Pregenerated sensors for RACK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020372Ensembl transcript IDs: ENSMUST00000020640.8
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCTCAGGCTCCCTGTTTTCTGACCCAGGACAGGCCTGGTCTGAATTTGTGGGCTGATAGTAAACACCAGTaGTCTGCTCTTGCAGTAGAA | + |
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Preference number: 2 (lower is better) Translates to: PQAPCFLTQDRPGLNLWADSKHQ*SALAVE Trigger: TTCTACTGCAAGAGCAGACCACTGGTGTTTACTATC...AGCCCACAAATTCAGACCAGGCCTGTCCTGGGTCAGAAAACAGGGAGCCTGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| 3UTR-3UTR GCA 90 bp | AAAGCAGAGATTGTTTTTCAGACCTCAGGCTCCCTGTTTTCTGACCCAGGACAGCTGTTACTGCTTACATaGCAGGATAGTAAACACCAG | + |
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Preference number: 2 (lower is better) Translates to: KAEIVFQTSGSLFSDPGQLLLLT*QDSKHQ Trigger: CTGGTGTTTACTATCCTGGCATGTAAGCAGTAACAG...CTGTCCTGGGTCAGAAAACAGGGAGCCTGAGGTCTGAAAAACAATCTCTGCTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR TCA 90 bp | TTCAGACCTCAGGCTCCCTGTTTTCTGACCCAGGACAGGCCTGGTCTGAATTTGTGGTGGTGCCCGTTGTaGGATCCCAGAGGCGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: FRPQAPCFLTQDRPGLNLWWCPL*DPRGAA Trigger: CGCTGCGCCTCTGGGATCTCACAACGGGCACCACCA...CAAATTCAGACCAGGCCTGTCCTGGGTCAGAAAACAGGGAGCCTGAGGTCTGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CCA 90 bp | CCAGTGGTCTGCTCTTGCAGTAGAACCAGGGACTCAGCTTCCAGGACTCACATACCGGGAACTGCGGTGTaGTGGCGATCTGTGTTACCC | + |
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Preference number: 4 (lower is better) Translates to: PVVCSCSRTRDSASRTHIPGTAV*WRSVLP Trigger: GGGTAACACAGATCGCCACCACACCGCAGTTCCCGG...TATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTACTGCAAGAGCAGACCACTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR TCA 90 bp | CCAGTGGTCTGCTCTTGCAGTAGAACCAGGGACTCAGCTTCCAGGACTCACATACTAACGAAGTGGGAGTaGCCTCTCAGAGCACGCTGT | + |
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Preference number: 4 (lower is better) Translates to: PVVCSCSRTRDSASRTHILTKWE*PLRARC Trigger: ACAGCGTGCTCTGAGAGGTCACTCCCACTTCGTTAG...TATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTACTGCAAGAGCAGACCACTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR GCA 90 bp | GCAGAGATTGTTTTTCAGACCTCAGGCTCCCTGTTTTCTGACCCAGGACAGGCCGCCATCAGCAGACCATaGCAAAGAGGTACACTGGGG | + |
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Preference number: 4 (lower is better) Translates to: AEIVFQTSGSLFSDPGQAAISRP*QRGTLG Trigger: CCCCAGTGTACCTCTTTGGCATGGTCTGCTGATGGC...GGCCTGTCCTGGGTCAGAAAACAGGGAGCCTGAGGTCTGAAAAACAATCTCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR GCA 90 bp | GAGATTGTTTTTCAGACCTCAGGCTCCCTGTTTTCTGACCCAGGACAGGCCTGGCCTGGACCGTGTACTTaGAGACACCCAGAGTATTCC | + |
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Preference number: 4 (lower is better) Translates to: EIVFQTSGSLFSDPGQAWPGPCT*RHPEYS Trigger: GGAATACTCTGGGTGTCTGCAAGTACACGGTCCAGG...CCAGGCCTGTCCTGGGTCAGAAAACAGGGAGCCTGAGGTCTGAAAAACAATCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR TCA 90 bp | CAGTGGTCTGCTCTTGCAGTAGAACCAGGGACTCAGCTTCCAGGACTCACATATCCCGAGAGGGCAAACTaGCCATCAGAGGAGATAACA | + |
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Preference number: 4 (lower is better) Translates to: QWSALAVEPGTQLPGLTYPERAN*PSEEIT Trigger: TGTTATCTCCTCTGATGGTCAGTTTGCCCTCTCGGG...ATATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTACTGCAAGAGCAGACCACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CCA 90 bp | GTAGAACCAGGGACTCAGCTTCCAGGACTCACATATAGAAGCCAGTTTCAGAAAGGAACTGCGGTGTGGTaGCGATCTGTGTTACCCATC | + |
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Preference number: 4 (lower is better) Translates to: VEPGTQLPGLTYRSQFQKGTAVW*RSVLPI Trigger: GATGGGTAACACAGATCGCCACCACACCGCAGTTCC...TTTCTGAAACTGGCTTCTATATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR TCA 90 bp | TGGTCTGCTCTTGCAGTAGAACCAGGGACTCAGCTTCCAGGACTCACATATAGAACAAGACACCCATTCTaGATGACTCTCATCCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: WSALAVEPGTQLPGLTYRTRHPF*MTLILD Trigger: GTCCAGGATGAGAGTCATTCAGAATGGGTGTCTTGT...TCTATATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTACTGCAAGAGCAGACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR TCA 90 bp | GCTCTTGCAGTAGAACCAGGGACTCAGCTTCCAGGACTCACATATAGAAGCCAGTCAATTCATCTACAATaGTCTTGCCCTCCAAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: ALAVEPGTQLPGLTYRSQSIHLQ*SCPPSP Trigger: GGGACTTGGAGGGCAAGATCATTGTAGATGAATTGA...CTGGCTTCTATATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTACTGCAAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR GCA 90 bp | CTTGCAGTAGAACCAGGGACTCAGCTTCCAGGACTCACATATAGAAGCCAGTTTGAGCACGCTGTGGTATaGCATAGTTGGTCTCATCTC | + |
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Preference number: 4 (lower is better) Translates to: LAVEPGTQLPGLTYRSQFEHAVV*HSWSHL Trigger: GAGATGAGACCAACTATGGCATACCACAGCGTGCTC...AAACTGGCTTCTATATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTACTGCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CCA 90 bp | CTTGCAGTAGAACCAGGGACTCAGCTTCCAGGACTCACATATAGAAGCCAGTTTAACACATCCTTGGTGTaGCCGACAAATCGCCTTGTG | + |
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Preference number: 4 (lower is better) Translates to: LAVEPGTQLPGLTYRSQFNTSLV*PTNRLV Trigger: CACAAGGCGATTTGTCGGCCACACCAAGGATGTGTT...AAACTGGCTTCTATATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTACTGCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CCA 90 bp | TTCAGACCTCAGGCTCCCTGTTTTCTGACCCAGGACAGGCCTGGTCTGAATTTGTATTCCATAACTTTATaGTCTTGTCTCGGGACCCAG | + |
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Preference number: 4 (lower is better) Translates to: FRPQAPCFLTQDRPGLNLYSITL*SCLGTQ Trigger: CTGGGTCCCGAGACAAGACCATAAAGTTATGGAATA...CAAATTCAGACCAGGCCTGTCCTGGGTCAGAAAACAGGGAGCCTGAGGTCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CCA 90 bp | CTCAGCTTCCAGGACTCACATATAGAAGCCAGTTTCAGAAAGCCAGTTTATTTCTCCCACAGCATAGCCTaGCCATCCTTGCCTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LSFQDSHIEASFRKPVYFSHSIA*PSLPPE Trigger: TTCTGGAGGCAAGGATGGCCAGGCTATGCTGTGGGA...GAAATAAACTGGCTTTCTGAAACTGGCTTCTATATGTGAGTCCTGGAAGCTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR GCA 90 bp | CATCTGATGTGTTTACTTAGCTGTTACTGCTTACATGCCAGGATAGTAAACACCATCATGTCCGGGAACTaGGGTGTGGTGGCGATCTGT | + |
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Preference number: 4 (lower is better) Translates to: HLMCLLSCYCLHARIVNTIMSGN*GVVAIC Trigger: ACAGATCGCCACCACACCGCAGTTCCCGGACATGAT...GGTGTTTACTATCCTGGCATGTAAGCAGTAACAGCTAAGTAAACACATCAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR GCA 90 bp | CTTGCAGTAGAACCAGGGACTCAGCTTCCAGGACTCACATATAGAAGCCAGTTTGTACCAATAGTTACCTaGCATACTCGCACCAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: LAVEPGTQLPGLTYRSQFVPIVT*HTRTKL Trigger: CAACTTGGTGCGAGTATGGCAGGTAACTATTGGTAC...AAACTGGCTTCTATATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTACTGCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR TCA 90 bp | CATCTGATGTGTTTACTTAGCTGTTACTGCTTACATGCCAGGATAGTAAACACCGACACCCATTCTGAATaGCTCTCATCCTGGACCGTG | + |
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Preference number: 4 (lower is better) Translates to: HLMCLLSCYCLHARIVNTDTHSE*LSSWTV Trigger: CACGGTCCAGGATGAGAGTCATTCAGAATGGGTGTC...GGTGTTTACTATCCTGGCATGTAAGCAGTAACAGCTAAGTAAACACATCAGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR GCA 90 bp | CCAGGACTCACATATAGAAGCCAGTTTCAGAAAGCCAGTTTATTTCTAAGACTTGTGCTGATAACTTCTTaGTTCAATTCATCTACAATG | + |
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Preference number: 4 (lower is better) Translates to: PGLTYRSQFQKASLFLRLVLITS*FNSSTM Trigger: CATTGTAGATGAATTGAAGCAAGAAGTTATCAGCAC...AAGTCTTAGAAATAAACTGGCTTTCTGAAACTGGCTTCTATATGTGAGTCCTGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CAA 90 bp | TTCAGACCTCAGGCTCCCTGTTTTCTGACCCAGGACAGGCCTGGTCTGAATTTGTGGGGTGGCTCTGCCTaGCTGCTGGTGCTGATAACT | + |
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Preference number: 5 (lower is better) Translates to: FRPQAPCFLTQDRPGLNLWGGSA*LLVLIT Trigger: AGTTATCAGCACCAGCAGCAAGGCAGAGCCACCCCA...CAAATTCAGACCAGGCCTGTCCTGGGTCAGAAAACAGGGAGCCTGAGGTCTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS GCA 90 bp | ATGATGGTCTTGTCTCGAGACGCAGACAGGATCATGTCCGGGAACTaGGGTGTGGTGGCGATCTGTGTTACCCATCCATTGTGGCCCTTA | + |
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Preference number: 5 (lower is better) Translates to: MMVLSRDADRIMSGN*GVVAICVTHPLWPL Trigger: TAAGGGCCACAATGGATGGGTAACACAGATCGCCACCACACCGCAGTTCCCGGACATGATCCTGTCTGCGTCTCGAGACAAGACCATCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CAA 90 bp | CCTCAGGCTCCCTGTTTTCTGACCCAGGACAGGCCTGGTCTGAATTTGTGGGCTTCATCTACAATGATCTaGCCCTCCAAGTCCCAGATC | + |
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Preference number: 5 (lower is better) Translates to: PQAPCFLTQDRPGLNLWASSTMI*PSKSQI Trigger: GATCTGGGACTTGGAGGGCAAGATCATTGTAGATGA...AGCCCACAAATTCAGACCAGGCCTGTCCTGGGTCAGAAAACAGGGAGCCTGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CAA 90 bp | CTCAGCTTCCAGGACTCACATATAGAAGCCAGTTTCAGAAAGCCAGTTTATTTCGAGACGATGATAGGGTaGCTGCTGTTCGGGGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: LSFQDSHIEASFRKPVYFETMIG*LLFGEK Trigger: CTTCTCCCCGAACAGCAGCAACCCTATCATCGTCTC...GAAATAAACTGGCTTTCTGAAACTGGCTTCTATATGTGAGTCCTGGAAGCTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CAA 90 bp | CTGATGTGTTTACTTAGCTGTTACTGCTTACATGCCAGGATAGTAAACACCAGTAGGTGCTTGCCTTCATaGAGATCCCACAGCATAGCC | + |
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Preference number: 5 (lower is better) Translates to: LMCLLSCYCLHARIVNTSRCLPS*RSHSIA Trigger: GGCTATGCTGTGGGATCTCAATGAAGGCAAGCACCT...ACTGGTGTTTACTATCCTGGCATGTAAGCAGTAACAGCTAAGTAAACACATCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS-3UTR CAA 90 bp | TGGTCTGCTCTTGCAGTAGAACCAGGGACTCAGCTTCCAGGACTCACATATAGAGGTGCTGATAACTTCTaGCTTCAATTCATCTACAAT | + |
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Preference number: 5 (lower is better) Translates to: WSALAVEPGTQLPGLTYRGADNF*LQFIYN Trigger: ATTGTAGATGAATTGAAGCAAGAAGTTATCAGCACC...TCTATATGTGAGTCCTGGAAGCTGAGTCCCTGGTTCTACTGCAAGAGCAGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS CCA 72 bp | GAGACGCAGACAGGATCATGTCCGGGAACTGCGGTGTaGTGGCGATCTGTGTTACCCATCCATTGTGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: ETQTGSCPGTAV*WRSVLPIHCGP Trigger: AGGGCCACAATGGATGGGTAACACAGATCGCCACCACACCGCAGTTCCCGGACATGATCCTGTCTGCGTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS GCA 72 bp | TTGTCTCGAGACGCAGACAGGATCATGTCCGGGAACTaGGGTGTGGTGGCGATCTGTGTTACCCATCCATTG | + |
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Preference number: 6 (lower is better) Translates to: LSRDADRIMSGN*GVVAICVTHPL Trigger: CAATGGATGGGTAACACAGATCGCCACCACACCGCAGTTCCCGGACATGATCCTGTCTGCGTCTCGAGACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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| CDS GCA 72 bp | CCCATTCTGAATGACTCTCATCCTGGACCGTGTACTTaGAGACACCCAGAGTATTCCATAACTTTATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: PILNDSHPGPCT*RHPEYSITLWS Trigger: AGACCATAAAGTTATGGAATACTCTGGGTGTCTGCAAGTACACGGTCCAGGATGAGAGTCATTCAGAATGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020640.8 |
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