Pregenerated sensors for RAC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018012Ensembl transcript IDs: ENSMUST00000018156.12, ENSMUST00000142229.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CACCCCTGCAACCCTGAGGGAGACCCGGCTCCCTCCTGGCCTCCCATAGGGACCTCCTCATGCTTCCCCTaGCCACCCACACCACTCCCC | + |
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Preference number: 2 (lower is better) Translates to: HPCNPEGDPAPSWPPIGTSSCFP*PPTPLP Trigger: GGGGAGTGGTGTGGGTGGGCAGGGGAAGCATGAGGA...GGTCCCTATGGGAGGCCAGGAGGGAGCCGGGTCTCCCTCAGGGTTGCAGGGGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| 3UTR-3UTR GCA 90 bp | CACCCCTGCAACCCTGAGGGAGACCCGGCTCCCTCCTGGCCTCCCATAGGGACCCCAGCCTTGTCCTCATaGTTCCCCTGCCCACCCACA | + |
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Preference number: 2 (lower is better) Translates to: HPCNPEGDPAPSWPPIGTPALSS*FPCPPT Trigger: TGTGGGTGGGCAGGGGAAGCATGAGGACAAGGCTGG...GGTCCCTATGGGAGGCCAGGAGGGAGCCGGGTCTCCCTCAGGGTTGCAGGGGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| 3UTR-3UTR GCA 90 bp | TGTTTATTGTATAAAATAAGAAGGGGCCGCCCTTTCCTGGGACATGATGAACAACTTGAGCCAGCGCTCTaGAGCCAGGCTGGCCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: CLLYKIRRGRPFLGHDEQLEPAL*SQAGQA Trigger: TGCCTGGCCAGCCTGGCTGCAGAGCGCTGGCTCAAG...TTGTTCATCATGTCCCAGGAAAGGGCGGCCCCTTCTTATTTTATACAATAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| 3UTR-3UTR CAA 90 bp | TGTTTATTGTATAAAATAAGAAGGGGCCGCCCTTTCCTGGGACATGATGAACAACCCATCACCCCAGCCTaGTCCTCATGCTTCCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: CLLYKIRRGRPFLGHDEQPITPA*SSCFPC Trigger: GCAGGGGAAGCATGAGGACAAGGCTGGGGTGATGGG...TTGTTCATCATGTCCCAGGAAAGGGCGGCCCCTTCTTATTTTATACAATAAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR CCA 90 bp | CACCCCTGCAACCCTGAGGGAGACCCGGCTCCCTCCTGGCCTCCCATAGGGACCGGTGTGTGTGGGCAGTaGTGCCGCACCTCTGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: HPCNPEGDPAPSWPPIGTGVCGQ*CRTSGY Trigger: GTACCCAGAGGTGCGGCACCACTGCCCACACACACC...GGTCCCTATGGGAGGCCAGGAGGGAGCCGGGTCTCCCTCAGGGTTGCAGGGGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR GCA 90 bp | AACACGAGCGCCTACTTGAGCCAGCGCTCTGCAGCCAGGCTGGCCAGGCAAGGCGGGGTAGGTTATGGGTaGCAGCTTCTTGTCCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: NTSAYLSQRSAARLARQGGVGYG*QLLVPQ Trigger: CTGCGGGACAAGAAGCTGGCACCCATAACCTACCCC...GCCTTGCCTGGCCAGCCTGGCTGCAGAGCGCTGGCTCAAGTAGGCGCTCGTGTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR CCA 90 bp | AACACGAGCGCCTACTTGAGCCAGCGCTCTGCAGCCAGGCTGGCCAGGCAAGGCTGCCCACCAGAAGGATaGGTGTGTGTGGGCAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: NTSAYLSQRSAARLARQGCPPEG*VCVGSG Trigger: ACCACTGCCCACACACACCCATCCTTCTGGTGGGCA...GCCTTGCCTGGCCAGCCTGGCTGCAGAGCGCTGGCTCAAGTAGGCGCTCGTGTT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR TCA 90 bp | AACACGAGCGCCTACTTGAGCCAGCGCTCTGCAGCCAGGCTGGCCAGGCAAGGCAGCACTCCAGGTACTTaGCGGAACCAATCTCTCGGG | + |
|
Preference number: 4 (lower is better) Translates to: NTSAYLSQRSAARLARQGSTPGT*RNQSLG Trigger: CCCGAGAGATTGGTTCCGTCAAGTACCTGGAGTGCT...GCCTTGCCTGGCCAGCCTGGCTGCAGAGCGCTGGCTCAAGTAGGCGCTCGTGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR CCA 90 bp | CACCCCTGCAACCCTGAGGGAGACCCGGCTCCCTCCTGGCCTCCCATAGGGACCAGTGCACTTCTTGCCTaGCTTTTTCACTGGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: HPCNPEGDPAPSWPPIGTSALLA*LFHWRW Trigger: CCACCTCCAGTGAAAAAGCCAGGCAAGAAGTGCACT...GGTCCCTATGGGAGGCCAGGAGGGAGCCGGGTCTCCCTCAGGGTTGCAGGGGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR TCA 90 bp | AACACGAGCGCCTACTTGAGCCAGCGCTCTGCAGCCAGGCTGGCCAGGCAAGGCCACCATCACGTTGGCTaGGTAGTTGTCGAAAACTGT | + |
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Preference number: 4 (lower is better) Translates to: NTSAYLSQRSAARLARQGHHHVG*VVVENC Trigger: ACAGTTTTCGACAACTACTCAGCCAACGTGATGGTG...GCCTTGCCTGGCCAGCCTGGCTGCAGAGCGCTGGCTCAAGTAGGCGCTCGTGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR CAA 90 bp | AACACGAGCGCCTACTTGAGCCAGCGCTCTGCAGCCAGGCTGGCCAGGCAAGGCATGGGTGCCAGCTTCTaGTCCCGCAGCCGTTCAATC | + |
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Preference number: 5 (lower is better) Translates to: NTSAYLSQRSAARLARQGMGASF*SRSRSI Trigger: GATTGAACGGCTGCGGGACAAGAAGCTGGCACCCAT...GCCTTGCCTGGCCAGCCTGGCTGCAGAGCGCTGGCTCAAGTAGGCGCTCGTGTT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR CAA 90 bp | AACACGAGCGCCTACTTGAGCCAGCGCTCTGCAGCCAGGCTGGCCAGGCAAGGCCGTTCAATCGTATCCTaGTCATCACGGAGGTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: NTSAYLSQRSAARLARQGRSIVS*SSRRSS Trigger: GCTGGACCTCCGTGATGACAAGGATACGATTGAACG...GCCTTGCCTGGCCAGCCTGGCTGCAGAGCGCTGGCTCAAGTAGGCGCTCGTGTT 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR CAA 90 bp | CACCCCTGCAACCCTGAGGGAGACCCGGCTCCCTCCTGGCCTCCCATAGGGACCAATACAGTGCACTTCTaGCCTGGCTTTTTCACTGGA | + |
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Preference number: 5 (lower is better) Translates to: HPCNPEGDPAPSWPPIGTNTVHF*PGFFTG Trigger: TCCAGTGAAAAAGCCAGGCAAGAAGTGCACTGTATT...GGTCCCTATGGGAGGCCAGGAGGGAGCCGGGTCTCCCTCAGGGTTGCAGGGGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS GCA 90 bp | ACCAATCTCTCGGGCCATGGCCAGGCCTTGGGGGTAGGTTATGGGTaGCAGCTTCTTGTCCCGCAGCCGTTCAATCGTATCCTTGTCATC | + |
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Preference number: 5 (lower is better) Translates to: TNLSGHGQALGVGYG*QLLVPQPFNRILVI Trigger: GATGACAAGGATACGATTGAACGGCTGCGGGACAAGAAGCTGGCACCCATAACCTACCCCCAAGGCCTGGCCATGGCCCGAGAGATTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018156.12 ENSMUST00000142229.2 |
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| CDS-3UTR CAA 90 bp | CCCCACAGCAGACTCAGGGACATCACACAGCTCAACACGAGCGCCTACTTGAGCCAGAAAGACATCTGTTaGAGGATAGGAGAGTGGCCG | + |
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Preference number: 5 (lower is better) Translates to: PHSRLRDITQLNTSAYLSQKDIC*RIGEWP Trigger: CGGCCACTCTCCTATCCTCAAACAGATGTCTTTCTG...GCTCAAGTAGGCGCTCGTGTTGAGCTGTGTGATGTCCCTGAGTCTGCTGTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR CAA 90 bp | TGTTTATTGTATAAAATAAGAAGGGGCCGCCCTTTCCTGGGACATGATGAACAAGGCCATGGCCAGGCCTaGGGGGTAGGTTATGGGTGC | + |
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Preference number: 5 (lower is better) Translates to: CLLYKIRRGRPFLGHDEQGHGQA*GVGYGC Trigger: GCACCCATAACCTACCCCCAAGGCCTGGCCATGGCC...TTGTTCATCATGTCCCAGGAAAGGGCGGCCCCTTCTTATTTTATACAATAAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS-3UTR CAA 90 bp | TGTTTATTGTATAAAATAAGAAGGGGCCGCCCTTTCCTGGGACATGATGAACAAACCTCTGGGTACCACTaGGCACGGACATTCTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: CLLYKIRRGRPFLGHDEQTSGYH*ARTFSK Trigger: CTTTGAGAATGTCCGTGCCAAGTGGTACCCAGAGGT...TTGTTCATCATGTCCCAGGAAAGGGCGGCCCCTTCTTATTTTATACAATAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018156.12 |
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| CDS GCA 72 bp | TCGGGCCATGGCCAGGCCTTGGGGGTAGGTTATGGGTaGCAGCTTCTTGTCCCGCAGCCGTTCAATCGTATC | + |
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Preference number: 6 (lower is better) Translates to: SGHGQALGVGYG*QLLVPQPFNRI Trigger: GATACGATTGAACGGCTGCGGGACAAGAAGCTGGCACCCATAACCTACCCCCAAGGCCTGGCCATGGCCCGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018156.12 ENSMUST00000142229.2 |
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