Pregenerated sensors for RAB6A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030704Ensembl transcript IDs: ENSMUST00000032946.10, ENSMUST00000098252.5, ENSMUST00000107048.8
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATTTTGGACATTGTGGCTCATAGCCTGGAGCTGTCTGTAAAACTATaGATAATTTCAAAGGGCTGGGTTAGACTGCGGTTTGCCATGTCT | + |
|
Preference number: 1 (lower is better) Translates to: ILDIVAHSLELSVKL*IISKGWVRLRFAMS Trigger: AGACATGGCAAACCGCAGTCTAACCCAGCCCTTTGAAATTATCCATAGTTTTACAGACAGCTCCAGGCTATGAGCCACAATGTCCAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR TCA 90 bp | TTGAGAAAGGGAAGAACAGGGAAGGCGAAAAGGAAGAGGCAAGAAAGGCTGATAATGGGGCCAAAGCAGTaGGCTTCTGCAGGAGGGTTG | + |
|
Preference number: 2 (lower is better) Translates to: LRKGRTGKAKRKRQERLIMGPKQ*ASAGGL Trigger: CAACCCTCCTGCAGAAGCTCACTGCTTTGGCCCCAT...TATCAGCCTTTCTTGCCTCTTCCTTTTCGCCTTCCCTGTTCTTCCCTTTCTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR CCA 90 bp | GAAAGGCTGATAGACAGCAAGAAGGCAGGCAACGCTGCTATGAACACGCTGCTCGTCAATGAAAGAGTATaGGGCCAAAGCAGTGAGCTT | + |
|
Preference number: 2 (lower is better) Translates to: ERLIDSKKAGNAAMNTLLVNERV*GQSSEL Trigger: AAGCTCACTGCTTTGGCCCCATACTCTTTCATTGAC...GAGCAGCGTGTTCATAGCAGCGTTGCCTGCCTTCTTGCTGTCTATCAGCCTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR TCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCATGGGGCCAAAGCAGTaGGCTTCTGCAGGAGGGTTG | + |
|
Preference number: 2 (lower is better) Translates to: HTSSDLPLGTSKDIISIFMGPKQ*ASAGGL Trigger: CAACCCTCCTGCAGAAGCTCACTGCTTTGGCCCCAT...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR TCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCCAGCACTGCCCATCATaGGAGCAACAGCTGAGTTCT | + |
|
Preference number: 2 (lower is better) Translates to: HTSSDLPLGTSKDIISIFQHCPS*EQQLSS Trigger: AGAACTCAGCTGTTGCTCTCATGATGGGCAGTGCTG...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR GCA 90 bp | TTGAGAAAGGGAAGAACAGGGAAGGCGAAAAGGAAGAGGCAAGAAAGGCTGATAAAAGCAGTGAGCTTCTaGAGGAGGGTTGAAAGATGC | + |
|
Preference number: 2 (lower is better) Translates to: LRKGRTGKAKRKRQERLIKAVSF*RRVERC Trigger: GCATCTTTCAACCCTCCTGCAGAAGCTCACTGCTTT...TATCAGCCTTTCTTGCCTCTTCCTTTTCGCCTTCCCTGTTCTTCCCTTTCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR GCA 90 bp | GAAAGGCTGATAGACAGCAAGAAGGCAGGCAACGCTGCTATGAACACGCTGCTCAAGTTATCACGAGTATaGTGGAATTGTTTGGCTTTT | + |
|
Preference number: 2 (lower is better) Translates to: ERLIDSKKAGNAAMNTLLKLSRV*WNCLAF Trigger: AAAAGCCAAACAATTCCAGCATACTCGTGATAACTT...GAGCAGCGTGTTCATAGCAGCGTTGCCTGCCTTCTTGCTGTCTATCAGCCTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR GCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCAAAGCAGTGAGCTTCTaGAGGAGGGTTGAAAGATGC | + |
|
Preference number: 2 (lower is better) Translates to: HTSSDLPLGTSKDIISIFKAVSF*RRVERC Trigger: GCATCTTTCAACCCTCCTGCAGAAGCTCACTGCTTT...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR TCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCCTCGTGGACTCATTTTaGAGACATACCAGAACCCTT | + |
|
Preference number: 2 (lower is better) Translates to: HTSSDLPLGTSKDIISIFLVDSF*RHTRTL Trigger: AAGGGTTCTGGTATGTCTTCAAAATGAGTCCACGAG...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR CCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCGTCAATGAAAGAGTATaGGGCCAAAGCAGTGAGCTT | + |
|
Preference number: 2 (lower is better) Translates to: HTSSDLPLGTSKDIISIFVNERV*GQSSEL Trigger: AAGCTCACTGCTTTGGCCCCATACTCTTTCATTGAC...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR TCA 90 bp | TTGAGAAAGGGAAGAACAGGGAAGGCGAAAAGGAAGAGGCAAGAAAGGCTGATACCACACACATACTGCTaGGATTTTCATCATTTTAAG | + |
|
Preference number: 2 (lower is better) Translates to: LRKGRTGKAKRKRQERLIPHTYC*DFHHFK Trigger: CTTAAAATGATGAAAATCTCAGCAGTATGTGTGTGG...TATCAGCCTTTCTTGCCTCTTCCTTTTCGCCTTCCCTGTTCTTCCCTTTCTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR TCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCAAGGGACACCTGTTCTaGTCAGAAAGACATCTTATA | + |
|
Preference number: 2 (lower is better) Translates to: HTSSDLPLGTSKDIISIFKGHLF*SERHLI Trigger: TATAAGATGTCTTTCTGATCAGAACAGGTGTCCCTT...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR TCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCCCACACACATACTGCTaGGATTTTCATCATTTTAAG | + |
|
Preference number: 2 (lower is better) Translates to: HTSSDLPLGTSKDIISIFPHTYC*DFHHFK Trigger: CTTAAAATGATGAAAATCTCAGCAGTATGTGTGTGG...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR CCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCCTGTCTGTAAAACTATaGATAATTTCAAAGGGCTGG | + |
|
Preference number: 2 (lower is better) Translates to: HTSSDLPLGTSKDIISIFLSVKL*IISKGW Trigger: CCAGCCCTTTGAAATTATCCATAGTTTTACAGACAG...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR GCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCAACTCATGTTTACAATaGCTTGTCTACCTAGCATTT | + |
|
Preference number: 2 (lower is better) Translates to: HTSSDLPLGTSKDIISIFNSCLQ*LVYLAF Trigger: AAATGCTAGGTAGACAAGGCATTGTAAACATGAGTT...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR CAA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCATGGTTCAGAAGTACTaGGCTACTTTTCCCTCCCAG | + |
|
Preference number: 3 (lower is better) Translates to: HTSSDLPLGTSKDIISIFMVQKY*ATFPSQ Trigger: CTGGGAGGGAAAAGTAGCCAAGTACTTCTGAACCAT...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR CCA 72 bp | ATTGTGGCTCATAGCCTGGAGCTGTCTGTAAAACTATaGATAATTTCAAAGGGCTGGGTTAGACTGCGGTTT | + |
|
Preference number: 3 (lower is better) Translates to: IVAHSLELSVKL*IISKGWVRLRF Trigger: AAACCGCAGTCTAACCCAGCCCTTTGAAATTATCCATAGTTTTACAGACAGCTCCAGGCTATGAGCCACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR CAA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCCCATGTCTTGTTTGTTaGAGAAAGGGAAGAACAGGG | + |
|
Preference number: 3 (lower is better) Translates to: HTSSDLPLGTSKDIISIFPCLVC*RKGRTG Trigger: CCCTGTTCTTCCCTTTCTCAAACAAACAAGACATGG...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR CAA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCACTCGTGGACTCATTTaGAAGACATACCAGAACCCT | + |
|
Preference number: 3 (lower is better) Translates to: HTSSDLPLGTSKDIISIFTRGLI*KTYQNP Trigger: AGGGTTCTGGTATGTCTTCAAAATGAGTCCACGAGT...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR-3UTR CAA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCTTTGCCATGTCTTGTTaGTTTGAGAAAGGGAAGAAC | + |
|
Preference number: 3 (lower is better) Translates to: HTSSDLPLGTSKDIISIFFAMSC*FEKGKN Trigger: GTTCTTCCCTTTCTCAAACAAACAAGACATGGCAAA...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR TCA 72 bp | GAGTCTAGTAAAGCTCATGTGAAGGGACACCTGTTCTaGTCAGAAAGACATCTTATATTCATTCCTTTACCT | + |
|
Preference number: 3 (lower is better) Translates to: ESSKAHVKGHLF*SERHLIFIPLP Trigger: AGGTAAAGGAATGAATATAAGATGTCTTTCTGATCAGAACAGGTGTCCCTTCACATGAGCTTTACTAGACTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| CDS-3UTR GCA 90 bp | GAAAGGCTGATAGACAGCAAGAAGGCAGGCAACGCTGCTATGAACACGCTGCTCGCAGTATCCCACAGCTaGAGCCTGATGGTTCTATCC | + |
|
Preference number: 4 (lower is better) Translates to: ERLIDSKKAGNAAMNTLLAVSHS*SLMVLS Trigger: GGATAGAACCATCAGGCTGCAGCTGTGGGATACTGC...GAGCAGCGTGTTCATAGCAGCGTTGCCTGCCTTCTTGCTGTCTATCAGCCTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| CDS-3UTR TCA 90 bp | GAAAGGCTGATAGACAGCAAGAAGGCAGGCAACGCTGCTATGAACACGCTGCTCGGATGTAACTGGGAATaGGGCTACGGAAACGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: ERLIDSKKAGNAAMNTLLGCNWE*GYGNVP Trigger: AGGAACGTTTCCGTAGCCTCATTCCCAGTTACATCC...GAGCAGCGTGTTCATAGCAGCGTTGCCTGCCTTCTTGCTGTCTATCAGCCTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| CDS-3UTR TCA 90 bp | TTGAGAAAGGGAAGAACAGGGAAGGCGAAAAGGAAGAGGCAAGAAAGGCTGATAAACAGCCGCCTTCATTaGCTGGTTGCTCCTGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: LRKGRTGKAKRKRQERLINSRLH*LVAPEA Trigger: AGCCTCAGGAGCAACCAGTCAATGAAGGCGGCTGTT...TATCAGCCTTTCTTGCCTCTTCCTTTTCGCCTTCCCTGTTCTTCCCTTTCTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| CDS-3UTR TCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCAACAGCCGCCTTCATTaGCTGGTTGCTCCTGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: HTSSDLPLGTSKDIISIFNSRLH*LVAPEA Trigger: AGCCTCAGGAGCAACCAGTCAATGAAGGCGGCTGTT...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| CDS-3UTR TCA 90 bp | TTGAGAAAGGGAAGAACAGGGAAGGCGAAAAGGAAGAGGCAAGAAAGGCTGATAGGATGTAACTGGGAATaGGGCTACGGAAACGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LRKGRTGKAKRKRQERLIGCNWE*GYGNVP Trigger: AGGAACGTTTCCGTAGCCTCATTCCCAGTTACATCC...TATCAGCCTTTCTTGCCTCTTCCTTTTCGCCTTCCCTGTTCTTCCCTTTCTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| CDS-3UTR GCA 90 bp | TTGAGAAAGGGAAGAACAGGGAAGGCGAAAAGGAAGAGGCAAGAAAGGCTGATATGCTTCTGTCCTGTGTaGTTTCCATTCCAGGTAAAG | + |
|
Preference number: 4 (lower is better) Translates to: LRKGRTGKAKRKRQERLICFCPV*FPFQVK Trigger: CTTTACCTGGAATGGAAAGCACACAGGACAGAAGCA...TATCAGCCTTTCTTGCCTCTTCCTTTTCGCCTTCCCTGTTCTTCCCTTTCTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| CDS-3UTR GCA 90 bp | TTGAGAAAGGGAAGAACAGGGAAGGCGAAAAGGAAGAGGCAAGAAAGGCTGATAATCATAAACAACAACTaGCACAGTGGAGTCTCGAAT | + |
|
Preference number: 4 (lower is better) Translates to: LRKGRTGKAKRKRQERLIIINNN*HSGVSN Trigger: ATTCGAGACTCCACTGTGGCAGTTGTTGTTTATGAT...TATCAGCCTTTCTTGCCTCTTCCTTTTCGCCTTCCCTGTTCTTCCCTTTCTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032946.10 |
||
| CDS-3UTR GCA 90 bp | CATACTTCCTCTGACCTGCCTCTAGGGACTTCCAAGGATATTATTTCCATATTCTGCTTCTGTCCTGTGTaGTTTCCATTCCAGGTAAAG | + |
|
Preference number: 4 (lower is better) Translates to: HTSSDLPLGTSKDIISIFCFCPV*FPFQVK Trigger: CTTTACCTGGAATGGAAAGCACACAGGACAGAAGCA...GAATATGGAAATAATATCCTTGGAAGTCCCTAGAGGCAGGTCAGAGGAAGTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||
| 3UTR CAA 72 bp | TTCAAATTTGAACCCATGTCCAGAGCAGAAGGGTATTaGCTATTCTGTGAGGGTACTTTAGTTGTTAAACTT | + |
|
Preference number: 4 (lower is better) Translates to: FKFEPMSRAEGY*LFCEGTLVVKL Trigger: AAGTTTAACAACTAAAGTACCCTCACAGAATAGCAAATACCCTTCTGCTCTGGACATGGGTTCAAATTTGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032946.10 ENSMUST00000098252.5 ENSMUST00000107048.8 |
||