Pregenerated sensors for RAB5C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019173Ensembl transcript IDs: ENSMUST00000019317.12, ENSMUST00000107364.8, ENSMUST00000155500.2, ENSMUST00000155843.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGGGAAGAGCAGCCTGTCCCTTCCCCAGCTCAGGGCCTGCCCACTaGCCCAGCCTAAGACGCTCCCAACAAGTTAAGATGTGGGTGCTC | + |
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Preference number: 1 (lower is better) Translates to: EGRAACPFPSSGPAH*PSLRRSQQVKMWVL Trigger: GAGCACCCACATCTTAACTTGTTGGGAGCGTCTTAGGCTGGGGCAGTGGGCAGGCCCTGAGCTGGGGAAGGGACAGGCTGCTCTTCCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR TCA 90 bp | ACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTTGGTTACCATaGCCACCAGCATCCTCTCACACACAGGGAGTAGAGCCATTTAAT | + |
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Preference number: 1 (lower is better) Translates to: TIRTTNSRASFFWLP*PPASSHTQGVEPFN Trigger: ATTAAATGGCTCTACTCCCTGTGTGTGAGAGGATGCTGGTGGTCATGGTAACCAAAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR TCA 90 bp | AGGGTGACTGCTCCAAGCCCTGTCCCCACGGATGAGGAGCACAGGAGCATGGCTTATGCGGAGAATTCTTaGTGGACCCTTCCCCTGCCC | + |
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Preference number: 2 (lower is better) Translates to: RVTAPSPVPTDEEHRSMAYAENS*WTLPLP Trigger: GGGCAGGGGAAGGGTCCATCAAGAATTCTCCGCATA...AGCCATGCTCCTGTGCTCCTCATCCGTGGGGACAGGGCTTGGAGCAGTCACCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR TCA 90 bp | AGCTCAGGGCCTGCCCACTGCCCCAGCCTAAGACGCTCCCAACAAGTTAAGATGTATGCGGAGAATTCTTaGTGGACCCTTCCCCTGCCC | + |
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Preference number: 2 (lower is better) Translates to: SSGPAHCPSLRRSQQVKMYAENS*WTLPLP Trigger: GGGCAGGGGAAGGGTCCATCAAGAATTCTCCGCATA...CATCTTAACTTGTTGGGAGCGTCTTAGGCTGGGGCAGTGGGCAGGCCCTGAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGAGGCCCTGCCCCCAGTGGTaGCCCGAGTTGTTAAGTGCG | + |
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Preference number: 2 (lower is better) Translates to: RKNREATYGLISCQRRTRPCPQW*PELLSA Trigger: CGCACTTAACAACTCGGGCCACCACTGGGGGCAGGG...CCTCGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGAGGCCAGCAAAGGGCAAGTaGGGGAGCGGGAGAAAGGGA | + |
|
Preference number: 2 (lower is better) Translates to: RKNREATYGLISCQRRTRPAKGK*GSGRKG Trigger: TCCCTTTCTCCCGCTCCCCCACTTGCCCTTTGCTGG...CCTCGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR TCA 90 bp | CAACAGCAGGGCTTCTTTCTTTTGGTTACCATGACCACCAGCATCCTCTCACACAGCCAGAGGTCAGAGTaGCCAAGGGTGGAGGGATCC | + |
|
Preference number: 2 (lower is better) Translates to: QQQGFFLLVTMTTSILSHSQRSE*PRVEGS Trigger: GGATCCCTCCACCCTTGGTCACTCTGACCTCTGGCT...GTGTGAGAGGATGCTGGTGGTCATGGTAACCAAAAGAAAGAAGCCCTGCTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR CCA 90 bp | TTCAGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGTTCCCCTGCCCCCAGTaGTGGCCCGAGTTGTTAAGT | + |
|
Preference number: 2 (lower is better) Translates to: FRKNREATYGLISCQRRTFPCPQ*WPELLS Trigger: ACTTAACAACTCGGGCCACCACTGGGGGCAGGGGAA...CGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCTGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR TCA 90 bp | TCAGTCCTATCCTCTTCCACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTAGCCAGAGGTCAGAGTaGCCAAGGGTGGAGGGATCC | + |
|
Preference number: 2 (lower is better) Translates to: SVLSSSTIRTTNSRASFFSQRSE*PRVEGS Trigger: GGATCCCTCCACCCTTGGTCACTCTGACCTCTGGCT...AAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGTGGAAGAGGATAGGACTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGTCCTATCCTCTTCCACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTGGAAGAAAGGGTGACTaGTCCAAGCCCTGTCCCCAC | + |
|
Preference number: 2 (lower is better) Translates to: SVLSSSTIRTTNSRASFFGRKGD*SKPCPH Trigger: GTGGGGACAGGGCTTGGAGCAGTCACCCTTTCTTCC...AAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGTGGAAGAGGATAGGACTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR CAA 90 bp | ATCCTCTTCCACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTaGGTTACCATGACCACCAGCATCCTCTCACACACAGGGAGTAGA | + |
|
Preference number: 2 (lower is better) Translates to: ILFHHQNYQQQGFFL*VTMTTSILSHTGSR Trigger: TCTACTCCCTGTGTGTGAGAGGATGCTGGTGGTCATGGTAACCAAAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGTGGAAGAGGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR CCA 90 bp | TCAGTCCTATCCTCTTCCACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTACAGAAAGGTGCAGGTaGAATAACTCCCTCCGGCCT | + |
|
Preference number: 2 (lower is better) Translates to: SVLSSSTIRTTNSRASFFTERCR*NNSLRP Trigger: AGGCCGGAGGGAGTTATTCCACCTGCACCTTTCTGT...AAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGTGGAAGAGGATAGGACTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR CAA 90 bp | AGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGAGGATTCCAGTCGGGTCATaGTGGTGGAGGAGTGGGGGC | + |
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Preference number: 3 (lower is better) Translates to: RKNREATYGLISCQRRTRIPVGS*WWRSGG Trigger: GCCCCCACTCCTCCACCACAATGACCCGACTGGAAT...CCTCGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR-3UTR CAA 90 bp | TTCAGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGATTCCAGTCGGGTCATaGTGGTGGAGGAGTGGGGGC | + |
|
Preference number: 3 (lower is better) Translates to: FRKNREATYGLISCQRRTIPVGS*WWRSGG Trigger: GCCCCCACTCCTCCACCACAATGACCCGACTGGAAT...CGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCTGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR TCA 72 bp | TTAACTTCAGGAAAAACAGAGAGGCTACGTATGGCCTaGTCAGCTGCCAGAGAAGGACGAGGAAGACAAGCG | + |
|
Preference number: 3 (lower is better) Translates to: LTSGKTERLRMA*SAAREGRGRQA Trigger: CGCTTGTCTTCCTCGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCTGAAGTTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR TCA 90 bp | AGGGTGACTGCTCCAAGCCCTGTCCCCACGGATGAGGAGCACAGGAGCATGGCTTCCCCGCTAGTGCAATaGCGATGTTGGGGCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: RVTAPSPVPTDEEHRSMASPLVQ*RCWGWP Trigger: AGGCCAGCCCCAACATCGTCATTGCACTAGCGGGGA...AGCCATGCTCCTGTGCTCCTCATCCGTGGGGACAGGGCTTGGAGCAGTCACCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | GGGCCTGCCCACTGCCCCAGCCTAAGACGCTCCCAACAAGTTAAGATGTGGGTGTCCGGCTGGCTGGGTTaGTCTCCTGCAGATCCACAC | + |
|
Preference number: 4 (lower is better) Translates to: GPAHCPSLRRSQQVKMWVSGWLG*SPADPH Trigger: GTGTGGATCTGCAGGAGAGCAACCCAGCCAGCCGGA...CACCCACATCTTAACTTGTTGGGAGCGTCTTAGGCTGGGGCAGTGGGCAGGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR TCA 90 bp | GGGCCTGCCCACTGCCCCAGCCTAAGACGCTCCCAACAAGTTAAGATGTGGGTGGGCAGATGGCAGGGCTaGAACTCCACAGCTCTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: GPAHCPSLRRSQQVKMWVGRWQG*NSTALL Trigger: CAAGAGAGCTGTGGAGTTTCAGCCCTGCCATCTGCC...CACCCACATCTTAACTTGTTGGGAGCGTCTTAGGCTGGGGCAGTGGGCAGGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019317.12 |
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| CDS-3UTR GCA 90 bp | AGCTCAGGGCCTGCCCACTGCCCCAGCCTAAGACGCTCCCAACAAGTTAAGATGGCTGGGTTGCTCTCCTaGAGATCCACACCTCTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: SSGPAHCPSLRRSQQVKMAGLLS*RSTPLV Trigger: AACCAGAGGTGTGGATCTGCAGGAGAGCAACCCAGC...CATCTTAACTTGTTGGGAGCGTCTTAGGCTGGGGCAGTGGGCAGGCCCTGAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR CCA 90 bp | AGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGAGGCTGGCTCCGGCTGGCTaGGTTGCTCTCCTGCAGATC | + |
|
Preference number: 4 (lower is better) Translates to: RKNREATYGLISCQRRTRLAPAG*VALLQI Trigger: GATCTGCAGGAGAGCAACCCAGCCAGCCGGAGCCAG...CCTCGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR TCA 90 bp | AGGGTGACTGCTCCAAGCCCTGTCCCCACGGATGAGGAGCACAGGAGCATGGCTAGGACCAGCTTAAACTaGCAGATCTTGTTGCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RVTAPSPVPTDEEHRSMARTSLN*QILLPA Trigger: TGCTGGCAACAAGATCTGTCAGTTTAAGCTGGTCCT...AGCCATGCTCCTGTGCTCCTCATCCGTGGGGACAGGGCTTGGAGCAGTCACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | CTCCGGCCTAGGATCAAAGTTATGCGGAGAATTCTTGATGGACCCTTCCCCTGCTCCATTGGGTCGTGCTaGACCTCCTCGACCCGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LRPRIKVMRRILDGPFPCSIGSC*TSSTRH Trigger: ATGGCGGGTCGAGGAGGTGCAGCACGACCCAATGGA...GCAGGGGAAGGGTCCATCAAGAATTCTCCGCATAACTTTGATCCTAGGCCGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR CCA 90 bp | TTCAGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGCTGGCTCCGGCTGGCTaGGTTGCTCTCCTGCAGATC | + |
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Preference number: 4 (lower is better) Translates to: FRKNREATYGLISCQRRTLAPAG*VALLQI Trigger: GATCTGCAGGAGAGCAACCCAGCCAGCCGGAGCCAG...CGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCTGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | CTAGGATCAAAGTTATGCGGAGAATTCTTGATGGACCCTTCCCCTGCCCCCAGTTCCGGCTGGCTGGGTTaGTCTCCTGCAGATCCACAC | + |
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Preference number: 4 (lower is better) Translates to: LGSKLCGEFLMDPSPAPSSGWLG*SPADPH Trigger: GTGTGGATCTGCAGGAGAGCAACCCAGCCAGCCGGA...ACTGGGGGCAGGGGAAGGGTCCATCAAGAATTCTCCGCATAACTTTGATCCTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR CCA 90 bp | TTCAGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGCAGCAGCTGGTCCATTaGGTCGTGCTGCACCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: FRKNREATYGLISCQRRTQQLVH*VVLHLL Trigger: GAGGAGGTGCAGCACGACCCAATGGACCAGCTGCTG...CGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCTGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR TCA 90 bp | CAACAGCAGGGCTTCTTTCTTTTGGTTACCATGACCACCAGCATCCTCTCACACCATGGAACTGCCCCTTaGCAAAGCGGAGGACCAGGC | + |
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Preference number: 4 (lower is better) Translates to: QQQGFFLLVTMTTSILSHHGTAP*QSGGPG Trigger: GCCTGGTCCTCCGCTTTGTCAAGGGGCAGTTCCATG...GTGTGAGAGGATGCTGGTGGTCATGGTAACCAAAAGAAAGAAGCCCTGCTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | CAACAGCAGGGCTTCTTTCTTTTGGTTACCATGACCACCAGCATCCTCTCACACTCCATTGGGTCGTGCTaGACCTCCTCGACCCGCCAT | + |
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Preference number: 4 (lower is better) Translates to: QQQGFFLLVTMTTSILSHSIGSC*TSSTRH Trigger: ATGGCGGGTCGAGGAGGTGCAGCACGACCCAATGGA...GTGTGAGAGGATGCTGGTGGTCATGGTAACCAAAAGAAAGAAGCCCTGCTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR CCA 90 bp | CAACAGCAGGGCTTCTTTCTTTTGGTTACCATGACCACCAGCATCCTCTCACACCAGCAGCTGGTCCATTaGGTCGTGCTGCACCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QQQGFFLLVTMTTSILSHQQLVH*VVLHLL Trigger: GAGGAGGTGCAGCACGACCCAATGGACCAGCTGCTG...GTGTGAGAGGATGCTGGTGGTCATGGTAACCAAAAGAAAGAAGCCCTGCTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR CCA 90 bp | TTCAGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGCTTGTTGCCAGCAGCTaGTCCATTGGGTCGTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: FRKNREATYGLISCQRRTLVASS*SIGSCC Trigger: GCAGCACGACCCAATGGACCAGCTGCTGGCAACAAG...CGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCTGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | TCAGTCCTATCCTCTTCCACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTTGGTCCATTGGGTCGTaGTGCACCTCCTCGACCCGC | + |
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Preference number: 4 (lower is better) Translates to: SVLSSSTIRTTNSRASFFWSIGS*CTSSTR Trigger: GCGGGTCGAGGAGGTGCAGCACGACCCAATGGACCA...AAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGTGGAAGAGGATAGGACTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR CCA 90 bp | CAACAGCAGGGCTTCTTTCTTTTGGTTACCATGACCACCAGCATCCTCTCACACCTTGTTGCCAGCAGCTaGTCCATTGGGTCGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: QQQGFFLLVTMTTSILSHLVASS*SIGSCC Trigger: GCAGCACGACCCAATGGACCAGCTGCTGGCAACAAG...GTGTGAGAGGATGCTGGTGGTCATGGTAACCAAAAGAAAGAAGCCCTGCTGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR CCA 90 bp | CTAGGATCAAAGTTATGCGGAGAATTCTTGATGGACCCTTCCCCTGCCCCCAGTAGTGGGAGGGGAACATaGCAGATGGCAGGGCTGAAA | + |
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Preference number: 4 (lower is better) Translates to: LGSKLCGEFLMDPSPAPSSGRGT*QMAGLK Trigger: TTTCAGCCCTGCCATCTGCCATGTTCCCCTCCCACT...ACTGGGGGCAGGGGAAGGGTCCATCAAGAATTCTCCGCATAACTTTGATCCTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019317.12 |
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| CDS-3UTR TCA 90 bp | TCAGTCCTATCCTCTTCCACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTCATGGAACTGCCCCTTaGCAAAGCGGAGGACCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SVLSSSTIRTTNSRASFFHGTAP*QSGGPG Trigger: GCCTGGTCCTCCGCTTTGTCAAGGGGCAGTTCCATG...AAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGTGGAAGAGGATAGGACTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR TCA 90 bp | AGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGAGGTGGCAGACGTCTCCATaGAGAGCAAGCTGTTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: RKNREATYGLISCQRRTRWQTSP*RASCCH Trigger: ATGACAACAGCTTGCTCTTCATGGAGACGTCTGCCA...CCTCGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | AGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGAGGACTGACAGATCTTGTTaGCAGCAGCTGGTCCATTGG | + |
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Preference number: 4 (lower is better) Translates to: RKNREATYGLISCQRRTRTDRSC*QQLVHW Trigger: CCAATGGACCAGCTGCTGGCAACAAGATCTGTCAGT...CCTCGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | CTCCGGCCTAGGATCAAAGTTATGCGGAGAATTCTTGATGGACCCTTCCCCTGCACTGACAGATCTTGTTaGCAGCAGCTGGTCCATTGG | + |
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Preference number: 4 (lower is better) Translates to: LRPRIKVMRRILDGPFPCTDRSC*QQLVHW Trigger: CCAATGGACCAGCTGCTGGCAACAAGATCTGTCAGT...GCAGGGGAAGGGTCCATCAAGAATTCTCCGCATAACTTTGATCCTAGGCCGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR TCA 90 bp | TTCAGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGAGGACCAGCTTAAACTaGCAGATCTTGTTGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: FRKNREATYGLISCQRRTRTSLN*QILLPA Trigger: TGCTGGCAACAAGATCTGTCAGTTTAAGCTGGTCCT...CGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR TCA 90 bp | CAACAGCAGGGCTTCTTTCTTTTGGTTACCATGACCACCAGCATCCTCTCACACTGGCAGACGTCTCCATaGAGAGCAAGCTGTTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: QQQGFFLLVTMTTSILSHWQTSP*RASCCH Trigger: ATGACAACAGCTTGCTCTTCATGGAGACGTCTGCCA...GTGTGAGAGGATGCTGGTGGTCATGGTAACCAAAAGAAAGAAGCCCTGCTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | TCAGTCCTATCCTCTTCCACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTGCTGGGTTGCTCTCCTaGAGATCCACACCTCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: SVLSSSTIRTTNSRASFFAGLLS*RSTPLV Trigger: AACCAGAGGTGTGGATCTGCAGGAGAGCAACCCAGC...AAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGTGGAAGAGGATAGGACTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| 3UTR CAA 72 bp | CACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTaGGTTACCATGACCACCAGCATCCTCTCACACACA | + |
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Preference number: 4 (lower is better) Translates to: HHQNYQQQGFFL*VTMTTSILSHT Trigger: TGTGTGTGAGAGGATGCTGGTGGTCATGGTAACCAAAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | CTAGGATCAAAGTTATGCGGAGAATTCTTGATGGACCCTTCCCCTGCCCCCAGTCCAATTCTTAGCCCGTaGAAATGTATCTGTGTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: LGSKLCGEFLMDPSPAPSPILSP*KCICVG Trigger: ACCAACACAGATACATTTGCACGGGCTAAGAATTGG...ACTGGGGGCAGGGGAAGGGTCCATCAAGAATTCTCCGCATAACTTTGATCCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR GCA 90 bp | TTCAGGAAAAACAGAGAGGCTACGTATGGCCTGATCAGCTGCCAGAGAAGGACGCCAATTCTTAGCCCGTaGAAATGTATCTGTGTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: FRKNREATYGLISCQRRTPILSP*KCICVG Trigger: ACCAACACAGATACATTTGCACGGGCTAAGAATTGG...CGTCCTTCTCTGGCAGCTGATCAGGCCATACGTAGCCTCTCTGTTTTTCCTGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS TCA 90 bp | CTGGACTTGCCCACGGCAGACTCGCCCAAGAGGACCAGCTTAAACTaGCAGATCTTGTTGCCAGCAGCTGGTCCATTGGGTCGTGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: LDLPTADSPKRTSLN*QILLPAAGPLGRAA Trigger: TGCAGCACGACCCAATGGACCAGCTGCTGGCAACAAGATCTGTCAGTTTAAGCTGGTCCTCTTGGGCGAGTCTGCCGTGGGCAAGTCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 ENSMUST00000155843.2 |
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| CDS-3UTR CAA 90 bp | CTCCGGCCTAGGATCAAAGTTATGCGGAGAATTCTTGATGGACCCTTCCCCTGCCCAGCAGCTGGTCCATaGGGTCGTGCTGCACCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LRPRIKVMRRILDGPFPCPAAGP*GRAAPP Trigger: AGGAGGTGCAGCACGACCCAATGGACCAGCTGCTGG...GCAGGGGAAGGGTCCATCAAGAATTCTCCGCATAACTTTGATCCTAGGCCGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR CAA 90 bp | TCAGTCCTATCCTCTTCCACCATCAGAACTACCAACAGCAGGGCTTCTTTCTTTCCAGCAGCTGGTCCATaGGGTCGTGCTGCACCTCCT | + |
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Preference number: 5 (lower is better) Translates to: SVLSSSTIRTTNSRASFFPAAGP*GRAAPP Trigger: AGGAGGTGCAGCACGACCCAATGGACCAGCTGCTGG...AAAGAAAGAAGCCCTGCTGTTGGTAGTTCTGATGGTGGAAGAGGATAGGACTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 |
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| CDS-3UTR CAA 90 bp | CTCCGGCCTAGGATCAAAGTTATGCGGAGAATTCTTGATGGACCCTTCCCCTGCGTCATCTGCATAGGCTaGTGCTTCCTGACTCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: LRPRIKVMRRILDGPFPCVICIG*CFLTQA Trigger: TGCCTGAGTCAGGAAGCACAAGCCTATGCAGATGAC...GCAGGGGAAGGGTCCATCAAGAATTCTCCGCATAACTTTGATCCTAGGCCGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019317.12 |
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| CDS CCA 72 bp | GACCAGCTTAAACTGACAGATCTTGTTGCCAGCAGCTaGTCCATTGGGTCGTGCTGCACCTCCTCGACCCGC | + |
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Preference number: 6 (lower is better) Translates to: DQLKLTDLVASS*SIGSCCTSSTR Trigger: GCGGGTCGAGGAGGTGCAGCACGACCCAATGGACCAGCTGCTGGCAACAAGATCTGTCAGTTTAAGCTGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 ENSMUST00000155500.2 ENSMUST00000155843.2 |
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| CDS TCA 72 bp | CCCACGGCAGACTCGCCCAAGAGGACCAGCTTAAACTaGCAGATCTTGTTGCCAGCAGCTGGTCCATTGGGT | + |
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Preference number: 6 (lower is better) Translates to: PTADSPKRTSLN*QILLPAAGPLG Trigger: ACCCAATGGACCAGCTGCTGGCAACAAGATCTGTCAGTTTAAGCTGGTCCTCTTGGGCGAGTCTGCCGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000019317.12 ENSMUST00000107364.8 ENSMUST00000155500.2 ENSMUST00000155843.2 |
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| CDS CCA 72 bp | ACTCAGGCATGTGAGGAAGAGAGTGGGAGGGGAACATaGCAGATGGCAGGGCTGAAACTCCACAGCTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: TQACEEESGRGT*QMAGLKLHSSL Trigger: AAGAGAGCTGTGGAGTTTCAGCCCTGCCATCTGCCATGTTCCCCTCCCACTCTCTTCCTCACATGCCTGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019317.12 |
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