Pregenerated sensors for RABGEF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025340Ensembl transcript IDs: ENSMUST00000026390.8, ENSMUST00000119027.8, ENSMUST00000119797.8, ENSMUST00000143865.2, ENSMUST00000148264.8
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACTCTGGCTCCCAGCAGAGCTGTCCCAAGTGAGTGTCACCATGCCCAGCTTTTCTCCGGACCTGAACAGTaGAACGCAGCAGCTCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: TLAPSRAVPSECHHAQLFSGPEQ*NAAAPR Trigger: TCTGGGAGCTGCTGCGTTCCACTGTTCAGGTCCGGA...GAAAAGCTGGGCATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGCCCCAGGAACTCTGGCTCCCAGCAGAGCTGTCCCAAGTGAGTGTCACCATAAAAACATCAGCTCATaGAATGCCATGCACGCTGAG | + |
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Preference number: 2 (lower is better) Translates to: PAPGTLAPSRAVPSECHHKNISS*NAMHAE Trigger: CTCAGCGTGCATGGCATTTCATGAGCTGATGTTTTT...ATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAGAGTTCCTGGGGCAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR-3UTR TCA 90 bp | CATCTTGATTTGTTTGCTTACACGAGGTGTCTCATTGACAGCGATGCCCCCTGCGAGCACTTTACTGACTaGGCCACCACCCCAGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: HLDLFAYTRCLIDSDAPCEHFTD*ATTPGS Trigger: GGACCCTGGGGTGGTGGCTCAGTCAGTAAAGTGCTC...GCAGGGGGCATCGCTGTCAATGAGACACCTCGTGTAAGCAAACAAATCAAGATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR-3UTR CCA 90 bp | CATCTTGATTTGTTTGCTTACACGAGGTGTCTCATTGACAGCGATGCCCCCTGCTCCGGACCTGAACAGTaGAACGCAGCAGCTCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: HLDLFAYTRCLIDSDAPCSGPEQ*NAAAPR Trigger: TCTGGGAGCTGCTGCGTTCCACTGTTCAGGTCCGGA...GCAGGGGGCATCGCTGTCAATGAGACACCTCGTGTAAGCAAACAAATCAAGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR CAA 90 bp | GGCCAGAGGGCATCCTTGGCTATCATTTCTCAGGAGCCGTCCATCTaGATTTGTTTGCTTACACGAGGTGTCTCATTGACAGCGATGCCC | + |
|
Preference number: 2 (lower is better) Translates to: GQRASLAIISQEPSI*ICLLTRGVSLTAMP Trigger: GGGCATCGCTGTCAATGAGACACCTCGTGTAAGCAAACAAATCAAGATGGACGGCTCCTGAGAAATGATAGCCAAGGATGCCCTCTGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR-3UTR CCA 90 bp | GAGAGCACTTTACTGACTGAGCCACCACCCCAGGGTCCCAGAATAATTCTGTATCACACTGGGGGAGTGTaGGAACATAGAATTCATTTC | + |
|
Preference number: 2 (lower is better) Translates to: ESTLLTEPPPQGPRIILYHTGGV*EHRIHF Trigger: GAAATGAATTCTATGTTCCCACACTCCCCCAGTGTG...ATACAGAATTATTCTGGGACCCTGGGGTGGTGGCTCAGTCAGTAAAGTGCTCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR-3UTR CCA 90 bp | TACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAGTTAGTGCCATTTTCACCTGAACAGTaGAACGCAGCAGCTCCCAGA | + |
|
Preference number: 2 (lower is better) Translates to: YNFFTCTRKNLKLGQLVPFSPEQ*NAAAPR Trigger: TCTGGGAGCTGCTGCGTTCCACTGTTCAGGTGAAAA...TGGCACTAACTGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143865.2 |
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| 3UTR-3UTR TCA 90 bp | AGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAGAATTTCATTTTCACCTaGACAGTGGAACGCAGCAGC | + |
|
Preference number: 2 (lower is better) Translates to: SWRYNFFTCTRKNLKLGQNFIFT*TVERSS Trigger: GCTGCTGCGTTCCACTGTTCAGGTGAAAATGAAATT...CTGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143865.2 |
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| 3UTR-3UTR GCA 90 bp | ATCATTTCTCAGGAGCCGTCCATCTTGATTTGTTTGCTTACACGAGGTGTCTCATTAAAAGGCAGTGTTTaGCCAAAACCAACAACAGTG | + |
|
Preference number: 2 (lower is better) Translates to: IISQEPSILICLLTRGVSLKGSV*PKPTTV Trigger: CACTGTTGTTGGTTTTGGGCAAACACTGCCTTTTAA...TGAGACACCTCGTGTAAGCAAACAAATCAAGATGGACGGCTCCTGAGAAATGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR TCA 72 bp | CCCAGGAACTCTGGCTCCCAGCAGAGCTGTCCCAAGTaGGTGTCACCATGCCCAGCTTTTCACCCGGGGCCG | + |
|
Preference number: 3 (lower is better) Translates to: PRNSGSQQSCPK*VSPCPAFHPGP Trigger: CGGCCCCGGGTGAAAAGCTGGGCATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAGAGTTCCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR CCA 72 bp | GCTACACATGTATGTAGAGGTACACAGGCACATATGTaGCCATGTGGAGGCCAGAGGGCATCCTTGGCTATC | + |
|
Preference number: 3 (lower is better) Translates to: ATHVCRGTQAHM*PCGGQRASLAI Trigger: GATAGCCAAGGATGCCCTCTGGCCTCCACATGGCCACATATGTGCCTGTGTACCTCTACATACATGTGTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR TCA 72 bp | TTTGAAACTTTAAGCAGTCAGTTCATATTCCGGACCTaGACAGTGGAACGCAGCAGCTCCCAGAAACCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: FETLSSQFIFRT*TVERSSSQKPA Trigger: GGCTGGTTTCTGGGAGCTGCTGCGTTCCACTGTTCAGGTCCGGAATATGAACTGACTGCTTAAAGTTTCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR-3UTR CAA 90 bp | GCTACACATGTATGTAGAGGTACACAGGCACATATGTGGCCATGTGGAGGCCAGTTTAAAAGGCAGTGTTaGCCCAAAACCAACAACAGT | + |
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Preference number: 3 (lower is better) Translates to: ATHVCRGTQAHMWPCGGQFKRQC*PKTNNS Trigger: ACTGTTGTTGGTTTTGGGCAAACACTGCCTTTTAAA...CTGGCCTCCACATGGCCACATATGTGCCTGTGTACCTCTACATACATGTGTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR TCA 72 bp | AATAACCAATCCCTAAATCTGTACCTAAAAACACTTTaGAACTTTAAGCAGTCAGTTCATATTCCGGACCTG | + |
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Preference number: 3 (lower is better) Translates to: NNQSLNLYLKTL*NFKQSVHIPDL Trigger: CAGGTCCGGAATATGAACTGACTGCTTAAAGTTTCAAAGTGTTTTTAGGTACAGATTTAGGGATTGGTTATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | GGCCGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTCACCCTGCGTACACCTaGGGCTGCAGAGGGGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: GRTGSSGPHISMESTLLTHPAYT*GCRGGG Trigger: CCCTCCCCCTCTGCAGCCTCAGGTGTACGCAGGGTG...AGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 ENSMUST00000143865.2 |
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| CDS-3UTR CCA 90 bp | CCTGCCCCAGGAACTCTGGCTCCCAGCAGAGCTGTCCCAAGTGAGTGTCACCATTTCCTGGGGGATGTCTaGCCAGACATGTACCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: PAPGTLAPSRAVPSECHHFLGDV*PDMYRS Trigger: TGACCGGTACATGTCTGGCCAGACATCCCCCAGGAA...ATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAGAGTTCCTGGGGCAGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | CTGGCTCCCAGCAGAGCTGTCCCAAGTGAGTGTCACCATGCCCAGCTTTTCACCCTCTGGAAGAGGCGCTaGAGAACTTCTTCACTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: LAPSRAVPSECHHAQLFTLWKRR*RTSSLW Trigger: CCACAGTGAAGAAGTTCTTCAGCGCCTCTTCCAGAG...GGTGAAAAGCTGGGCATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR GCA 90 bp | CCTGCCCCAGGAACTCTGGCTCCCAGCAGAGCTGTCCCAAGTGAGTGTCACCATATGGCATTGAAGATGTaGTTGCTGCACCTGGTGATG | + |
|
Preference number: 4 (lower is better) Translates to: PAPGTLAPSRAVPSECHHMALKM*LLHLVM Trigger: CATCACCAGGTGCAGCAAGCACATCTTCAATGCCAT...ATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAGAGTTCCTGGGGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | ACTCTGGCTCCCAGCAGAGCTGTCCCAAGTGAGTGTCACCATGCCCAGCTTTTCGTCATCGGCAGAGGCTaGCTCATTCTTGGTGATCTT | + |
|
Preference number: 4 (lower is better) Translates to: TLAPSRAVPSECHHAQLFVIGRG*LILGDL Trigger: AAGATCACCAAGAATGAGCCAGCCTCTGCCGATGAC...GAAAAGCTGGGCATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | ACTCTGGCTCCCAGCAGAGCTGTCCCAAGTGAGTGTCACCATGCCCAGCTTTTCCATTCTCAGAGTCGATaGCTGCTAAGGGTTGGTTCG | + |
|
Preference number: 4 (lower is better) Translates to: TLAPSRAVPSECHHAQLFHSQSR*LLRVGS Trigger: CGAACCAACCCTTAGCAGCCATCGACTCTGAGAATG...GAAAAGCTGGGCATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | TCATATTCCGGACCTGAACAGTGGAACGCAGCAGCTCCCAGAAACCAGCCCCAATGCCGTTCATTCAACTaGGACAGGAGGTCCAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SYSGPEQWNAAAPRNQPQCRSFN*DRRSKF Trigger: GAACTTGGACCTCCTGTCTCAGTTGAATGAACGGCA...TTGGGGCTGGTTTCTGGGAGCTGCTGCGTTCCACTGTTCAGGTCCGGAATATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | AGTTTATTGGATAAACAGGGAAAGGAAGCTGCAAGCACAGTTCCAAGTCAACTGCACCCTGCGTACACCTaGGGCTGCAGAGGGGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLLDKQGKEAASTVPSQLHPAYT*GCRGGG Trigger: CCCTCCCCCTCTGCAGCCTCAGGTGTACGCAGGGTG...CAGTTGACTTGGAACTGTGCTTGCAGCTTCCTTTCCCTGTTTATCCAATAAACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | TCATATTCCGGACCTGAACAGTGGAACGCAGCAGCTCCCAGAAACCAGCCCCAAGGTTTATGGAGGGACTaGGAGCTTTGGCTTCCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: SYSGPEQWNAAAPRNQPQGLWRD*ELWLPE Trigger: TTCAGGAAGCCAAAGCTCCCAGTCCCTCCATAAACC...TTGGGGCTGGTTTCTGGGAGCTGCTGCGTTCCACTGTTCAGGTCCGGAATATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | GGCCGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTCATTCTCAGAGTCGATaGCTGCTAAGGGTTGGTTCG | + |
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Preference number: 4 (lower is better) Translates to: GRTGSSGPHISMESTLLTHSQSR*LLRVGS Trigger: CGAACCAACCCTTAGCAGCCATCGACTCTGAGAATG...AGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR CAA 72 bp | TCCATCTTGATTTGTTTGCTTACACGAGGTGTCTCATaGACAGCGATGCCCCCTGCCCCAGGAACTCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SILICLLTRGVS*TAMPPAPGTLA Trigger: AGCCAGAGTTCCTGGGGCAGGGGGCATCGCTGTCAATGAGACACCTCGTGTAAGCAAACAAATCAAGATGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | CGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTGAGTGCCGTTCATTCAACTaGGACAGGAGGTCCAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: RTGSSGPHISMESTLLTECRSFN*DRRSKF Trigger: GAACTTGGACCTCCTGTCTCAGTTGAATGAACGGCA...CTCAGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | TCATATTCCGGACCTGAACAGTGGAACGCAGCAGCTCCCAGAAACCAGCCCCAACCTGAATTTCCTTCTTaGATCCAGCTCTGGAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: SYSGPEQWNAAAPRNQPQPEFPS*IQLWKR Trigger: CCTCTTCCAGAGCTGGATCCAAGAAGGAAATTCAGG...TTGGGGCTGGTTTCTGGGAGCTGCTGCGTTCCACTGTTCAGGTCCGGAATATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | CGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTGAGGGAGCTTTGGCTTCCTaGATTTCCTTCTTGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: RTGSSGPHISMESTLLTEGALAS*ISFLDP Trigger: TGGATCCAAGAAGGAAATTCAGGAAGCCAAAGCTCC...CTCAGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | CAGTCAGTTCATATTCCGGACCTGAACAGTGGAACGCAGCAGCTCCCAGAAACCGGAGCTTTGGCTTCCTaGATTTCCTTCTTGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: QSVHIPDLNSGTQQLPETGALAS*ISFLDP Trigger: TGGATCCAAGAAGGAAATTCAGGAAGCCAAAGCTCC...GGTTTCTGGGAGCTGCTGCGTTCCACTGTTCAGGTCCGGAATATGAACTGACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | GCTACACATGTATGTAGAGGTACACAGGCACATATGTGGCCATGTGGAGGCCAGGGTTGCAGAAGCGAGTaGTGTACTGGATGTTGGACT | + |
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Preference number: 4 (lower is better) Translates to: ATHVCRGTQAHMWPCGGQGCRSE*CTGCWT Trigger: AGTCCAACATCCAGTACATCACTCGCTTCTGCAACC...CTGGCCTCCACATGGCCACATATGTGCCTGTGTACCTCTACATACATGTGTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | GCGACACAGAATTCACACAAACCTACTCCACCAGCTCAAATAAATAGTACATTACACCCTGCGTACACCTaGGGCTGCAGAGGGGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: ATQNSHKPTPPAQINSTLHPAYT*GCRGGG Trigger: CCCTCCCCCTCTGCAGCCTCAGGTGTACGCAGGGTG...TAATGTACTATTTATTTGAGCTGGTGGAGTAGGTTTGTGTGAATTCTGTGTCGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR GCA 90 bp | ACCACCCCAGGGTCCCAGAATAATTCTGTATGTGACCTAAAAGTTGGCGTTACACAACTCTCAGACTCCTaGTTCCTGGGGGATGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: TTPGSQNNSVCDLKVGVTQLSDS*FLGDVW Trigger: CCAGACATCCCCCAGGAAGCAGGAGTCTGAGAGTTG...TGTAACGCCAACTTTTAGGTCACATACAGAATTATTCTGGGACCCTGGGGTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | TGTGGGGGAAGTTTATTGGATAAACAGGGAAAGGAAGCTGCAAGCACAGTTCCATTCCTGGGGGATGTCTaGCCAGACATGTACCGGTCA | + |
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Preference number: 4 (lower is better) Translates to: CGGSLLDKQGKEAASTVPFLGDV*PDMYRS Trigger: TGACCGGTACATGTCTGGCCAGACATCCCCCAGGAA...TGGAACTGTGCTTGCAGCTTCCTTTCCCTGTTTATCCAATAAACTTCCCCCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | TCATATTCCGGACCTGAACAGTGGAACGCAGCAGCTCCCAGAAACCAGCCCCAAGGGCTTAATCTCCAGTaGGTATTTCTCAACAATGTC | + |
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Preference number: 4 (lower is better) Translates to: SYSGPEQWNAAAPRNQPQGLNLQ*VFLNNV Trigger: GACATTGTTGAGAAATACCCACTGGAGATTAAGCCC...TTGGGGCTGGTTTCTGGGAGCTGCTGCGTTCCACTGTTCAGGTCCGGAATATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | GAGAGCACTTTACTGACTGAGCCACCACCCCAGGGTCCCAGAATAATTCTGTATCCTGAATTTCCTTCTTaGATCCAGCTCTGGAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: ESTLLTEPPPQGPRIILYPEFPS*IQLWKR Trigger: CCTCTTCCAGAGCTGGATCCAAGAAGGAAATTCAGG...ATACAGAATTATTCTGGGACCCTGGGGTGGTGGCTCAGTCAGTAAAGTGCTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | ACCACCCCAGGGTCCCAGAATAATTCTGTATGTGACCTAAAAGTTGGCGTTACAGTCATCGGCAGAGGCTaGCTCATTCTTGGTGATCTT | + |
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Preference number: 4 (lower is better) Translates to: TTPGSQNNSVCDLKVGVTVIGRG*LILGDL Trigger: AAGATCACCAAGAATGAGCCAGCCTCTGCCGATGAC...TGTAACGCCAACTTTTAGGTCACATACAGAATTATTCTGGGACCCTGGGGTGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | TACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAGTTAGTGCCACAGACTCCTGCTTCCTaGGGGATGTCTGGCCAGACA | + |
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Preference number: 4 (lower is better) Translates to: YNFFTCTRKNLKLGQLVPQTPAS*GMSGQT Trigger: TGTCTGGCCAGACATCCCCCAGGAAGCAGGAGTCTG...TGGCACTAACTGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | AAGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCACAGACTCCTGCTTCCTaGGGGATGTCTGGCCAGACA | + |
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Preference number: 4 (lower is better) Translates to: KLALQLLHMYQKESQVRAQTPAS*GMSGQT Trigger: TGTCTGGCCAGACATCCCCCAGGAAGCAGGAGTCTG...TGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | AGTTTATTGGATAAACAGGGAAAGGAAGCTGCAAGCACAGTTCCAAGTCAACTGCCGAGGCACACGCTTTaGGTCCATCTCAATGATGTC | + |
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Preference number: 4 (lower is better) Translates to: SLLDKQGKEAASTVPSQLPRHTL*VHLNDV Trigger: GACATCATTGAGATGGACTCAAAGCGTGTGCCTCGG...CAGTTGACTTGGAACTGTGCTTGCAGCTTCCTTTCCCTGTTTATCCAATAAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | CATCTTGATTTGTTTGCTTACACGAGGTGTCTCATTGACAGCGATGCCCCCTGCCGGTCAAAATCCTCCTaGCTTAAATTCAAAGACTGG | + |
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Preference number: 4 (lower is better) Translates to: HLDLFAYTRCLIDSDAPCRSKSS*LKFKDW Trigger: CCAGTCTTTGAATTTAAGTCAGGAGGATTTTGACCG...GCAGGGGGCATCGCTGTCAATGAGACACCTCGTGTAAGCAAACAAATCAAGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR GCA 90 bp | GCTACACATGTATGTAGAGGTACACAGGCACATATGTGGCCATGTGGAGGCCAGAAGTTCTTATACATTTaGTTCACACCTAAGCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: ATHVCRGTQAHMWPCGGQKFLYI*FTPKQA Trigger: GGCCTGCTTAGGTGTGAAGCAAATGTATAAGAACTT...CTGGCCTCCACATGGCCACATATGTGCCTGTGTACCTCTACATACATGTGTAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | AGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAGCTTCTCCACTTTCTCTaGAGGCACTTTCCCACGGGT | + |
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Preference number: 4 (lower is better) Translates to: SWRYNFFTCTRKNLKLGQLLHFL*RHFPTG Trigger: ACCCGTGGGAAAGTGCCTCCAGAGAAAGTGGAGAAG...CTGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | GGCCGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTCTTAAATTCAAAGACTaGGCGTCTAATTTCTCAATG | + |
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Preference number: 4 (lower is better) Translates to: GRTGSSGPHISMESTLLTLKFKD*ASNFSM Trigger: CATTGAGAAATTAGACGCCCAGTCTTTGAATTTAAG...AGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCGGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | GAGAGCACTTTACTGACTGAGCCACCACCCCAGGGTCCCAGAATAATTCTGTATGGGCTTAATCTCCAGTaGGTATTTCTCAACAATGTC | + |
|
Preference number: 4 (lower is better) Translates to: ESTLLTEPPPQGPRIILYGLNLQ*VFLNNV Trigger: GACATTGTTGAGAAATACCCACTGGAGATTAAGCCC...ATACAGAATTATTCTGGGACCCTGGGGTGGTGGCTCAGTCAGTAAAGTGCTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | AAGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCACCGAGGCACACGCTTTaGGTCCATCTCAATGATGTC | + |
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Preference number: 4 (lower is better) Translates to: KLALQLLHMYQKESQVRAPRHTL*VHLNDV Trigger: GACATCATTGAGATGGACTCAAAGCGTGTGCCTCGG...TGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | AGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAGGGTTGCAGAAGCGAGTaGTGTACTGGATGTTGGACT | + |
|
Preference number: 4 (lower is better) Translates to: SWRYNFFTCTRKNLKLGQGCRSE*CTGCWT Trigger: AGTCCAACATCCAGTACATCACTCGCTTCTGCAACC...CTGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| 3UTR CAA 72 bp | GCATCCTTGGCTATCATTTCTCAGGAGCCGTCCATCTaGATTTGTTTGCTTACACGAGGTGTCTCATTGACA | + |
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Preference number: 4 (lower is better) Translates to: ASLAIISQEPSI*ICLLTRGVSLT Trigger: TGTCAATGAGACACCTCGTGTAAGCAAACAAATCAAGATGGACGGCTCCTGAGAAATGATAGCCAAGGATGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | GCGACACAGAATTCACACAAACCTACTCCACCAGCTCAAATAAATAGTACATTACTCTGGAAGAGGCGCTaGAGAACTTCTTCACTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: ATQNSHKPTPPAQINSTLLWKRR*RTSSLW Trigger: CCACAGTGAAGAAGTTCTTCAGCGCCTCTTCCAGAG...TAATGTACTATTTATTTGAGCTGGTGGAGTAGGTTTGTGTGAATTCTGTGTCGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | AAGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCACAGGGATTTCCTCATTaGCAGGGACACAGAGCATCT | + |
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Preference number: 4 (lower is better) Translates to: KLALQLLHMYQKESQVRAQGFPH*QGHRAS Trigger: AGATGCTCTGTGTCCCTGTCAATGAGGAAATCCCTG...TGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | CAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAGTTAGTGCCAATGGTTTATGGAGGGACTaGGAGCTTTGGCTTCCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: QLLHMYQKESQVRAVSANGLWRD*ELWLPE Trigger: TTCAGGAAGCCAAAGCTCCCAGTCCCTCCATAAACC...ATTGGCACTAACTGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | AGTTTATTGGATAAACAGGGAAAGGAAGCTGCAAGCACAGTTCCAAGTCAACTGTTCTCAACAATGTCTTaGACTTCCTTGGCAATCCCG | + |
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Preference number: 4 (lower is better) Translates to: SLLDKQGKEAASTVPSQLFSTMS*TSLAIP Trigger: CGGGATTGCCAAGGAAGTTCAAGACATTGTTGAGAA...CAGTTGACTTGGAACTGTGCTTGCAGCTTCCTTTCCCTGTTTATCCAATAAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR GCA 90 bp | CATCTTGATTTGTTTGCTTACACGAGGTGTCTCATTGACAGCGATGCCCCCTGCCCTTTTATAAGGCATTaGTTCCAAAAACATCTTCGT | + |
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Preference number: 4 (lower is better) Translates to: HLDLFAYTRCLIDSDAPCPFIRH*FQKHLR Trigger: ACGAAGATGTTTTTGGAAGCAATGCCTTATAAAAGG...GCAGGGGGCATCGCTGTCAATGAGACACCTCGTGTAAGCAAACAAATCAAGATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR GCA 90 bp | AAGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAATGGCATTGAAGATGTaGTTGCTGCACCTGGTGATG | + |
|
Preference number: 4 (lower is better) Translates to: KLALQLLHMYQKESQVRAMALKM*LLHLVM Trigger: CATCACCAGGTGCAGCAAGCACATCTTCAATGCCAT...TGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR TCA 90 bp | TTATTTCACACTGGGGGAGTGTGGGAACATAGAATTCATTTCAACATAGACTTTTTCTCAACAATGTCTTaGACTTCCTTGGCAATCCCG | + |
|
Preference number: 4 (lower is better) Translates to: LFHTGGVWEHRIHFNIDFFSTMS*TSLAIP Trigger: CGGGATTGCCAAGGAAGTTCAAGACATTGTTGAGAA...AAAGTCTATGTTGAAATGAATTCTATGTTCCCACACTCCCCCAGTGTGAAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CCA 90 bp | ATCATTTCTCAGGAGCCGTCCATCTTGATTTGTTTGCTTACACGAGGTGTCTCACTTAAATTCAAAGACTaGGCGTCTAATTTCTCAATG | + |
|
Preference number: 4 (lower is better) Translates to: IISQEPSILICLLTRGVSLKFKD*ASNFSM Trigger: CATTGAGAAATTAGACGCCCAGTCTTTGAATTTAAG...TGAGACACCTCGTGTAAGCAAACAAATCAAGATGGACGGCTCCTGAGAAATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR GCA 90 bp | CCTAAAAGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAAAGTTCTTATACATTTaGTTCACACCTAAGCAGGCC | + |
|
Preference number: 4 (lower is better) Translates to: PKSWRYNFFTCTRKNLKLKFLYI*FTPKQA Trigger: GGCCTGCTTAGGTGTGAAGCAAATGTATAAGAACTT...TAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACTTTTAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR GCA 90 bp | CCTAAAAGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTACCTTTTATAAGGCATTaGTTCCAAAAACATCTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: PKSWRYNFFTCTRKNLKLPFIRH*FQKHLR Trigger: ACGAAGATGTTTTTGGAAGCAATGCCTTATAAAAGG...TAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACTTTTAGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | ACTCTGGCTCCCAGCAGAGCTGTCCCAAGTGAGTGTCACCATGCCCAGCTTTTCAGAGGGGGAGGGAGCTaGTCGTTCTCCACATTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: TLAPSRAVPSECHHAQLFRGGGS*SFSTFS Trigger: TGAGAATGTGGAGAACGACAAGCTCCCTCCCCCTCT...GAAAAGCTGGGCATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAGAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | GGCCGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTAGAGGGGGAGGGAGCTaGTCGTTCTCCACATTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: GRTGSSGPHISMESTLLTRGGGS*SFSTFS Trigger: TGAGAATGTGGAGAACGACAAGCTCCCTCCCCCTCT...AGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 ENSMUST00000143865.2 |
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| CDS-3UTR CAA 90 bp | AGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAGTGCCTCTGCCGGGCCTaGTGGTACTCCTCCCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: SWRYNFFTCTRKNLKLGQCLCRA*WYSSLQ Trigger: CTGGAGGGAGGAGTACCACAAGGCCCGGCAGAGGCA...CTGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | TACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAGTTAGTGCCATGCCTCTGCCGGGCCTaGTGGTACTCCTCCCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: YNFFTCTRKNLKLGQLVPCLCRA*WYSSLQ Trigger: CTGGAGGGAGGAGTACCACAAGGCCCGGCAGAGGCA...TGGCACTAACTGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | CTGGCTCCCAGCAGAGCTGTCCCAAGTGAGTGTCACCATGCCCAGCTTTTCACCTCTTTCAGCCACATTTaGGTAAAAGTCCTGAGTACA | + |
|
Preference number: 5 (lower is better) Translates to: LAPSRAVPSECHHAQLFTSFSHI*VKVLST Trigger: TGTACTCAGGACTTTTACCAAAATGTGGCTGAAAGA...GGTGAAAAGCTGGGCATGGTGACACTCACTTGGGACAGCTCTGCTGGGAGCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | GGCCGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTGTTCATGATCCTTTCTaGCCGTTCATTCAACTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: GRTGSSGPHISMESTLLTVHDPF*PFIQLR Trigger: TCTCAGTTGAATGAACGGCAAGAAAGGATCATGAAC...AGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS CCA 90 bp | AGCTTGTCGTTCTCCACATTCTCAGAGTCGATGGCTGCTAAGGGTTaGTTCGGGGGCTTAATCTCCAGTGGGTATTTCTCAACAATGTCT | + |
|
Preference number: 5 (lower is better) Translates to: SLSFSTFSESMAAKG*FGGLISSGYFSTMS Trigger: AGACATTGTTGAGAAATACCCACTGGAGATTAAGCCCCCGAACCAACCCTTAGCAGCCATCGACTCTGAGAATGTGGAGAACGACAAGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | CGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTGAGTCATTCTTGGTGATCTaGATGGCATTGAAGATGTGC | + |
|
Preference number: 5 (lower is better) Translates to: RTGSSGPHISMESTLLTESFLVI*MALKMC Trigger: GCACATCTTCAATGCCATCAAGATCACCAAGAATGA...CTCAGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | CGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTGAGTTTCTCAACAATGTCTaGAACTTCCTTGGCAATCCC | + |
|
Preference number: 5 (lower is better) Translates to: RTGSSGPHISMESTLLTEFLNNV*NFLGNP Trigger: GGGATTGCCAAGGAAGTTCAAGACATTGTTGAGAAA...CTCAGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | CGGACAGGGAGCTCAGGTCCTCACATCAGTATGGAGAGCACTTTACTGACTGAGTCTTTCAGCCACATTTaGGTAAAAGTCCTGAGTACA | + |
|
Preference number: 5 (lower is better) Translates to: RTGSSGPHISMESTLLTESFSHI*VKVLST Trigger: TGTACTCAGGACTTTTACCAAAATGTGGCTGAAAGA...CTCAGTCAGTAAAGTGCTCTCCATACTGATGTGAGGACCTGAGCTCCCTGTCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | ATGGAGAGCACTTTACTGACTGAGCCACCACCCCAGGGTCCCAGAATAATTCTGTTTCTCAACAATGTCTaGAACTTCCTTGGCAATCCC | + |
|
Preference number: 5 (lower is better) Translates to: MESTLLTEPPPQGPRIILFLNNV*NFLGNP Trigger: GGGATTGCCAAGGAAGTTCAAGACATTGTTGAGAAA...CAGAATTATTCTGGGACCCTGGGGTGGTGGCTCAGTCAGTAAAGTGCTCTCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS TCA 90 bp | TTCCTGGGGGATGTCTGGCCAGACATGTACCGGTCAAAATCCTCCTaGCTTAAATTCAAAGACTGGGCGTCTAATTTCTCAATGAAAGCC | + |
|
Preference number: 5 (lower is better) Translates to: FLGDVWPDMYRSKSS*LKFKDWASNFSMKA Trigger: GGCTTTCATTGAGAAATTAGACGCCCAGTCTTTGAATTTAAGTCAGGAGGATTTTGACCGGTACATGTCTGGCCAGACATCCCCCAGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | CAGTCAGTTCATATTCCGGACCTGAACAGTGGAACGCAGCAGCTCCCAGAAACCTCTTTTTCAAGTTTCTaGGCTTCGTTCATGATCCTT | + |
|
Preference number: 5 (lower is better) Translates to: QSVHIPDLNSGTQQLPETSFSSF*ASFMIL Trigger: AAGGATCATGAACGAAGCCAAGAAACTTGAAAAAGA...GGTTTCTGGGAGCTGCTGCGTTCCACTGTTCAGGTCCGGAATATGAACTGACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | AAGTTGGCGTTACAACTTCTTCACATGTACCAGAAAGAATCTCAAGTTAGGGCAAGAGGGGGAGGGAGCTaGTCGTTCTCCACATTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: KLALQLLHMYQKESQVRARGGGS*SFSTFS Trigger: TGAGAATGTGGAGAACGACAAGCTCCCTCCCCCTCT...TGCCCTAACTTGAGATTCTTTCTGGTACATGTGAAGAAGTTGTAACGCCAACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 ENSMUST00000143865.2 |
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| CDS-3UTR CAA 90 bp | ATGGAGAGCACTTTACTGACTGAGCCACCACCCCAGGGTCCCAGAATAATTCTGTCTTTTTCAAGTTTCTaGGCTTCGTTCATGATCCTT | + |
|
Preference number: 5 (lower is better) Translates to: MESTLLTEPPPQGPRIILSFSSF*ASFMIL Trigger: AAGGATCATGAACGAAGCCAAGAAACTTGAAAAAGA...CAGAATTATTCTGGGACCCTGGGGTGGTGGCTCAGTCAGTAAAGTGCTCTCCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS TCA 90 bp | TGGTTCGGGGGCTTAATCTCCAGTGGGTATTTCTCAACAATGTCTTaGACTTCCTTGGCAATCCCGTCTGTCCAGTCTATTAAGTCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: WFGGLISSGYFSTMS*TSLAIPSVQSIKSF Trigger: AAAAGACTTAATAGACTGGACAGACGGGATTGCCAAGGAAGTTCAAGACATTGTTGAGAAATACCCACTGGAGATTAAGCCCCCGAACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS TCA 90 bp | AGTTTCTTGGCTTCGTTCATGATCCTTTCTTGCCGTTCATTCAACTaGGACAGGAGGTCCAAGTTCTTATACATTTGCTTCACACCTAAG | + |
|
Preference number: 5 (lower is better) Translates to: SFLASFMILSCRSFN*DRRSKFLYICFTPK Trigger: CTTAGGTGTGAAGCAAATGTATAAGAACTTGGACCTCCTGTCTCAGTTGAATGAACGGCAAGAAAGGATCATGAACGAAGCCAAGAAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS TCA 90 bp | CTGTCCAGTCTATTAAGTCTTTTTCAAGTTTCTTGGCTTCGTTCATaGTCCTTTCTTGCCGTTCATTCAACTGAGACAGGAGGTCCAAGT | + |
|
Preference number: 5 (lower is better) Translates to: LSSLLSLFQVSWLRS*SFLAVHSTETGGPS Trigger: ACTTGGACCTCCTGTCTCAGTTGAATGAACGGCAAGAAAGGATCATGAACGAAGCCAAGAAACTTGAAAAAGACTTAATAGACTGGACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS-3UTR CAA 90 bp | AGTTTATTGGATAAACAGGGAAAGGAAGCTGCAAGCACAGTTCCAAGTCAACTGGTTCATGATCCTTTCTaGCCGTTCATTCAACTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: SLLDKQGKEAASTVPSQLVHDPF*PFIQLR Trigger: TCTCAGTTGAATGAACGGCAAGAAAGGATCATGAAC...CAGTTGACTTGGAACTGTGCTTGCAGCTTCCTTTCCCTGTTTATCCAATAAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS CCA 72 bp | TTCTCCACATTCTCAGAGTCGATGGCTGCTAAGGGTTaGTTCGGGGGCTTAATCTCCAGTGGGTATTTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: FSTFSESMAAKG*FGGLISSGYFS Trigger: TGAGAAATACCCACTGGAGATTAAGCCCCCGAACCAACCCTTAGCAGCCATCGACTCTGAGAATGTGGAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS CAA 72 bp | GGGCTTAATCTCCAGTGGGTATTTCTCAACAATGTCTaGAACTTCCTTGGCAATCCCGTCTGTCCAGTCTAT | + |
|
Preference number: 6 (lower is better) Translates to: GLNLQWVFLNNV*NFLGNPVCPVY Trigger: ATAGACTGGACAGACGGGATTGCCAAGGAAGTTCAAGACATTGTTGAGAAATACCCACTGGAGATTAAGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS TCA 72 bp | GATGTCTGGCCAGACATGTACCGGTCAAAATCCTCCTaGCTTAAATTCAAAGACTGGGCGTCTAATTTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: DVWPDMYRSKSS*LKFKDWASNFS Trigger: TGAGAAATTAGACGCCCAGTCTTTGAATTTAAGTCAGGAGGATTTTGACCGGTACATGTCTGGCCAGACATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS TCA 72 bp | GGCTTAATCTCCAGTGGGTATTTCTCAACAATGTCTTaGACTTCCTTGGCAATCCCGTCTGTCCAGTCTATT | + |
|
Preference number: 6 (lower is better) Translates to: GLISSGYFSTMS*TSLAIPSVQSI Trigger: AATAGACTGGACAGACGGGATTGCCAAGGAAGTTCAAGACATTGTTGAGAAATACCCACTGGAGATTAAGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS TCA 72 bp | GCTTCGTTCATGATCCTTTCTTGCCGTTCATTCAACTaGGACAGGAGGTCCAAGTTCTTATACATTTGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: ASFMILSCRSFN*DRRSKFLYICF Trigger: GAAGCAAATGTATAAGAACTTGGACCTCCTGTCTCAGTTGAATGAACGGCAAGAAAGGATCATGAACGAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS CCA 72 bp | CCAGTGGGTATTTCTCAACAATGTCTTGAACTTCCTTaGCAATCCCGTCTGTCCAGTCTATTAAGTCTTTTT | + |
|
Preference number: 6 (lower is better) Translates to: PVGISQQCLELP*QSRLSSLLSLF Trigger: AAAAAGACTTAATAGACTGGACAGACGGGATTGCCAAGGAAGTTCAAGACATTGTTGAGAAATACCCACTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS CAA 72 bp | CCGTCTGTCCAGTCTATTAAGTCTTTTTCAAGTTTCTaGGCTTCGTTCATGATCCTTTCTTGCCGTTCATTC | + |
|
Preference number: 6 (lower is better) Translates to: PSVQSIKSFSSF*ASFMILSCRSF Trigger: GAATGAACGGCAAGAAAGGATCATGAACGAAGCCAAGAAACTTGAAAAAGACTTAATAGACTGGACAGACGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026390.8 ENSMUST00000119797.8 |
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| CDS GCA 72 bp | GGTAAAAGTCCTGAGTACATTCTGACTGTTCCTCGATaGTTAAATCCCTTTTATAAGGCATTGCTTCCAAAA | + |
|
Preference number: 6 (lower is better) Translates to: GKSPEYILTVPR*LNPFYKALLPK Trigger: TTTTGGAAGCAATGCCTTATAAAAGGGATTTAAGCATCGAGGAACAGTCAGAATGTACTCAGGACTTTTACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000026390.8 ENSMUST00000119027.8 ENSMUST00000119797.8 ENSMUST00000148264.8 |
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