Pregenerated sensors for RAB5IF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027637Ensembl transcript IDs: ENSMUST00000029165.4
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAATGGACAAATTCAGAAATGCTTCCCCAAAGGCGGATGGTTCTTTaGAAAGTTTCACAACCCTTGCGGAAAATACTGATGTCCAACACG | + |
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Preference number: 1 (lower is better) Translates to: QWTNSEMLPQRRMVL*KVSQPLRKILMSNT Trigger: CGTGTTGGACATCAGTATTTTCCGCAAGGGTTGTGAAACTTTTCAAAGAACCATCCGCCTTTGGGGAAGCATTTCTGAATTTGTCCATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR GCA 90 bp | ATTGTACCATGGACCACACACATGGTGTTTTCAGAAGACTTGAGATaGAGTGATGGTTTAAAAACTGTACACCTGACGGAGAACCAAGGA | + |
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Preference number: 1 (lower is better) Translates to: IVPWTTHMVFSEDLR*SDGLKTVHLTENQG Trigger: TCCTTGGTTCTCCGTCAGGTGTACAGTTTTTAAACCATCACTGCATCTCAAGTCTTCTGAAAACACCATGTGTGTGGTCCATGGTACAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR CCA 90 bp | TTTATTCAAGTTTCTGAAAACATCCTACAATGGAGACTTATTAGATaGCTGCTTGTATTGTACCATGGACCACACACATGGTGTTTTCAG | + |
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Preference number: 1 (lower is better) Translates to: FIQVSENILQWRLIR*LLVLYHGPHTWCFQ Trigger: CTGAAAACACCATGTGTGTGGTCCATGGTACAATACAAGCAGCCATCTAATAAGTCTCCATTGTAGGATGTTTTCAGAAACTTGAATAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR CAA 90 bp | AGGAGACGTGGGTCTTCCCGGTTCCACGCGGCAGGAGTGCCCCAATaGGCATGTACCTGTGCTGTAGTAAAAGGGTCCTTCGGACTGGAC | + |
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Preference number: 2 (lower is better) Translates to: RRRGSSRFHAAGVPQ*ACTCAVVKGSFGLD Trigger: GTCCAGTCCGAAGGACCCTTTTACTACAGCACAGGTACATGCCAATTGGGGCACTCCTGCCGCGTGGAACCGGGAAGACCCACGTCTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR-3UTR CCA 90 bp | CCAAGGAAGACAATGTTTCATCCGGATCCAGAGGCGCATCAAATTCAACAGCAGTTCCCCAAAGGCGGATaGTTCTTTGAAAAGTTTCAC | + |
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Preference number: 2 (lower is better) Translates to: PRKTMFHPDPEAHQIQQQFPKGG*FFEKFH Trigger: GTGAAACTTTTCAAAGAACCATCCGCCTTTGGGGAA...CTGCTGTTGAATTTGATGCGCCTCTGGATCCGGATGAAACATTGTCTTCCTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR-3UTR TCA 90 bp | GAAGACTTGAGATGCAGTGATGGTTTAAAAACTGTACACCTGACGGAGAACCAAAGGCGGATGGTTCTTTaGAAAGTTTCACAACCCTTG | + |
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Preference number: 2 (lower is better) Translates to: EDLRCSDGLKTVHLTENQRRMVL*KVSQPL Trigger: CAAGGGTTGTGAAACTTTTCAAAGAACCATCCGCCT...TTGGTTCTCCGTCAGGTGTACAGTTTTTAAACCATCACTGCATCTCAAGTCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR-3UTR TCA 90 bp | GAAGACTTGAGATGCAGTGATGGTTTAAAAACTGTACACCTGACGGAGAACCAACCAAGGAAAAACAGTTaGCAATGGACAAATTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: EDLRCSDGLKTVHLTENQPRKNS*QWTNSE Trigger: TTCTGAATTTGTCCATTGTCAACTGTTTTTCCTTGG...TTGGTTCTCCGTCAGGTGTACAGTTTTTAAACCATCACTGCATCTCAAGTCTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR-3UTR CAA 90 bp | AGATGGCTGCTTGTATTGTACCATGGACCACACACATGGTGTTTTCAGAAGACTAAAGTTTCACAACCCTaGCGGAAAATACTGATGTCC | + |
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Preference number: 3 (lower is better) Translates to: RWLLVLYHGPHTWCFQKTKVSQP*RKILMS Trigger: GGACATCAGTATTTTCCGCAAGGGTTGTGAAACTTT...AGTCTTCTGAAAACACCATGTGTGTGGTCCATGGTACAATACAAGCAGCCATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR-3UTR CAA 90 bp | CCAAGGAAGACAATGTTTCATCCGGATCCAGAGGCGCATCAAATTCAACAGCAGTCCAAGGAAAAACAGTaGACAATGGACAAATTCAGA | + |
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Preference number: 3 (lower is better) Translates to: PRKTMFHPDPEAHQIQQQSKEKQ*TMDKFR Trigger: TCTGAATTTGTCCATTGTCAACTGTTTTTCCTTGGA...CTGCTGTTGAATTTGATGCGCCTCTGGATCCGGATGAAACATTGTCTTCCTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR TCA 72 bp | AATTCAGAAATGCTTCCCCAAAGGCGGATGGTTCTTTaGAAAGTTTCACAACCCTTGCGGAAAATACTGATG | + |
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Preference number: 3 (lower is better) Translates to: NSEMLPQRRMVL*KVSQPLRKILM Trigger: CATCAGTATTTTCCGCAAGGGTTGTGAAACTTTTCAAAGAACCATCCGCCTTTGGGGAAGCATTTCTGAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR CCA 72 bp | GTTTCTGAAAACATCCTACAATGGAGACTTATTAGATaGCTGCTTGTATTGTACCATGGACCACACACATGG | + |
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Preference number: 3 (lower is better) Translates to: VSENILQWRLIR*LLVLYHGPHTW Trigger: CCATGTGTGTGGTCCATGGTACAATACAAGCAGCCATCTAATAAGTCTCCATTGTAGGATGTTTTCAGAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR CAA 72 bp | GGGTCTTCCCGGTTCCACGCGGCAGGAGTGCCCCAATaGGCATGTACCTGTGCTGTAGTAAAAGGGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: GSSRFHAAGVPQ*ACTCAVVKGSF Trigger: GAAGGACCCTTTTACTACAGCACAGGTACATGCCAATTGGGGCACTCCTGCCGCGTGGAACCGGGAAGACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS-3UTR TCA 90 bp | CGGAGAACCAAGGAAGACAATGTTTCATCCGGATCCAGAGGCGCATCAAATTCACCAAAACCAGAGCGATaGTCTGTCGGAACCAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: RRTKEDNVSSGSRGASNSPKPER*SVGTSR Trigger: TCTACTGGTTCCGACAGATCATCGCTCTGGTTTTGG...TGAATTTGATGCGCCTCTGGATCCGGATGAAACATTGTCTTCCTTGGTTCTCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR CAA 72 bp | TCACAACCCTTGCGGAAAATACTGATGTCCAACACGTaGATTCTAAGTTCAGGAGACGTGGGTCTTCCCGGT | + |
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Preference number: 4 (lower is better) Translates to: SQPLRKILMSNT*ILSSGDVGLPG Trigger: ACCGGGAAGACCCACGTCTCCTGAACTTAGAATCAACGTGTTGGACATCAGTATTTTCCGCAAGGGTTGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS-3UTR TCA 90 bp | TTGAGATGCAGTGATGGTTTAAAAACTGTACACCTGACGGAGAACCAAGGAAGAACAGAACTCCTGCATTaGTCAGGCAGAATCCTGCTA | + |
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Preference number: 4 (lower is better) Translates to: LRCSDGLKTVHLTENQGRTELLH*SGRILL Trigger: TAGCAGGATTCTGCCTGATCAATGCAGGAGTTCTGT...TCTTCCTTGGTTCTCCGTCAGGTGTACAGTTTTTAAACCATCACTGCATCTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS-3UTR GCA 90 bp | AGATGGCTGCTTGTATTGTACCATGGACCACACACATGGTGTTTTCAGAAGACTGAGATACAGAACTCCTaGATTGATCAGGCAGAATCC | + |
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Preference number: 4 (lower is better) Translates to: RWLLVLYHGPHTWCFQKTEIQNS*IDQAES Trigger: GGATTCTGCCTGATCAATGCAGGAGTTCTGTATCTC...AGTCTTCTGAAAACACCATGTGTGTGGTCCATGGTACAATACAAGCAGCCATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS-3UTR TCA 90 bp | GAAGACAATGTTTCATCCGGATCCAGAGGCGCATCAAATTCAACAGCAGCTCCACATGAACAAGGCAAATaGTGTCATAAAGCCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: EDNVSSGSRGASNSTAAPHEQGK*CHKAFF Trigger: AAAGAAGGCTTTATGACATCATTTGCCTTGTTCATG...TGGAGCTGCTGTTGAATTTGATGCGCCTCTGGATCCGGATGAAACATTGTCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR CAA 72 bp | ATCCTACAATGGAGACTTATTAGATGGCTGCTTGTATaGTACCATGGACCACACACATGGTGTTTTCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: ILQWRLIRWLLV*YHGPHTWCFQK Trigger: CTTCTGAAAACACCATGTGTGTGGTCCATGGTACAATACAAGCAGCCATCTAATAAGTCTCCATTGTAGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| 3UTR CAA 72 bp | AAAACATCCTACAATGGAGACTTATTAGATGGCTGCTaGTATTGTACCATGGACCACACACATGGTGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: KTSYNGDLLDGC*YCTMDHTHGVF Trigger: GAAAACACCATGTGTGTGGTCCATGGTACAATACAAGCAGCCATCTAATAAGTCTCCATTGTAGGATGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS-3UTR CAA 90 bp | AAAACAGTTGACAATGGACAAATTCAGAAATGCTTCCCCAAAGGCGGATGGTTCCTCCACACGGACACCTaGAGGGCCCCGTTGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: KTVDNGQIQKCFPKGGWFLHTDT*RAPLAS Trigger: GCTGGCCAACGGGGCCCTCAAGGTGTCCGTGTGGAG...GAACCATCCGCCTTTGGGGAAGCATTTCTGAATTTGTCCATTGTCAACTGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS-3UTR CAA 90 bp | TGCTTGTATTGTACCATGGACCACACACATGGTGTTTTCAGAAGACTTGAGATGTCGCTCCGCAGCACCTaGCTCCACACGGACACCTTG | + |
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Preference number: 5 (lower is better) Translates to: CLYCTMDHTHGVFRRLEMSLRST*LHTDTL Trigger: CAAGGTGTCCGTGTGGAGCAAGGTGCTGCGGAGCGA...CATCTCAAGTCTTCTGAAAACACCATGTGTGTGGTCCATGGTACAATACAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS-3UTR CAA 90 bp | CGGAGAACCAAGGAAGACAATGTTTCATCCGGATCCAGAGGCGCATCAAATTCAGTCATAAAGCCTTCTTaGGTGAGCTCCCACGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: RRTKEDNVSSGSRGASNSVIKPS*VSSHVP Trigger: GGGCACGTGGGAGCTCACCAAAGAAGGCTTTATGAC...TGAATTTGATGCGCCTCTGGATCCGGATGAAACATTGTCTTCCTTGGTTCTCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS-3UTR CAA 90 bp | CGGAGAACCAAGGAAGACAATGTTTCATCCGGATCCAGAGGCGCATCAAATTCATACAGAACTCCTGCATaGATCAGGCAGAATCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: RRTKEDNVSSGSRGASNSYRTPA*IRQNPA Trigger: AGCAGGATTCTGCCTGATCAATGCAGGAGTTCTGTA...TGAATTTGATGCGCCTCTGGATCCGGATGAAACATTGTCTTCCTTGGTTCTCCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS CAA 90 bp | AAAAATTCATCCTTGTCGTCCCAGGCCGCGTCGCTCCGCAGCACCTaGCTCCACACGGACACCTTGAGGGCCCCGTTGGCCAGCTGCGGC | + |
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Preference number: 6 (lower is better) Translates to: KNSSLSSQAASLRST*LHTDTLRAPLASCG Trigger: GCCGCAGCTGGCCAACGGGGCCCTCAAGGTGTCCGTGTGGAGCAAGGTGCTGCGGAGCGACGCGGCCTGGGACGACAAGGATGAATTTTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS CAA 72 bp | ACCATGAACAAGGCAAATGATGTCATAAAGCCTTCTTaGGTGAGCTCCCACGTGCCCCCATATTCTTCCTCG | + |
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Preference number: 6 (lower is better) Translates to: TMNKANDVIKPS*VSSHVPPYSSS Trigger: CGAGGAAGAATATGGGGGCACGTGGGAGCTCACCAAAGAAGGCTTTATGACATCATTTGCCTTGTTCATGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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| CDS CAA 90 bp | ATCCAAATGACCATGAACAAGGCAAATGATGTCATAAAGCCTTCTTaGGTGAGCTCCCACGTGCCCCCATATTCTTCCTCGTCGATTTGT | + |
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Preference number: 6 (lower is better) Translates to: IQMTMNKANDVIKPS*VSSHVPPYSSSSIC Trigger: ACAAATCGACGAGGAAGAATATGGGGGCACGTGGGAGCTCACCAAAGAAGGCTTTATGACATCATTTGCCTTGTTCATGGTCATTTGGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029165.4 |
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