Pregenerated sensors for RAB5A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017831

Ensembl transcript IDs: ENSMUST00000017975.7

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	GGGTCCATACCCACTGGAGATGAGCTGTTCCCCTGCACTTTCACATaGAACAAGTGTACACACAGTCCTCATTTTCCTTTCTACTGCTGG	+
Preference number: 1 (lower is better) Translates to: GSIPTGDELFPCTFT*NKCTHSPHFPFYCW Trigger: CCAGCAGTAGAAAGGAAAATGAGGACTGTGTGTACACTTGTTCCATGTGAAAGTGCAGGGGAACAGCTCATCTCCAGTGGGTATGGACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR GCA 90 bp	TGGGTTAAGAGTGGGTCCATACCCACTGGAGATGAGCTGTTCCCCTaGACTTTCACATGGAACAAGTGTACACACAGTCCTCATTTTCCT	+
Preference number: 1 (lower is better) Translates to: WVKSGSIPTGDELFP*TFTWNKCTHSPHFP Trigger: AGGAAAATGAGGACTGTGTGTACACTTGTTCCATGTGAAAGTGCAGGGGAACAGCTCATCTCCAGTGGGTATGGACCCACTCTTAACCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR-3UTR CCA 90 bp	AATATTCATTCCTTCTTTCTGGAGATGCAAGACTGTTTTGTTGGGATTGCTTTAATGCTCCCAACTCCATaGTTTTTGCCATTCAGGAAG	+
Preference number: 2 (lower is better) Translates to: NIHSFFLEMQDCFVGIALMLPTP*FLPFRK Trigger: CTTCCTGAATGGCAAAAACCATGGAGTTGGGAGCAT...TAAAGCAATCCCAACAAAACAGTCTTGCATCTCCAGAAAGAAGGAATGAATATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR-3UTR GCA 90 bp	AATATTCATTCCTTCTTTCTGGAGATGCAAGACTGTTTTGTTGGGATTGCTTTACAACTCCATGGTTTTTaGCATTCAGGAAGTTCACAC	+
Preference number: 2 (lower is better) Translates to: NIHSFFLEMQDCFVGIALQLHGF*HSGSSH Trigger: GTGTGAACTTCCTGAATGGCAAAAACCATGGAGTTG...TAAAGCAATCCCAACAAAACAGTCTTGCATCTCCAGAAAGAAGGAATGAATATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR-3UTR CCA 90 bp	AGCAGATACCTGGTTTGTTTCCACTTTTTAAAAGAAGCTCATATGAAGGGACCATTCATTCCTTCTTTCTaGAGATGCAAGACTGTTTTG	+
Preference number: 2 (lower is better) Translates to: SRYLVCFHFLKEAHMKGPFIPSF*RCKTVL Trigger: CAAAACAGTCTTGCATCTCCAGAAAGAAGGAATGAA...TGGTCCCTTCATATGAGCTTCTTTTAAAAAGTGGAAACAAACCAGGTATCTGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR GCA 72 bp	AGTGGGTCCATACCCACTGGAGATGAGCTGTTCCCCTaGACTTTCACATGGAACAAGTGTACACACAGTCCT	+
Preference number: 3 (lower is better) Translates to: SGSIPTGDELFP*TFTWNKCTHSP Trigger: AGGACTGTGTGTACACTTGTTCCATGTGAAAGTGCAGGGGAACAGCTCATCTCCAGTGGGTATGGACCCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR CCA 72 bp	CCCACTGGAGATGAGCTGTTCCCCTGCACTTTCACATaGAACAAGTGTACACACAGTCCTCATTTTCCTTTC	+
Preference number: 3 (lower is better) Translates to: PTGDELFPCTFT*NKCTHSPHFPF Trigger: GAAAGGAAAATGAGGACTGTGTGTACACTTGTTCCATGTGAAAGTGCAGGGGAACAGCTCATCTCCAGTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR CCA 72 bp	ATTTTGAACATGTCATTCCTGACTATTATCCCAGTTTaGAGACTGGGTGGGTTAAGAGTGGGTCCATACCCA	+
Preference number: 3 (lower is better) Translates to: ILNMSFLTIIPV*RLGGLRVGPYP Trigger: TGGGTATGGACCCACTCTTAACCCACCCAGTCTCCAAACTGGGATAATAGTCAGGAATGACATGTTCAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR-3UTR CAA 90 bp	AGCAGATACCTGGTTTGTTTCCACTTTTTAAAAGAAGCTCATATGAAGGGACCACCAACTCCATGGTTTTaGCCATTCAGGAAGTTCACA	+
Preference number: 3 (lower is better) Translates to: SRYLVCFHFLKEAHMKGPPTPWF*PFRKFT Trigger: TGTGAACTTCCTGAATGGCAAAAACCATGGAGTTGG...TGGTCCCTTCATATGAGCTTCTTTTAAAAAGTGGAAACAAACCAGGTATCTGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR-3UTR CAA 90 bp	AATATTCATTCCTTCTTTCTGGAGATGCAAGACTGTTTTGTTGGGATTGCTTTATACCATAGTCTCTTTTaGGAAGTCACACTGGGCCGG	+
Preference number: 3 (lower is better) Translates to: NIHSFFLEMQDCFVGIALYHSLF*EVTLGR Trigger: CCGGCCCAGTGTGACTTCCAAAAAGAGACTATGGTA...TAAAGCAATCCCAACAAAACAGTCTTGCATCTCCAGAAAGAAGGAATGAATATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
CDS-3UTR CCA 90 bp	ATGTACATAATTGTTAGTGCACTGACTAATTATGCCCAAAGGGAAGCAGAGCCCTCAAGACACACAGTTTaGGTTAGAAAGGCAGCCCCA	+
Preference number: 4 (lower is better) Translates to: MYIIVSALTNYAQREAEPSRHTV*VRKAAP Trigger: TGGGGCTGCCTTTCTAACCCAAACTGTGTGTCTTGA...GGGCTCTGCTTCCCTTTGGGCATAATTAGTCAGTGCACTAACAATTATGTACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
3UTR CAA 72 bp	AATTTTGAACATGTCATTCCTGACTATTATCCCAGTTaGGAGACTGGGTGGGTTAAGAGTGGGTCCATACCC	+
Preference number: 4 (lower is better) Translates to: NFEHVIPDYYPS*ETGWVKSGSIP Trigger: GGGTATGGACCCACTCTTAACCCACCCAGTCTCCAAACTGGGATAATAGTCAGGAATGACATGTTCAAAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
CDS-3UTR GCA 90 bp	AATATTCATTCCTTCTTTCTGGAGATGCAAGACTGTTTTGTTGGGATTGCTTTAGCTTCTGGCTGGCTGTaGAGGCTCAGTAAGGTCTAC	+
Preference number: 4 (lower is better) Translates to: NIHSFFLEMQDCFVGIALASGWL*RLSKVY Trigger: GTAGACCTTACTGAGCCTGCACAGCCAGCCAGAAGC...TAAAGCAATCCCAACAAAACAGTCTTGCATCTCCAGAAAGAAGGAATGAATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
CDS-3UTR CCA 90 bp	ATGTACATAATTGTTAGTGCACTGACTAATTATGCCCAAAGGGAAGCAGAGCCCTGCACCAGGATTCTGTaGTTCATTCTTTGGCAGCTT	+
Preference number: 4 (lower is better) Translates to: MYIIVSALTNYAQREAEPCTRIL*FILWQL Trigger: AAGCTGCCAAAGAATGAACCACAGAATCCTGGTGCA...GGGCTCTGCTTCCCTTTGGGCATAATTAGTCAGTGCACTAACAATTATGTACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
CDS-3UTR CCA 90 bp	AGCAGATACCTGGTTTGTTTCCACTTTTTAAAAGAAGCTCATATGAAGGGACCACAGTTACTACAACACTaGCTTCTGGCTGGCTGTGCA	+
Preference number: 4 (lower is better) Translates to: SRYLVCFHFLKEAHMKGPQLLQH*LLAGCA Trigger: TGCACAGCCAGCCAGAAGCCAGTGTTGTAGTAACTG...TGGTCCCTTCATATGAGCTTCTTTTAAAAAGTGGAAACAAACCAGGTATCTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
CDS-3UTR GCA 90 bp	AATATTCATTCCTTCTTTCTGGAGATGCAAGACTGTTTTGTTGGGATTGCTTTAATCTGCATAGGACTGTaGTTCCTGGAAGTCAACAGC	+
Preference number: 4 (lower is better) Translates to: NIHSFFLEMQDCFVGIALICIGL*FLEVNS Trigger: GCTGTTGACTTCCAGGAAGCACAGTCCTATGCAGAT...TAAAGCAATCCCAACAAAACAGTCTTGCATCTCCAGAAAGAAGGAATGAATATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
CDS-3UTR CAA 90 bp	GTCACACTGGGCCGGCTAAATGCTCCCAACTCCATGGTTTTTGCCATTCAGGAAGTCCTCTGGCTGAGTTaGCACCAGGATTCTGTGGTT	+
Preference number: 5 (lower is better) Translates to: VTLGRLNAPNSMVFAIQEVLWLS*HQDSVV Trigger: AACCACAGAATCCTGGTGCAAACTCAGCCAGAGGAC...TTCCTGAATGGCAAAAACCATGGAGTTGGGAGCATTTAGCCGGCCCAGTGTGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
CDS-3UTR CAA 90 bp	GTCACACTGGGCCGGCTAAATGCTCCCAACTCCATGGTTTTTGCCATTCAGGAAGCTATGATACCGTTCTaGACCAGCTGTATCCCATAT	+
Preference number: 5 (lower is better) Translates to: VTLGRLNAPNSMVFAIQEAMIPF*TSCIPY Trigger: ATATGGGATACAGCTGGTCAAGAACGGTATCATAGC...TTCCTGAATGGCAAAAACCATGGAGTTGGGAGCATTTAGCCGGCCCAGTGTGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017975.7
CDS-3UTR CAA 90 bp	AGCAGATACCTGGTTTGTTTCCACTTTTTAAAAGAAGCTCATATGAAGGGACCAAGAACCAGGCTTGATTaGCCAACAGCAGACTCTCCT	+
Preference number: 5 (lower is better) Translates to: SRYLVCFHFLKEAHMKGPRTRLD*PTADSP Trigger: AGGAGAGTCTGCTGTTGGCAAATCAAGCCTGGTTCT...TGGTCCCTTCATATGAGCTTCTTTTAAAAAGTGGAAACAAACCAGGTATCTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017975.7