Pregenerated sensors for RAB9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079316

Ensembl transcript IDs: ENSMUST00000112091.9

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	ACTCTTCTGCATACTAATTTGTTTCTCCACCTTTCTGTGTGTGTGTGTGTGTGTCAGAATTCTTCGAACTaGCTCCTCAAAGGCAGCAGC	+
Preference number: 4 (lower is better) Translates to: TLLHTNLFLHLSVCVCVCQNSSN*LLKGSS Trigger: GCTGCTGCCTTTGAGGAGGCAGTTCGAAGAATTCTG...ACACACACACACACACACAGAAAGGTGGAGAAACAAATTAGTATGCAGAAGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112091.9
CDS-3UTR TCA 90 bp	ACTCTTCTGCATACTAATTTGTTTCTCCACCTTTCTGTGTGTGTGTGTGTGTGTTTGACTGTGTCTGTCTaGATCAGGTGTTCTGACCTA	+
Preference number: 4 (lower is better) Translates to: TLLHTNLFLHLSVCVCVCLTVSV*IRCSDL Trigger: TAGGTCAGAACACCTGATTCAGACAGACACAGTCAA...ACACACACACACACACACAGAAAGGTGGAGAAACAAATTAGTATGCAGAAGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112091.9
CDS-3UTR GCA 90 bp	ACTCTTCTGCATACTAATTTGTTTCTCCACCTTTCTGTGTGTGTGTGTGTGTGTTCTTCTGTAGACACCTaGCGTTCTTTTATGTCAGTC	+
Preference number: 4 (lower is better) Translates to: TLLHTNLFLHLSVCVCVCSSVDT*RSFMSV Trigger: GACTGACATAAAAGAACGGCAGGTGTCTACAGAAGA...ACACACACACACACACACAGAAAGGTGGAGAAACAAATTAGTATGCAGAAGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112091.9
CDS-3UTR TCA 90 bp	ACTCTTCTGCATACTAATTTGTTTCTCCACCTTTCTGTGTGTGTGTGTGTGTGTATTCTGGAAGCTCTGTaGATCATCGACACTAAATGT	+
Preference number: 4 (lower is better) Translates to: TLLHTNLFLHLSVCVCVCILEAL*IIDTKC Trigger: ACATTTAGTGTCGATGATTCACAGAGCTTCCAGAAT...ACACACACACACACACACAGAAAGGTGGAGAAACAAATTAGTATGCAGAAGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112091.9
CDS-3UTR CCA 90 bp	ACTCTTCTGCATACTAATTTGTTTCTCCACCTTTCTGTGTGTGTGTGTGTGTGTATTGTGTGGAAGAGCTaGGAATCAAATTTATTGGTT	+
Preference number: 4 (lower is better) Translates to: TLLHTNLFLHLSVCVCVCIVWKS*ESNLLV Trigger: AACCAATAAATTTGATTCCCAGCTCTTCCACACAAT...ACACACACACACACACACAGAAAGGTGGAGAAACAAATTAGTATGCAGAAGAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112091.9
CDS-3UTR CAA 90 bp	ACTCTTCTGCATACTAATTTGTTTCTCCACCTTTCTGTGTGTGTGTGTGTGTGTCAAGATGAGTTTGGCTaGGGCTTTCGGTGCAGATTG	+
Preference number: 5 (lower is better) Translates to: TLLHTNLFLHLSVCVCVCQDEFG*GFRCRL Trigger: CAATCTGCACCGAAAGCCCAAGCCAAACTCATCTTG...ACACACACACACACACACAGAAAGGTGGAGAAACAAATTAGTATGCAGAAGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112091.9
CDS-3UTR CAA 90 bp	ACTCTTCTGCATACTAATTTGTTTCTCCACCTTTCTGTGTGTGTGTGTGTGTGTTTTATGTCAGTCTTGTaGCCCAAAATCACAAAGGGA	+
Preference number: 5 (lower is better) Translates to: TLLHTNLFLHLSVCVCVCFMSVL*PKITKG Trigger: TCCCTTTGTGATTTTGGGCAACAAGACTGACATAAA...ACACACACACACACACACAGAAAGGTGGAGAAACAAATTAGTATGCAGAAGAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112091.9
CDS-3UTR CAA 90 bp	ACTCTTCTGCATACTAATTTGTTTCTCCACCTTTCTGTGTGTGTGTGTGTGTGTTCTTTTATGTCAGTCTaGTTGCCCAAAATCACAAAG	+
Preference number: 5 (lower is better) Translates to: TLLHTNLFLHLSVCVCVCSFMSV*LPKITK Trigger: CTTTGTGATTTTGGGCAACAAGACTGACATAAAAGA...ACACACACACACACACACAGAAAGGTGGAGAAACAAATTAGTATGCAGAAGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112091.9
CDS TCA 72 bp	GTGCAGATTGACTGTGTCTGTCTGAATCAGGTGTTCTaGCCTATCTTCCGTGGCCAGAATTCTTCGAACTGC	+
Preference number: 6 (lower is better) Translates to: VQIDCVCLNQVF*PIFRGQNSSNC Trigger: GCAGTTCGAAGAATTCTGGCCACGGAAGATAGGTCAGAACACCTGATTCAGACAGACACAGTCAATCTGCAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112091.9