Pregenerated sensors for RAB8A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003037Ensembl transcript IDs: ENSMUST00000003121.9
Found 113 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTGAAGGCAGGTGCAGGCTTGTCCCTCAGTGGCCCCGGTGGTGGTaGTTGGAGTATGGGGGCCAGGCAGGCTGGGCACTACCGCTGGCT | + |
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Preference number: 1 (lower is better) Translates to: AEGRCRLVPQWPRWW*LEYGGQAGWALPLA Trigger: AGCCAGCGGTAGTGCCCAGCCTGCCTGGCCCCCATACTCCAAGCACCACCACCGGGGCCACTGAGGGACAAGCCTGCACCTGCCTTCAGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CCA 90 bp | TGGGGGCCAGGCAGGCTGGGCACTACCGCTGGCTACCTTCTGTGCTaGAAGGACAGAAGGCTGGAAATGGAGGCTGCCGGGCCCCCACCC | + |
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Preference number: 1 (lower is better) Translates to: WGPGRLGTTAGYLLC*KDRRLEMEAAGPPP Trigger: GGGTGGGGGCCCGGCAGCCTCCATTTCCAGCCTTCTGTCCTTCCAGCACAGAAGGTAGCCAGCGGTAGTGCCCAGCCTGCCTGGCCCCCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CCA 90 bp | GTGCAGGCTTGTCCCTCAGTGGCCCCGGTGGTGGTGCTTGGAGTATaGGGGCCAGGCAGGCTGGGCACTACCGCTGGCTACCTTCTGTGC | + |
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Preference number: 1 (lower is better) Translates to: VQACPSVAPVVVLGV*GPGRLGTTAGYLLC Trigger: GCACAGAAGGTAGCCAGCGGTAGTGCCCAGCCTGCCTGGCCCCCATACTCCAAGCACCACCACCGGGGCCACTGAGGGACAAGCCTGCAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CCA 90 bp | CAGTGGCCCCGGTGGTGGTGCTTGGAGTATGGGGGCCAGGCAGGCTaGGCACTACCGCTGGCTACCTTCTGTGCTGGAAGGACAGAAGGC | + |
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Preference number: 1 (lower is better) Translates to: QWPRWWCLEYGGQAG*ALPLATFCAGRTEG Trigger: GCCTTCTGTCCTTCCAGCACAGAAGGTAGCCAGCGGTAGTGCCCAGCCTGCCTGGCCCCCATACTCCAAGCACCACCACCGGGGCCACTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CCA 90 bp | TGGGCACTACCGCTGGCTACCTTCTGTGCTGGAAGGACAGAAGGCTaGAAATGGAGGCTGCCGGGCCCCCACCCAACCTCTCTCCATCTG | + |
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Preference number: 1 (lower is better) Translates to: WALPLATFCAGRTEG*KWRLPGPHPTSLHL Trigger: CAGATGGAGAGAGGTTGGGTGGGGGCCCGGCAGCCTCCATTTCCAGCCTTCTGTCCTTCCAGCACAGAAGGTAGCCAGCGGTAGTGCCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR GCA 90 bp | CATCACAACTGGGTAAAGACAGCAGGGGAGCGCTGTGCCATGGAATaGTTGTCTGGGACTCAGGGACCAGGTGCCCTGTGGGCACAGGGC | + |
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Preference number: 1 (lower is better) Translates to: HHNWVKTAGERCAME*LSGTQGPGALWAQG Trigger: GCCCTGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAGCGCTCCCCTGCTGTCTTTACCCAGTTGTGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CCA 90 bp | CTGGGTAAAGACAGCAGGGGAGCGCTGTGCCATGGAATGCTTGTCTaGGACTCAGGGACCAGGTGCCCTGTGGGCACAGGGCAGTCATTC | + |
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Preference number: 1 (lower is better) Translates to: LGKDSRGALCHGMLV*DSGTRCPVGTGQSF Trigger: GAATGACTGCCCTGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAGCGCTCCCCTGCTGTCTTTACCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR GCA 90 bp | GGAGCGCTGTGCCATGGAATGCTTGTCTGGGACTCAGGGACCAGGTaGCCTGTGGGCACAGGGCAGTCATTCTGGTTCCCAATTTCCCAG | + |
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Preference number: 1 (lower is better) Translates to: GALCHGMLVWDSGTR*PVGTGQSFWFPISQ Trigger: CTGGGAAATTGGGAACCAGAATGACTGCCCTGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAGCGCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR GCA 90 bp | AGAGCTGTCACATCACAACTGGGTAAAGACAGCAGGGGAGCGCTGTaGCATGGAATGCTTGTCTGGGACTCAGGGACCAGGTGCCCTGTG | + |
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Preference number: 1 (lower is better) Translates to: RAVTSQLGKDSRGAL*HGMLVWDSGTRCPV Trigger: CACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAGCGCTCCCCTGCTGTCTTTACCCAGTTGTGATGTGACAGCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR TCA 90 bp | AATGACAGTGGGTCATGGGAGAATGGTGGTGACGTCACCTCAGTCTaGATCGCAGACTCCCATCCTGCTCTGGCCATGGAAGCGGTCCAC | + |
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Preference number: 1 (lower is better) Translates to: NDSGSWENGGDVTSV*IADSHPALAMEAVH Trigger: GTGGACCGCTTCCATGGCCAGAGCAGGATGGGAGTCTGCGATTCAGACTGAGGTGACGTCACCACCATTCTCCCATGACCCACTGTCATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CCA 90 bp | TGTGCCATGGAATGCTTGTCTGGGACTCAGGGACCAGGTGCCCTGTaGGCACAGGGCAGTCATTCTGGTTCCCAATTTCCCAGGTATGCT | + |
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Preference number: 1 (lower is better) Translates to: CAMECLSGTQGPGAL*AQGSHSGSQFPRYA Trigger: AGCATACCTGGGAAATTGGGAACCAGAATGACTGCCCTGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CCA 90 bp | GTCCCAATCAGTCTCCCCAGGAGGACAGAGCTGTCACATCACAACTaGGTAAAGACAGCAGGGGAGCGCTGTGCCATGGAATGCTTGTCT | + |
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Preference number: 1 (lower is better) Translates to: VPISLPRRTELSHHN*VKTAGERCAMECLS Trigger: AGACAAGCATTCCATGGCACAGCGCTCCCCTGCTGTCTTTACCCAGTTGTGATGTGACAGCTCTGTCCTCCTGGGGAGACTGATTGGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR TCA 90 bp | GTAACCACACTGGCACACAGCTTGGCAGGCAAATCTACAGACAGATaGCAGGCTGCCAGTGGCAACTCACCAAGGGGGACAATGGGAAGT | + |
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Preference number: 1 (lower is better) Translates to: VTTLAHSLAGKSTDR*QAASGNSPRGTMGS Trigger: ACTTCCCATTGTCCCCCTTGGTGAGTTGCCACTGGCAGCCTGTCATCTGTCTGTAGATTTGCCTGCCAAGCTGTGTGCCAGTGTGGTTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR TCA 90 bp | TCCTGTGTGAGTGCTGACTGCCGAGCGACTGCTGGCAAGAACGATTaGAACAGCCCCAAAGAACTATTTCTAAACAGGCCCACAACCCCC | + |
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Preference number: 1 (lower is better) Translates to: SCVSADCRATAGKND*NSPKELFLNRPTTP Trigger: GGGGGTTGTGGGCCTGTTTAGAAATAGTTCTTTGGGGCTGTTTCAATCGTTCTTGCCAGCAGTCGCTCGGCAGTCAGCACTCACACAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR TCA 90 bp | GCTGGGTTTGGTGAAGACTGCCTGCCATTCCAGCATCATAGAGGCTaGGTCAAGAAGATTTGCTGCAAGTTCAAGAACAGCCTGGGCTAC | + |
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Preference number: 1 (lower is better) Translates to: AGFGEDCLPFQHHRG*VKKICCKFKNSLGY Trigger: GTAGCCCAGGCTGTTCTTGAACTTGCAGCAAATCTTCTTGACTCAGCCTCTATGATGCTGGAATGGCAGGCAGTCTTCACCAAACCCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR GCA 90 bp | GTGGCCCACAATGATATGAGCCAGCTGGGTTTGGTGAAGACTGCCTaGCATTCCAGCATCATAGAGGCTGAGTCAAGAAGATTTGCTGCA | + |
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Preference number: 1 (lower is better) Translates to: VAHNDMSQLGLVKTA*HSSIIEAESRRFAA Trigger: TGCAGCAAATCTTCTTGACTCAGCCTCTATGATGCTGGAATGGCAGGCAGTCTTCACCAAACCCAGCTGGCTCATATCATTGTGGGCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CCA 90 bp | ACCGTGGGCACCAAATCTTGTCCTTGCACCCTGCTTGGTAAACACTaGCTTGGAACCCAGATTACAAATATGCCTGGCAGGACCAGATAT | + |
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Preference number: 1 (lower is better) Translates to: TVGTKSCPCTLLGKH*LGTQITNMPGRTRY Trigger: ATATCTGGTCCTGCCAGGCATATTTGTAATCTGGGTTCCAAGCCAGTGTTTACCAAGCAGGGTGCAAGGACAAGATTTGGTGCCCACGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR TCA 90 bp | GCTTGGAACCCAGATTACAAATATGCCTGGCAGGACCAGATATGCTaGGCTCTTTCTGAGGGCCAACTAATTCTACAGGGATGTGAGTTA | + |
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Preference number: 1 (lower is better) Translates to: AWNPDYKYAWQDQIC*ALSEGQLILQGCEL Trigger: TAACTCACATCCCTGTAGAATTAGTTGGCCCTCAGAAAGAGCTCAGCATATCTGGTCCTGCCAGGCATATTTGTAATCTGGGTTCCAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR GCA 90 bp | CAGGGACCAGGTGCCCTGTGGGCACAGGGCAGTCATTCTGGTTCCCAATTTCCCGCTGGAAATGGAGGCTaGCGGGCCCCCACCCAACCT | + |
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Preference number: 2 (lower is better) Translates to: QGPGALWAQGSHSGSQFPAGNGG*RAPTQP Trigger: AGGTTGGGTGGGGGCCCGGCAGCCTCCATTTCCAGC...GGGAAATTGGGAACCAGAATGACTGCCCTGTGCCCACAGGGCACCTGGTCCCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR GCA 90 bp | CTCCCACCAGGACATCAGTCCCAATCAGTCTCCCCAGGAGGACAGAGCTGTCACTGGCCCCGGTGGTGGTaGTTGGAGTATGGGGGCCAG | + |
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Preference number: 2 (lower is better) Translates to: LPPGHQSQSVSPGGQSCHWPRWW*LEYGGQ Trigger: CTGGCCCCCATACTCCAAGCACCACCACCGGGGCCA...GTGACAGCTCTGTCCTCCTGGGGAGACTGATTGGGACTGATGTCCTGGTGGGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CAA 90 bp | CACAACTGGGTAAAGACAGCAGGGGAGCGCTGTGCCATGGAATGCTaGTCTGGGACTCAGGGACCAGGTGCCCTGTGGGCACAGGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: HNWVKTAGERCAMEC*SGTQGPGALWAQGS Trigger: ACTGCCCTGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAGCGCTCCCCTGCTGTCTTTACCCAGTTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR TCA 90 bp | CAGGGACCAGGTGCCCTGTGGGCACAGGGCAGTCATTCTGGTTCCCAATTTCCCCGGTTTTGGTGCCACTaGGGCAGGTGGCCCAATGAC | + |
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Preference number: 2 (lower is better) Translates to: QGPGALWAQGSHSGSQFPRFWCH*GRWPND Trigger: GTCATTGGGCCACCTGCCTCAGTGGCACCAAAACCG...GGGAAATTGGGAACCAGAATGACTGCCCTGTGCCCACAGGGCACCTGGTCCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | ACCAGGACATCAGTCCCACCAGGACATCAGTCCCACCAGGACACCCTCCCACCAGGAAGGACAGAAGGCTaGAAATGGAGGCTGCCGGGC | + |
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Preference number: 2 (lower is better) Translates to: TRTSVPPGHQSHQDTLPPGRTEG*KWRLPG Trigger: GCCCGGCAGCCTCCATTTCCAGCCTTCTGTCCTTCC...TGGTGGGAGGGTGTCCTGGTGGGACTGATGTCCTGGTGGGACTGATGTCCTGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | GCTGCGAGTGCTCAACTGCAGAGCCACCTCTCTAGGCCTCAGGCCACTTTTTGCGCAGGCACAGTCAGCTaGGCTGAGCACAGGCTCAGA | + |
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Preference number: 2 (lower is better) Translates to: AASAQLQSHLSRPQATFCAGTVS*AEHRLR Trigger: TCTGAGCCTGTGCTCAGCCCAGCTGACTGTGCCTGC...GCAAAAAGTGGCCTGAGGCCTAGAGAGGTGGCTCTGCAGTTGAGCACTCGCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | CGATTAGAGCCAGCCAGAGAAGATTGGGGAGGCGGTTTTGGTGCCACTGAGGCAACAGAAGGCTGGAAATaGAGGCTGCCGGGCCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: RLEPAREDWGGGFGATEATEGWK*RLPGPH Trigger: GTGGGGGCCCGGCAGCCTCCATTTCCAGCCTTCTGT...TGCCTCAGTGGCACCAAAACCGCCTCCCCAATCTTCTCTGGCTGGCTCTAATCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR TCA 90 bp | CTCCCACCAGGACATCAGTCCCAATCAGTCTCCCCAGGAGGACAGAGCTGTCACAGGCAGGTGGCCCAATaGCAGTGGGTCATGGGAGAA | + |
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Preference number: 2 (lower is better) Translates to: LPPGHQSQSVSPGGQSCHRQVAQ*QWVMGE Trigger: TTCTCCCATGACCCACTGTCATTGGGCCACCTGCCT...GTGACAGCTCTGTCCTCCTGGGGAGACTGATTGGGACTGATGTCCTGGTGGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR GCA 90 bp | GTAGGCAGTAAGAGCCAGAGGGGAGGATGTGTGCAGTGTTTGCCAGACATGACAGACTCAGGGACCAGGTaGCCTGTGGGCACAGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: VGSKSQRGGCVQCLPDMTDSGTR*PVGTGQ Trigger: CTGCCCTGTGCCCACAGGGCACCTGGTCCCTGAGTC...TGTCATGTCTGGCAAACACTGCACACATCCTCCCCTCTGGCTCTTACTGCCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR TCA 90 bp | CTGTGCCATGGAATGCTTGTCTGGGACTCAGGGACCAGGTGCCCTGTGGGCACAACAACTGAGAACAGCTaGAGGCAGGTGCAGGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: LCHGMLVWDSGTRCPVGTTTENS*RQVQAC Trigger: ACAAGCCTGCACCTGCCTTCAGCTGTTCTCAGTTGT...TGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | CTCCCACCAGGACATCAGTCCCAATCAGTCTCCCCAGGAGGACAGAGCTGTCACATCCTGCTCTGGCCATaGAAGCGGTCCACTTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: LPPGHQSQSVSPGGQSCHILLWP*KRSTSS Trigger: GGAAGAAGTGGACCGCTTCCATGGCCAGAGCAGGAT...GTGACAGCTCTGTCCTCCTGGGGAGACTGATTGGGACTGATGTCCTGGTGGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | CTCCCACCAGGACATCAGTCCCAATCAGTCTCCCCAGGAGGACAGAGCTGTCACAATGACAGTGGGTCATaGGAGAATGGTGGTGACGTC | + |
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Preference number: 2 (lower is better) Translates to: LPPGHQSQSVSPGGQSCHNDSGS*ENGGDV Trigger: GACGTCACCACCATTCTCCCATGACCCACTGTCATT...GTGACAGCTCTGTCCTCCTGGGGAGACTGATTGGGACTGATGTCCTGGTGGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | CACTCCCCATCTTCCAGGCATCTTCCTCCAAACTATGAGGTGGGAGCTGTGACCCATGGAATGCTTGTCTaGGACTCAGGGACCAGGTGC | + |
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Preference number: 2 (lower is better) Translates to: HSPSSRHLPPNYEVGAVTHGMLV*DSGTRC Trigger: GCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATG...GGTCACAGCTCCCACCTCATAGTTTGGAGGAAGATGCCTGGAAGATGGGGAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR TCA 90 bp | TCTACATATCGAGTACAGGGTGGCTGGGGCTACATAATGAGGCCCTGTCTCAACATGAGGTGGGAGCTGTaGCCCACTTTGTGGCCCACA | + |
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Preference number: 2 (lower is better) Translates to: STYRVQGGWGYIMRPCLNMRWEL*PTLWPT Trigger: TGTGGGCCACAAAGTGGGTCACAGCTCCCACCTCAT...GTTGAGACAGGGCCTCATTATGTAGCCCCAGCCACCCTGTACTCGATATGTAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR GCA 90 bp | TCTACATATCGAGTACAGGGTGGCTGGGGCTACATAATGAGGCCCTGTCTCAACACAGCTGAAGGCAGGTaGAGGCTTGTCCCTCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: STYRVQGGWGYIMRPCLNTAEGR*RLVPQW Trigger: CCACTGAGGGACAAGCCTGCACCTGCCTTCAGCTGT...GTTGAGACAGGGCCTCATTATGTAGCCCCAGCCACCCTGTACTCGATATGTAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR TCA 90 bp | CGATTAGAGCCAGCCAGAGAAGATTGGGGAGGCGGTTTTGGTGCCACTGAGGCAGGCCTGACTGGCAGATaGCATAGGAAAAACAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: RLEPAREDWGGGFGATEAGLTGR*HRKNSK Trigger: TTTGCTGTTTTTCCTATGTCATCTGCCAGTCAGGCC...TGCCTCAGTGGCACCAAAACCGCCTCCCCAATCTTCTCTGGCTGGCTCTAATCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | GCCATGGAAGCGGTCCACTTCTTCCAAAATCCTCTAAGTGAGCTTTCCTTAGTTTCCAAACATCAGAGGTaGAGGCTGGCCCGGGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: AMEAVHFFQNPLSELSLVSKHQR*RLARGR Trigger: CCTGCCCCGGGCCAGCCTCCACCTCTGATGTTTGGA...AACTAAGGAAAGCTCACTTAGAGGATTTTGGAAGAAGTGGACCGCTTCCATGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR TCA 90 bp | CACTCCCCATCTTCCAGGCATCTTCCTCCAAACTATGAGGTGGGAGCTGTGACCCAGCATCATAGAGGCTaGGTCAAGAAGATTTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: HSPSSRHLPPNYEVGAVTQHHRG*VKKICC Trigger: GCAGCAAATCTTCTTGACTCAGCCTCTATGATGCTG...GGTCACAGCTCCCACCTCATAGTTTGGAGGAAGATGCCTGGAAGATGGGGAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | TCTACATATCGAGTACAGGGTGGCTGGGGCTACATAATGAGGCCCTGTCTCAACCTTTGGGGAGTATGGTaGAGTGCTTCCCAGGTAGGA | + |
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Preference number: 2 (lower is better) Translates to: STYRVQGGWGYIMRPCLNLWGVW*SASQVG Trigger: TCCTACCTGGGAAGCACTCCACCATACTCCCCAAAG...GTTGAGACAGGGCCTCATTATGTAGCCCCAGCCACCCTGTACTCGATATGTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CAA 90 bp | CATCAGAAGCTGTTGCTCAGCAACATCAGCCAGGAGCAGAAGGGTTaGTGTAACCACACTGGCACACAGCTTGGCAGGCAAATCTACAGA | + |
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Preference number: 2 (lower is better) Translates to: HQKLLLSNISQEQKG*CNHTGTQLGRQIYR Trigger: TCTGTAGATTTGCCTGCCAAGCTGTGTGCCAGTGTGGTTACACAAACCCTTCTGCTCCTGGCTGATGTTGCTGAGCAACAGCTTCTGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | CAATTTCCCAGGTATGCTGCTAGAAAATCAAAGACAGATTCATTTCATGGTGTTGGGGGCCAGGCAGGCTaGGCACTACCGCTGGCTACC | + |
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Preference number: 2 (lower is better) Translates to: QFPRYAARKSKTDSFHGVGGQAG*ALPLAT Trigger: GGTAGCCAGCGGTAGTGCCCAGCCTGCCTGGCCCCC...AACACCATGAAATGAATCTGTCTTTGATTTTCTAGCAGCATACCTGGGAAATTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | CCCCCACATGGTGGCTCACTTGTAAGTGGCTCTAAGGAACCCAAAATATCTCCTGGACTGACAGCAGCTTaGAGCTTGGGGGAAGAGTTA | + |
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Preference number: 2 (lower is better) Translates to: PPHGGSLVSGSKEPKISPGLTAA*SLGEEL Trigger: TAACTCTTCCCCCAAGCTCCAAGCTGCTGTCAGTCC...AGGAGATATTTTGGGTTCCTTAGAGCCACTTACAAGTGAGCCACCATGTGGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | GCTGCGAGTGCTCAACTGCAGAGCCACCTCTCTAGGCCTCAGGCCACTTTTTGCGCAGGTGACTATTGCTaGTACGTTGGTTTTAATTTC | + |
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Preference number: 2 (lower is better) Translates to: AASAQLQSHLSRPQATFCAGDYC*YVGFNF Trigger: GAAATTAAAACCAACGTACCAGCAATAGTCACCTGC...GCAAAAAGTGGCCTGAGGCCTAGAGAGGTGGCTCTGCAGTTGAGCACTCGCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | TCTACATATCGAGTACAGGGTGGCTGGGGCTACATAATGAGGCCCTGTCTCAACCATGTCTGCTGGGCGTaGTGGCACACACTTTTAATC | + |
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Preference number: 2 (lower is better) Translates to: STYRVQGGWGYIMRPCLNHVCWA*WHTLLI Trigger: GATTAAAAGTGTGTGCCACCACGCCCAGCAGACATG...GTTGAGACAGGGCCTCATTATGTAGCCCCAGCCACCCTGTACTCGATATGTAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CAA 90 bp | TGGGCACCAAATCTTGTCCTTGCACCCTGCTTGGTAAACACTGGCTaGGAACCCAGATTACAAATATGCCTGGCAGGACCAGATATGCTG | + |
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Preference number: 2 (lower is better) Translates to: WAPNLVLAPCLVNTG*EPRLQICLAGPDML Trigger: CAGCATATCTGGTCCTGCCAGGCATATTTGTAATCTGGGTTCCAAGCCAGTGTTTACCAAGCAGGGTGCAAGGACAAGATTTGGTGCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | CCCCCACATGGTGGCTCACTTGTAAGTGGCTCTAAGGAACCCAAAATATCTCCTCTGTCACATCACAACTaGGTAAAGACAGCAGGGGAG | + |
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Preference number: 2 (lower is better) Translates to: PPHGGSLVSGSKEPKISPLSHHN*VKTAGE Trigger: CTCCCCTGCTGTCTTTACCCAGTTGTGATGTGACAG...AGGAGATATTTTGGGTTCCTTAGAGCCACTTACAAGTGAGCCACCATGTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | CCCCCACATGGTGGCTCACTTGTAAGTGGCTCTAAGGAACCCAAAATATCTCCTAAGAGGCAGGTACTTTaGGGAGTATGGTGGAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: PPHGGSLVSGSKEPKISPKRQVL*GVWWSA Trigger: AGCACTCCACCATACTCCCCAAAGTACCTGCCTCTT...AGGAGATATTTTGGGTTCCTTAGAGCCACTTACAAGTGAGCCACCATGTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR TCA 90 bp | TCTACATATCGAGTACAGGGTGGCTGGGGCTACATAATGAGGCCCTGTCTCAACATGCTGAGCTCTTTCTaGGGGCCAACTAATTCTACA | + |
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Preference number: 2 (lower is better) Translates to: STYRVQGGWGYIMRPCLNMLSSF*GPTNST Trigger: TGTAGAATTAGTTGGCCCTCAGAAAGAGCTCAGCAT...GTTGAGACAGGGCCTCATTATGTAGCCCCAGCCACCCTGTACTCGATATGTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR-3UTR CCA 90 bp | GCCATGGAAGCGGTCCACTTCTTCCAAAATCCTCTAAGTGAGCTTTCCTTAGTTGGCTACCTTCTGTGCTaGAAGGACAGAAGGCTGGAA | + |
|
Preference number: 2 (lower is better) Translates to: AMEAVHFFQNPLSELSLVGYLLC*KDRRLE Trigger: TTCCAGCCTTCTGTCCTTCCAGCACAGAAGGTAGCC...AACTAAGGAAAGCTCACTTAGAGGATTTTGGAAGAAGTGGACCGCTTCCATGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CAA 90 bp | TACATAATGAGGCCCTGTCTCAACAAAACCATCCATCAGAAGCTGTaGCTCAGCAACATCAGCCAGGAGCAGAAGGGTTTGTGTAACCAC | + |
|
Preference number: 2 (lower is better) Translates to: YIMRPCLNKTIHQKL*LSNISQEQKGLCNH Trigger: GTGGTTACACAAACCCTTCTGCTCCTGGCTGATGTTGCTGAGCAACAGCTTCTGATGGATGGTTTTGTTGAGACAGGGCCTCATTATGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR-3UTR GCA 90 bp | CCCCCACATGGTGGCTCACTTGTAAGTGGCTCTAAGGAACCCAAAATATCTCCTCCCAGATTACAAATATaGCTGGCAGGACCAGATATG | + |
|
Preference number: 2 (lower is better) Translates to: PPHGGSLVSGSKEPKISPPRLQI*LAGPDM Trigger: CATATCTGGTCCTGCCAGGCATATTTGTAATCTGGG...AGGAGATATTTTGGGTTCCTTAGAGCCACTTACAAGTGAGCCACCATGTGGGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CAA 90 bp | CTTAAGAGTGCCACTTTGTACAACTTTATAACCAGTGTTCACATCTaGGTTGTCTTCCTCACCCACTCCCCATCTTCCAGGCATCTTCCT | + |
|
Preference number: 2 (lower is better) Translates to: LKSATLYNFITSVHI*VVFLTHSPSSRHLP Trigger: AGGAAGATGCCTGGAAGATGGGGAGTGGGTGAGGAAGACAACCAAGATGTGAACACTGGTTATAAAGTTGTACAAAGTGGCACTCTTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CAA 90 bp | CAAGTCATCTTCAGCTCCTACAGGAAGGATCTTAAGAGTGCCACTTaGTACAACTTTATAACCAGTGTTCACATCTTGGTTGTCTTCCTC | + |
|
Preference number: 2 (lower is better) Translates to: QVIFSSYRKDLKSAT*YNFITSVHILVVFL Trigger: GAGGAAGACAACCAAGATGTGAACACTGGTTATAAAGTTGTACAAAGTGGCACTCTTAAGATCCTTCCTGTAGGAGCTGAAGATGACTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR-3UTR TCA 90 bp | CAATTTCCCAGGTATGCTGCTAGAAAATCAAAGACAGATTCATTTCATGGTGTTCCAAAATCCTCTAAGTaGGCTTTCCTTAGTTTGTGC | + |
|
Preference number: 2 (lower is better) Translates to: QFPRYAARKSKTDSFHGVPKSSK*AFLSLC Trigger: GCACAAACTAAGGAAAGCTCACTTAGAGGATTTTGG...AACACCATGAAATGAATCTGTCTTTGATTTTCTAGCAGCATACCTGGGAAATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | GCAGGCTTGTCCCTCAGTGGCCCCGGTGGTGGTGCTTaGAGTATGGGGGCCAGGCAGGCTGGGCACTACCGC | + |
|
Preference number: 3 (lower is better) Translates to: AGLSLSGPGGGA*SMGARQAGHYR Trigger: GCGGTAGTGCCCAGCCTGCCTGGCCCCCATACTCCAAGCACCACCACCGGGGCCACTGAGGGACAAGCCTGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | GAAGGCAGGTGCAGGCTTGTCCCTCAGTGGCCCCGGTaGTGGTGCTTGGAGTATGGGGGCCAGGCAGGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: EGRCRLVPQWPR*WCLEYGGQAGW Trigger: CCAGCCTGCCTGGCCCCCATACTCCAAGCACCACCACCGGGGCCACTGAGGGACAAGCCTGCACCTGCCTTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | AGGTGCAGGCTTGTCCCTCAGTGGCCCCGGTGGTGGTaGTTGGAGTATGGGGGCCAGGCAGGCTGGGCACTA | + |
|
Preference number: 3 (lower is better) Translates to: RCRLVPQWPRWW*LEYGGQAGWAL Trigger: TAGTGCCCAGCCTGCCTGGCCCCCATACTCCAAGCACCACCACCGGGGCCACTGAGGGACAAGCCTGCACCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | GACAGCAGGGGAGCGCTGTGCCATGGAATGCTTGTCTaGGACTCAGGGACCAGGTGCCCTGTGGGCACAGGG | + |
|
Preference number: 3 (lower is better) Translates to: DSRGALCHGMLV*DSGTRCPVGTG Trigger: CCCTGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAGCGCTCCCCTGCTGTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | GGCAGGCTGGGCACTACCGCTGGCTACCTTCTGTGCTaGAAGGACAGAAGGCTGGAAATGGAGGCTGCCGGG | + |
|
Preference number: 3 (lower is better) Translates to: GRLGTTAGYLLC*KDRRLEMEAAG Trigger: CCCGGCAGCCTCCATTTCCAGCCTTCTGTCCTTCCAGCACAGAAGGTAGCCAGCGGTAGTGCCCAGCCTGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | AGAACAGCTGAAGGCAGGTGCAGGCTTGTCCCTCAGTaGCCCCGGTGGTGGTGCTTGGAGTATGGGGGCCAG | + |
|
Preference number: 3 (lower is better) Translates to: RTAEGRCRLVPQ*PRWWCLEYGGQ Trigger: CTGGCCCCCATACTCCAAGCACCACCACCGGGGCCACTGAGGGACAAGCCTGCACCTGCCTTCAGCTGTTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | TGGAGTATGGGGGCCAGGCAGGCTGGGCACTACCGCTaGCTACCTTCTGTGCTGGAAGGACAGAAGGCTGGA | + |
|
Preference number: 3 (lower is better) Translates to: WSMGARQAGHYR*LPSVLEGQKAG Trigger: TCCAGCCTTCTGTCCTTCCAGCACAGAAGGTAGCCAGCGGTAGTGCCCAGCCTGCCTGGCCCCCATACTCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | TGGGTAAAGACAGCAGGGGAGCGCTGTGCCATGGAATaGTTGTCTGGGACTCAGGGACCAGGTGCCCTGTGG | + |
|
Preference number: 3 (lower is better) Translates to: WVKTAGERCAME*LSGTQGPGALW Trigger: CCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAGCGCTCCCCTGCTGTCTTTACCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR TCA 72 bp | AGCCAGAGAAGATTGGGGAGGCGGTTTTGGTGCCACTaGGGCAGGTGGCCCAATGACAGTGGGTCATGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: SQRRLGRRFWCH*GRWPNDSGSWE Trigger: CTCCCATGACCCACTGTCATTGGGCCACCTGCCTCAGTGGCACCAAAACCGCCTCCCCAATCTTCTCTGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | TGCCATGGAATGCTTGTCTGGGACTCAGGGACCAGGTaGCCTGTGGGCACAGGGCAGTCATTCTGGTTCCCA | + |
|
Preference number: 3 (lower is better) Translates to: CHGMLVWDSGTR*PVGTGQSFWFP Trigger: TGGGAACCAGAATGACTGCCCTGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR-3UTR CAA 90 bp | CTGTGCCATGGAATGCTTGTCTGGGACTCAGGGACCAGGTGCCCTGTGGGCACAGGACATGGCTGTCACTaGTCCACAACTGAGAACAGC | + |
|
Preference number: 3 (lower is better) Translates to: LCHGMLVWDSGTRCPVGTGHGCH*STTENS Trigger: GCTGTTCTCAGTTGTGGACAAGTGACAGCCATGTCC...TGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | GAATGCTTGTCTGGGACTCAGGGACCAGGTGCCCTGTaGGCACAGGGCAGTCATTCTGGTTCCCAATTTCCC | + |
|
Preference number: 3 (lower is better) Translates to: ECLSGTQGPGAL*AQGSHSGSQFP Trigger: GGGAAATTGGGAACCAGAATGACTGCCCTGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR TCA 72 bp | CTGGCACACAGCTTGGCAGGCAAATCTACAGACAGATaGCAGGCTGCCAGTGGCAACTCACCAAGGGGGACA | + |
|
Preference number: 3 (lower is better) Translates to: LAHSLAGKSTDR*QAASGNSPRGT Trigger: TGTCCCCCTTGGTGAGTTGCCACTGGCAGCCTGTCATCTGTCTGTAGATTTGCCTGCCAAGCTGTGTGCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | ACATCACAACTGGGTAAAGACAGCAGGGGAGCGCTGTaGCATGGAATGCTTGTCTGGGACTCAGGGACCAGG | + |
|
Preference number: 3 (lower is better) Translates to: TSQLGKDSRGAL*HGMLVWDSGTR Trigger: CCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAGCGCTCCCCTGCTGTCTTTACCCAGTTGTGATGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | AGTCTCCCCAGGAGGACAGAGCTGTCACATCACAACTaGGTAAAGACAGCAGGGGAGCGCTGTGCCATGGAA | + |
|
Preference number: 3 (lower is better) Translates to: SLPRRTELSHHN*VKTAGERCAME Trigger: TTCCATGGCACAGCGCTCCCCTGCTGTCTTTACCCAGTTGTGATGTGACAGCTCTGTCCTCCTGGGGAGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR-3UTR CAA 90 bp | GCCATGGAAGCGGTCCACTTCTTCCAAAATCCTCTAAGTGAGCTTTCCTTAGTTCCCCGGTGGTGGTGCTaGGAGTATGGGGGCCAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: AMEAVHFFQNPLSELSLVPRWWC*EYGGQA Trigger: TGCCTGGCCCCCATACTCCAAGCACCACCACCGGGG...AACTAAGGAAAGCTCACTTAGAGGATTTTGGAAGAAGTGGACCGCTTCCATGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR TCA 72 bp | AGGAGACAGTGGACATGGCTGTCACTTGTCCACAACTaGGAACAGCTGAAGGCAGGTGCAGGCTTGTCCCTC | + |
|
Preference number: 3 (lower is better) Translates to: RRQWTWLSLVHN*EQLKAGAGLSL Trigger: GAGGGACAAGCCTGCACCTGCCTTCAGCTGTTCTCAGTTGTGGACAAGTGACAGCCATGTCCACTGTCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR TCA 72 bp | CCACTCCCCATCTTCCAGGCATCTTCCTCCAAACTATaGGGTGGGAGCTGTGACCCACTTTGTGGCCCACAA | + |
|
Preference number: 3 (lower is better) Translates to: PLPIFQASSSKL*GGSCDPLCGPQ Trigger: TTGTGGGCCACAAAGTGGGTCACAGCTCCCACCTCATAGTTTGGAGGAAGATGCCTGGAAGATGGGGAGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | CTGCTGGCTCATTTGTTAGAGCTGCGAGTGCTCAACTaGAGAGCCACCTCTCTAGGCCTCAGGCCACTTTTT | + |
|
Preference number: 3 (lower is better) Translates to: LLAHLLELRVLN*RATSLGLRPLF Trigger: AAAAAGTGGCCTGAGGCCTAGAGAGGTGGCTCTGCAGTTGAGCACTCGCAGCTCTAACAAATGAGCCAGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | TCACCTCAGTCTGAATCGCAGACTCCCATCCTGCTCTaGCCATGGAAGCGGTCCACTTCTTCCAAAATCCTC | + |
|
Preference number: 3 (lower is better) Translates to: SPQSESQTPILL*PWKRSTSSKIL Trigger: GAGGATTTTGGAAGAAGTGGACCGCTTCCATGGCCAGAGCAGGATGGGAGTCTGCGATTCAGACTGAGGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR-3UTR CAA 90 bp | AGGGGAGGATGTGTGCAGTGTTTGCCAGACATGACAAGTAGCTCACTGATTCTAGCCAGCCAGAGAAGATaGGGGAGGCGGTTTTGGTGC | + |
|
Preference number: 3 (lower is better) Translates to: RGGCVQCLPDMTSSSLILASQRR*GRRFWC Trigger: GCACCAAAACCGCCTCCCCAATCTTCTCTGGCTGGC...TAGAATCAGTGAGCTACTTGTCATGTCTGGCAAACACTGCACACATCCTCCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR TCA 72 bp | TTCTTCTTGATAGTACTCCTGGTGCTGATTCCTGTGTaGGTGCTGACTGCCGAGCGACTGCTGGCAAGAACG | + |
|
Preference number: 3 (lower is better) Translates to: FFLIVLLVLIPV*VLTAERLLART Trigger: CGTTCTTGCCAGCAGTCGCTCGGCAGTCAGCACTCACACAGGAATCAGCACCAGGAGTACTATCAAGAAGAA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | GATTTTCAGCAGACCGTGGGCACCAAATCTTGTCCTTaGACCCTGCTTGGTAAACACTGGCTTGGAACCCAG | + |
|
Preference number: 3 (lower is better) Translates to: DFQQTVGTKSCP*TLLGKHWLGTQ Trigger: CTGGGTTCCAAGCCAGTGTTTACCAAGCAGGGTGCAAGGACAAGATTTGGTGCCCACGGTCTGCTGAAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | AAGGGCTTGAGACAGCTGGTGGTTAGGAACACTGATTaGTCTTGCAGAGTACTAGGATTTGGTAGGGCCCCC | + |
|
Preference number: 3 (lower is better) Translates to: KGLRQLVVRNTD*SCRVLGFGRAP Trigger: GGGGGCCCTACCAAATCCTAGTACTCTGCAAGAGCAATCAGTGTTCCTAACCACCAGCTGTCTCAAGCCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | TTAGGAGGTGGTGGGACCTTTAAGAGGCAGGTACTTTaGGGAGTATGGTGGAGTGCTTCCCAGGTAGGAAGT | + |
|
Preference number: 3 (lower is better) Translates to: LGGGGTFKRQVL*GVWWSASQVGS Trigger: ACTTCCTACCTGGGAAGCACTCCACCATACTCCCCAAAGTACCTGCCTCTTAAAGGTCCCACCACCTCCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR-3UTR CAA 90 bp | GTAGGCAGTAAGAGCCAGAGGGGAGGATGTGTGCAGTGTTTGCCAGACATGACAGTGCTTCCCTTTGGTTaGACACGTAAGGAGACAGTG | + |
|
Preference number: 3 (lower is better) Translates to: VGSKSQRGGCVQCLPDMTVLPFG*TRKETV Trigger: CACTGTCTCCTTACGTGTCAAACCAAAGGGAAGCAC...TGTCATGTCTGGCAAACACTGCACACATCCTCCCCTCTGGCTCTTACTGCCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | AGCAGACCGTGGGCACCAAATCTTGTCCTTGCACCCTaGTTGGTAAACACTGGCTTGGAACCCAGATTACAA | + |
|
Preference number: 3 (lower is better) Translates to: SRPWAPNLVLAP*LVNTGLEPRLQ Trigger: TTGTAATCTGGGTTCCAAGCCAGTGTTTACCAAGCAGGGTGCAAGGACAAGATTTGGTGCCCACGGTCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | TTGAGACAGCTGGTGGTTAGGAACACTGATTGCTCTTaGAGAGTACTAGGATTTGGTAGGGCCCCCACATGG | + |
|
Preference number: 3 (lower is better) Translates to: LRQLVVRNTDCS*RVLGFGRAPTW Trigger: CCATGTGGGGGCCCTACCAAATCCTAGTACTCTGCAAGAGCAATCAGTGTTCCTAACCACCAGCTGTCTCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | GGCCCTGTCTCAACAAAACCATCCATCAGAAGCTGTTaGTCAGCAACATCAGCCAGGAGCAGAAGGGTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: GPVSTKPSIRSC*SATSARSRRVC Trigger: ACAAACCCTTCTGCTCCTGGCTGATGTTGCTGAGCAACAGCTTCTGATGGATGGTTTTGTTGAGACAGGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR GCA 72 bp | AATGATATGAGCCAGCTGGGTTTGGTGAAGACTGCCTaGCATTCCAGCATCATAGAGGCTGAGTCAAGAAGA | + |
|
Preference number: 3 (lower is better) Translates to: NDMSQLGLVKTA*HSSIIEAESRR Trigger: TCTTCTTGACTCAGCCTCTATGATGCTGGAATGGCAGGCAGTCTTCACCAAACCCAGCTGGCTCATATCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CCA 72 bp | ACCAAATCTTGTCCTTGCACCCTGCTTGGTAAACACTaGCTTGGAACCCAGATTACAAATATGCCTGGCAGG | + |
|
Preference number: 3 (lower is better) Translates to: TKSCPCTLLGKH*LGTQITNMPGR Trigger: CCTGCCAGGCATATTTGTAATCTGGGTTCCAAGCCAGTGTTTACCAAGCAGGGTGCAAGGACAAGATTTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR TCA 72 bp | CCAGATTACAAATATGCCTGGCAGGACCAGATATGCTaGGCTCTTTCTGAGGGCCAACTAATTCTACAGGGA | + |
|
Preference number: 3 (lower is better) Translates to: PDYKYAWQDQIC*ALSEGQLILQG Trigger: TCCCTGTAGAATTAGTTGGCCCTCAGAAAGAGCTCAGCATATCTGGTCCTGCCAGGCATATTTGTAATCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR TCA 72 bp | CTCGTGATATTCCGGTGGTTTCCACAGACTCTGGACTaGTTGGCAGAGCCTCAGTTTCTTCTTGATAGTACT | + |
|
Preference number: 3 (lower is better) Translates to: LVIFRWFPQTLD*LAEPQFLLDST Trigger: AGTACTATCAAGAAGAAACTGAGGCTCTGCCAATCAGTCCAGAGTCTGTGGAAACCACCGGAATATCACGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR TCA 72 bp | CCCAAAATATCTCCTGATCTCCAGGGGCAACAGGCATaGATGTGGTACACAGTCACATATGTAGGGAGAACA | + |
|
Preference number: 3 (lower is better) Translates to: PKISPDLQGQQA*MWYTVTYVGRT Trigger: TGTTCTCCCTACATATGTGACTGTGTACCACATTCATGCCTGTTGCCCCTGGAGATCAGGAGATATTTTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR TCA 72 bp | TGTTTGCCAGACATGACAAGTAGCTCACTGATTCTATaGCTGCAAGCACAAGACCACCAAAAGACCATGCCA | + |
|
Preference number: 3 (lower is better) Translates to: CLPDMTSSSLIL*LQAQDHQKTMP Trigger: TGGCATGGTCTTTTGGTGGTCTTGTGCTTGCAGTCATAGAATCAGTGAGCTACTTGTCATGTCTGGCAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CAA 72 bp | GTAAAGACAGCAGGGGAGCGCTGTGCCATGGAATGCTaGTCTGGGACTCAGGGACCAGGTGCCCTGTGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: VKTAGERCAMEC*SGTQGPGALWA Trigger: TGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAGCGCTCCCCTGCTGTCTTTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| CDS-3UTR GCA 90 bp | CAGGGACCAGGTGCCCTGTGGGCACAGGGCAGTCATTCTGGTTCCCAATTTCCCGCCGTGTCCCATATCTaGAGTTTAATCCTCTTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: QGPGALWAQGSHSGSQFPAVSHI*SLILLP Trigger: TGGCAAGAGGATTAAACTGCAGATATGGGACACGGC...GGGAAATTGGGAACCAGAATGACTGCCCTGTGCCCACAGGGCACCTGGTCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CAA 72 bp | CTGTTGCTCAGCAACATCAGCCAGGAGCAGAAGGGTTaGTGTAACCACACTGGCACACAGCTTGGCAGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LLLSNISQEQKG*CNHTGTQLGRQ Trigger: TTGCCTGCCAAGCTGTGTGCCAGTGTGGTTACACAAACCCTTCTGCTCCTGGCTGATGTTGCTGAGCAACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| CDS-3UTR CCA 90 bp | CGATTAGAGCCAGCCAGAGAAGATTGGGGAGGCGGTTTTGGTGCCACTGAGGCATTTCTCCCCGTTCCTTaGACACCTGTCTCTTGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: RLEPAREDWGGGFGATEAFLPVP*TPVSCH Trigger: ATGACAAGAGACAGGTGTCCAAGGAACGGGGAGAAA...TGCCTCAGTGGCACCAAAACCGCCTCCCCAATCTTCTCTGGCTGGCTCTAATCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| CDS-3UTR CCA 90 bp | TCTACATATCGAGTACAGGGTGGCTGGGGCTACATAATGAGGCCCTGTCTCAACTGCACCGGAAGAAGCTaGTCCTCTTCTGCTGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: STYRVQGGWGYIMRPCLNCTGRS*SSSAAP Trigger: TGGAGCAGCAGAAGAGGACCAGCTTCTTCCGGTGCA...GTTGAGACAGGGCCTCATTATGTAGCCCCAGCCACCCTGTACTCGATATGTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| 3UTR CAA 72 bp | AGGCCCTGTCTCAACAAAACCATCCATCAGAAGCTGTaGCTCAGCAACATCAGCCAGGAGCAGAAGGGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: RPCLNKTIHQKL*LSNISQEQKGL Trigger: CAAACCCTTCTGCTCCTGGCTGATGTTGCTGAGCAACAGCTTCTGATGGATGGTTTTGTTGAGACAGGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| CDS-3UTR TCA 90 bp | CCCCCACATGGTGGCTCACTTGTAAGTGGCTCTAAGGAACCCAAAATATCTCCTCGATCAGCAGCAGCTTaGACAGGTAATCGTAGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: PPHGGSLVSGSKEPKISPRSAAA*TGNRRS Trigger: AGACCTACGATTACCTGTTCAAGCTGCTGCTGATCG...AGGAGATATTTTGGGTTCCTTAGAGCCACTTACAAGTGAGCCACCATGTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| CDS-3UTR TCA 90 bp | GTAGGCAGTAAGAGCCAGAGGGGAGGATGTGTGCAGTGTTTGCCAGACATGACATATCCCTGGCAAGAGTaGAAAATGCATTCTCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: VGSKSQRGGCVQCLPDMTYPWQE*KMHSPH Trigger: ATGTGGAGAATGCATTTTTCACTCTTGCCAGGGATA...TGTCATGTCTGGCAAACACTGCACACATCCTCCCCTCTGGCTCTTACTGCCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
||
| CDS-3UTR GCA 90 bp | AGGGGAGGATGTGTGCAGTGTTTGCCAGACATGACAAGTAGCTCACTGATTCTACTGGTCCTCTTCTGCTaGTCCACTGTGATCTTGACT | + |
|
Preference number: 4 (lower is better) Translates to: RGGCVQCLPDMTSSSLILLVLFC*STVILT Trigger: AGTCAAGATCACAGTGGAGCAGCAGAAGAGGACCAG...TAGAATCAGTGAGCTACTTGTCATGTCTGGCAAACACTGCACACATCCTCCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CAA 72 bp | AATCTTGTCCTTGCACCCTGCTTGGTAAACACTGGCTaGGAACCCAGATTACAAATATGCCTGGCAGGACCA | + |
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Preference number: 4 (lower is better) Translates to: NLVLAPCLVNTG*EPRLQICLAGP Trigger: TGGTCCTGCCAGGCATATTTGTAATCTGGGTTCCAAGCCAGTGTTTACCAAGCAGGGTGCAAGGACAAGATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS-3UTR GCA 90 bp | CCCCCACATGGTGGCTCACTTGTAAGTGGCTCTAAGGAACCCAAAATATCTCCTATTGATGTTGGCCTTTaGACTGGTCTCCATGAACTT | + |
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Preference number: 4 (lower is better) Translates to: PPHGGSLVSGSKEPKISPIDVGL*TGLHEL Trigger: AAGTTCATGGAGACCAGTGCAAAGGCCAACATCAAT...AGGAGATATTTTGGGTTCCTTAGAGCCACTTACAAGTGAGCCACCATGTGGGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CAA 72 bp | TCTACAACCTCTGGTAGGTGGTGGCTAGAAGGGAGGTaGAAGTGTTTAAGAACCCTTATTAAAGTAGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: STTSGRWWLEGR*KCLRTLIKVGF Trigger: AAAACCTACTTTAATAAGGGTTCTTAAACACTTCAACCTCCCTTCTAGCCACCACCTACCAGAGGTTGTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CAA 72 bp | TTCAGCTCCTACAGGAAGGATCTTAAGAGTGCCACTTaGTACAACTTTATAACCAGTGTTCACATCTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: FSSYRKDLKSAT*YNFITSVHILV Trigger: AACCAAGATGTGAACACTGGTTATAAAGTTGTACAAAGTGGCACTCTTAAGATCCTTCCTGTAGGAGCTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| 3UTR CAA 72 bp | CTGGTTTCTTTGGAAACTATTATATCAGATGATGTTTaGCTGAAGCAGACACGGGTTAAAGGATATTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: LVSLETIISDDV*LKQTRVKGYFV Trigger: AACAAAATATCCTTTAACCCGTGTCTGCTTCAGCAAAACATCATCTGATATAATAGTTTCCAAAGAAACCAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS-3UTR CAA 90 bp | CTGTGCCATGGAATGCTTGTCTGGGACTCAGGGACCAGGTGCCCTGTGGGCACATTTTCTCCCCGTTCCTaGGACACCTGTCTCTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: LCHGMLVWDSGTRCPVGTFSPRS*DTCLLS Trigger: TGACAAGAGACAGGTGTCCAAGGAACGGGGAGAAAA...TGTGCCCACAGGGCACCTGGTCCCTGAGTCCCAGACAAGCATTCCATGGCACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS-3UTR CAA 90 bp | CACTCCCCATCTTCCAGGCATCTTCCTCCAAACTATGAGGTGGGAGCTGTGACCTGCTCCACTGTGATCTaGACTCCATGGCTGCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: HSPSSRHLPPNYEVGAVTCSTVI*TPWLLP Trigger: GGGGAGCAGCCATGGAGTCAAGATCACAGTGGAGCA...GGTCACAGCTCCCACCTCATAGTTTGGAGGAAGATGCCTGGAAGATGGGGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS-3UTR CAA 90 bp | CTCCCACCAGGACATCAGTCCCAATCAGTCTCCCCAGGAGGACAGAGCTGTCACTTCTCCACATTGATGTaGGCCTTTGCACTGGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: LPPGHQSQSVSPGGQSCHFSTLM*AFALVS Trigger: GGAGACCAGTGCAAAGGCCAACATCAATGTGGAGAA...GTGACAGCTCTGTCCTCCTGGGGAGACTGATTGGGACTGATGTCCTGGTGGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS-3UTR CAA 90 bp | CAGGGACCAGGTGCCCTGTGGGCACAGGGCAGTCATTCTGGTTCCCAATTTCCCATCCAATTCCGGATGTaGTCAAAGGACTTCTCATTG | + |
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Preference number: 5 (lower is better) Translates to: QGPGALWAQGSHSGSQFPIQFRM*SKDFSL Trigger: CAATGAGAAGTCCTTTGACAACATCCGGAATTGGAT...GGGAAATTGGGAACCAGAATGACTGCCCTGTGCCCACAGGGCACCTGGTCCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS-3UTR CAA 90 bp | CGATTAGAGCCAGCCAGAGAAGATTGGGGAGGCGGTTTTGGTGCCACTGAGGCATTGGACACCTGTCTCTaGTCATTCACATCACACTTA | + |
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Preference number: 5 (lower is better) Translates to: RLEPAREDWGGGFGATEALDTCL*SFTSHL Trigger: TAAGTGTGATGTGAATGACAAGAGACAGGTGTCCAA...TGCCTCAGTGGCACCAAAACCGCCTCCCCAATCTTCTCTGGCTGGCTCTAATCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS-3UTR CAA 90 bp | GTAGGCAGTAAGAGCCAGAGGGGAGGATGTGTGCAGTGTTTGCCAGACATGACAAATGCATTCTCCACATaGATGTTGGCCTTTGCACTG | + |
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Preference number: 5 (lower is better) Translates to: VGSKSQRGGCVQCLPDMTNAFST*MLAFAL Trigger: CAGTGCAAAGGCCAACATCAATGTGGAGAATGCATT...TGTCATGTCTGGCAAACACTGCACACATCCTCCCCTCTGGCTCTTACTGCCTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS-3UTR CAA 90 bp | AAATCTTGTCCTTGCACCCTGCTTGGTAAACACTGGCTTGGAACCCAGATTACATGCAGTTTAATCCTCTaGCCATCGAGCTCTATGGTC | + |
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Preference number: 5 (lower is better) Translates to: KSCPCTLLGKHWLGTQITCSLIL*PSSSMV Trigger: GACCATAGAGCTCGATGGCAAGAGGATTAAACTGCA...TGTAATCTGGGTTCCAAGCCAGTGTTTACCAAGCAGGGTGCAAGGACAAGATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS-3UTR CAA 90 bp | AAATCTTGTCCTTGCACCCTGCTTGGTAAACACTGGCTTGGAACCCAGATTACATTGTCCATTTTTGCTTaGATATCCCTGGCAAGAGTG | + |
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Preference number: 5 (lower is better) Translates to: KSCPCTLLGKHWLGTQITLSIFA*ISLARV Trigger: CACTCTTGCCAGGGATATCAAAGCAAAAATGGACAA...TGTAATCTGGGTTCCAAGCCAGTGTTTACCAAGCAGGGTGCAAGGACAAGATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS CAA 72 bp | AAGAAGCTGGTCCTCTTCTGCTGCTCCACTGTGATCTaGACTCCATGGCTGCTCCCCTGCGGGCTGTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: KKLVLFCCSTVI*TPWLLPCGLFP Trigger: AGGGAACAGCCCGCAGGGGAGCAGCCATGGAGTCAAGATCACAGTGGAGCAGCAGAAGAGGACCAGCTTCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS CAA 90 bp | CTGCACCGGAAGAAGCTGGTCCTCTTCTGCTGCTCCACTGTGATCTaGACTCCATGGCTGCTCCCCTGCGGGCTGTTCCCTTCCAATTTT | + |
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Preference number: 6 (lower is better) Translates to: LHRKKLVLFCCSTVI*TPWLLPCGLFPSNF Trigger: AAAATTGGAAGGGAACAGCCCGCAGGGGAGCAGCCATGGAGTCAAGATCACAGTGGAGCAGCAGAAGAGGACCAGCTTCTTCCGGTGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS CCA 72 bp | TCCCATAGTCGAGTGCCAGCTTTTCTCCCCGTTCCTTaGACACCTGTCTCTTGTCATTCACATCACACTTAT | + |
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Preference number: 6 (lower is better) Translates to: SHSRVPAFLPVP*TPVSCHSHHTY Trigger: ATAAGTGTGATGTGAATGACAAGAGACAGGTGTCCAAGGAACGGGGAGAAAAGCTGGCACTCGACTATGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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| CDS GCA 72 bp | AGTGAAAAATGCATTCTCCACATTGATGTTGGCCTTTaGACTGGTCTCCATGAACTTGATCCCATAGTCGAG | + |
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Preference number: 6 (lower is better) Translates to: SEKCILHIDVGL*TGLHELDPIVE Trigger: CTCGACTATGGGATCAAGTTCATGGAGACCAGTGCAAAGGCCAACATCAATGTGGAGAATGCATTTTTCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003121.9 |
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