Pregenerated sensors for RAB5B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000711Ensembl transcript IDs: ENSMUST00000000727.4
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGCCTCATGGATTCCTCAGCTGCTCTGGAACACAAGTCAGTCTCTaGGCCCAAGGGGCAGAAAGGCTCAACTCGAGGTTACCGTGGTCT | + |
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Preference number: 1 (lower is better) Translates to: WPHGFLSCSGTQVSL*AQGAERLNSRLPWS Trigger: AGACCACGGTAACCTCGAGTTGAGCCTTTCTGCCCCTTGGGCTCAGAGACTGACTTGTGTTCCAGAGCAGCTGAGGAATCCATGAGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR TCA 90 bp | GGACAAAAGGGAAACCAGCCTCGGGGCAAGTTCCAGAGCCACGGATaGCACTGCACCTCAACCTTTGTCCTACTAATAAACTCCCATTCA | + |
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Preference number: 1 (lower is better) Translates to: GQKGNQPRGKFQSHG*HCTSTFVLLINSHS Trigger: TGAATGGGAGTTTATTAGTAGGACAAAGGTTGAGGTGCAGTGTCATCCGTGGCTCTGGAACTTGCCCCGAGGCTGGTTTCCCTTTTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR GCA 90 bp | ACACTCCTTTTGCCTGACCTTTCTTTACTCCACTACCATGGCCCATaGTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCTATACC | + |
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Preference number: 1 (lower is better) Translates to: TLLLPDLSLLHYHGP*YSEATPQLLRQTYT Trigger: GGTATAGGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTGGAGTAAAGAAAGGTCAGGCAAAAGGAGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR GCA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCTTCCTCACTCCCTCCTaGTGCGAGCCTTACTCTCCC | + |
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Preference number: 2 (lower is better) Translates to: HYHGPCYSEATPQLLRQTFLTPS*CEPYSP Trigger: GGGAGAGTAAGGCTCGCAGCAGGAGGGAGTGAGGAA...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR GCA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCCTCCCATTCAGTGCCTaGGAGCTTGACTCCCTGTTC | + |
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Preference number: 2 (lower is better) Translates to: HYHGPCYSEATPQLLRQTLPFSA*ELDSLF Trigger: GAACAGGGAGTCAAGCTCGCAGGCACTGAATGGGAG...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR CCA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCTTGGAAGGAAGGTCCTaGGGAGATGTGACCCCAAGC | + |
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Preference number: 2 (lower is better) Translates to: HYHGPCYSEATPQLLRQTLEGRS*GDVTPS Trigger: GCTTGGGGTCACATCTCCCCAGGACCTTCCTTCCAA...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR GCA 90 bp | ATACATAGGCCTCAGAGGACGGTATCAGAGTACCTCCTCCAATTAGATCACAGCAGCCAGGGCTCAGTGTaGTGTTACCGTAGGGACTGT | + |
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Preference number: 2 (lower is better) Translates to: IHRPQRTVSEYLLQLDHSSQGSV*CYRRDC Trigger: ACAGTCCCTACGGTAACAGCACACTGAGCCCTGGCT...GCTGTGATCTAATTGGAGGAGGTACTCTGATACCGTCCTCTGAGGCCTATGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR TCA 90 bp | GAACACTCCTTTTGCCTGACCTTTCTTTACTCCACTACCATGGCCCATGCTATTTTCTTTGGAGCACTCTaGGGTCCAATCCCCACACTC | + |
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Preference number: 2 (lower is better) Translates to: EHSFCLTFLYSTTMAHAIFFGAL*GPIPTL Trigger: GAGTGTGGGGATTGGACCTCAGAGTGCTCCAAAGAA...AATAGCATGGGCCATGGTAGTGGAGTAAAGAAAGGTCAGGCAAAAGGAGTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR CCA 90 bp | ACAGGATCAAGAAGAGGGAGTAATGATGAAAGGTGGGATGTGAGGCAGGAGACAGCTGAGGGGTGGGGATaGAGGTTATTTCTTAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: TGSRRGSNDERWDVRQETAEGWG*RLFLSS Trigger: AGAGCTAAGAAATAACCTCCATCCCCACCCCTCAGC...TGTCTCCTGCCTCACATCCCACCTTTCATCATTACTCCCTCTTCTTGATCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR CCA 90 bp | ACAGGATCAAGAAGAGGGAGTAATGATGAAAGGTGGGATGTGAGGCAGGAGACACTGTGTGCTGAGGGGTaGGGATGGAGGTTATTTCTT | + |
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Preference number: 2 (lower is better) Translates to: TGSRRGSNDERWDVRQETLCAEG*GWRLFL Trigger: AAGAAATAACCTCCATCCCCACCCCTCAGCACACAG...TGTCTCCTGCCTCACATCCCACCTTTCATCATTACTCCCTCTTCTTGATCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR CCA 90 bp | ACAGGATCAAGAAGAGGGAGTAATGATGAAAGGTGGGATGTGAGGCAGGAGACATCTTCTCTGAAACACTaGAAAAACACGGGGGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: TGSRRGSNDERWDVRQETSSLKH*KNTGVG Trigger: CCCCACCCCCGTGTTTTTCCAGTGTTTCAGAGAAGA...TGTCTCCTGCCTCACATCCCACCTTTCATCATTACTCCCTCTTCTTGATCCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR TCA 90 bp | ACAGGATCAAGAAGAGGGAGTAATGATGAAAGGTGGGATGTGAGGCAGGAGACACCTGGTGTTGGTTGCTaGAGCATTAAAAAGTGCCAT | + |
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Preference number: 2 (lower is better) Translates to: TGSRRGSNDERWDVRQETPGVGC*SIKKCH Trigger: ATGGCACTTTTTAATGCTTCAGCAACCAACACCAGG...TGTCTCCTGCCTCACATCCCACCTTTCATCATTACTCCCTCTTCTTGATCCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR TCA 72 bp | GGATTCCTCAGCTGCTCTGGAACACAAGTCAGTCTCTaGGCCCAAGGGGCAGAAAGGCTCAACTCGAGGTTA | + |
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Preference number: 3 (lower is better) Translates to: GFLSCSGTQVSL*AQGAERLNSRL Trigger: TAACCTCGAGTTGAGCCTTTCTGCCCCTTGGGCTCAGAGACTGACTTGTGTTCCAGAGCAGCTGAGGAATCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR TCA 72 bp | GGAAACCAGCCTCGGGGCAAGTTCCAGAGCCACGGATaGCACTGCACCTCAACCTTTGTCCTACTAATAAAC | + |
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Preference number: 3 (lower is better) Translates to: GNQPRGKFQSHG*HCTSTFVLLIN Trigger: GTTTATTAGTAGGACAAAGGTTGAGGTGCAGTGTCATCCGTGGCTCTGGAACTTGCCCCGAGGCTGGTTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR CAA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCACCAGTGAAGATTCTTaGGAGCACTCTGAGGTCCAA | + |
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Preference number: 3 (lower is better) Translates to: HYHGPCYSEATPQLLRQTTSEDS*EHSEVQ Trigger: TTGGACCTCAGAGTGCTCCAAAGAATCTTCACTGGT...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR CAA 90 bp | GAACACTCCTTTTGCCTGACCTTTCTTTACTCCACTACCATGGCCCATGCTATTTCAGTGCCTGCGAGCTaGACTCCCTGTTCTCACTCC | + |
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Preference number: 3 (lower is better) Translates to: EHSFCLTFLYSTTMAHAISVPAS*TPCSHS Trigger: GGAGTGAGAACAGGGAGTCAAGCTCGCAGGCACTGA...AATAGCATGGGCCATGGTAGTGGAGTAAAGAAAGGTCAGGCAAAAGGAGTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR TCA 72 bp | GAAGGACCAAAGCCCTCTGATGATACAAGGCAGTTGTaGGGCACCTTCAGTTCTAGCTGCCCTGTCATTGGA | + |
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Preference number: 3 (lower is better) Translates to: EGPKPSDDTRQL*GTFSSSCPVIG Trigger: TCCAATGACAGGGCAGCTAGAACTGAAGGTGCCTCACAACTGCCTTGTATCATCAGAGGGCTTTGGTCCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR GCA 72 bp | TTGCCTGACCTTTCTTTACTCCACTACCATGGCCCATaGTATTCTGAGGCCACTCCCCAGTTGCTCAGACAA | + |
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Preference number: 3 (lower is better) Translates to: LPDLSLLHYHGP*YSEATPQLLRQ Trigger: TTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTGGAGTAAAGAAAGGTCAGGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR CCA 72 bp | GCCCAAGGGGCAGAAAGGCTCAACTCGAGGTTACCGTaGTCTTTTCCTTTCTTCTGCATGTTTCTCCCAAAC | + |
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Preference number: 3 (lower is better) Translates to: AQGAERLNSRLP*SFPFFCMFLPN Trigger: GTTTGGGAGAAACATGCAGAAGAAAGGAAAAGACCACGGTAACCTCGAGTTGAGCCTTTCTGCCCCTTGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR-3UTR CAA 90 bp | GAACACTCCTTTTGCCTGACCTTTCTTTACTCCACTACCATGGCCCATGCTATTGTGAAGAAGTTTGTTTaGGAAGGAAGGTCCTGGGGA | + |
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Preference number: 3 (lower is better) Translates to: EHSFCLTFLYSTTMAHAIVKKFV*EGRSWG Trigger: TCCCCAGGACCTTCCTTCCAAAACAAACTTCTTCAC...AATAGCATGGGCCATGGTAGTGGAGTAAAGAAAGGTCAGGCAAAAGGAGTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCCCACCATGCGCTTGTTaGCAAGGTCAGCTTTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: HYHGPCYSEATPQLLRQTPPCAC*QGQLCS Trigger: GGAACAAAGCTGACCTTGCCAACAAGCGCATGGTGG...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR GCA 90 bp | ACAGGATCAAGAAGAGGGAGTAATGATGAAAGGTGGGATGTGAGGCAGGAGACATTGCTGGCCTGGGGTTaGCCATTGGGCCTGGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: TGSRRGSNDERWDVRQETLLAWG*PLGLAV Trigger: TACAGCCAGGCCCAATGGGCAACCCCAGGCCAGCAA...TGTCTCCTGCCTCACATCCCACCTTTCATCATTACTCCCTCTTCTTGATCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR GCA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCCTTCATACTCCACCATaGGCTTGTTGGCAAGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: HYHGPCYSEATPQLLRQTLHTPP*ACWQGQ Trigger: CTGACCTTGCCAACAAGCGCATGGTGGAGTATGAAG...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR GCA 90 bp | ACAGGATCAAGAAGAGGGAGTAATGATGAAAGGTGGGATGTGAGGCAGGAGACAATGCTAGGGCTGGCTTaGCGCTGTAGTTCCTTTACC | + |
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Preference number: 4 (lower is better) Translates to: TGSRRGSNDERWDVRQETMLGLA*RCSSFT Trigger: GGTAAAGGAACTACAGCGGCAAGCCAGCCCTAGCAT...TGTCTCCTGCCTCACATCCCACCTTTCATCATTACTCCCTCTTCTTGATCCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR GCA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCCTTTGGCAACTTCTTTaGTATTGCCAGGAAGAGATC | + |
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Preference number: 4 (lower is better) Translates to: HYHGPCYSEATPQLLRQTLWQLL*YCQEEI Trigger: GATCTCTTCCTGGCAATAGCAAAGAAGTTGCCAAAG...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | ATACATAGGCCTCAGAGGACGGTATCAGAGTACCTCCTCCAATTAGATCACAGCTCTAAACACACGGATTaGGTGAGGAAGGCCGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: IHRPQRTVSEYLLQLDHSSKHTD*VRKAAP Trigger: TGGAGCGGCCTTCCTCACCCAATCCGTGTGTTTAGA...GCTGTGATCTAATTGGAGGAGGTACTCTGATACCGTCCTCTGAGGCCTATGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | ATACATAGGCCTCAGAGGACGGTATCAGAGTACCTCCTCCAATTAGATCACAGCATAGGGGCTAAACTGTaGTATCGCTCCTGCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: IHRPQRTVSEYLLQLDHSIGAKL*YRSCPA Trigger: TGCTGGGCAGGAGCGATACCACAGTTTAGCCCCTAT...GCTGTGATCTAATTGGAGGAGGTACTCTGATACCGTCCTCTGAGGCCTATGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | AAGGTCTTTAATGTAACTAAAAGTATATCCCTCCCTTCTCAGTCCCTGGGATTACCTGGGGTTGCCCATTaGGCCTGGCTGTACTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: KVFNVTKSISLPSQSLGLPGVAH*AWLYFC Trigger: GCAGAAGTACAGCCAGGCCCAATGGGCAACCCCAGG...TAATCCCAGGGACTGAGAAGGGAGGGATATACTTTTAGTTACATTAAAGACCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | ATACATAGGCCTCAGAGGACGGTATCAGAGTACCTCCTCCAATTAGATCACAGCCTGGGGTTCGCTCTTTaGCAACTTCTTTGCTATTGC | + |
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Preference number: 4 (lower is better) Translates to: IHRPQRTVSEYLLQLDHSLGFAL*QLLCYC Trigger: GCAATAGCAAAGAAGTTGCCAAAGAGCGAACCCCAG...GCTGTGATCTAATTGGAGGAGGTACTCTGATACCGTCCTCTGAGGCCTATGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | AGTCCCTGGGATTACCCTTCATCATCTTGTAAAGAGGAGAAACAGGATCAAGAAACTGGCATATTTTGCTaGCCTGGGGTTGCCCATTGG | + |
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Preference number: 4 (lower is better) Translates to: SPWDYPSSSCKEEKQDQETGIFC*PGVAHW Trigger: CCAATGGGCAACCCCAGGCCAGCAAAATATGCCAGT...TTCTTGATCCTGTTTCTCCTCTTTACAAGATGATGAAGGGTAATCCCAGGGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| 3UTR CAA 72 bp | ACTGAATGTGAACCCTGGGAAGATAGAACACTCCTTTaGCCTGACCTTTCTTTACTCCACTACCATGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: TECEPWEDRTLL*PDLSLLHYHGP Trigger: TGGGCCATGGTAGTGGAGTAAAGAAAGGTCAGGCAAAAGGAGTGTTCTATCTTCCCAGGGTTCACATTCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR GCA 90 bp | GAACACTCCTTTTGCCTGACCTTTCTTTACTCCACTACCATGGCCCATGCTATTGTCAGCTTTGTTCCCTaGCAAGGCAATAACAATGCT | + |
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Preference number: 4 (lower is better) Translates to: EHSFCLTFLYSTTMAHAIVSFVP*QGNNNA Trigger: AGCATTGTTATTGCCTTGGCAGGGAACAAAGCTGAC...AATAGCATGGGCCATGGTAGTGGAGTAAAGAAAGGTCAGGCAAAAGGAGTGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | AGTCCCTGGGATTACCCTTCATCATCTTGTAAAGAGGAGAAACAGGATCAAGAACAGTTGCTACAACACTaGCTCTTGTTCTGCTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SPWDYPSSSCKEEKQDQEQLLQH*LLFCWD Trigger: GTCCCAGCAGAACAAGAGCCAGTGTTGTAGCAACTG...TTCTTGATCCTGTTTCTCCTCTTTACAAGATGATGAAGGGTAATCCCAGGGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR TCA 90 bp | AGTCCCTGGGATTACCCTTCATCATCTTGTAAAGAGGAGAAACAGGATCAAGAACCAGCAGGACCAATTTaGACTGGCATATTTTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SPWDYPSSSCKEEKQDQEPAGPI*TGIFCW Trigger: CCAGCAAAATATGCCAGTTCAAATTGGTCCTGCTGG...TTCTTGATCCTGTTTCTCCTCTTTACAAGATGATGAAGGGTAATCCCAGGGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR TCA 90 bp | AAGGTCTTTAATGTAACTAAAAGTATATCCCTCCCTTCTCAGTCCCTGGGATTATCATCTGCATATGCCTaGGCCTCTTCATACTCCACC | + |
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Preference number: 4 (lower is better) Translates to: KVFNVTKSISLPSQSLGLSSAYA*ASSYST Trigger: GGTGGAGTATGAAGAGGCTCAGGCATATGCAGATGA...TAATCCCAGGGACTGAGAAGGGAGGGATATACTTTTAGTTACATTAAAGACCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR GCA 90 bp | AGTCCCTGGGATTACCCTTCATCATCTTGTAAAGAGGAGAAACAGGATCAAGAAGTTGTCATCTGCATATaGCTGAGCCTCTTCATACTC | + |
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Preference number: 4 (lower is better) Translates to: SPWDYPSSSCKEEKQDQEVVICI*LSLFIL Trigger: GAGTATGAAGAGGCTCAGGCATATGCAGATGACAAC...TTCTTGATCCTGTTTCTCCTCTTTACAAGATGATGAAGGGTAATCCCAGGGACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR GCA 90 bp | AAGGTCTTTAATGTAACTAAAAGTATATCCCTCCCTTCTCAGTCCCTGGGATTACTTTACCCATGTCTTTaGCCGAGCAAACGTTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: KVFNVTKSISLPSQSLGLLYPCL*PSKRFL Trigger: CAGGAAACGTTTGCTCGGGCAAAGACATGGGTAAAG...TAATCCCAGGGACTGAGAAGGGAGGGATATACTTTTAGTTACATTAAAGACCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | AAGGTCTTTAATGTAACTAAAAGTATATCCCTCCCTTCTCAGTCCCTGGGATTAAGGACCAATTTGAACTaGCATATTTTGCTGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KVFNVTKSISLPSQSLGLRTNLN*HILLAW Trigger: CCAGGCCAGCAAAATATGCCAGTTCAAATTGGTCCT...TAATCCCAGGGACTGAGAAGGGAGGGATATACTTTTAGTTACATTAAAGACCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | AAGGTCTTTAATGTAACTAAAAGTATATCCCTCCCTTCTCAGTCCCTGGGATTACCAATGGTGCTTTCCTaGTATTCATGGAACTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: KVFNVTKSISLPSQSLGLPMVLS*YSWNCP Trigger: AGGACAGTTCCATGAATACCAGGAAAGCACCATTGG...TAATCCCAGGGACTGAGAAGGGAGGGATATACTTTTAGTTACATTAAAGACCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR GCA 90 bp | AAGGTCTTTAATGTAACTAAAAGTATATCCCTCCCTTCTCAGTCCCTGGGATTACAACTTCTTTGCTATTaGCAGGAAGAGATCATTCAC | + |
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Preference number: 4 (lower is better) Translates to: KVFNVTKSISLPSQSLGLQLLCY*QEEIIH Trigger: GTGAATGATCTCTTCCTGGCAATAGCAAAGAAGTTG...TAATCCCAGGGACTGAGAAGGGAGGGATATACTTTTAGTTACATTAAAGACCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CCA 90 bp | AAGGTCTTTAATGTAACTAAAAGTATATCCCTCCCTTCTCAGTCCCTGGGATTACTTTCCTGGTATTCATaGAACTGTCCTTTGACAAAA | + |
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Preference number: 4 (lower is better) Translates to: KVFNVTKSISLPSQSLGLLSWYS*NCPLTK Trigger: TTTTGTCAAAGGACAGTTCCATGAATACCAGGAAAG...TAATCCCAGGGACTGAGAAGGGAGGGATATACTTTTAGTTACATTAAAGACCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCTACTCCACCATGCGCTaGTTGGCAAGGTCAGCTTTG | + |
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Preference number: 5 (lower is better) Translates to: HYHGPCYSEATPQLLRQTYSTMR*LARSAL Trigger: CAAAGCTGACCTTGCCAACAAGCGCATGGTGGAGTA...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCCCTTTACCCATGTCTTaGCCCGAGCAAACGTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: HYHGPCYSEATPQLLRQTPLPMS*PEQTFP Trigger: AGGAAACGTTTGCTCGGGCAAAGACATGGGTAAAGG...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCTTGGCAAGGTCAGCTTaGTTCCCTGCCAAGGCAATA | + |
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Preference number: 5 (lower is better) Translates to: HYHGPCYSEATPQLLRQTLARSA*FPAKAI Trigger: TATTGCCTTGGCAGGGAACAAAGCTGACCTTGCCAA...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | AGTCCCTGGGATTACCCTTCATCATCTTGTAAAGAGGAGAAACAGGATCAAGAAGCCTGGGGTTGCCCATaGGGCCTGGCTGTACTTCTG | + |
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Preference number: 5 (lower is better) Translates to: SPWDYPSSSCKEEKQDQEAWGCP*GLAVLL Trigger: CAGAAGTACAGCCAGGCCCAATGGGCAACCCCAGGC...TTCTTGATCCTGTTTCTCCTCTTTACAAGATGATGAAGGGTAATCCCAGGGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | CACTACCATGGCCCATGCTATTCTGAGGCCACTCCCCAGTTGCTCAGACAAACCTCATGGAACTGTCCTTaGACAAAACGTAACACCAGG | + |
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Preference number: 5 (lower is better) Translates to: HYHGPCYSEATPQLLRQTSWNCP*TKRNTR Trigger: CCTGGTGTTACGTTTTGTCAAAGGACAGTTCCATGA...GGTTTGTCTGAGCAACTGGGGAGTGGCCTCAGAATAGCATGGGCCATGGTAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | ACAGGATCAAGAAGAGGGAGTAATGATGAAAGGTGGGATGTGAGGCAGGAGACACTACAACACTGGCTCTaGTTCTGCTGGGACTGCTCA | + |
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Preference number: 5 (lower is better) Translates to: TGSRRGSNDERWDVRQETLQHWL*FCWDCS Trigger: TGAGCAGTCCCAGCAGAACAAGAGCCAGTGTTGTAG...TGTCTCCTGCCTCACATCCCACCTTTCATCATTACTCCCTCTTCTTGATCCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | GAACACTCCTTTTGCCTGACCTTTCTTTACTCCACTACCATGGCCCATGCTATTTTGAACTGGCATATTTaGCTGGCCTGGGGTTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: EHSFCLTFLYSTTMAHAILNWHI*LAWGCP Trigger: TGGGCAACCCCAGGCCAGCAAAATATGCCAGTTCAA...AATAGCATGGGCCATGGTAGTGGAGTAAAGAAAGGTCAGGCAAAAGGAGTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | ACAGGATCAAGAAGAGGGAGTAATGATGAAAGGTGGGATGTGAGGCAGGAGACAGCAACTTCTTTGCTATaGCCAGGAAGAGATCATTCA | + |
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Preference number: 5 (lower is better) Translates to: TGSRRGSNDERWDVRQETATSLL*PGRDHS Trigger: TGAATGATCTCTTCCTGGCAATAGCAAAGAAGTTGC...TGTCTCCTGCCTCACATCCCACCTTTCATCATTACTCCCTCTTCTTGATCCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | AAGGTCTTTAATGTAACTAAAAGTATATCCCTCCCTTCTCAGTCCCTGGGATTATCCACCATGCGCTTGTaGGCAAGGTCAGCTTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: KVFNVTKSISLPSQSLGLSTMRL*ARSALF Trigger: GAACAAAGCTGACCTTGCCAACAAGCGCATGGTGGA...TAATCCCAGGGACTGAGAAGGGAGGGATATACTTTTAGTTACATTAAAGACCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | AGTCCCTGGGATTACCCTTCATCATCTTGTAAAGAGGAGAAACAGGATCAAGAATCTGGGGTTCGCTCTTaGGCAACTTCTTTGCTATTG | + |
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Preference number: 5 (lower is better) Translates to: SPWDYPSSSCKEEKQDQESGVRS*ATSLLL Trigger: CAATAGCAAAGAAGTTGCCAAAGAGCGAACCCCAGA...TTCTTGATCCTGTTTCTCCTCTTTACAAGATGATGAAGGGTAATCCCAGGGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS-3UTR CAA 90 bp | AAGGTCTTTAATGTAACTAAAAGTATATCCCTCCCTTCTCAGTCCCTGGGATTATCTTTGGCAACTTCTTaGCTATTGCCAGGAAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: KVFNVTKSISLPSQSLGLSLATS*LLPGRD Trigger: ATCTCTTCCTGGCAATAGCAAAGAAGTTGCCAAAGA...TAATCCCAGGGACTGAGAAGGGAGGGATATACTTTTAGTTACATTAAAGACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS TCA 72 bp | CTACAACACTGGCTCTTGTTCTGCTGGGACTGCTCATaGAGATCCACACCCCGACTTCGGCCTGCCGCACCC | + |
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Preference number: 6 (lower is better) Translates to: LQHWLLFCWDCS*RSTPRLRPAAP Trigger: GGGTGCGGCAGGCCGAAGTCGGGGTGTGGATCTTCATGAGCAGTCCCAGCAGAACAAGAGCCAGTGTTGTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS GCA 72 bp | CATCTGCATATGCCTGAGCCTCTTCATACTCCACCATaGGCTTGTTGGCAAGGTCAGCTTTGTTCCCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: HLHMPEPLHTPP*ACWQGQLCSLP Trigger: TGGCAGGGAACAAAGCTGACCTTGCCAACAAGCGCATGGTGGAGTATGAAGAGGCTCAGGCATATGCAGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS CAA 72 bp | TCATACTCCACCATGCGCTTGTTGGCAAGGTCAGCTTaGTTCCCTGCCAAGGCAATAACAATGCTAGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: SYSTMRLLARSA*FPAKAITMLGL Trigger: CAGCCCTAGCATTGTTATTGCCTTGGCAGGGAACAAAGCTGACCTTGCCAACAAGCGCATGGTGGAGTATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS CCA 72 bp | AGGAAGGCCGCTCCAATGGTGCTTTCCTGGTATTCATaGAACTGTCCTTTGACAAAACGTAACACCAGGCTA | + |
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Preference number: 6 (lower is better) Translates to: RKAAPMVLSWYS*NCPLTKRNTRL Trigger: TAGCCTGGTGTTACGTTTTGTCAAAGGACAGTTCCATGAATACCAGGAAAGCACCATTGGAGCGGCCTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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| CDS CAA 72 bp | CCAATGGTGCTTTCCTGGTATTCATGGAACTGTCCTTaGACAAAACGTAACACCAGGCTAGACTTCCCCACT | + |
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Preference number: 6 (lower is better) Translates to: PMVLSWYSWNCP*TKRNTRLDFPT Trigger: AGTGGGGAAGTCTAGCCTGGTGTTACGTTTTGTCAAAGGACAGTTCCATGAATACCAGGAAAGCACCATTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000727.4 |
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