Pregenerated sensors for RAB9B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043463Ensembl transcript IDs: ENSMUST00000058814.7
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCGTGCACGTACTTTCATGTATGTGTCTGTGTGTACCTGTGTGTATaGAATTGCCTGTGTGAGCATGCTTTCATGTACGTGTGTGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: ACTYFHVCVCVYLCV*NCLCEHAFMYVCVC Trigger: ACACACACACACGTACATGAAAGCATGCTCACACAGGCAATTGCATACACACAGGTACACACAGACACATACATGAAAGTACGTGCACGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR TCA 90 bp | TACTCACATGACCACATGCCACTCTACAGAGACAAATACTTTGTGTaGGCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGA | + |
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Preference number: 1 (lower is better) Translates to: YSHDHMPLYRDKYFV*ADGDLYEGLRSTDR Trigger: TCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGCTCACACAAAGTATTTGTCTCTGTAGAGTGGCATGTGGTCATGTGAGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR TCA 90 bp | ACCAGTGTGGCTGGCTATAGGCATAGGCAAGATAGGAACCAATATTTAAGAGTTCTTTCTGATATGTCCTaGGCCACACAAGAAGGGAAA | + |
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Preference number: 2 (lower is better) Translates to: TSVAGYRHRQDRNQYLRVLSDMS*ATQEGK Trigger: TTTCCCTTCTTGTGTGGCTCAGGACATATCAGAAAG...AACTCTTAAATATTGGTTCCTATCTTGCCTATGCCTATAGCCAGCCACACTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR GCA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCCTGTATTCCTGTGAATaGTCCCACCCAATCCCAGGC | + |
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Preference number: 2 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVLYSCE*SHPIPG Trigger: GCCTGGGATTGGGTGGGAGCATTCACAGGAATACAG...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR TCA 90 bp | ACCAGTGTGGCTGGCTATAGGCATAGGCAAGATAGGAACCAATATTTAAGAGTTCCATACGTAAGGATTTaGACATGTCAGTGTGTTTTT | + |
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Preference number: 2 (lower is better) Translates to: TSVAGYRHRQDRNQYLRVPYVRI*TCQCVF Trigger: AAAAACACACTGACATGTTCAAATCCTTACGTATGG...AACTCTTAAATATTGGTTCCTATCTTGCCTATGCCTATAGCCAGCCACACTGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR GCA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGGTGTACCTGTGTGTATaGAATTGCCTGTGTGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKVYLCV*NCLCEH Trigger: ATGCTCACACAGGCAATTGCATACACACAGGTACAC...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR GCA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCTCTTTCACTCCTTCATaGGGCTGGGTTCTAGGTTTA | + |
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Preference number: 2 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVSFTPS*GWVLGL Trigger: TAAACCTAGAACCCAGCCGCATGAAGGAGTGAAAGA...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR CCA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGACTCCTTCATGCGGCTaGGTTCTAGGTTTAAACTGT | + |
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Preference number: 2 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKTPSCG*VLGLNC Trigger: ACAGTTTAAACCTAGAACCCAGCCGCATGAAGGAGT...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR TCA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGAGGACTAAAACTTTCTaGTATGTCCTGAGCCACACA | + |
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Preference number: 2 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKRTKTF*YVLSHT Trigger: TGTGTGGCTCAGGACATATCAGAAAGTTTTAGTCCT...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR CCA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCGTGGCCTTTGCTAGCTaGTTAATGGAACACTTTAAG | + |
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Preference number: 2 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVVAFAS*LMEHFK Trigger: CTTAAAGTGTTCCATTAACCAGCTAGCAAAGGCCAC...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR TCA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGACCAGGACATGGCACTaGCATAGTTTATATTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKTRTWH*HSLYSE Trigger: TTCTGAATATAAACTATGTCAGTGCCATGTCCTGGT...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR TCA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCTTATTTTTACTCACATaGCCACATGCCACTCTACAG | + |
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Preference number: 2 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVLFLLT*PHATLQ Trigger: CTGTAGAGTGGCATGTGGTCATGTGAGTAAAAATAA...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR GCA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCGAAGCAACATCTCTATaGAGCAGCAGTAGACTTAAT | + |
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Preference number: 2 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVEATSL*SSSRLN Trigger: ATTAAGTCTACTGCTGCTGCATAGAGATGTTGCTTC...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR CCA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCCATGTGTGGCTACAATaGAGAATTCTAGGCTGTATT | + |
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Preference number: 2 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVHVWLQ*RILGCI Trigger: AATACAGCCTAGAATTCTCCATTGTAGCCACACATG...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR GCA 72 bp | GCTACAATGGAGAATTCTAGGCTGTATTCCTGTGAATaGTCCCACCCAATCCCAGGCCTAAATCTCTTTGGA | + |
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Preference number: 3 (lower is better) Translates to: ATMENSRLYSCE*SHPIPGLNLFG Trigger: TCCAAAGAGATTTAGGCCTGGGATTGGGTGGGAGCATTCACAGGAATACAGCCTAGAATTCTCCATTGTAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR CAA 90 bp | CTAAGCAGCATCACTAAATTGATAAGTTGTCAAGGAAGCAACATCTCTATGCAGACTACTTGGCAAGAGTaGGTGGCCTTTGCTAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: LSSITKLISCQGSNISMQTTWQE*VAFASW Trigger: CCAGCTAGCAAAGGCCACCAACTCTTGCCAAGTAGT...CTGCATAGAGATGTTGCTTCCTTGACAACTTATCAATTTAGTGATGCTGCTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR TCA 72 bp | GACCACATGCCACTCTACAGAGACAAATACTTTGTGTaGGCTGATGGAGATCTTTATGAAGGCCTGAGATCT | + |
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Preference number: 3 (lower is better) Translates to: DHMPLYRDKYFV*ADGDLYEGLRS Trigger: AGATCTCAGGCCTTCATAAAGATCTCCATCAGCTCACACAAAGTATTTGTCTCTGTAGAGTGGCATGTGGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR CAA 90 bp | ACCAGTGTGGCTGGCTATAGGCATAGGCAAGATAGGAACCAATATTTAAGAGTTAGACTGACCAACTTATaGCACACTTGTCAAGAGTCC | + |
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Preference number: 3 (lower is better) Translates to: TSVAGYRHRQDRNQYLRVRLTNL*HTCQES Trigger: GGACTCTTGACAAGTGTGCAATAAGTTGGTCAGTCT...AACTCTTAAATATTGGTTCCTATCTTGCCTATGCCTATAGCCAGCCACACTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR TCA 72 bp | ACTACCAAAGAGCACAGTCGTTTTTACACAACAGACTaGCCAACTTATTGCACACTTGTCAAGAGTCCCTAC | + |
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Preference number: 3 (lower is better) Translates to: TTKEHSRFYTTD*PTYCTLVKSPY Trigger: GTAGGGACTCTTGACAAGTGTGCAATAAGTTGGTCAGTCTGTTGTGTAAAAACGACTGTGCTCTTTGGTAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR TCA 72 bp | GGCATATTTAAGCGTAATCCATTCACTAGTGTCCTGTaGCTCACATGGATTAGAACCAACCTCCAGTGTCAT | + |
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Preference number: 3 (lower is better) Translates to: GIFKRNPFTSVL*LTWIRTNLQCH Trigger: ATGACACTGGAGGTTGGTTCTAATCCATGTGAGTCACAGGACACTAGTGAATGGATTACGCTTAAATATGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR CCA 72 bp | AAGACACCTGAAATTCATCAATCCGCTGAAGACATATaGAATCTGAAGCCCCTTGAAAGTCAATACATGGCA | + |
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Preference number: 3 (lower is better) Translates to: KTPEIHQSAEDI*NLKPLESQYMA Trigger: TGCCATGTATTGACTTTCAAGGGGCTTCAGATTCCATATGTCTTCAGCGGATTGATGAATTTCAGGTGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR CAA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCACAGAGACAAATACTTaGTGTGAGCTGATGGAGATC | + |
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Preference number: 3 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVTETNT*CELMEI Trigger: GATCTCCATCAGCTCACACAAAGTATTTGTCTCTGT...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR TCA 72 bp | TTAAATCTCTCAGGACTAAAACTTTCTGATATGTCCTaGGCCACACAAGAAGGGAAAATAGCAGGAATTACG | + |
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Preference number: 3 (lower is better) Translates to: LNLSGLKLSDMS*ATQEGKIAGIT Trigger: CGTAATTCCTGCTATTTTCCCTTCTTGTGTGGCTCAGGACATATCAGAAAGTTTTAGTCCTGAGAGATTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR TCA 72 bp | CACTCCTTCATGCGGCTGGGTTCTAGGTTTAAACTGTaGTTAAAAATACTTAAATCTCTCAGGACTAAAACT | + |
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Preference number: 3 (lower is better) Translates to: HSFMRLGSRFKL*LKILKSLRTKT Trigger: AGTTTTAGTCCTGAGAGATTTAAGTATTTTTAATCACAGTTTAAACCTAGAACCCAGCCGCATGAAGGAGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR-3UTR CAA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCAATACTGTCCTACTTTaGTCTATGTGGCCAAAAGTA | + |
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Preference number: 3 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVNTVLL*SMWPKV Trigger: TACTTTTGGCCACATAGACAAAAGTAGGACAGTATT...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR TCA 90 bp | CTAAGCAGCATCACTAAATTGATAAGTTGTCAAGGAAGCAACATCTCTATGCAGGCCGGTCATCCACACTaGAGGTTAGCAGGCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: LSSITKLISCQGSNISMQAGHPH*RLAGSS Trigger: ACTGCTGCCTGCTAACCTTCAGTGTGGATGACCGGC...CTGCATAGAGATGTTGCTTCCTTGACAACTTATCAATTTAGTGATGCTGCTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR TCA 90 bp | AGCTGGTTAATGGAACACTTTAAGCTCTTTCACTCCTTCATGCGGCTGGGTTCTCATCACCCAAGAGGATaGCCTTTAAGAGAAGGGATT | + |
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Preference number: 4 (lower is better) Translates to: SWLMEHFKLFHSFMRLGSHHPRG*PLREGI Trigger: AATCCCTTCTCTTAAAGGTCATCCTCTTGGGTGATG...AGAACCCAGCCGCATGAAGGAGTGAAAGAGCTTAAAGTGTTCCATTAACCAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR GCA 90 bp | CTAAGCAGCATCACTAAATTGATAAGTTGTCAAGGAAGCAACATCTCTATGCAGCATGCACCAGGCTTGTaGCTCCTCAGTCGTTACTTG | + |
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Preference number: 4 (lower is better) Translates to: LSSITKLISCQGSNISMQHAPGL*LLSRYL Trigger: CAAGTAACGACTGAGGAGGCACAAGCCTGGTGCATG...CTGCATAGAGATGTTGCTTCCTTGACAACTTATCAATTTAGTGATGCTGCTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR TCA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGTCTACCCCTATCGTGTaGAAAGCCTGGGAGTCGAAC | + |
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Preference number: 4 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKSTPIV*KAWESN Trigger: GTTCGACTCCCAGGCTTTTCACACGATAGGGGTAGA...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR TCA 90 bp | ACCAGTGTGGCTGGCTATAGGCATAGGCAAGATAGGAACCAATATTTAAGAGTTACCACAAAGGGGAAATaGTCTGGGTCCTTTACATCT | + |
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Preference number: 4 (lower is better) Translates to: TSVAGYRHRQDRNQYLRVTTKGK*SGSFTS Trigger: AGATGTAAAGGACCCAGATCATTTCCCCTTTGTGGT...AACTCTTAAATATTGGTTCCTATCTTGCCTATGCCTATAGCCAGCCACACTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR CAA 72 bp | TGCACCCGAAGCCACATACTAAGCAGCATCACTAAATaGATAAGTTGTCAAGGAAGCAACATCTCTATGCAG | + |
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Preference number: 4 (lower is better) Translates to: CTRSHILSSITK*ISCQGSNISMQ Trigger: CTGCATAGAGATGTTGCTTCCTTGACAACTTATCAATTTAGTGATGCTGCTTAGTATGTGGCTTCGGGTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR GCA 90 bp | AGCTGGTTAATGGAACACTTTAAGCTCTTTCACTCCTTCATGCGGCTGGGTTCTTGGGTCCTTTACATCTaGATAGTAGATGAACTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SWLMEHFKLFHSFMRLGSWVLYI*IVDELF Trigger: AAAGAGTTCATCTACTATGCAGATGTAAAGGACCCA...AGAACCCAGCCGCATGAAGGAGTGAAAGAGCTTAAAGTGTTCCATTAACCAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR CAA 72 bp | AGGAAAAGCAGGCCAACCATGTATTTGCAAATGTGGTaGGCATATTTAAGCGTAATCCATTCACTAGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: RKSRPTMYLQMW*AYLSVIHSLVS Trigger: GGACACTAGTGAATGGATTACGCTTAAATATGCCAACCACATTTGCAAATACATGGTTGGCCTGCTTTTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR GCA 90 bp | CTAAGCAGCATCACTAAATTGATAAGTTGTCAAGGAAGCAACATCTCTATGCAGTCCTCAGTCGTTACTTaGCTATCCTCTTTGTCTACC | + |
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Preference number: 4 (lower is better) Translates to: LSSITKLISCQGSNISMQSSVVT*LSSLST Trigger: GGTAGACAAAGAGGATAGGCAAGTAACGACTGAGGA...CTGCATAGAGATGTTGCTTCCTTGACAACTTATCAATTTAGTGATGCTGCTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR GCA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGAATTTCCATTCTCCATaGACCAGGCTTGTGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKNFHSP*TRLVPP Trigger: AGGAGGCACAAGCCTGGTGCATGGAGAATGGAAATT...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR GCA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGTCTACAGCTAACACCTaGCTAACAGCTTCTTCAAAG | + |
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Preference number: 4 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKSTANT*LTASSK Trigger: CTTTGAAGAAGCTGTTAGGCAGGTGTTAGCTGTAGA...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR CCA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCAAAGGGGAAATGATCTaGGTCCTTTACATCTGCATA | + |
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Preference number: 4 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVKGEMI*VLYICI Trigger: TATGCAGATGTAAAGGACCCAGATCATTTCCCCTTT...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR CCA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGAAGAAGAACTTGCTTTaGAGCCACTGTTCAAATCAA | + |
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Preference number: 4 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKKKNLL*SHCSNQ Trigger: TTGATTTGAACAGTGGCTCCAAAGCAAGTTCTTCTT...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| 3UTR CAA 72 bp | ATATACAGTCTATTTCTGAACACATATGCACAGTTCTaGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAA | + |
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Preference number: 4 (lower is better) Translates to: IYSLFLNTYAQF*VPRIAAFGVFK Trigger: TTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAAGAACTGTGCATATGTGTTCAGAAATAGACTGTATAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR CAA 90 bp | ACCAGTGTGGCTGGCTATAGGCATAGGCAAGATAGGAACCAATATTTAAGAGTTGGTGTTCTAAGGCTCTaGAAACGTTCCTGCCCCGCA | + |
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Preference number: 5 (lower is better) Translates to: TSVAGYRHRQDRNQYLRVGVLRL*KRSCPA Trigger: TGCGGGGCAGGAACGTTTCAAGAGCCTTAGAACACC...AACTCTTAAATATTGGTTCCTATCTTGCCTATGCCTATAGCCAGCCACACTGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR CAA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGCTCCATGCACCAGGCTaGTGCCTCCTCAGTCGTTAC | + |
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Preference number: 5 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKLHAPG*CLLSRY Trigger: GTAACGACTGAGGAGGCACAAGCCTGGTGCATGGAG...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS TCA 90 bp | CAACAAGAAGAACTTGCTTTGGAGCCACTGTTCAAATCAATGGTGTaGCCTAACATACAATGTTCCAGCTGTTCCTCTACAGCTAACACC | + |
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Preference number: 5 (lower is better) Translates to: QQEELALEPLFKSMV*PNIQCSSCSSTANT Trigger: GGTGTTAGCTGTAGAGGAACAGCTGGAACATTGTATGTTAGGTCACACCATTGATTTGAACAGTGGCTCCAAAGCAAGTTCTTCTTGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR CAA 90 bp | CTAAGCAGCATCACTAAATTGATAAGTTGTCAAGGAAGCAACATCTCTATGCAGTCCTCTTTGTCTACCTaGTTACCCAGAACCACAAAG | + |
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Preference number: 5 (lower is better) Translates to: LSSITKLISCQGSNISMQSSLST*LPRTTK Trigger: CTTTGTGGTTCTGGGTAACAAGGTAGACAAAGAGGA...CTGCATAGAGATGTTGCTTCCTTGACAACTTATCAATTTAGTGATGCTGCTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR CAA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGCTCCTCAGTCGTTACTaGCCTATCCTCTTTGTCTAC | + |
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Preference number: 5 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKLLSRY*PILFVY Trigger: GTAGACAAAGAGGATAGGCAAGTAACGACTGAGGAG...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR CAA 90 bp | CTAAGCAGCATCACTAAATTGATAAGTTGTCAAGGAAGCAACATCTCTATGCAGCAAGAAGAACTTGCTTaGGAGCCACTGTTCAAATCA | + |
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Preference number: 5 (lower is better) Translates to: LSSITKLISCQGSNISMQQEELA*EPLFKS Trigger: TGATTTGAACAGTGGCTCCAAAGCAAGTTCTTCTTG...CTGCATAGAGATGTTGCTTCCTTGACAACTTATCAATTTAGTGATGCTGCTTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR CAA 90 bp | GCTGATGGAGATCTTTATGAAGGCCTGAGATCTACAGATAGAAACTATTATAAGGTAGATGAACTCTTTTaGCCAGTTACCAAGGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: ADGDLYEGLRSTDRNYYKVDELF*PVTKVL Trigger: GAGAACCTTGGTAACTGGCAAAAAGAGTTCATCTAC...CTTATAATAGTTTCTATCTGTAGATCTCAGGCCTTCATAAAGATCTCCATCAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS-3UTR CAA 90 bp | TTGGTACCAAGGATAGCAGCTTTTGGTGTTTTTAAATCTTACCCAAACTATGTCAACAACAAGAAGAACTaGCTTTGGAGCCACTGTTCA | + |
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Preference number: 5 (lower is better) Translates to: LVPRIAAFGVFKSYPNYVNNKKN*LWSHCS Trigger: TGAACAGTGGCTCCAAAGCAAGTTCTTCTTGTTGTT...GACATAGTTTGGGTAAGATTTAAAAACACCAAAAGCTGCTATCCTTGGTACCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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| CDS TCA 72 bp | GAACTTGCTTTGGAGCCACTGTTCAAATCAATGGTGTaGCCTAACATACAATGTTCCAGCTGTTCCTCTACA | + |
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Preference number: 6 (lower is better) Translates to: ELALEPLFKSMV*PNIQCSSCSST Trigger: TGTAGAGGAACAGCTGGAACATTGTATGTTAGGTCACACCATTGATTTGAACAGTGGCTCCAAAGCAAGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058814.7 |
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