Pregenerated sensors for RABIF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042229Ensembl transcript IDs: ENSMUST00000047978.9
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTGAGAGGAAGAAGCGAGCCCTGGGTCAAGGCATGGAGGCGGAGTaGCAGGGACCAGGCTACACTGGTAGAGTACTTGCATGTTCTTCC | + |
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Preference number: 1 (lower is better) Translates to: VERKKRALGQGMEAE*QGPGYTGRVLACSS Trigger: GGAAGAACATGCAAGTACTCTACCAGTGTAGCCTGGTCCCTGGCACTCCGCCTCCATGCCTTGACCCAGGGCTCGCTTCTTCCTCTCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CCA 90 bp | ATGCTGCTCTTGTTGAGAGGAAGAAGCGAGCCCTGGGTCAAGGCATaGAGGCGGAGTGCCAGGGACCAGGCTACACTGGTAGAGTACTTG | + |
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Preference number: 1 (lower is better) Translates to: MLLLLRGRSEPWVKA*RRSARDQATLVEYL Trigger: CAAGTACTCTACCAGTGTAGCCTGGTCCCTGGCACTCCGCCTCCATGCCTTGACCCAGGGCTCGCTTCTTCCTCTCAACAAGAGCAGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CCA 90 bp | AGAAGGGGCATGAACTGGAGTTACAGGCAGCTGGGAGCCTCCTGCTaGGAGCTGGGTACTGAATTCGGGTCCTCTGAGAGAGCAGCAAAC | + |
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Preference number: 1 (lower is better) Translates to: RRGMNWSYRQLGASC*ELGTEFGSSERAAN Trigger: GTTTGCTGCTCTCTCAGAGGACCCGAATTCAGTACCCAGCTCCCAGCAGGAGGCTCCCAGCTGCCTGTAACTCCAGTTCATGCCCCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR GCA 90 bp | ACGGAAGCAGGACTGGCCCTCTGCAGGTTCAAGGGCAAACACCAGTaGTCGTCATTTATATTAGTACCAACAAGTCTGCCAGCACAGCTG | + |
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Preference number: 1 (lower is better) Translates to: TEAGLALCRFKGKHQ*SSFILVPTSLPAQL Trigger: CAGCTGTGCTGGCAGACTTGTTGGTACTAATATAAATGACGAGCACTGGTGTTTGCCCTTGAACCTGCAGAGGGCCAGTCCTGCTTCCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR TCA 90 bp | GCACCACCATGGAACACTAGCAAGAGTGTGCAGGGCTGGGCGTACTaGCAAGAAAGACATTACCTATGCTGTTACACAGAAAGCAGGCTG | + |
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Preference number: 1 (lower is better) Translates to: APPWNTSKSVQGWAY*QERHYLCCYTESRL Trigger: CAGCCTGCTTTCTGTGTAACAGCATAGGTAATGTCTTTCTTGTCAGTACGCCCAGCCCTGCACACTCTTGCTAGTGTTCCATGGTGGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR GCA 90 bp | GGCTGTCTCAGTTGTTCTCTTGCAAACCCCACACTCAGGAGTGCTTaGCTATTTGCTGGAAAACATGGTCTCTCCTTTGCGCTTAGAACC | + |
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Preference number: 1 (lower is better) Translates to: GCLSCSLANPTLRSA*LFAGKHGLSFALRT Trigger: GGTTCTAAGCGCAAAGGAGAGACCATGTTTTCCAGCAAATAGGCAAGCACTCCTGAGTGTGGGGTTTGCAAGAGAACAACTGAGACAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR TCA 90 bp | AGAAAGCAGGCTGTAAAGGAGTACAGTATGACCTCACGTTTGCTTTaGAAACTACATTTGCATACGCGCACAGAAAGACGCCGAGGATGT | + |
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Preference number: 1 (lower is better) Translates to: RKQAVKEYSMTSRLL*KLHLHTRTERRRGC Trigger: ACATCCTCGGCGTCTTTCTGTGCGCGTATGCAAATGTAGTTTTCAAAGCAAACGTGAGGTCATACTGTACTCCTTTACAGCCTGCTTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR GCA 90 bp | GGACAAGTAGGTCACATACAACGAATGAACTCTCAAATACTTGTATaGTTTATGTTTTATGAGACAGTGTCTCACCTGGCCCAGGCTATG | + |
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Preference number: 1 (lower is better) Translates to: GQVGHIQRMNSQILV*FMFYETVSHLAQAM Trigger: CATAGCCTGGGCCAGGTGAGACACTGTCTCATAAAACATAAAGCATACAAGTATTTGAGAGTTCATTCGTTGTATGTGACCTACTTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR TCA 90 bp | GCATGTTCTTCCATGTTCCAAAACAGGGGAAAGGGCTTTAGGACAAGGTGCGACGTCTGCCAGCACAGCTaGCACACCAGGTCCAGTGTC | + |
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Preference number: 2 (lower is better) Translates to: ACSSMFQNRGKGFRTRCDVCQHS*HTRSSV Trigger: GACACTGGACCTGGTGTGTCAGCTGTGCTGGCAGAC...GTCGCACCTTGTCCTAAAGCCCTTTCCCCTGTTTTGGAACATGGAAGAACATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CCA 90 bp | GGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACACCCAGAGGAAGAAGCGAGCCCTaGGTCAAGGCATGGAGGCGG | + |
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Preference number: 2 (lower is better) Translates to: GTLKRKPFKSFSKGRTPRGRSEP*VKAWRR Trigger: CCGCCTCCATGCCTTGACCCAGGGCTCGCTTCTTCC...TCTGGGTGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 90 bp | GCATGGAGGCGGAGTGCCAGGGACCAGGCTACACTGGTAGAGTACTaGCATGTTCTTCCATGTTCCAAAACAGGGGAAAGGGCTTTAGGA | + |
|
Preference number: 2 (lower is better) Translates to: AWRRSARDQATLVEY*HVLPCSKTGERALG Trigger: TCCTAAAGCCCTTTCCCCTGTTTTGGAACATGGAAGAACATGCAAGTACTCTACCAGTGTAGCCTGGTCCCTGGCACTCCGCCTCCATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR TCA 90 bp | GGCGTACTGACAAGAAAGACATTACCTATGCTGTTACACAGAAAGCAGGCTGTAGCATGCTCTGAGGCCTaGCGGAAGCAGGACTGGCCC | + |
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Preference number: 2 (lower is better) Translates to: GVLTRKTLPMLLHRKQAVACSEA*RKQDWP Trigger: GGGCCAGTCCTGCTTCCGTCAGGCCTCAGAGCATGC...TACAGCCTGCTTTCTGTGTAACAGCATAGGTAATGTCTTTCTTGTCAGTACGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR TCA 90 bp | TGGGTACTGAATTCGGGTCCTCTGAGAGAGCAGCAAACATTCTTAACTGTGAGAGTGGGAGGCATGCTCTaGGGCCTGACGGAAGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: WVLNSGPLREQQTFLTVRVGGML*GLTEAG Trigger: TCCTGCTTCCGTCAGGCCTCAGAGCATGCCTCCCAC...TCTCACAGTTAAGAATGTTTGCTGCTCTCTCAGAGGACCCGAATTCAGTACCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR TCA 90 bp | TGGGCGGGGAAGGAAGCGAGCAGGGTGCCAGTAAAACCTTGCCCAAGACATGGGCACCCAGAAAACAGATaGCAAGGTTTAATCCGTAAA | + |
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Preference number: 2 (lower is better) Translates to: WAGKEASRVPVKPCPRHGHPENR*QGLIRK Trigger: TTTACGGATTAAACCTTGTCATCTGTTTTCTGGGTG...CCCATGTCTTGGGCAAGGTTTTACTGGCACCCTGCTCGCTTCCTTCCCCGCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CCA 90 bp | CTGACAAGAAAGACATTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGCCCTGGGTCAAGGCATaGAGGCGGAGTGCCAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: LTRKTLPMLLHRKQAVKEPWVKA*RRSARD Trigger: GTCCCTGGCACTCCGCCTCCATGCCTTGACCCAGGG...CTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAATGTCTTTCTTGTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CCA 90 bp | GGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACACCCAGACTGGGAGCCTCCTGCTaGGAGCTGGGTACTGAATTC | + |
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Preference number: 2 (lower is better) Translates to: GTLKRKPFKSFSKGRTPRLGASC*ELGTEF Trigger: GAATTCAGTACCCAGCTCCCAGCAGGAGGCTCCCAG...TCTGGGTGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CCA 90 bp | GTAAGAGGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACAGGAGTTACAGGCAGCTaGGAGCCTCCTGCTGGGAGC | + |
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Preference number: 2 (lower is better) Translates to: VRGTLKRKPFKSFSKGRTGVTGS*EPPAGS Trigger: GCTCCCAGCAGGAGGCTCCCAGCTGCCTGTAACTCC...TGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCCTCTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR GCA 90 bp | TTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGTACAGTATGACCTCAGGCATGGAGGCGGAGTaGCAGGGACCAGGCTACACT | + |
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Preference number: 2 (lower is better) Translates to: LPMLLHRKQAVKEYSMTSGMEAE*QGPGYT Trigger: AGTGTAGCCTGGTCCCTGGCACTCCGCCTCCATGCC...TGAGGTCATACTGTACTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR GCA 90 bp | TGGGCGGGGAAGGAAGCGAGCAGGGTGCCAGTAAAACCTTGCCCAAGACATGGGCAATCCCAAGGCCCTTaGAACCTATATTTAATGAAT | + |
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Preference number: 2 (lower is better) Translates to: WAGKEASRVPVKPCPRHGQSQGP*NLYLMN Trigger: ATTCATTAAATATAGGTTGCAAGGGCCTTGGGATTG...CCCATGTCTTGGGCAAGGTTTTACTGGCACCCTGCTCGCTTCCTTCCCCGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 90 bp | CTAGAGGCTTCTATGTTGTTCCTTTTGACGGGTGGGCTGTCTCAGTaGTTCTCTTGCAAACCCCACACTCAGGAGTGCTTGCCTATTTGC | + |
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Preference number: 2 (lower is better) Translates to: LEASMLFLLTGGLSQ*FSCKPHTQECLPIC Trigger: GCAAATAGGCAAGCACTCCTGAGTGTGGGGTTTGCAAGAGAACAACTGAGACAGCCCACCCGTCAAAAGGAACAACATAGAAGCCTCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR GCA 90 bp | CTGACAAGAAAGACATTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGCAGCTGGGAGCCTCCTaGTGGGAGCTGGGTACTGAA | + |
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Preference number: 2 (lower is better) Translates to: LTRKTLPMLLHRKQAVKEQLGAS*WELGTE Trigger: TTCAGTACCCAGCTCCCAGCAGGAGGCTCCCAGCTG...CTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAATGTCTTTCTTGTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR GCA 90 bp | GTAAGAGGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACATCATGGGCAGGCAACTaGAGGGACCAGAAGGGGCAT | + |
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Preference number: 2 (lower is better) Translates to: VRGTLKRKPFKSFSKGRTSWAGN*RDQKGH Trigger: ATGCCCCTTCTGGTCCCTGCAGTTGCCTGCCCATGA...TGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCCTCTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR TCA 90 bp | TTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGTACAGTATGACCTCATTGGCCTTGAACTCCTaGTCCTCCTGCCTCTACCTC | + |
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Preference number: 2 (lower is better) Translates to: LPMLLHRKQAVKEYSMTSLALNS*SSCLYL Trigger: GAGGTAGAGGCAGGAGGATCAGGAGTTCAAGGCCAA...TGAGGTCATACTGTACTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 90 bp | CAGAAAGCAGGCTGTAAAGGAGTACAGTATGACCTCACGTTTGCTTaGAAAACTACATTTGCATACGCGCACAGAAAGACGCCGAGGATG | + |
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Preference number: 2 (lower is better) Translates to: QKAGCKGVQYDLTFA*KTTFAYAHRKTPRM Trigger: CATCCTCGGCGTCTTTCTGTGCGCGTATGCAAATGTAGTTTTCAAAGCAAACGTGAGGTCATACTGTACTCCTTTACAGCCTGCTTTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CCA 90 bp | CTGACAAGAAAGACATTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGAGAAGGGGCATGAACTaGAGTTACAGGCAGCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: LTRKTLPMLLHRKQAVKERRGMN*SYRQLG Trigger: TCCCAGCTGCCTGTAACTCCAGTTCATGCCCCTTCT...CTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAATGTCTTTCTTGTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CCA 90 bp | GGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACACCCAGAAAACAGGATCTCATGTaGTACAGGCTGGCTTTGAAT | + |
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Preference number: 2 (lower is better) Translates to: GTLKRKPFKSFSKGRTPRKQDLM*YRLALN Trigger: ATTCAAAGCCAGCCTGTACCACATGAGATCCTGTTT...TCTGGGTGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 90 bp | CGATATGTAACCGAGGCCAACCCTGAACTCTTGATCTGCTCCCACTaGCTAAGCACTGACATTATGAGGAATAATGAGGTCTACTTATCT | + |
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Preference number: 2 (lower is better) Translates to: RYVTEANPELLICSH*LSTDIMRNNEVYLS Trigger: AGATAAGTAGACCTCATTATTCCTCATAATGTCAGTGCTTAGCAAGTGGGAGCAGATCAAGAGTTCAGGGTTGGCCTCGGTTACATATCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR TCA 90 bp | TGGGTACTGAATTCGGGTCCTCTGAGAGAGCAGCAAACATTCTTAACTGTGAGATCATGGCTAAAAAGATaGATGCTGCTCTTGTTGAGA | + |
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Preference number: 2 (lower is better) Translates to: WVLNSGPLREQQTFLTVRSWLKR*MLLLLR Trigger: TCTCAACAAGAGCAGCATTCATCTTTTTAGCCATGA...TCTCACAGTTAAGAATGTTTGCTGCTCTCTCAGAGGACCCGAATTCAGTACCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR TCA 90 bp | GGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACACCCAGAATGTGTTTGTTCATTTaGAACAGGATCTCATGTGGT | + |
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Preference number: 2 (lower is better) Translates to: GTLKRKPFKSFSKGRTPRMCLFI*NRISCG Trigger: ACCACATGAGATCCTGTTTCAAATGAACAAACACAT...TCTGGGTGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CCA 90 bp | CTGACAAGAAAGACATTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGACCTTGCCCAAGACATaGGTAAGAGGGACTTTAAAG | + |
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Preference number: 2 (lower is better) Translates to: LTRKTLPMLLHRKQAVKETLPKT*VRGTLK Trigger: CTTTAAAGTCCCTCTTACCCATGTCTTGGGCAAGGT...CTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAATGTCTTTCTTGTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CCA 90 bp | ATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGTACAGTATGACCTCACGTTTGTGCTTGCCTATTTGCTaGAAAACATGGTCTCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: MLLHRKQAVKEYSMTSRLCLPIC*KTWSLL Trigger: AAGGAGAGACCATGTTTTCCAGCAAATAGGCAAGCA...CAAACGTGAGGTCATACTGTACTCCTTTACAGCCTGCTTTCTGTGTAACAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 90 bp | TCTACCTCCCAAAAACTAGGATTACAGATGTGCACCTTATTACATTaGGCTTCTAGAATGAGAAAAGGTGGAGTTTCAACGATTAGCGAG | + |
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Preference number: 2 (lower is better) Translates to: STSQKLGLQMCTLLH*ASRMRKGGVSTISE Trigger: CTCGCTAATCGTTGAAACTCCACCTTTTCTCATTCTAGAAGCCAAATGTAATAAGGTGCACATCTGTAATCCTAGTTTTTGGGAGGTAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CCA 90 bp | TTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGTACAGTATGACCTCAGTTGAAGACTTAAGTTaGCTAATAAGAAAAGGTGAC | + |
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Preference number: 2 (lower is better) Translates to: LPMLLHRKQAVKEYSMTSVEDLS*LIRKGD Trigger: GTCACCTTTTCTTATTAGCCAACTTAAGTCTTCAAC...TGAGGTCATACTGTACTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR TCA 72 bp | ACAGAGACGACTAAGTGGGAGGCATGCTCTGAGGCCTaGCGGAAGCAGGACTGGCCCTCTGCAGGTTCAAGG | + |
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Preference number: 3 (lower is better) Translates to: TETTKWEACSEA*RKQDWPSAGSR Trigger: CCTTGAACCTGCAGAGGGCCAGTCCTGCTTCCGTCAGGCCTCAGAGCATGCCTCCCACTTAGTCGTCTCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR GCA 72 bp | AAGAAGCGAGCCCTGGGTCAAGGCATGGAGGCGGAGTaGCAGGGACCAGGCTACACTGGTAGAGTACTTGCA | + |
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Preference number: 3 (lower is better) Translates to: KKRALGQGMEAE*QGPGYTGRVLA Trigger: TGCAAGTACTCTACCAGTGTAGCCTGGTCCCTGGCACTCCGCCTCCATGCCTTGACCCAGGGCTCGCTTCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CCA 72 bp | TTGTTGAGAGGAAGAAGCGAGCCCTGGGTCAAGGCATaGAGGCGGAGTGCCAGGGACCAGGCTACACTGGTA | + |
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Preference number: 3 (lower is better) Translates to: LLRGRSEPWVKA*RRSARDQATLV Trigger: TACCAGTGTAGCCTGGTCCCTGGCACTCCGCCTCCATGCCTTGACCCAGGGCTCGCTTCTTCCTCTCAACAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CCA 72 bp | GGAGTTACAGGCAGCTGGGAGCCTCCTGCTGGGAGCTaGGTACTGAATTCGGGTCCTCTGAGAGAGCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: GVTGSWEPPAGS*VLNSGPLREQQ Trigger: TTGCTGCTCTCTCAGAGGACCCGAATTCAGTACCCAGCTCCCAGCAGGAGGCTCCCAGCTGCCTGTAACTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CCA 72 bp | ATGAACTGGAGTTACAGGCAGCTGGGAGCCTCCTGCTaGGAGCTGGGTACTGAATTCGGGTCCTCTGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: MNWSYRQLGASC*ELGTEFGSSER Trigger: TCTCTCAGAGGACCCGAATTCAGTACCCAGCTCCCAGCAGGAGGCTCCCAGCTGCCTGTAACTCCAGTTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR GCA 72 bp | ATAGGCCAGCACCACCATGGAACACTAGCAAGAGTGTaGAGGGCTGGGCGTACTGACAAGAAAGACATTACC | + |
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Preference number: 3 (lower is better) Translates to: IGQHHHGTLARV*RAGRTDKKDIT Trigger: GGTAATGTCTTTCTTGTCAGTACGCCCAGCCCTGCACACTCTTGCTAGTGTTCCATGGTGGTGCTGGCCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR GCA 72 bp | GGACTGGCCCTCTGCAGGTTCAAGGGCAAACACCAGTaGTCGTCATTTATATTAGTACCAACAAGTCTGCCA | + |
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Preference number: 3 (lower is better) Translates to: GLALCRFKGKHQ*SSFILVPTSLP Trigger: TGGCAGACTTGTTGGTACTAATATAAATGACGAGCACTGGTGTTTGCCCTTGAACCTGCAGAGGGCCAGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CCA 72 bp | AGCGAGCAGGGTGCCAGTAAAACCTTGCCCAAGACATaGGTAAGAGGGACTTTAAAGAGGAAGCCCTTCAAA | + |
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Preference number: 3 (lower is better) Translates to: SEQGASKTLPKT*VRGTLKRKPFK Trigger: TTTGAAGGGCTTCCTCTTTAAAGTCCCTCTTACCCATGTCTTGGGCAAGGTTTTACTGGCACCCTGCTCGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CAA 90 bp | GCCAACCCTGAACTCTTGATCTGCTCCCACTTGCTAAGCACTGACATTATGAGGACACTGGTAGAGTACTaGCATGTTCTTCCATGTTCC | + |
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Preference number: 3 (lower is better) Translates to: ANPELLICSHLLSTDIMRTLVEY*HVLPCS Trigger: GGAACATGGAAGAACATGCAAGTACTCTACCAGTGT...CCTCATAATGTCAGTGCTTAGCAAGTGGGAGCAGATCAAGAGTTCAGGGTTGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CAA 90 bp | GGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACACCCAGATTGATCTGCTCCCACTaGCTAAGCACTGACATTATG | + |
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Preference number: 3 (lower is better) Translates to: GTLKRKPFKSFSKGRTPRLICSH*LSTDIM Trigger: CATAATGTCAGTGCTTAGCAAGTGGGAGCAGATCAA...TCTGGGTGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CAA 90 bp | GGCGTACTGACAAGAAAGACATTACCTATGCTGTTACACAGAAAGCAGGCTGTACTAGAGGCTTCTATGTaGTTCCTTTTGACGGGTGGG | + |
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Preference number: 3 (lower is better) Translates to: GVLTRKTLPMLLHRKQAVLEASM*FLLTGG Trigger: CCCACCCGTCAAAAGGAACAACATAGAAGCCTCTAG...TACAGCCTGCTTTCTGTGTAACAGCATAGGTAATGTCTTTCTTGTCAGTACGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CAA 90 bp | GGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACACCCAGACATGTGTTTGTTCATTaGAAACAGGATCTCATGTGG | + |
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Preference number: 3 (lower is better) Translates to: GTLKRKPFKSFSKGRTPRHVFVH*KQDLMW Trigger: CCACATGAGATCCTGTTTCAAATGAACAAACACATG...TCTGGGTGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR TCA 72 bp | GCTGTAAAGGAGTACAGTATGACCTCACGTTTGCTTTaGAAACTACATTTGCATACGCGCACAGAAAGACGC | + |
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Preference number: 3 (lower is better) Translates to: AVKEYSMTSRLL*KLHLHTRTERR Trigger: GCGTCTTTCTGTGCGCGTATGCAAATGTAGTTTTCAAAGCAAACGTGAGGTCATACTGTACTCCTTTACAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR TCA 72 bp | ATACAGAGTCCTTTTAAGCTACCAGGTCACTCCAGATaGGAAATGACAGAGCAACTGGAAATCACGTTGAAG | + |
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Preference number: 3 (lower is better) Translates to: IQSPFKLPGHSR*EMTEQLEITLK Trigger: CTTCAACGTGATTTCCAGTTGCTCTGTCATTTCTCATCTGGAGTGACCTGGTAGCTTAAAAGGACTCTGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR-3UTR CAA 90 bp | TTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGTACAGTATGACCTCAACAATCCCAAGGCCCTaGCAACCTATATTTAATGAA | + |
|
Preference number: 3 (lower is better) Translates to: LPMLLHRKQAVKEYSMTSTIPRP*QPIFNE Trigger: TTCATTAAATATAGGTTGCAAGGGCCTTGGGATTGT...TGAGGTCATACTGTACTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR TCA 72 bp | AATGAACTCTCAAATACTTGTATGCTTTATGTTTTATaGGACAGTGTCTCACCTGGCCCAGGCTATGTAGCT | + |
|
Preference number: 3 (lower is better) Translates to: NELSNTCMLYVL*DSVSPGPGYVA Trigger: AGCTACATAGCCTGGGCCAGGTGAGACACTGTCTCATAAAACATAAAGCATACAAGTATTTGAGAGTTCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR GCA 72 bp | CCTGCCTCTACCTCCCAAAAACTAGGATTACAGATGTaGACCTTATTACATTTGGCTTCTAGAATGAGAAAA | + |
|
Preference number: 3 (lower is better) Translates to: PASTSQKLGLQM*TLLHLASRMRK Trigger: TTTTCTCATTCTAGAAGCCAAATGTAATAAGGTGCACATCTGTAATCCTAGTTTTTGGGAGGTAGAGGCAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR GCA 72 bp | GGTCACATACAACGAATGAACTCTCAAATACTTGTATaGTTTATGTTTTATGAGACAGTGTCTCACCTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: GHIQRMNSQILV*FMFYETVSHLA Trigger: GGCCAGGTGAGACACTGTCTCATAAAACATAAAGCATACAAGTATTTGAGAGTTCATTCGTTGTATGTGACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR TCA 72 bp | TACAGATGTGCACCTTATTACATTTGGCTTCTAGAATaGGAAAAGGTGGAGTTTCAACGATTAGCGAGTAAA | + |
|
Preference number: 3 (lower is better) Translates to: YRCAPYYIWLLE*EKVEFQRLASK Trigger: TTTACTCGCTAATCGTTGAAACTCCACCTTTTCTCATTCTAGAAGCCAAATGTAATAAGGTGCACATCTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR GCA 90 bp | AGGCATGCTCTGAGGCCTGACGGAAGCAGGACTGGCCCTCTGCAGGTTCAAGGGCACCATCAGGATTGCTaGCGTCGGCCAGATCTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: RHALRPDGSRTGPLQVQGHHQDC*RRPDLA Trigger: AGCCAGATCTGGCCGACGGCAGCAATCCTGATGGTG...CCCTTGAACCTGCAGAGGGCCAGTCCTGCTTCCGTCAGGCCTCAGAGCATGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 72 bp | GGCGGGGAAGGAAGCGAGCAGGGTGCCAGTAAAACCTaGCCCAAGACATGGGTAAGAGGGACTTTAAAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: GGEGSEQGASKT*PKTWVRGTLKR Trigger: CCTCTTTAAAGTCCCTCTTACCCATGTCTTGGGCAAGGTTTTACTGGCACCCTGCTCGCTTCCTTCCCCGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR CCA 90 bp | CTCGTCATTTATATTAGTACCAACAAGTCTGCCAGCACAGCTGACACACCAGGTCGAGAGCCACAACGCTaGCACAGCACCGCCTTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: LVIYISTNKSASTADTPGREPQR*HSTAFR Trigger: CCGGAAGGCGGTGCTGTGCCAGCGTTGTGGCTCTCG...ACCTGGTGTGTCAGCTGTGCTGGCAGACTTGTTGGTACTAATATAAATGACGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR GCA 90 bp | TGGGCGGGGAAGGAAGCGAGCAGGGTGCCAGTAAAACCTTGCCCAAGACATGGGTCCAATCTCACAGTCTaGACAGACCAGAAACTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: WAGKEASRVPVKPCPRHGSNLTV*TDQKLD Trigger: ATCAAGTTTCTGGTCTGTGCAGACTGTGAGATTGGA...CCCATGTCTTGGGCAAGGTTTTACTGGCACCCTGCTCGCTTCCTTCCCCGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 72 bp | CGGAGTGCCAGGGACCAGGCTACACTGGTAGAGTACTaGCATGTTCTTCCATGTTCCAAAACAGGGGAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: RSARDQATLVEY*HVLPCSKTGER Trigger: CCTTTCCCCTGTTTTGGAACATGGAAGAACATGCAAGTACTCTACCAGTGTAGCCTGGTCCCTGGCACTCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR GCA 90 bp | TGGGTACTGAATTCGGGTCCTCTGAGAGAGCAGCAAACATTCTTAACTGTGAGAAGAGCAGTCCCTGGCTaGAGCACCCGAGAGCCACAA | + |
|
Preference number: 4 (lower is better) Translates to: WVLNSGPLREQQTFLTVRRAVPG*STREPQ Trigger: TTGTGGCTCTCGGGTGCTGCAGCCAGGGACTGCTCT...TCTCACAGTTAAGAATGTTTGCTGCTCTCTCAGAGGACCCGAATTCAGTACCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR CCA 90 bp | GGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACACCCAGAGCCGTCGGCCAGATCTaGCTTCTTTCTCATGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: GTLKRKPFKSFSKGRTPRAVGQI*LLSHGG Trigger: CCCTCCATGAGAAAGAAGCCAGATCTGGCCGACGGC...TCTGGGTGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR CCA 90 bp | GCCAACCCTGAACTCTTGATCTGCTCCCACTTGCTAAGCACTGACATTATGAGGACCAGCCAGTGTTCCTaGAGGAGATCACCATCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: ANPELLICSHLLSTDIMRTSQCS*RRSPSG Trigger: TCCTGATGGTGATCTCCTCCAGGAACACTGGCTGGT...CCTCATAATGTCAGTGCTTAGCAAGTGGGAGCAGATCAAGAGTTCAGGGTTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR CCA 90 bp | GCATGTTCTTCCATGTTCCAAAACAGGGGAAAGGGCTTTAGGACAAGGTGCGACGGCAATGCCAGCCAATaGGTCCAATCTCACAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: ACSSMFQNRGKGFRTRCDGNASQ*VQSHSL Trigger: CAGACTGTGAGATTGGACCCATTGGCTGGCATTGCC...GTCGCACCTTGTCCTAAAGCCCTTTCCCCTGTTTTGGAACATGGAAGAACATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR CCA 90 bp | TTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGTACAGTATGACCTCAGAAAAGAGCAGTCCCTaGCTGCAGCACCCGAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: LPMLLHRKQAVKEYSMTSEKSSP*LQHPRA Trigger: GGCTCTCGGGTGCTGCAGCCAGGGACTGCTCTTTTC...TGAGGTCATACTGTACTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 72 bp | TCTATGTTGTTCCTTTTGACGGGTGGGCTGTCTCAGTaGTTCTCTTGCAAACCCCACACTCAGGAGTGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: SMLFLLTGGLSQ*FSCKPHTQECL Trigger: CAAGCACTCCTGAGTGTGGGGTTTGCAAGAGAACAACTGAGACAGCCCACCCGTCAAAAGGAACAACATAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR TCA 90 bp | CTCGTCATTTATATTAGTACCAACAAGTCTGCCAGCACAGCTGACACACCAGGTCACAGACCAGAAACTTaGTGTTGCCCACGTCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LVIYISTNKSASTADTPGHRPET*CCPRPW Trigger: CCAAGGACGTGGGCAACATCAAGTTTCTGGTCTGTG...ACCTGGTGTGTCAGCTGTGCTGGCAGACTTGTTGGTACTAATATAAATGACGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 72 bp | ACCGAGGCCAACCCTGAACTCTTGATCTGCTCCCACTaGCTAAGCACTGACATTATGAGGAATAATGAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: TEANPELLICSH*LSTDIMRNNEV Trigger: GACCTCATTATTCCTCATAATGTCAGTGCTTAGCAAGTGGGAGCAGATCAAGAGTTCAGGGTTGGCCTCGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 72 bp | CTCTTGCAAACCCCACACTCAGGAGTGCTTGCCTATTaGCTGGAAAACATGGTCTCTCCTTTGCGCTTAGAA | + |
|
Preference number: 4 (lower is better) Translates to: LLQTPHSGVLAY*LENMVSPLRLE Trigger: TTCTAAGCGCAAAGGAGAGACCATGTTTTCCAGCAAATAGGCAAGCACTCCTGAGTGTGGGGTTTGCAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| 3UTR CAA 72 bp | CAGTTGTTCTCTTGCAAACCCCACACTCAGGAGTGCTaGCCTATTTGCTGGAAAACATGGTCTCTCCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: QLFSCKPHTQEC*PICWKTWSLLC Trigger: GCAAAGGAGAGACCATGTTTTCCAGCAAATAGGCAAGCACTCCTGAGTGTGGGGTTTGCAAGAGAACAACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR CCA 90 bp | CTGACAAGAAAGACATTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGCTGGCTTCTTTCTCATaGAGGGGAGGAAGAGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: LTRKTLPMLLHRKQAVKELASFS*RGGRAA Trigger: GGCAGCTCTTCCTCCCCTCCATGAGAAAGAAGCCAG...CTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAATGTCTTTCTTGTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR GCA 90 bp | CTGACAAGAAAGACATTACCTATGCTGTTACACAGAAAGCAGGCTGTAAAGGAGTTGTCATCTAGGCAATaGCAGCCAATGGGTCCAATC | + |
|
Preference number: 4 (lower is better) Translates to: LTRKTLPMLLHRKQAVKELSSRQ*QPMGPI Trigger: GATTGGACCCATTGGCTGGCATTGCCTAGATGACAA...CTCCTTTACAGCCTGCTTTCTGTGTAACAGCATAGGTAATGTCTTTCTTGTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS GCA 90 bp | GAGGGGAGGAAGAGCTGCCGGCGAGAGAAAAGAGCAGTCCCTGGCTaGAGCACCCGAGAGCCACAACGCTGGCACAGCACCGCCTTCCGG | + |
|
Preference number: 5 (lower is better) Translates to: EGRKSCRREKRAVPG*STREPQRWHSTAFR Trigger: CCGGAAGGCGGTGCTGTGCCAGCGTTGTGGCTCTCGGGTGCTGCAGCCAGGGACTGCTCTTTTCTCTCGCCGGCAGCTCTTCCTCCCCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CCA 90 bp | GAGAAAAGAGCAGTCCCTGGCTGCAGCACCCGAGAGCCACAACGCTaGCACAGCACCGCCTTCCGGTTCCGGCCCTCGGCTGACACGAGC | + |
|
Preference number: 5 (lower is better) Translates to: EKRAVPGCSTREPQR*HSTAFRFRPSADTS Trigger: GCTCGTGTCAGCCGAGGGCCGGAACCGGAAGGCGGTGCTGTGCCAGCGTTGTGGCTCTCGGGTGCTGCAGCCAGGGACTGCTCTTTTCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CCA 90 bp | CATGGAGGGGAGGAAGAGCTGCCGGCGAGAGAAAAGAGCAGTCCCTaGCTGCAGCACCCGAGAGCCACAACGCTGGCACAGCACCGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: HGGEEELPAREKSSP*LQHPRATTLAQHRL Trigger: AAGGCGGTGCTGTGCCAGCGTTGTGGCTCTCGGGTGCTGCAGCCAGGGACTGCTCTTTTCTCTCGCCGGCAGCTCTTCCTCCCCTCCATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR CAA 90 bp | AGGCATGCTCTGAGGCCTGACGGAAGCAGGACTGGCCCTCTGCAGGTTCAAGGGATGTTGCCCACGTCCTaGGTGAAGCCCACATTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: RHALRPDGSRTGPLQVQGMLPTS*VKPTFS Trigger: TGAGAATGTGGGCTTCACCAAGGACGTGGGCAACAT...CCCTTGAACCTGCAGAGGGCCAGTCCTGCTTCCGTCAGGCCTCAGAGCATGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CCA 90 bp | TTCCTGGAGGAGATCACCATCAGGATTGCTGCCGTCGGCCAGATCTaGCTTCTTTCTCATGGAGGGGAGGAAGAGCTGCCGGCGAGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: FLEEITIRIAAVGQI*LLSHGGEEELPARE Trigger: TTCTCTCGCCGGCAGCTCTTCCTCCCCTCCATGAGAAAGAAGCCAGATCTGGCCGACGGCAGCAATCCTGATGGTGATCTCCTCCAGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CCA 90 bp | CCCACATTCTCAAAGGTGAACATGTCATTAACCAGCCAGTGTTCCTaGAGGAGATCACCATCAGGATTGCTGCCGTCGGCCAGATCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: PTFSKVNMSLTSQCS*RRSPSGLLPSARSG Trigger: GCCAGATCTGGCCGACGGCAGCAATCCTGATGGTGATCTCCTCCAGGAACACTGGCTGGTTAATGACATGTTCACCTTTGAGAATGTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR CAA 90 bp | GCATGTTCTTCCATGTTCCAAAACAGGGGAAAGGGCTTTAGGACAAGGTGCGACGCACAGACCAGAAACTaGATGTTGCCCACGTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: ACSSMFQNRGKGFRTRCDAQTRN*MLPTSL Trigger: CAAGGACGTGGGCAACATCAAGTTTCTGGTCTGTGC...GTCGCACCTTGTCCTAAAGCCCTTTCCCCTGTTTTGGAACATGGAAGAACATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS-3UTR CAA 90 bp | GTAAGAGGGACTTTAAAGAGGAAGCCCTTCAAAAGCTTCAGCAAGGGAAGAACAACCAGAAACTTGATGTaGCCCACGTCCTTGGTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VRGTLKRKPFKSFSKGRTTRNLM*PTSLVK Trigger: CTTCACCAAGGACGTGGGCAACATCAAGTTTCTGGT...TGTTCTTCCCTTGCTGAAGCTTTTGAAGGGCTTCCTCTTTAAAGTCCCTCTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CCA 72 bp | GCAGTCCCTGGCTGCAGCACCCGAGAGCCACAACGCTaGCACAGCACCGCCTTCCGGTTCCGGCCCTCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: AVPGCSTREPQR*HSTAFRFRPSA Trigger: AGCCGAGGGCCGGAACCGGAAGGCGGTGCTGTGCCAGCGTTGTGGCTCTCGGGTGCTGCAGCCAGGGACTGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS GCA 72 bp | AAGAGCTGCCGGCGAGAGAAAAGAGCAGTCCCTGGCTaGAGCACCCGAGAGCCACAACGCTGGCACAGCACC | + |
|
Preference number: 6 (lower is better) Translates to: KSCRREKRAVPG*STREPQRWHST Trigger: GGTGCTGTGCCAGCGTTGTGGCTCTCGGGTGCTGCAGCCAGGGACTGCTCTTTTCTCTCGCCGGCAGCTCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CCA 72 bp | GAGGAAGAGCTGCCGGCGAGAGAAAAGAGCAGTCCCTaGCTGCAGCACCCGAGAGCCACAACGCTGGCACAG | + |
|
Preference number: 6 (lower is better) Translates to: EEELPAREKSSP*LQHPRATTLAQ Trigger: CTGTGCCAGCGTTGTGGCTCTCGGGTGCTGCAGCCAGGGACTGCTCTTTTCTCTCGCCGGCAGCTCTTCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS GCA 72 bp | CCAGCCAGTGTTCCTGGAGGAGATCACCATCAGGATTaGTGCCGTCGGCCAGATCTGGCTTCTTTCTCATGG | + |
|
Preference number: 6 (lower is better) Translates to: PASVPGGDHHQD*CRRPDLASFSW Trigger: CCATGAGAAAGAAGCCAGATCTGGCCGACGGCAGCAATCCTGATGGTGATCTCCTCCAGGAACACTGGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CAA 72 bp | ACCAGCCAGTGTTCCTGGAGGAGATCACCATCAGGATaGCTGCCGTCGGCCAGATCTGGCTTCTTTCTCATG | + |
|
Preference number: 6 (lower is better) Translates to: TSQCSWRRSPSG*LPSARSGFFLM Trigger: CATGAGAAAGAAGCCAGATCTGGCCGACGGCAGCAATCCTGATGGTGATCTCCTCCAGGAACACTGGCTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CCA 72 bp | TCAAAGGTGAACATGTCATTAACCAGCCAGTGTTCCTaGAGGAGATCACCATCAGGATTGCTGCCGTCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: SKVNMSLTSQCS*RRSPSGLLPSA Trigger: GGCCGACGGCAGCAATCCTGATGGTGATCTCCTCCAGGAACACTGGCTGGTTAATGACATGTTCACCTTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CAA 90 bp | TGCCAGCCAATGGGTCCAATCTCACAGTCTGCACAGACCAGAAACTaGATGTTGCCCACGTCCTTGGTGAAGCCCACATTCTCAAAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: CQPMGPISQSAQTRN*MLPTSLVKPTFSKV Trigger: CACCTTTGAGAATGTGGGCTTCACCAAGGACGTGGGCAACATCAAGTTTCTGGTCTGTGCAGACTGTGAGATTGGACCCATTGGCTGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CAA 72 bp | ATGGGTCCAATCTCACAGTCTGCACAGACCAGAAACTaGATGTTGCCCACGTCCTTGGTGAAGCCCACATTC | + |
|
Preference number: 6 (lower is better) Translates to: MGPISQSAQTRN*MLPTSLVKPTF Trigger: GAATGTGGGCTTCACCAAGGACGTGGGCAACATCAAGTTTCTGGTCTGTGCAGACTGTGAGATTGGACCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CAA 90 bp | CCAATGGGTCCAATCTCACAGTCTGCACAGACCAGAAACTTGATGTaGCCCACGTCCTTGGTGAAGCCCACATTCTCAAAGGTGAACATG | + |
|
Preference number: 6 (lower is better) Translates to: PMGPISQSAQTRNLM*PTSLVKPTFSKVNM Trigger: CATGTTCACCTTTGAGAATGTGGGCTTCACCAAGGACGTGGGCAACATCAAGTTTCTGGTCTGTGCAGACTGTGAGATTGGACCCATTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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| CDS CAA 90 bp | ATCTCACAGTCTGCACAGACCAGAAACTTGATGTTGCCCACGTCCTaGGTGAAGCCCACATTCTCAAAGGTGAACATGTCATTAACCAGC | + |
|
Preference number: 6 (lower is better) Translates to: ISQSAQTRNLMLPTS*VKPTFSKVNMSLTS Trigger: GCTGGTTAATGACATGTTCACCTTTGAGAATGTGGGCTTCACCAAGGACGTGGGCAACATCAAGTTTCTGGTCTGTGCAGACTGTGAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047978.9 |
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