Pregenerated sensors for RAD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022248Ensembl transcript IDs: ENSMUST00000022856.15, ENSMUST00000100775.10, ENSMUST00000168408.2, ENSMUST00000170100.2
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGAATCCAATTTGGTGGAGATTTGCCCCTGCTGCACTGATTAGCTaGAGCCTCGTGACTGGCGAGGGGGCGTGGCCTGCGGTGCGTGGA | + |
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Preference number: 1 (lower is better) Translates to: VNPIWWRFAPAALIS*SLVTGEGAWPAVRG Trigger: TCCACGCACCGCAGGCCACGCCCCCTCGCCAGTCACGAGGCTTCAGCTAATCAGTGCAGCAGGGGCAAATCTCCACCAAATTGGATTCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR TCA 90 bp | TGTTGTGCTGTGTACTCCAGACTAGCAGGACCACAAACTTTGTGCTaGTTCTGGTCACCTCCCATCTGGCCCCGGGGTGCTGGGCTAACA | + |
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Preference number: 1 (lower is better) Translates to: CCAVYSRLAGPQTLC*FWSPPIWPRGAGLT Trigger: TGTTAGCCCAGCACCCCGGGGCCAGATGGGAGGTGACCAGAATCAGCACAAAGTTTGTGGTCCTGCTAGTCTGGAGTACACAGCACAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR GCA 90 bp | ACAACCTCTCCTGTGTGCATCTGTCTGTCAATTTATTCGACGCTTTaGCCACCTGAGACTAGAGACCCGTTCCACGCAGACAAAGGGGCC | + |
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Preference number: 1 (lower is better) Translates to: TTSPVCICLSIYSTL*PPETRDPFHADKGA Trigger: GGCCCCTTTGTCTGCGTGGAACGGGTCTCTAGTCTCAGGTGGGCAAAGCGTCGAATAAATTGACAGACAGATGCACACAGGAGAGGTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR TCA 90 bp | TCAGGCTCAGTGGCTCAGCAGTTGCTCAACATGTGCTCAGTCCCCTaGTTTATATTTCAGGTGACGAGGAACAGGAAATGTGAAGGTAGG | + |
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Preference number: 1 (lower is better) Translates to: SGSVAQQLLNMCSVP*FIFQVTRNRKCEGR Trigger: CCTACCTTCACATTTCCTGTTCCTCGTCACCTGAAATATAAATCAGGGGACTGAGCACATGTTGAGCAACTGCTGAGCCACTGAGCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CCA 90 bp | TGTTTGCTGGTTACTCGGCTTGTCATTGTTAGCTTCAGTCCCGCCTaGAGATGGAACTTCTGCTCTCATCCAGAAGTTCTGATTGCCTCA | + |
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Preference number: 1 (lower is better) Translates to: CLLVTRLVIVSFSPA*RWNFCSHPEVLIAS Trigger: TGAGGCAATCAGAACTTCTGGATGAGAGCAGAAGTTCCATCTCCAGGCGGGACTGAAGCTAACAATGACAAGCCGAGTAACCAGCAAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CCA 90 bp | GAGCCCTTGTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTaGTTCCTGTTAGACCTTCTGTGTTTGCATTCCTCTGTTTTATGT | + |
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Preference number: 1 (lower is better) Translates to: EPLLIPVVNNEFYPR*FLLDLLCLHSSVLC Trigger: ACATAAAACAGAGGAATGCAAACACAGAAGGTCTAACAGGAACCACCTGGGATAGAATTCATTGTTAACAACTGGGATCAACAAGGGCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR GCA 90 bp | TGGAGTCTGGTGTTCTCTCTAACCCATACATTAATTTTCCATTCCTaGATTAGTCTAGTGTATGGATCCACGTGCTCTCTTTTAGTATTA | + |
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Preference number: 1 (lower is better) Translates to: WSLVFSLTHTLIFHS*ISLVYGSTCSLLVL Trigger: TAATACTAAAAGAGAGCACGTGGATCCATACACTAGACTAATGCAGGAATGGAAAATTAATGTATGGGTTAGAGAGAACACCAGACTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR GCA 90 bp | CTTAGTCTGGCAGTCAGAATCAAAGTCCCCAGGTGCAGTCCTGACTCTGCTTTTCGAGGGGGCGTGGCCTaGGGTGCGTGGATGAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: LSLAVRIKVPRCSPDSAFRGGVA*GAWMRE Trigger: CTCTCTCATCCACGCACCGCAGGCCACGCCCCCTCG...AAAAGCAGAGTCAGGACTGCACCTGGGGACTTTGATTCTGACTGCCAGACTAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR GCA 90 bp | CAATTCCAAGTGATAGGAAGTGATGAGCAGTGTTTGGCTGTGGCCAGAGCACACCATCTGGCCCCGGGGTaGTGGGCTAACAGCTCCACA | + |
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Preference number: 2 (lower is better) Translates to: QFQVIGSDEQCLAVARAHHLAPG*WANSST Trigger: TGTGGAGCTGTTAGCCCAGCACCCCGGGGCCAGATG...GTGTGCTCTGGCCACAGCCAAACACTGCTCATCACTTCCTATCACTTGGAATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR TCA 90 bp | TGCGGTGCGTGGATGAGAGAGAGTATAAAAGGAGTGAGAGGCCCAGGGTTCGGGCCCTCTGCCCCTTTTTaGGGCAGTTCTTTCGTTTGT | + |
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Preference number: 2 (lower is better) Translates to: CGAWMRESIKGVRGPGFGPSAPF*GSSFVC Trigger: ACAAACGAAAGAACTGCCTCAAAAAGGGGCAGAGGG...CCCGAACCCTGGGCCTCTCACTCCTTTTATACTCTCTCTCATCCACGCACCGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR TCA 90 bp | CATCACCTGTCATGTCCAGCTCAGAAAAGGCTTCCCGGAGCCCCTCTGACTGCATGGGTCTTATCACAGTaGAAGGCTTCCACCAAGTCG | + |
|
Preference number: 2 (lower is better) Translates to: HHLSCPAQKRLPGAPLTAWVLSQ*KASTKS Trigger: CGACTTGGTGGAAGCCTTTCACTGTGATAAGACCCA...TGCAGTCAGAGGGGCTCCGGGAAGCCTTTTCTGAGCTGGACATGACAGGTGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168408.2 |
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| 3UTR-3UTR GCA 90 bp | TCGAGAGCGGGCGCGACAGTTTATGGATTTGGGAAAGATAGAGACACAAACCACACAGCTCCACAGCACTaGATCCAGCTTTCTCTCCGA | + |
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Preference number: 2 (lower is better) Translates to: SRAGATVYGFGKDRDTNHTAPQH*IQLSLR Trigger: TCGGAGAGAAAGCTGGATGCAGTGCTGTGGAGCTGT...GTGGTTTGTGTCTCTATCTTTCCCAAATCCATAAACTGTCGCGCCCGCTCTCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CAA 90 bp | GGGTTTGGGCTATCCCTCTGCCCCTTTTTGAGGCAGTTCTTTCGTTaGTTGTGCTGTGTACTCCAGACTAGCAGGACCACAAACTTTGTG | + |
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Preference number: 2 (lower is better) Translates to: GFGLSLCPFLRQFFR*LCCVLQTSRTTNFV Trigger: CACAAAGTTTGTGGTCCTGCTAGTCTGGAGTACACAGCACAACAAACGAAAGAACTGCCTCAAAAAGGGGCAGAGGGATAGCCCAAACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR TCA 90 bp | CCTGGGTCTTATCACAGTGAAAGGCTTCCACCAAGTCGGAATCTTTGGGATAGTGTCTCCTCAGGCTCCTaGGTGGTAATTTTGCAGACC | + |
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Preference number: 2 (lower is better) Translates to: PGSYHSERLPPSRNLWDSVSSGS*VVILQT Trigger: GGTCTGCAAAATTACCACTCAGGAGCCTGAGGAGAC...ACTATCCCAAAGATTCCGACTTGGTGGAAGCCTTTCACTGTGATAAGACCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168408.2 |
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| 3UTR-3UTR GCA 90 bp | TGCGGTGCGTGGATGAGAGAGAGTATAAAAGGAGTGAGAGGCCCAGGGTTCGGGACAACCTCTCCTGTGTaGATCTGTCTGTCAATTTAT | + |
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Preference number: 2 (lower is better) Translates to: CGAWMRESIKGVRGPGFGTTSPV*ICLSIY Trigger: ATAAATTGACAGACAGATGCACACAGGAGAGGTTGT...CCCGAACCCTGGGCCTCTCACTCCTTTTATACTCTCTCTCATCCACGCACCGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR GCA 90 bp | TGCGGTGCGTGGATGAGAGAGAGTATAAAAGGAGTGAGAGGCCCAGGGTTCGGGGTGTATGGATCCACGTaGTCTCTTTTAGTATTATCC | + |
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Preference number: 2 (lower is better) Translates to: CGAWMRESIKGVRGPGFGVYGST*SLLVLS Trigger: GGATAATACTAAAAGAGAGCACGTGGATCCATACAC...CCCGAACCCTGGGCCTCTCACTCCTTTTATACTCTCTCTCATCCACGCACCGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR CCA 90 bp | CTTAGTCTGGCAGTCAGAATCAAAGTCCCCAGGTGCAGTCCTGACTCTGCTTTTCAGGTGAATCCAATTTaGTGGAGATTTGCCCCTGCT | + |
|
Preference number: 2 (lower is better) Translates to: LSLAVRIKVPRCSPDSAFQVNPI*WRFAPA Trigger: AGCAGGGGCAAATCTCCACCAAATTGGATTCACCTG...AAAAGCAGAGTCAGGACTGCACCTGGGGACTTTGATTCTGACTGCCAGACTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR GCA 90 bp | CAATTCCAAGTGATAGGAAGTGATGAGCAGTGTTTGGCTGTGGCCAGAGCACACATCTTTTCCCCAGAATaGCTTAGTCTGGCAGTCAGA | + |
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Preference number: 2 (lower is better) Translates to: QFQVIGSDEQCLAVARAHIFSPE*LSLAVR Trigger: TCTGACTGCCAGACTAAGGCATTCTGGGGAAAAGAT...GTGTGCTCTGGCCACAGCCAAACACTGCTCATCACTTCCTATCACTTGGAATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR CCA 90 bp | GTAATCATACAATTCCAAGTGATAGGAAGTGATGAGCAGTGTTTGGCTGTGGCCCTGGTTGGTTTTCTCTaGGCTGCTGCCATCTTTTCC | + |
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Preference number: 2 (lower is better) Translates to: VIIQFQVIGSDEQCLAVALVGFL*AAAIFS Trigger: GGAAAAGATGGCAGCAGCCCAGAGAAAACCAACCAG...GGCCACAGCCAAACACTGCTCATCACTTCCTATCACTTGGAATTGTATGATTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR TCA 90 bp | GTAATCATACAATTCCAAGTGATAGGAAGTGATGAGCAGTGTTTGGCTGTGGCCATGTGCTCAGTCCCCTaGTTTATATTTCAGGTGACG | + |
|
Preference number: 2 (lower is better) Translates to: VIIQFQVIGSDEQCLAVAMCSVP*FIFQVT Trigger: CGTCACCTGAAATATAAATCAGGGGACTGAGCACAT...GGCCACAGCCAAACACTGCTCATCACTTCCTATCACTTGGAATTGTATGATTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR CCA 90 bp | GTAATCATACAATTCCAAGTGATAGGAAGTGATGAGCAGTGTTTGGCTGTGGCCGAATTCTATCCCAGGTaGTTCCTGTTAGACCTTCTG | + |
|
Preference number: 2 (lower is better) Translates to: VIIQFQVIGSDEQCLAVAEFYPR*FLLDLL Trigger: CAGAAGGTCTAACAGGAACCACCTGGGATAGAATTC...GGCCACAGCCAAACACTGCTCATCACTTCCTATCACTTGGAATTGTATGATTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR TCA 90 bp | TTCTCCATGCATCTCTCTATACAATCCAAAATGAAATCATCAAGGTTAGAGAGTAGGCAGGTGAATTTCTaGGTTCGAGGCCAGCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: FSMHLSIQSKMKSSRLESRQVNF*VRGQPG Trigger: ACCAGGCTGGCCTCGAACTCAGAAATTCACCTGCCT...ACTCTCTAACCTTGATGATTTCATTTTGGATTGTATAGAGAGATGCATGGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022856.15 ENSMUST00000170100.2 |
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| 3UTR-3UTR TCA 90 bp | CTATTTACAGATTTACAGAATGGGACTGACCTTGCTCCTATTTTCTCCATGCATTGGGTCTTATCACAGTaGAAGGCTTCCACCAAGTCG | + |
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Preference number: 2 (lower is better) Translates to: LFTDLQNGTDLAPIFSMHWVLSQ*KASTKS Trigger: CGACTTGGTGGAAGCCTTTCACTGTGATAAGACCCA...ATGCATGGAGAAAATAGGAGCAAGGTCAGTCCCATTCTGTAAATCTGTAAATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170100.2 |
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| 3UTR-3UTR GCA 90 bp | TGTACCAGGATACAGGTGAATCCAATTTGGTGGAGATTTGCCCCTGCTGCACTGATGAGCATATTGAAGTaGATATACCCTGACATGATT | + |
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Preference number: 2 (lower is better) Translates to: CTRIQVNPIWWRFAPAALMSILK*IYPDMI Trigger: AATCATGTCAGGGTATATGCACTTCAATATGCTCAT...CAGTGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGTATCCTGGTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CAA 90 bp | CCAGTAATCATACAATTCCAAGTGATAGGAAGTGATGAGCAGTGTTaGGCTGTGGCCAGAGCACACATATACCATTTCATATCAAGGCTA | + |
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Preference number: 2 (lower is better) Translates to: PVIIQFQVIGSDEQC*AVARAHIYHFISRL Trigger: TAGCCTTGATATGAAATGGTATATGTGTGCTCTGGCCACAGCCAAACACTGCTCATCACTTCCTATCACTTGGAATTGTATGATTACTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR TCA 90 bp | GTTGTGGTATCAATGAGCATATTGAAGTGCATATACCCTGACATGATTAAAAGCCCACAAACTTTGTGCTaGTTCTGGTCACCTCCCATC | + |
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Preference number: 2 (lower is better) Translates to: VVVSMSILKCIYPDMIKSPQTLC*FWSPPI Trigger: GATGGGAGGTGACCAGAATCAGCACAAAGTTTGTGG...GCTTTTAATCATGTCAGGGTATATGCACTTCAATATGCTCATTGATACCACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR TCA 90 bp | CAAACTTCTATATCATCCCTAGAGGGACAGGCCACAACCCTAATAGATAGGACTACTACACTACCACTTTaGATAAAAGCTAGTCACTCC | + |
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Preference number: 2 (lower is better) Translates to: QTSISSLEGQATTLIDRTTTLPL*IKASHS Trigger: GGAGTGACTAGCTTTTATTCAAAGTGGTAGTGTAGT...AGTCCTATCTATTAGGGTTGTGGCCTGTCCCTCTAGGGATGATATAGAAGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR CCA 90 bp | GTTGTGGTATCAATGAGCATATTGAAGTGCATATACCCTGACATGATTAAAAGCGACTTTTCAAGGGTTTaGGCTATCCCTCTGCCCCTT | + |
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Preference number: 2 (lower is better) Translates to: VVVSMSILKCIYPDMIKSDFSRV*AIPLPL Trigger: AAGGGGCAGAGGGATAGCCCAAACCCTTGAAAAGTC...GCTTTTAATCATGTCAGGGTATATGCACTTCAATATGCTCATTGATACCACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CAA 90 bp | CCCAACTTCCTTATTGTCTTCTGTATAAAAAGTCTGATACTCGAGTaGACATTACATTCAGATACTACACAACCTCTCCTGTGTGCATCT | + |
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Preference number: 2 (lower is better) Translates to: PNFLIVFCIKSLILE*TLHSDTTQPLLCAS Trigger: AGATGCACACAGGAGAGGTTGTGTAGTATCTGAATGTAATGTCAACTCGAGTATCAGACTTTTTATACAGAAGACAATAAGGAAGTTGGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CAA 90 bp | ATAGTTAAAGCCTTCCGCCAGTGTTCCAACAGTCCTAGAACATCCTaGAGAAAGATCATGGGCTTGAAATTCAGTAAAAATGTTGCTATT | + |
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Preference number: 2 (lower is better) Translates to: IVKAFRQCSNSPRTS*RKIMGLKFSKNVAI Trigger: AATAGCAACATTTTTACTGAATTTCAAGCCCATGATCTTTCTCAAGGATGTTCTAGGACTGTTGGAACACTGGCGGAAGGCTTTAACTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CAA 90 bp | TCCACGTGCTCTCTTTTAGTATTATCCTATAAGTGCCTTTTAAGATaGAATTCTGACATAGTTAAAGCCTTCCGCCAGTGTTCCAACAGT | + |
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Preference number: 2 (lower is better) Translates to: STCSLLVLSYKCLLR*NSDIVKAFRQCSNS Trigger: ACTGTTGGAACACTGGCGGAAGGCTTTAACTATGTCAGAATTCAATCTTAAAAGGCACTTATAGGATAATACTAAAAGAGAGCACGTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CAA 90 bp | CTGTGTTTGCATTCCTCTGTTTTATGTAAGAATCCAGAAACCTCTTaGTACCCAAACTTCTTTGTATGTCACCCAACTTCCTTATTGTCT | + |
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Preference number: 2 (lower is better) Translates to: LCLHSSVLCKNPETS*YPNFFVCHPTSLLS Trigger: AGACAATAAGGAAGTTGGGTGACATACAAAGAAGTTTGGGTACAAAGAGGTTTCTGGATTCTTACATAAAACAGAGGAATGCAAACACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR GCA 90 bp | AAGCAAAACCTTTCAGACAGTAACAGTAGGAAGGAAGACTATTTAGGAACCAAAGTGCATTTAAAAACCTaGAGTAAACTGAATGCCGGT | + |
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Preference number: 2 (lower is better) Translates to: KQNLSDSNSRKEDYLGTKVHLKT*SKLNAG Trigger: ACCGGCATTCAGTTTACTGCAGGTTTTTAAATGCAC...TTTGGTTCCTAAATAGTCTTCCTTCCTACTGTTACTGTCTGAAAGGTTTTGCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR TCA 90 bp | GTACCCAAACTTCTTTGTATGTCACCCAACTTCCTTATTGTCTTCTGTATAAAAGCATATACCCTGACATaGTTAAAAGCAACACTGGAA | + |
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Preference number: 2 (lower is better) Translates to: VPKLLCMSPNFLIVFCIKAYTLT*LKATLE Trigger: TTCCAGTGTTGCTTTTAATCATGTCAGGGTATATGC...TTTTATACAGAAGACAATAAGGAAGTTGGGTGACATACAAAGAAGTTTGGGTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CCA 72 bp | CCTCGTGACTGGCGAGGGGGCGTGGCCTGCGGTGCGTaGATGAGAGAGAGTATAAAAGGAGTGAGAGGCCCA | + |
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Preference number: 3 (lower is better) Translates to: PRDWRGGVACGA*MRESIKGVRGP Trigger: TGGGCCTCTCACTCCTTTTATACTCTCTCTCATCCACGCACCGCAGGCCACGCCCCCTCGCCAGTCACGAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR TCA 72 bp | ATTTGGTGGAGATTTGCCCCTGCTGCACTGATTAGCTaGAGCCTCGTGACTGGCGAGGGGGCGTGGCCTGCG | + |
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Preference number: 3 (lower is better) Translates to: IWWRFAPAALIS*SLVTGEGAWPA Trigger: CGCAGGCCACGCCCCCTCGCCAGTCACGAGGCTTCAGCTAATCAGTGCAGCAGGGGCAAATCTCCACCAAAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR TCA 72 bp | ATCCCAGCACTCGGGAGGCAGAGGCAGGTGAATTTCTaGGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: IPALGRQRQVNF*VRGQPGLQSEF Trigger: GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCTGCCTCTGCCTCCCGAGTGCTGGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022856.15 ENSMUST00000170100.2 |
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| 3UTR TCA 72 bp | CATCTTGAGTGCTGCGCAGGTGTACCAGGATACAGGTaGATCCAATTTGGTGGAGATTTGCCCCTGCTGCAC | + |
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Preference number: 3 (lower is better) Translates to: HLECCAGVPGYR*IQFGGDLPLLH Trigger: GTGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGTATCCTGGTACACCTGCGCAGCACTCAAGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR GCA 72 bp | CCTGTGTGCATCTGTCTGTCAATTTATTCGACGCTTTaGCCACCTGAGACTAGAGACCCGTTCCACGCAGAC | + |
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Preference number: 3 (lower is better) Translates to: PVCICLSIYSTL*PPETRDPFHAD Trigger: GTCTGCGTGGAACGGGTCTCTAGTCTCAGGTGGGCAAAGCGTCGAATAAATTGACAGACAGATGCACACAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR CAA 90 bp | AAAGCAACACTGGAAGGTGAGGATCAGGCTCAGTGGCTCAGCAGTTGCTCAACATCCCTCTGCCCCTTTTaGAGGCAGTTCTTTCGTTTG | + |
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Preference number: 3 (lower is better) Translates to: KATLEGEDQAQWLSSCSTSLCPF*RQFFRL Trigger: CAAACGAAAGAACTGCCTCAAAAAGGGGCAGAGGGA...TGTTGAGCAACTGCTGAGCCACTGAGCCTGATCCTCACCTTCCAGTGTTGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR GCA 72 bp | GGCCTGCAGACTTTTCAAGGGTTTGGGCTATCCCTCTaGCCCTTTTTGAGGCAGTTCTTTCGTTTGTTGTGC | + |
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Preference number: 3 (lower is better) Translates to: GLQTFQGFGLSL*PFLRQFFRLLC Trigger: GCACAACAAACGAAAGAACTGCCTCAAAAAGGGGCAGAGGGATAGCCCAAACCCTTGAAAAGTCTGCAGGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR CCA 72 bp | TTAAAAGCAACACTGGAAGGTGAGGATCAGGCTCAGTaGCTCAGCAGTTGCTCAACATGTGCTCAGTCCCCT | + |
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Preference number: 3 (lower is better) Translates to: LKATLEGEDQAQ*LSSCSTCAQSP Trigger: AGGGGACTGAGCACATGTTGAGCAACTGCTGAGCCACTGAGCCTGATCCTCACCTTCCAGTGTTGCTTTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR TCA 72 bp | CCTGGAGATGGAACTTCTGCTCTCATCCAGAAGTTCTaGTTGCCTCAAGTAGCATCGGAAGAGTTGTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: PGDGTSALIQKF*LPQVASEELSP Trigger: TGGAGACAACTCTTCCGATGCTACTTGAGGCAATCAGAACTTCTGGATGAGAGCAGAAGTTCCATCTCCAGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR GCA 72 bp | AGATTTGCACATTCAAGTACTCCTAGCGTTCCTAACTaGAGCACTGTCTATTTGCCACGCTCTCCGGTTGAG | + |
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Preference number: 3 (lower is better) Translates to: RFAHSSTPSVPN*STVYLPRSPVE Trigger: CTCAACCGGAGAGCGTGGCAAATAGACAGTGCTGCAGTTAGGAACGCTAGGAGTACTTGAATGTGCAAATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR-3UTR CAA 90 bp | TGTACCAGGATACAGGTGAATCCAATTTGGTGGAGATTTGCCCCTGCTGCACTGAGTCCTAGAACATCCTaGAGAAAGATCATGGGCTTG | + |
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Preference number: 3 (lower is better) Translates to: CTRIQVNPIWWRFAPAALSPRTS*RKIMGL Trigger: CAAGCCCATGATCTTTCTCAAGGATGTTCTAGGACT...CAGTGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGTATCCTGGTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR TCA 72 bp | TCAACATGTGCTCAGTCCCCTGATTTATATTTCAGGTaGCGAGGAACAGGAAATGTGAAGGTAGGAAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: STCAQSPDLYFR*RGTGNVKVGRG Trigger: GCCCCTTCCTACCTTCACATTTCCTGTTCCTCGTCACCTGAAATATAAATCAGGGGACTGAGCACATGTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR TCA 72 bp | GTGGCTCAGCAGTTGCTCAACATGTGCTCAGTCCCCTaGTTTATATTTCAGGTGACGAGGAACAGGAAATGT | + |
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Preference number: 3 (lower is better) Translates to: VAQQLLNMCSVP*FIFQVTRNRKC Trigger: ACATTTCCTGTTCCTCGTCACCTGAAATATAAATCAGGGGACTGAGCACATGTTGAGCAACTGCTGAGCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR TCA 72 bp | ATATACCCTGACATGATTAAAAGCAACACTGGAAGGTaGGGATCAGGCTCAGTGGCTCAGCAGTTGCTCAAC | + |
|
Preference number: 3 (lower is better) Translates to: IYPDMIKSNTGR*GSGSVAQQLLN Trigger: GTTGAGCAACTGCTGAGCCACTGAGCCTGATCCTCACCTTCCAGTGTTGCTTTTAATCATGTCAGGGTATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR GCA 72 bp | CTCTGCCCCTTTTTGAGGCAGTTCTTTCGTTTGTTGTaGTGTGTACTCCAGACTAGCAGGACCACAAACTTT | + |
|
Preference number: 3 (lower is better) Translates to: LCPFLRQFFRLL*CVLQTSRTTNF Trigger: AAAGTTTGTGGTCCTGCTAGTCTGGAGTACACAGCACAACAAACGAAAGAACTGCCTCAAAAAGGGGCAGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR-3UTR CAA 90 bp | CAAACTTCTATATCATCCCTAGAGGGACAGGCCACAACCCTAATAGATAGGACTAAGGGCATGAAGCCCTaGAGCCTGACTTCTAAGATT | + |
|
Preference number: 3 (lower is better) Translates to: QTSISSLEGQATTLIDRTKGMKP*SLTSKI Trigger: AATCTTAGAAGTCAGGCTCAAGGGCTTCATGCCCTT...AGTCCTATCTATTAGGGTTGTGGCCTGTCCCTCTAGGGATGATATAGAAGTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR TCA 72 bp | TTGGGAGCCAGCAAGTGGATTCCACAATCAAACTCTTaGTGTTTTCTACATCCAAGTGCTAACCAGGGCCAA | + |
|
Preference number: 3 (lower is better) Translates to: LGASKWIPQSNS*CFLHPSANQGQ Trigger: TTGGCCCTGGTTAGCACTTGGATGTAGAAAACATCAAGAGTTTGATTGTGGAATCCACTTGCTGGCTCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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| 3UTR GCA 72 bp | TGTTTTCTACATCCAAGTGCTAACCAGGGCCAACTCTaGCTACCTTCCAAGACCAGACTAAACTCTATATGT | + |
|
Preference number: 3 (lower is better) Translates to: CFLHPSANQGQL*LPSKTRLNSIC Trigger: ACATATAGAGTTTAGTCTGGTCTTGGAAGGTAGGCAGAGTTGGCCCTGGTTAGCACTTGGATGTAGAAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR CCA 72 bp | TATCACAGTGAAAGGCTTCCACCAAGTCGGAATCTTTaGGATAGTCAAGATGGGAGTTTCCTGCATTTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: YHSERLPPSRNL*DSQDGSFLHFQ Trigger: TTGGAAATGCAGGAAACTCCCATCTTGACTATCCCAAAGATTCCGACTTGGTGGAAGCCTTTCACTGTGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168408.2 |
||
| 3UTR-3UTR CAA 90 bp | AAGCAAAACCTTTCAGACAGTAACAGTAGGAAGGAAGACTATTTAGGAACCAAAAGACTTTTCAAGGGTTaGGGCTATCCCTCTGCCCCT | + |
|
Preference number: 3 (lower is better) Translates to: KQNLSDSNSRKEDYLGTKRLFKG*GYPSAP Trigger: AGGGGCAGAGGGATAGCCCAAACCCTTGAAAAGTCT...TTTGGTTCCTAAATAGTCTTCCTTCCTACTGTTACTGTCTGAAAGGTTTTGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR TCA 72 bp | CTGCAACCTGTCCATCAGCTCGTTGTACTTAAGATGTaGGTCATCAATTCACTCCTTCGTATCAAAGTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: LQPVHQLVVLKM*VINSLLRIKVP Trigger: TGGAACTTTGATACGAAGGAGTGAATTGATGACTCACATCTTAAGTACAACGAGCTGATGGACAGGTTGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR GCA 72 bp | GACATTACATTCAGATACTACACAACCTCTCCTGTGTaGATCTGTCTGTCAATTTATTCGACGCTTTGCCCA | + |
|
Preference number: 3 (lower is better) Translates to: DITFRYYTTSPV*ICLSIYSTLCP Trigger: TGGGCAAAGCGTCGAATAAATTGACAGACAGATGCACACAGGAGAGGTTGTGTAGTATCTGAATGTAATGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR-3UTR CAA 90 bp | AAACTATTTACAGATTTACAGAATGGGACTGACCTTGCTCCTATTTTCTCCATGTTCAGTAGCGACAGCTaGTATCTGTTGACCTGGGTC | + |
|
Preference number: 3 (lower is better) Translates to: KLFTDLQNGTDLAPIFSMFSSDS*YLLTWV Trigger: GACCCAGGTCAACAGATACAAGCTGTCGCTACTGAA...CATGGAGAAAATAGGAGCAAGGTCAGTCCCATTCTGTAAATCTGTAAATAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170100.2 |
||
| 3UTR GCA 72 bp | ACTCTATATGTTTGGGGTAGTATGGCTGTAGACATATaGATACAGTTGCTAATGGGCCTGAACTACACTACT | + |
|
Preference number: 3 (lower is better) Translates to: TLYVWGSMAVDI*IQLLMGLNYTT Trigger: AGTAGTGTAGTTCAGGCCCATTAGCAACTGTATGCATATGTCTACAGCCATACTACCCCAAACATATAGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR CCA 72 bp | CTCATGAGGCAAAAGAGTTTCATAGAAACTCGCTCCTaGAGTCTGGTGTTCTCTCTAACCCATACATTAATT | + |
|
Preference number: 3 (lower is better) Translates to: LMRQKSFIETRS*SLVFSLTHTLI Trigger: AATTAATGTATGGGTTAGAGAGAACACCAGACTCCAGGAGCGAGTTTCTATGAAACTCTTTTGCCTCATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR-3UTR CAA 90 bp | AAGCAAAACCTTTCAGACAGTAACAGTAGGAAGGAAGACTATTTAGGAACCAAAAGTCTGATACTCGAGTaGACATTACATTCAGATACT | + |
|
Preference number: 3 (lower is better) Translates to: KQNLSDSNSRKEDYLGTKSLILE*TLHSDT Trigger: AGTATCTGAATGTAATGTCAACTCGAGTATCAGACT...TTTGGTTCCTAAATAGTCTTCCTTCCTACTGTTACTGTCTGAAAGGTTTTGCTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| CDS-3UTR TCA 90 bp | GCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGGGTCTCCTCAGGCTCCTaGGTGGTAATTTTGCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: AFNPSTREAEAGEFLSSRVSSGS*VVILQT Trigger: GGTCTGCAAAATTACCACTCAGGAGCCTGAGGAGAC...CCTCGAACTCAGAAATTCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022856.15 ENSMUST00000170100.2 |
||
| CDS-3UTR TCA 90 bp | GCTATCCCTCTGCCCCTTTTTGAGGCAGTTCTTTCGTTTGTTGTGCTGTGTACTGTCTCCTCAGGCTCCTaGGTGGTAATTTTGCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: AIPLPLFEAVLSFVVLCTVSSGS*VVILQT Trigger: GGTCTGCAAAATTACCACTCAGGAGCCTGAGGAGAC...AGTACACAGCACAACAAACGAAAGAACTGCCTCAAAAAGGGGCAGAGGGATAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| CDS-3UTR TCA 90 bp | CAATTCCAAGTGATAGGAAGTGATGAGCAGTGTTTGGCTGTGGCCAGAGCACACTGGGTCTTATCACAGTaGAAGGCTTCCACCAAGTCG | + |
|
Preference number: 4 (lower is better) Translates to: QFQVIGSDEQCLAVARAHWVLSQ*KASTKS Trigger: CGACTTGGTGGAAGCCTTTCACTGTGATAAGACCCA...GTGTGCTCTGGCCACAGCCAAACACTGCTCATCACTTCCTATCACTTGGAATTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| CDS-3UTR CCA 90 bp | TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGGCCACCAAGTCGGAATCTTTaGGATAGTCAAGATGGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: FNPSTREAEAGEFLSSRPPSRNL*DSQDGS Trigger: ACTCCCATCTTGACTATCCCAAAGATTCCGACTTGG...TGGCCTCGAACTCAGAAATTCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022856.15 |
||
| 3UTR CAA 72 bp | TCCCTCTGCCCCTTTTTGAGGCAGTTCTTTCGTTTGTaGTGCTGTGTACTCCAGACTAGCAGGACCACAAAC | + |
|
Preference number: 4 (lower is better) Translates to: SLCPFLRQFFRL*CCVLQTSRTTN Trigger: GTTTGTGGTCCTGCTAGTCTGGAGTACACAGCACAACAAACGAAAGAACTGCCTCAAAAAGGGGCAGAGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR CAA 72 bp | CTATCCCTCTGCCCCTTTTTGAGGCAGTTCTTTCGTTaGTTGTGCTGTGTACTCCAGACTAGCAGGACCACA | + |
|
Preference number: 4 (lower is better) Translates to: LSLCPFLRQFFR*LCCVLQTSRTT Trigger: TGTGGTCCTGCTAGTCTGGAGTACACAGCACAACAAACGAAAGAACTGCCTCAAAAAGGGGCAGAGGGATAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| CDS-3UTR GCA 90 bp | CTTAGTCTGGCAGTCAGAATCAAAGTCCCCAGGTGCAGTCCTGACTCTGCTTTTACCCCTTCAGGTAGCTaGAACCATGTTTTACAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LSLAVRIKVPRCSPDSAFTPSGS*NHVLQE Trigger: TTCCTGTAAAACATGGTTGCAGCTACCTGAAGGGGT...AAAAGCAGAGTCAGGACTGCACCTGGGGACTTTGATTCTGACTGCCAGACTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| CDS-3UTR CCA 90 bp | GCTATCCCTCTGCCCCTTTTTGAGGCAGTTCTTTCGTTTGTTGTGCTGTGTACTCCAAGTCGGAATCTTTaGGATAGTCAAGATGGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: AIPLPLFEAVLSFVVLCTPSRNL*DSQDGS Trigger: ACTCCCATCTTGACTATCCCAAAGATTCCGACTTGG...AGTACACAGCACAACAAACGAAAGAACTGCCTCAAAAAGGGGCAGAGGGATAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| CDS-3UTR TCA 90 bp | GTACCCAAACTTCTTTGTATGTCACCCAACTTCCTTATTGTCTTCTGTATAAAAACCACGTTTACCCACTaGGCCACCTCCTGCTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: VPKLLCMSPNFLIVFCIKTTFTH*ATSCSP Trigger: TGGAGAGCAGGAGGTGGCTCAGTGGGTAAACGTGGT...TTTTATACAGAAGACAATAAGGAAGTTGGGTGACATACAAAGAAGTTTGGGTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR CAA 72 bp | GCCTTCCGCCAGTGTTCCAACAGTCCTAGAACATCCTaGAGAAAGATCATGGGCTTGAAATTCAGTAAAAAT | + |
|
Preference number: 4 (lower is better) Translates to: AFRQCSNSPRTS*RKIMGLKFSKN Trigger: ATTTTTACTGAATTTCAAGCCCATGATCTTTCTCAAGGATGTTCTAGGACTGTTGGAACACTGGCGGAAGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| CDS-3UTR TCA 90 bp | AAAAACTATTTACAGATTTACAGAATGGGACTGACCTTGCTCCTATTTTCTCCAGTCTCCTCAGGCTCCTaGGTGGTAATTTTGCAGACC | + |
|
Preference number: 4 (lower is better) Translates to: KNYLQIYRMGLTLLLFSPVSSGS*VVILQT Trigger: GGTCTGCAAAATTACCACTCAGGAGCCTGAGGAGAC...TGGAGAAAATAGGAGCAAGGTCAGTCCCATTCTGTAAATCTGTAAATAGTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000022856.15 ENSMUST00000170100.2 |
||
| CDS-3UTR TCA 90 bp | AAACTATTTACAGATTTACAGAATGGGACTGACCTTGCTCCTATTTTCTCCATGTGGGTCTTATCACAGTaGAAGGCTTCCACCAAGTCG | + |
|
Preference number: 4 (lower is better) Translates to: KLFTDLQNGTDLAPIFSMWVLSQ*KASTKS Trigger: CGACTTGGTGGAAGCCTTTCACTGTGATAAGACCCA...CATGGAGAAAATAGGAGCAAGGTCAGTCCCATTCTGTAAATCTGTAAATAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022856.15 |
||
| CDS-3UTR TCA 90 bp | CATGCATCTCTCTATACAATCCAAAATGAAATCATCAAGGTTAGAGAGTTAGAGAAGATGGGAGTTTCCTaGAATAGGGCTTGTCAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: HASLYTIQNEIIKVRELEKMGVS*NRACQE Trigger: CTCCTGACAAGCCCTATTTCAGGAAACTCCCATCTT...CTCTAACTCTCTAACCTTGATGATTTCATTTTGGATTGTATAGAGAGATGCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170100.2 |
||
| 3UTR CAA 72 bp | CATTCCTCTGTTTTATGTAAGAATCCAGAAACCTCTTaGTACCCAAACTTCTTTGTATGTCACCCAACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: HSSVLCKNPETS*YPNFFVCHPTS Trigger: GGAAGTTGGGTGACATACAAAGAAGTTTGGGTACAAAGAGGTTTCTGGATTCTTACATAAAACAGAGGAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR CAA 72 bp | GTAAGAATCCAGAAACCTCTTTGTACCCAAACTTCTTaGTATGTCACCCAACTTCCTTATTGTCTTCTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: VRIQKPLCTQTS*YVTQLPYCLLY Trigger: ATACAGAAGACAATAAGGAAGTTGGGTGACATACAAAGAAGTTTGGGTACAAAGAGGTTTCTGGATTCTTAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR CAA 72 bp | CTTATTGTCTTCTGTATAAAAAGTCTGATACTCGAGTaGACATTACATTCAGATACTACACAACCTCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: LIVFCIKSLILE*TLHSDTTQPLL Trigger: CAGGAGAGGTTGTGTAGTATCTGAATGTAATGTCAACTCGAGTATCAGACTTTTTATACAGAAGACAATAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| 3UTR CAA 72 bp | AAAAACTATTTACAGATTTACAGAATGGGACTGACCTaGCTCCTATTTTCTCCATGCATCTCTCTATACAAT | + |
|
Preference number: 4 (lower is better) Translates to: KNYLQIYRMGLT*LLFSPCISLYN Trigger: ATTGTATAGAGAGATGCATGGAGAAAATAGGAGCAAGGTCAGTCCCATTCTGTAAATCTGTAAATAGTTTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022856.15 ENSMUST00000170100.2 |
||
| CDS-3UTR CAA 90 bp | AGGACATCACCTGTCATGTCCAGCTCAGAAAAGGCTTCCCGGAGCCCCTCTGACTCGTACTCCTCTTCATaGTACTGGGTTAGGAGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: RTSPVMSSSEKASRSPSDSYSSS*YWVRRG Trigger: GCCTCTCCTAACCCAGTACAATGAAGAGGAGTACGA...GTCAGAGGGGCTCCGGGAAGCCTTTTCTGAGCTGGACATGACAGGTGATGTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168408.2 |
||
| CDS-3UTR CAA 90 bp | TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGGCCATCGTACTCCTCTTCATaGTACTGGGTTAGGAGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: FNPSTREAEAGEFLSSRPSYSSS*YWVRRG Trigger: GCCTCTCCTAACCCAGTACAATGAAGAGGAGTACGA...TGGCCTCGAACTCAGAAATTCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022856.15 |
||
| CDS-3UTR CAA 90 bp | CTTAGTCTGGCAGTCAGAATCAAAGTCCCCAGGTGCAGTCCTGACTCTGCTTTTTCGTACTCCTCTTCATaGTACTGGGTTAGGAGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: LSLAVRIKVPRCSPDSAFSYSSS*YWVRRG Trigger: GCCTCTCCTAACCCAGTACAATGAAGAGGAGTACGA...AAAAGCAGAGTCAGGACTGCACCTGGGGACTTTGATTCTGACTGCCAGACTAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| CDS-3UTR CAA 90 bp | GTTGTGGTATCAATGAGCATATTGAAGTGCATATACCCTGACATGATTAAAAGCTGGGTGACCATAACCTaGGTAACACATCCGAAGCGC | + |
|
Preference number: 5 (lower is better) Translates to: VVVSMSILKCIYPDMIKSWVTIT*VTHPKR Trigger: GCGCTTCGGATGTGTTACCAAGGTTATGGTCACCCA...GCTTTTAATCATGTCAGGGTATATGCACTTCAATATGCTCATTGATACCACAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
||
| CDS-3UTR CAA 90 bp | AAAAACTATTTACAGATTTACAGAATGGGACTGACCTTGCTCCTATTTTCTCCATGGGTGACCATAACCTaGGTAACACATCCGAAGCGC | + |
|
Preference number: 5 (lower is better) Translates to: KNYLQIYRMGLTLLLFSPWVTIT*VTHPKR Trigger: GCGCTTCGGATGTGTTACCAAGGTTATGGTCACCCA...TGGAGAAAATAGGAGCAAGGTCAGTCCCATTCTGTAAATCTGTAAATAGTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022856.15 ENSMUST00000170100.2 |
||
| CDS-3UTR CAA 90 bp | GCTCCTATTTTCTCCATGCATCTCTCTATACAATCCAAAATGAAATCATCAAGGTTCAGTAGCGACAGCTaGTATCTGTTGACCTGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: APIFSMHLSIQSKMKSSRFSSDS*YLLTWV Trigger: GACCCAGGTCAACAGATACAAGCTGTCGCTACTGAA...CCTTGATGATTTCATTTTGGATTGTATAGAGAGATGCATGGAGAAAATAGGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022856.15 |
||
| CDS TCA 72 bp | ATGTTTTACAGGAATACTTTACATCCGAAATTCTGTTaGCCTGGGTCTTATCACAGTGAAAGGCTTCCACCA | + |
|
Preference number: 6 (lower is better) Translates to: MFYRNTLHPKFC*PGSYHSERLPP Trigger: TGGTGGAAGCCTTTCACTGTGATAAGACCCAGGTCAACAGAATTTCGGATGTAAAGTATTCCTGTAAAACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100775.10 |
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