Pregenerated sensors for RAC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001847Ensembl transcript IDs: ENSMUST00000080537.14, ENSMUST00000100489.4
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACATGGCAACGTGTCATTAAGGAGGCTGTGCTGTGTCACACGGTCTaGGAACTCTGGAAGGGTCTGCACCCCTGGCTCCAGAAGCTGCGG | + |
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Preference number: 1 (lower is better) Translates to: TWQRVIKEAVLCHTV*ELWKGLHPWLQKLR Trigger: CCGCAGCTTCTGGAGCCAGGGGTGCAGACCCTTCCAGAGTTCCCAGACCGTGTGACACAGCACAGCCTCCTTAATGACACGTTGCCATGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR GCA 90 bp | AGGAGGCTGTGCTGTGTCACACGGTCTGGGAACTCTGGAAGGGTCTaGACCCCTGGCTCCAGAAGCTGCGGTCTTCTTAGCAACAGAAGT | + |
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Preference number: 1 (lower is better) Translates to: RRLCCVTRSGNSGRV*TPGSRSCGLLSNRS Trigger: ACTTCTGTTGCTAAGAAGACCGCAGCTTCTGGAGCCAGGGGTGCAGACCCTTCCAGAGTTCCCAGACCGTGTGACACAGCACAGCCTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR GCA 90 bp | CGGTCTGGGAACTCTGGAAGGGTCTGCACCCCTGGCTCCAGAAGCTaGGGTCTTCTTAGCAACAGAAGTCTCTCAAGAGAGTTTAGTGCT | + |
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Preference number: 1 (lower is better) Translates to: RSGNSGRVCTPGSRS*GLLSNRSLSREFSA Trigger: AGCACTAAACTCTCTTGAGAGACTTCTGTTGCTAAGAAGACCGCAGCTTCTGGAGCCAGGGGTGCAGACCCTTCCAGAGTTCCCAGACCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR TCA 90 bp | GCCCCACTCCACAAATGTGGCTGTGGGCTCACCTACCCTATTCTCTaGAGGTGGGACTCCATCCCTCCAGTGATCCAGGGTTTAAAAGTA | + |
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Preference number: 1 (lower is better) Translates to: APLHKCGCGLTYPIL*RWDSIPPVIQGLKV Trigger: TACTTTTAAACCCTGGATCACTGGAGGGATGGAGTCCCACCTTCAGAGAATAGGGTAGGTGAGCCCACAGCCACATTTGTGGAGTGGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR GCA 90 bp | TATCCCAGCATTCAGAGCAGGGGCAGACCATTCTCTGCCAGCTCATaGACAGCCTGTTCCAAAGTGAGTTCTAGGCCAGCCAGAATAACC | + |
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Preference number: 1 (lower is better) Translates to: YPSIQSRGRPFSASS*TACSKVSSRPARIT Trigger: GGTTATTCTGGCTGGCCTAGAACTCACTTTGGAACAGGCTGTGCATGAGCTGGCAGAGAATGGTCTGCCCCTGCTCTGAATGCTGGGATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR CCA 90 bp | TTTGATTTTTCAAGACCGGGTTCCTCTGTGTGGCGCTGGCTGTCCTaGACTCACCCTGTAGACCAGGCTGGCCTCAAAACTCAGATTTGC | + |
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Preference number: 1 (lower is better) Translates to: FDFSRPGSSVWRWLS*THPVDQAGLKTQIC Trigger: GCAAATCTGAGTTTTGAGGCCAGCCTGGTCTACAGGGTGAGTCCAGGACAGCCAGCGCCACACAGAGGAACCCGGTCTTGAAAAATCAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR GCA 90 bp | CTGCCTCTGCCTCTGAGTGTTGGGACTAACGGCATGGGCCACCACTaGCTGGCCTATGGAACCACTTTTAACCATAGTATTAACAGGATC | + |
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Preference number: 1 (lower is better) Translates to: LPLPLSVGTNGMGHH*LAYGTTFNHSINRI Trigger: GATCCTGTTAATACTATGGTTAAAAGTGGTTCCATAGGCCAGGCAGTGGTGGCCCATGCCGTTAGTCCCAACACTCAGAGGCAGAGGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR GCA 90 bp | ACGAGTCTGAACTTTAAGACAACAGATGAGCACTTTATACTTGCCTaGGTCTTTCCGGGGTCACTAGGACAGCCTGAGTGTCCTCTGAGC | + |
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Preference number: 1 (lower is better) Translates to: TSLNFKTTDEHFILA*VFPGSLGQPECPLS Trigger: GCTCAGAGGACACTCAGGCTGTCCTAGTGACCCCGGAAAGACGCAGGCAAGTATAAAGTGCTCATCTGTTGTCTTAAAGTTCAGACTCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR TCA 90 bp | ATGGTACAAATTTTAATCCCAGCACGAGGGAGTTTGAGGCCAGCCTaGTCTATATCCCACAGAGAAATGTGCGTGCACACACATGTAATT | + |
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Preference number: 1 (lower is better) Translates to: MVQILIPARGSLRPA*SISHREMCVHTHVI Trigger: AATTACATGTGTGTGCACGCACATTTCTCTGTGGGATATAGATCAGGCTGGCCTCAAACTCCCTCGTGCTGGGATTAAAATTTGTACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR TCA 90 bp | CTAGTCGGCTGGTCTTTTAGAAAACTCACTATGAAATCAAAGAGCTaGGCTGTCACACTCATCACTGTGACGTACAGTACAAAGTTACGT | + |
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Preference number: 1 (lower is better) Translates to: LVGWSFRKLTMKSKS*AVTLITVTYSTKLR Trigger: ACGTAACTTTGTACTGTACGTCACAGTGATGAGTGTGACAGCTCAGCTCTTTGATTTCATAGTGAGTTTTCTAAAAGACCAGCCGACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR GCA 90 bp | GTACCCAGGGGTGATGAGGTTTCACCTTTCCATTCTAAATCAAGTTaGCTTGTCTCTCTGGTTACTAAGAACTACATACATTACGGAATC | + |
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Preference number: 1 (lower is better) Translates to: VPRGDEVSPFHSKSS*LVSLVTKNYIHYGI Trigger: GATTCCGTAATGTATGTAGTTCTTAGTAACCAGAGAGACAAGGCAACTTGATTTAGAATGGAAAGGTGAAACCTCATCACCCCTGGGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR GCA 90 bp | AGGCAGAGCCATGACAGGAAGCGTCTGTCCACGTGGGCGAGGTCTAGAGGCAGCAACTCTGGAAGGGTCTaGACCCCTGGCTCCAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: RQSHDRKRLSTWARSRGSNSGRV*TPGSRS Trigger: GCTTCTGGAGCCAGGGGTGCAGACCCTTCCAGAGTT...GCTGCCTCTAGACCTCGCCCACGTGGACAGACGCTTCCTGTCATGGCTCTGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR-3UTR CCA 90 bp | TTATCTTCACCACTTAGATGTGGGCAGGAGGACCAGACACTGGAGGTCACAACTGACGGCAGTGGAGGGTaGGGGGCGCGAAGGGATGCT | + |
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Preference number: 2 (lower is better) Translates to: LSSPLRCGQEDQTLEVTTDGSGG*GARRDA Trigger: AGCATCCCTTCGCGCCCCCCACCCTCCACTGCCGTC...AGTTGTGACCTCCAGTGTCTGGTCCTCCTGCCCACATCTAAGTGGTGAAGATAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR CCA 90 bp | CAGGGGCAGACCATTCTCTGCCAGCTCATGCACAGCCTGTTCCAAAGTGAGTTCAGACATACCCCACTGTaGGGAGCCCCACACAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: QGQTILCQLMHSLFQSEFRHTPL*GAPHKH Trigger: GTGCTTGTGTGGGGCTCCCCACAGTGGGGTATGTCT...GAACTCACTTTGGAACAGGCTGTGCATGAGCTGGCAGAGAATGGTCTGCCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR TCA 90 bp | GCCAGTTTAAATATGGACTCAACGCCCCATCTGGGGAGGGACGGCAGTGGAGGGATGAAATCAAAGAGCTaGGCTGTCACACTCATCACT | + |
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Preference number: 2 (lower is better) Translates to: ASLNMDSTPHLGRDGSGGMKSKS*AVTLIT Trigger: AGTGATGAGTGTGACAGCTCAGCTCTTTGATTTCAT...CCCTCCACTGCCGTCCCTCCCCAGATGGGGCGTTGAGTCCATATTTAAACTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR-3UTR TCA 90 bp | TGCGTCTTTCCGGGGTCACTAGGACAGCCTGAGTGTCCTCTGAGCTGGCACTGCTGGCAATTTTTAATCTaGGCAAGAATGGGGGATTTT | + |
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Preference number: 2 (lower is better) Translates to: CVFPGSLGQPECPLSWHCWQFLI*ARMGDF Trigger: AAAATCCCCCATTCTTGCTCAGATTAAAAATTGCCA...GCAGTGCCAGCTCAGAGGACACTCAGGCTGTCCTAGTGACCCCGGAAAGACGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR TCA 90 bp | CAGGGGCAGACCATTCTCTGCCAGCTCATGCACAGCCTGTTCCAAAGTGAGTTCACTGTCTGTCTCCTTTaGTCATGTCGTGTTTCACAC | + |
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Preference number: 2 (lower is better) Translates to: QGQTILCQLMHSLFQSEFTVCLL*SCRVSH Trigger: GTGTGAAACACGACATGATCAAAGGAGACAGACAGT...GAACTCACTTTGGAACAGGCTGTGCATGAGCTGGCAGAGAATGGTCTGCCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR GCA 90 bp | AGCATTCAGAGCAGGGGCAGACCATTCTCTGCCAGCTCATGCACAGCCTGTTCCACAGGTCAGACATATTaGTCGTTAAGAAGGGGTTCT | + |
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Preference number: 2 (lower is better) Translates to: SIQSRGRPFSASSCTACSTGQTY*SLRRGS Trigger: AGAACCCCTTCTTAACGAGCAATATGTCTGACCTGT...GGAACAGGCTGTGCATGAGCTGGCAGAGAATGGTCTGCCCCTGCTCTGAATGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR TCA 90 bp | GGAAATGGTACAAATTTTAATCCCAGCACGAGGGAGTTTGAGGCCAGCCTGATCGTTAGCACTAGCAGTTaGCAGAACCTCACAGACCCC | + |
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Preference number: 2 (lower is better) Translates to: GNGTNFNPSTREFEASLIVSTSS*QNLTDP Trigger: GGGGTCTGTGAGGTTCTGTCAACTGCTAGTGCTAAC...GATCAGGCTGGCCTCAAACTCCCTCGTGCTGGGATTAAAATTTGTACCATTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR TCA 90 bp | GGAAGGGTCTGCACCCCTGGCTCCAGAAGCTGCGGTCTTCTTAGCAACAGAAGTTGGCAATTTTTAATCTaGGCAAGAATGGGGGATTTT | + |
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Preference number: 2 (lower is better) Translates to: GRVCTPGSRSCGLLSNRSWQFLI*ARMGDF Trigger: AAAATCCCCCATTCTTGCTCAGATTAAAAATTGCCA...ACTTCTGTTGCTAAGAAGACCGCAGCTTCTGGAGCCAGGGGTGCAGACCCTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR-3UTR TCA 90 bp | GGAAATGGTACAAATTTTAATCCCAGCACGAGGGAGTTTGAGGCCAGCCTGATCCTGCATTCTTGCCAGTaGGTTAGGTTGTACAGGACA | + |
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Preference number: 2 (lower is better) Translates to: GNGTNFNPSTREFEASLILHSCQ*VRLYRT Trigger: TGTCCTGTACAACCTAACTCACTGGCAAGAATGCAG...GATCAGGCTGGCCTCAAACTCCCTCGTGCTGGGATTAAAATTTGTACCATTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR GCA 90 bp | GATGCTCAAGAGACACTGATAAGATCGGCCATTTGTCACCTACTGTTTGACAGACCTGGCTCCAGAAGCTaGGGTCTTCTTAGCAACAGA | + |
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Preference number: 2 (lower is better) Translates to: DAQETLIRSAICHLLFDRPGSRS*GLLSNR Trigger: TCTGTTGCTAAGAAGACCGCAGCTTCTGGAGCCAGG...TCTGTCAAACAGTAGGTGACAAATGGCCGATCTTATCAGTGTCTCTTGAGCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR-3UTR CCA 90 bp | TTATCTTCACCACTTAGATGTGGGCAGGAGGACCAGACACTGGAGGTCACAACTTACAGGTGCGTTACATaGCAACGTGTCATTAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: LSSPLRCGQEDQTLEVTTYRCVT*QRVIKE Trigger: CTCCTTAATGACACGTTGCCATGTAACGCACCTGTA...AGTTGTGACCTCCAGTGTCTGGTCCTCCTGCCCACATCTAAGTGGTGAAGATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR TCA 90 bp | CTCCATCCCTCCAGTGATCCAGGGTTTAAAAGTAGAGCAAACACGCCAAGAGCTGCAGCATTAGTCACATaGCAGTGTTGGTACTGTTTA | + |
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Preference number: 2 (lower is better) Translates to: LHPSSDPGFKSRANTPRAAALVT*QCWYCL Trigger: TAAACAGTACCAACACTGTCATGTGACTAATGCTGC...AGCTCTTGGCGTGTTTGCTCTACTTTTAAACCCTGGATCACTGGAGGGATGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR CCA 90 bp | CAAGAGCTTGTCAAATTCCAAAAACACAAGCATAACCAGTTGTATGATTCAAGGAAGGGTCTGCACCCCTaGCTCCAGAAGCTGCGGTCT | + |
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Preference number: 2 (lower is better) Translates to: QELVKFQKHKHNQLYDSRKGLHP*LQKLRS Trigger: AGACCGCAGCTTCTGGAGCCAGGGGTGCAGACCCTT...CCTTGAATCATACAACTGGTTATGCTTGTGTTTTTGGAATTTGACAAGCTCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR CCA 90 bp | TTATCTTCACCACTTAGATGTGGGCAGGAGGACCAGACACTGGAGGTCACAACTCGTCAGGATTTAGACTaGGAAATGGTACAAATTTTA | + |
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Preference number: 2 (lower is better) Translates to: LSSPLRCGQEDQTLEVTTRQDLD*EMVQIL Trigger: TAAAATTTGTACCATTTCCCAGTCTAAATCCTGACG...AGTTGTGACCTCCAGTGTCTGGTCCTCCTGCCCACATCTAAGTGGTGAAGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR TCA 90 bp | GTGATCCAGGGTTTAAAAGTAGAGCAAACACGCCAAGAGCTTGTCAAATTCCAAATGAAATCAAAGAGCTaGGCTGTCACACTCATCACT | + |
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Preference number: 2 (lower is better) Translates to: VIQGLKVEQTRQELVKFQMKSKS*AVTLIT Trigger: AGTGATGAGTGTGACAGCTCAGCTCTTTGATTTCAT...TTGGAATTTGACAAGCTCTTGGCGTGTTTGCTCTACTTTTAAACCCTGGATCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR CCA 72 bp | AAGGAGGCTGTGCTGTGTCACACGGTCTGGGAACTCTaGAAGGGTCTGCACCCCTGGCTCCAGAAGCTGCGG | + |
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Preference number: 3 (lower is better) Translates to: KEAVLCHTVWEL*KGLHPWLQKLR Trigger: CCGCAGCTTCTGGAGCCAGGGGTGCAGACCCTTCCAGAGTTCCCAGACCGTGTGACACAGCACAGCCTCCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR GCA 72 bp | TGCTGTGTCACACGGTCTGGGAACTCTGGAAGGGTCTaGACCCCTGGCTCCAGAAGCTGCGGTCTTCTTAGC | + |
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Preference number: 3 (lower is better) Translates to: CCVTRSGNSGRV*TPGSRSCGLLS Trigger: GCTAAGAAGACCGCAGCTTCTGGAGCCAGGGGTGCAGACCCTTCCAGAGTTCCCAGACCGTGTGACACAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR CCA 72 bp | CGTGTCATTAAGGAGGCTGTGCTGTGTCACACGGTCTaGGAACTCTGGAAGGGTCTGCACCCCTGGCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: RVIKEAVLCHTV*ELWKGLHPWLQ Trigger: CTGGAGCCAGGGGTGCAGACCCTTCCAGAGTTCCCAGACCGTGTGACACAGCACAGCCTCCTTAATGACACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR CCA 72 bp | TCAAGACCGGGTTCCTCTGTGTGGCGCTGGCTGTCCTaGACTCACCCTGTAGACCAGGCTGGCCTCAAAACT | + |
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Preference number: 3 (lower is better) Translates to: SRPGSSVWRWLS*THPVDQAGLKT Trigger: AGTTTTGAGGCCAGCCTGGTCTACAGGGTGAGTCCAGGACAGCCAGCGCCACACAGAGGAACCCGGTCTTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR TCA 72 bp | CTGGCCTCAAAACTCAGATTTGCCTGCCTCTGCCTCTaGGTGTTGGGACTAACGGCATGGGCCACCACTGCC | + |
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Preference number: 3 (lower is better) Translates to: LASKLRFACLCL*VLGLTAWATTA Trigger: GGCAGTGGTGGCCCATGCCGTTAGTCCCAACACTCAGAGGCAGAGGCAGGCAAATCTGAGTTTTGAGGCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR CCA 72 bp | ACGGCTCAAACCAGCCCCACTCCACAAATGTGGCTGTaGGCTCACCTACCCTATTCTCTGAAGGTGGGACTC | + |
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Preference number: 3 (lower is better) Translates to: TAQTSPTPQMWL*AHLPYSLKVGL Trigger: GAGTCCCACCTTCAGAGAATAGGGTAGGTGAGCCCACAGCCACATTTGTGGAGTGGGGCTGGTTTGAGCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR CCA 72 bp | CAGGATGGCTTGGCTAGTGTCGCACGTGTGAGGACTTaGGTTCGAATCTGCTGGAGAGCGGTTAAGAGGCTC | + |
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Preference number: 3 (lower is better) Translates to: QDGLASVARVRT*VRICWRAVKRL Trigger: GAGCCTCTTAACCGCTCTCCAGCAGATTCGAACCCAAGTCCTCACACGTGCGACACTAGCCAAGCCATCCTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR TCA 72 bp | CACAAATGTGGCTGTGGGCTCACCTACCCTATTCTCTaGAGGTGGGACTCCATCCCTCCAGTGATCCAGGGT | + |
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Preference number: 3 (lower is better) Translates to: HKCGCGLTYPIL*RWDSIPPVIQG Trigger: ACCCTGGATCACTGGAGGGATGGAGTCCCACCTTCAGAGAATAGGGTAGGTGAGCCCACAGCCACATTTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR GCA 72 bp | GGTGCGTTACATGGCAACGTGTCATTAAGGAGGCTGTaGTGTGTCACACGGTCTGGGAACTCTGGAAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: GALHGNVSLRRL*CVTRSGNSGRV Trigger: GACCCTTCCAGAGTTCCCAGACCGTGTGACACAGCACAGCCTCCTTAATGACACGTTGCCATGTAACGCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR GCA 72 bp | ATTCAGAGCAGGGGCAGACCATTCTCTGCCAGCTCATaGACAGCCTGTTCCAAAGTGAGTTCTAGGCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: IQSRGRPFSASS*TACSKVSSRPA Trigger: GGCTGGCCTAGAACTCACTTTGGAACAGGCTGTGCATGAGCTGGCAGAGAATGGTCTGCCCCTGCTCTGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR GCA 72 bp | AACTCTGGAAGGGTCTGCACCCCTGGCTCCAGAAGCTaGGGTCTTCTTAGCAACAGAAGTCTCTCAAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: NSGRVCTPGSRS*GLLSNRSLSRE Trigger: CTCTCTTGAGAGACTTCTGTTGCTAAGAAGACCGCAGCTTCTGGAGCCAGGGGTGCAGACCCTTCCAGAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR GCA 72 bp | TTATCCCAGCATTCAGAGCAGGGGCAGACCATTCTCTaGCAGCTCATGCACAGCCTGTTCCAAAGTGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: LSQHSEQGQTIL*QLMHSLFQSEF Trigger: GAACTCACTTTGGAACAGGCTGTGCATGAGCTGGCAGAGAATGGTCTGCCCCTGCTCTGAATGCTGGGATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR CCA 72 bp | TTAACAACGGCTCAAACCAGCCCCACTCCACAAATGTaGCTGTGGGCTCACCTACCCTATTCTCTGAAGGTG | + |
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Preference number: 3 (lower is better) Translates to: LTTAQTSPTPQM*LWAHLPYSLKV Trigger: CACCTTCAGAGAATAGGGTAGGTGAGCCCACAGCCACATTTGTGGAGTGGGGCTGGTTTGAGCCGTTGTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR CAA 90 bp | AGCATTCAGAGCAGGGGCAGACCATTCTCTGCCAGCTCATGCACAGCCTGTTCCAGTCACATGACAGTGTaGGTACTGTTTAGAAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: SIQSRGRPFSASSCTACSSHMTV*VLFRRF Trigger: GAACCTTCTAAACAGTACCAACACTGTCATGTGACT...GGAACAGGCTGTGCATGAGCTGGCAGAGAATGGTCTGCCCCTGCTCTGAATGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR CAA 90 bp | CAGGGGCAGACCATTCTCTGCCAGCTCATGCACAGCCTGTTCCAAAGTGAGTTCTACTGTCTGTCTCCTTaGATCATGTCGTGTTTCACA | + |
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Preference number: 3 (lower is better) Translates to: QGQTILCQLMHSLFQSEFYCLSP*IMSCFT Trigger: TGTGAAACACGACATGATCAAAGGAGACAGACAGTA...GAACTCACTTTGGAACAGGCTGTGCATGAGCTGGCAGAGAATGGTCTGCCCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR GCA 72 bp | AACTTTAAGACAACAGATGAGCACTTTATACTTGCCTaGGTCTTTCCGGGGTCACTAGGACAGCCTGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: NFKTTDEHFILA*VFPGSLGQPEC Trigger: ACACTCAGGCTGTCCTAGTGACCCCGGAAAGACGCAGGCAAGTATAAAGTGCTCATCTGTTGTCTTAAAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR-3UTR CAA 90 bp | GATGCTCAAGAGACACTGATAAGATCGGCCATTTGTCACCTACTGTTTGACAGATACTGTCTGTCTCCTTaGATCATGTCGTGTTTCACA | + |
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Preference number: 3 (lower is better) Translates to: DAQETLIRSAICHLLFDRYCLSP*IMSCFT Trigger: TGTGAAACACGACATGATCAAAGGAGACAGACAGTA...TCTGTCAAACAGTAGGTGACAAATGGCCGATCTTATCAGTGTCTCTTGAGCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR TCA 72 bp | CTACTTCATATTAGTCAAAATACTGTCTGTCTCCTTTaGTCATGTCGTGTTTCACACTCCACCCAGCACACC | + |
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Preference number: 3 (lower is better) Translates to: LLHISQNTVCLL*SCRVSHSTQHT Trigger: GGTGTGCTGGGTGGAGTGTGAAACACGACATGATCAAAGGAGACAGACAGTATTTTGACTAATATGAAGTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| 3UTR GCA 72 bp | GGTGATGAGGTTTCACCTTTCCATTCTAAATCAAGTTaGCTTGTCTCTCTGGTTACTAAGAACTACATACAT | + |
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Preference number: 3 (lower is better) Translates to: GDEVSPFHSKSS*LVSLVTKNYIH Trigger: ATGTATGTAGTTCTTAGTAACCAGAGAGACAAGGCAACTTGATTTAGAATGGAAAGGTGAAACCTCATCACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| 3UTR CCA 72 bp | CACCTTTCCATTCTAAATCAAGTTGCCTTGTCTCTCTaGTTACTAAGAACTACATACATTACGGAATCCAAC | + |
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Preference number: 3 (lower is better) Translates to: HLSILNQVALSL*LLRTTYITESN Trigger: GTTGGATTCCGTAATGTATGTAGTTCTTAGTAACCAGAGAGACAAGGCAACTTGATTTAGAATGGAAAGGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| CDS-3UTR CCA 90 bp | TCTGCACCCCTGGCTCCAGAAGCTGCGGTCTTCTTAGCAACAGAAGTCTCTCAACGATCTCTTTCGCCATaGCCAGCCCCTGCGGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: SAPLAPEAAVFLATEVSQRSLSP*PAPAGR Trigger: CCTACCCGCAGGGGCTGGCCATGGCGAAAGAGATCG...TTGAGAGACTTCTGTTGCTAAGAAGACCGCAGCTTCTGGAGCCAGGGGTGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| CDS-3UTR CCA 90 bp | AACGTGTCATTAAGGAGGCTGTGCTGTGTCACACGGTCTGGGAACTCTGGAAGGCGATCTCTTTCGCCATaGCCAGCCCCTGCGGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: NVSLRRLCCVTRSGNSGRRSLSP*PAPAGR Trigger: CCTACCCGCAGGGGCTGGCCATGGCGAAAGAGATCG...CCTTCCAGAGTTCCCAGACCGTGTGACACAGCACAGCCTCCTTAATGACACGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| CDS-3UTR CCA 90 bp | GGAAGGGTCTGCACCCCTGGCTCCAGAAGCTGCGGTCTTCTTAGCAACAGAAGTGGAGTATTGGGACAGTaGTGTCGCACTTCAGGATAC | + |
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Preference number: 4 (lower is better) Translates to: GRVCTPGSRSCGLLSNRSGVLGQ*CRTSGY Trigger: GTATCCTGAAGTGCGACACCACTGTCCCAATACTCC...ACTTCTGTTGCTAAGAAGACCGCAGCTTCTGGAGCCAGGGGTGCAGACCCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| CDS-3UTR CCA 90 bp | TCATTAAGGAGGCTGTGCTGTGTCACACGGTCTGGGAACTCTGGAAGGGTCTGCGGAGTATTGGGACAGTaGTGTCGCACTTCAGGATAC | + |
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Preference number: 4 (lower is better) Translates to: SLRRLCCVTRSGNSGRVCGVLGQ*CRTSGY Trigger: GTATCCTGAAGTGCGACACCACTGTCCCAATACTCC...GCAGACCCTTCCAGAGTTCCCAGACCGTGTGACACAGCACAGCCTCCTTAATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080537.14 ENSMUST00000100489.4 |
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| CDS-3UTR GCA 90 bp | TCTGCACCCCTGGCTCCAGAAGCTGCGGTCTTCTTAGCAACAGAAGTCTCTCAACAATCGGCTTGTCTTTaGCCCTGGAGGGTCTATCTT | + |
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Preference number: 4 (lower is better) Translates to: SAPLAPEAAVFLATEVSQQSACL*PWRVYL Trigger: AAGATAGACCCTCCAGGGGCAAAGACAAGCCGATTG...TTGAGAGACTTCTGTTGCTAAGAAGACCGCAGCTTCTGGAGCCAGGGGTGCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100489.4 |
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| 3UTR CAA 72 bp | TCATGTATGCCCTGGAGCTATGATGGGTATAAAGACTaGATGGTCAGGTCAACAAGGCAGCCAGGATGGCTT | + |
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Preference number: 4 (lower is better) Translates to: SCMPWSYDGYKD*MVRSTRQPGWL Trigger: AAGCCATCCTGGCTGCCTTGTTGACCTGACCATCAAGTCTTTATACCCATCATAGCTCCAGGGCATACATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| CDS-3UTR CCA 90 bp | CCAGAAGCTGCGGTCTTCTTAGCAACAGAAGTCTCTCAAGAGAGTTTAGTGCTTGCTTGTCTTTGCCCCTaGAGGGTCTATCTTTACCAC | + |
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Preference number: 4 (lower is better) Translates to: PEAAVFLATEVSQESLVLACLCP*RVYLYH Trigger: GTGGTAAAGATAGACCCTCCAGGGGCAAAGACAAGC...AAGCACTAAACTCTCTTGAGAGACTTCTGTTGCTAAGAAGACCGCAGCTTCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100489.4 |
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| 3UTR CAA 72 bp | ATGAGGTTTCACCTTTCCATTCTAAATCAAGTTGCCTaGTCTCTCTGGTTACTAAGAACTACATACATTACG | + |
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Preference number: 4 (lower is better) Translates to: MRFHLSILNQVA*SLWLLRTTYIT Trigger: CGTAATGTATGTAGTTCTTAGTAACCAGAGAGACAAGGCAACTTGATTTAGAATGGAAAGGTGAAACCTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080537.14 |
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| CDS-3UTR CAA 90 bp | AACGTGTCATTAAGGAGGCTGTGCTGTGTCACACGGTCTGGGAACTCTGGAAGGACGTCGGCAATCGGCTaGTCTTTGCCCCTGGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: NVSLRRLCCVTRSGNSGRTSAIG*SLPLEG Trigger: ACCCTCCAGGGGCAAAGACAAGCCGATTGCCGACGT...CCTTCCAGAGTTCCCAGACCGTGTGACACAGCACAGCCTCCTTAATGACACGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100489.4 |
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| CDS CCA 90 bp | AAAAGCAAATTAAGAACACGTCGGCAATCGGCTTGTCTTTGCCCCTaGAGGGTCTATCTTTACCACATGTGTCTCCAACTGTCTGCGGGT | + |
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Preference number: 5 (lower is better) Translates to: KSKLRTRRQSACLCP*RVYLYHMCLQLSAG Trigger: ACCCGCAGACAGTTGGAGACACATGTGGTAAAGATAGACCCTCCAGGGGCAAAGACAAGCCGATTGCCGACGTGTTCTTAATTTGCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100489.4 |
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| CDS-3UTR CAA 90 bp | GATGCTCAAGAGACACTGATAAGATCGGCCATTTGTCACCTACTGTTTGACAGAGCAATCGGCTTGTCTTaGCCCCTGGAGGGTCTATCT | + |
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Preference number: 5 (lower is better) Translates to: DAQETLIRSAICHLLFDRAIGLS*PLEGLS Trigger: AGATAGACCCTCCAGGGGCAAAGACAAGCCGATTGC...TCTGTCAAACAGTAGGTGACAAATGGCCGATCTTATCAGTGTCTCTTGAGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100489.4 |
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| CDS GCA 72 bp | AGCAAATTAAGAACACGTCGGCAATCGGCTTGTCTTTaGCCCTGGAGGGTCTATCTTTACCACATGTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SKLRTRRQSACL*PWRVYLYHMCL Trigger: GAGACACATGTGGTAAAGATAGACCCTCCAGGGGCAAAGACAAGCCGATTGCCGACGTGTTCTTAATTTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100489.4 |
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| CDS CAA 72 bp | AAGCAAATTAAGAACACGTCGGCAATCGGCTTGTCTTaGCCCCTGGAGGGTCTATCTTTACCACATGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: KQIKNTSAIGLS*PLEGLSLPHVS Trigger: AGACACATGTGGTAAAGATAGACCCTCCAGGGGCAAAGACAAGCCGATTGCCGACGTGTTCTTAATTTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100489.4 |
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