTGAAGCTTCTGGCAGAACG | + |
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Preference number: 6 (lower is better) Translates to: HKHEPKLESWHS*AGAGCEASGRT Trigger: CGTTCTGCCAGAAGCTTCACACCCAGCCCCAGCTCATGAGTGCCAGGACTCTAACTTGGGTTCATGCTTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| CDS CCA 72 bp | GGTGATGGCGGTGTTGGCCTCAAAGTCATCAAAGGCTaGAGCTACCCAGTCTGTCACCTTTGTGGAAGACAC | + |
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Preference number: 6 (lower is better) Translates to: GDGGVGLKVIKG*SYPVCHLCGRH Trigger: GTGTCTTCCACAAAGGTGACAGACTGGGTAGCTCCAGCCTTTGATGACTTTGAGGCCAACACCGCCATCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS CAA 72 bp | GTTAAAGATGACGCAGTGATGGTGGTGATGGCGGTGTaGGCCTCAAAGTCATCAAAGGCTGGAGCTACCCAG | + |
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Preference number: 6 (lower is better) Translates to: VKDDAVMVVMAV*ASKSSKAGATQ Trigger: CTGGGTAGCTCCAGCCTTTGATGACTTTGAGGCCAACACCGCCATCACCACCATCACTGCGTCATCTTTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS CAA 90 bp | TTACTGAAAGTTAAAGATGACGCAGTGATGGTGGTGATGGCGGTGTaGGCCTCAAAGTCATCAAAGGCTGGAGCTACCCAGTCTGTCACC | + |
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Preference number: 6 (lower is better) Translates to: LLKVKDDAVMVVMAV*ASKSSKAGATQSVT Trigger: GGTGACAGACTGGGTAGCTCCAGCCTTTGATGACTTTGAGGCCAACACCGCCATCACCACCATCACTGCGTCATCTTTAACTTTCAGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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| CDS TCA 72 bp | TTCTGGCAGAACGCCTGGTCAGACAGAACAACACCCTaGTTCTTCTCCTCTCTGCATCCAAAATCCTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: FWQNAWSDRTTP*FFSSLHPKSCF Trigger: AAAACAGGATTTTGGATGCAGAGAGGAGAAGAATCAGGGTGTTGTTCTGTCTGACCAGGCGTTCTGCCAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226050.2 |
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| CDS CAA 72 bp | TATCCACCCACGGCTCATTGTCGGACAGACGCTCTCTaGAAGTTTCTAGACCATGAGTCTGTTCTAAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: YPPTAHCRTDAL*KFLDHESVLKR Trigger: TCTCTTTAGAACAGACTCATGGTCTAGAAACTTCAAGAGAGCGTCTGTCCGACAATGAGCCGTGGGTGGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022136.14 ENSMUST00000177848.3 ENSMUST00000226050.2 |
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