Pregenerated sensors for RAB4B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053291Ensembl transcript IDs: ENSMUST00000093040.13, ENSMUST00000153511.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAGAACAGGTGAGCTGGTTCTGCACATCTCAGCAGCCACAGGGCTaGGGGGCCACGGCTTGGGCGCTGCGAGGCTGCCGCAGCTGGCGG | + |
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Preference number: 1 (lower is better) Translates to: EEQVSWFCTSQQPQG*GATAWALRGCRSWR Trigger: CCGCCAGCTGCGGCAGCCTCGCAGCGCCCAAGCCGTGGCCCCTCAGCCCTGTGGCTGCTGAGATGTGCAGAACCAGCTCACCTGTTCTTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR TCA 90 bp | GTTCTGAGCCCCAGCCTTCGGGCAGGGCTGGTCCAGAAGAACAGGTaGGCTGGTTCTGCACATCTCAGCAGCCACAGGGCTGAGGGGCCA | + |
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Preference number: 1 (lower is better) Translates to: VLSPSLRAGLVQKNR*AGSAHLSSHRAEGP Trigger: TGGCCCCTCAGCCCTGTGGCTGCTGAGATGTGCAGAACCAGCTCACCTGTTCTTCTGGACCAGCCCTGCCCGAAGGCTGGGGCTCAGAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR TCA 90 bp | GCGCTGCGAGGCTGCCGCAGCTGGCGGAGGGATATGTCGCCATACTaGATGCCTGAACCCATCCTCTCTGGGTCTAGTTCACCTGAGTCG | + |
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Preference number: 1 (lower is better) Translates to: ALRGCRSWRRDMSPY*MPEPILSGSSSPES Trigger: CGACTCAGGTGAACTAGACCCAGAGAGGATGGGTTCAGGCATTCAGTATGGCGACATATCCCTCCGCCAGCTGCGGCAGCCTCGCAGCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR GCA 90 bp | TGCGAGGCTGCCGCAGCTGGCGGAGGGATATGTCGCCATACTGAATaGCTGAACCCATCCTCTCTGGGTCTAGTTCACCTGAGTCGATCT | + |
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Preference number: 1 (lower is better) Translates to: CEAAAAGGGICRHTE*LNPSSLGLVHLSRS Trigger: AGATCGACTCAGGTGAACTAGACCCAGAGAGGATGGGTTCAGGCATTCAGTATGGCGACATATCCCTCCGCCAGCTGCGGCAGCCTCGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR-3UTR TCA 90 bp | GGGCCAGGCAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCCAGCAGCCACAGGGCTaGGGGGCCACGGCTTGGGCG | + |
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Preference number: 2 (lower is better) Translates to: GPGRKLGPNGPGLKLWEFQQPQG*GATAWA Trigger: CGCCCAAGCCGTGGCCCCTCAGCCCTGTGGCTGCTG...GAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGCCTGGCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTCAGGTCCACGGCTTGGGCGCTaGGAGGCTGCCGCAGCTGGC | + |
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Preference number: 2 (lower is better) Translates to: AGSWGQTALVSSFGSSSGPRLGR*EAAAAG Trigger: GCCAGCTGCGGCAGCCTCGCAGCGCCCAAGCCGTGG...ACCTGAAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR-3UTR CCA 90 bp | GCCAGGCAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTTGGGGCCTGGCCTCTTaGGGCCTGGTTCTGAGCCCC | + |
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Preference number: 2 (lower is better) Translates to: ARQEVGAKRPWSQALGVLWGLAS*GLVLSP Trigger: GGGGCTCAGAACCAGGCCCCAAGAGGCCAGGCCCCA...AAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGCCTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR-3UTR CCA 90 bp | GCCAGGCAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTGGGCAGATTGGGGCCTaGCCTCTTGGGGCCTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: ARQEVGAKRPWSQALGVLGQIGA*PLGAWF Trigger: GAACCAGGCCCCAAGAGGCCAGGCCCCAATCTGCCC...AAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGCCTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR-3UTR CCA 90 bp | AGTTCTTCAGGTAGGGTTTGGGGCTCAGGGGGACTAGAGTTAGCCAAGGCAGAGTGGGGCCTGGCCTCTTaGGGCCTGGTTCTGAGCCCC | + |
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Preference number: 2 (lower is better) Translates to: SSSGRVWGSGGLELAKAEWGLAS*GLVLSP Trigger: GGGGCTCAGAACCAGGCCCCAAGAGGCCAGGCCCCA...CTCTGCCTTGGCTAACTCTAGTCCCCCTGAGCCCCAAACCCTACCTGAAGAACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR-3UTR CCA 90 bp | TCTTCAGGTAGGGTTTGGGGCTCAGGGGGACTAGAGTTAGCCAAGGCAGAGGAAGAGACTGGGGCAGATTaGGGCCTGGCCTCTTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: SSGRVWGSGGLELAKAEEETGAD*GLASWG Trigger: GCCCCAAGAGGCCAGGCCCCAATCTGCCCCAGTCTC...TTCCTCTGCCTTGGCTAACTCTAGTCCCCCTGAGCCCCAAACCCTACCTGAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR-3UTR CCA 90 bp | GGCCTCCAGGTAATAAATAACAGACTTGCAACAGCGGGGCCAGGCAGGAAGTTGGGGCAGATTGGGGCCTaGCCTCTTGGGGCCTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: GLQVINNRLATAGPGRKLGQIGA*PLGAWF Trigger: GAACCAGGCCCCAAGAGGCCAGGCCCCAATCTGCCC...CAACTTCCTGCCTGGCCCCGCTGTTGCAAGTCTGTTATTTATTACCTGGAGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR-3UTR CCA 90 bp | TTTGGGAGTTCTTCAGGTAGGGTTTGGGGCTCAGGGGGACTAGAGTTAGCCAAGCGAGGCTGCCGCAGCTaGCGGAGGGATATGTCGCCA | + |
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Preference number: 2 (lower is better) Translates to: FGSSSGRVWGSGGLELAKRGCRS*RRDMSP Trigger: TGGCGACATATCCCTCCGCCAGCTGCGGCAGCCTCG...CTTGGCTAACTCTAGTCCCCCTGAGCCCCAAACCCTACCTGAAGAACTCCCAAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR-3UTR CCA 90 bp | GGAACAGGCCTCCAGGTAATAAATAACAGACTTGCAACAGCGGGGCCAGGCAGGAAGCAGCAGCAGGTATaGGGTCCCCTTTCCCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: GTGLQVINNRLATAGPGRKQQQV*GPLSPV Trigger: CACAGGGGAAAGGGGACCCCATACCTGCTGCTGCTT...CCTGCCTGGCCCCGCTGTTGCAAGTCTGTTATTTATTACCTGGAGGCCTGTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR CAA 90 bp | CAGGTAATAAATAACAGACTTGCAACAGCGGGGCCAGGCAGGAAGTaGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: QVINNRLATAGPGRK*GPNGPGLKLWEFFR Trigger: CCTGAAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGCCTGGCCCCGCTGTTGCAAGTCTGTTATTTATTACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR CAA 90 bp | ATGCCTGAACCCATCCTCTCTGGGTCTAGTTCACCTGAGTCGATCTaGTTGAGGATGGTGCGCGCGCACTTGAGGAAAGCTTCTTCCACA | + |
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Preference number: 2 (lower is better) Translates to: MPEPILSGSSSPESI*LRMVRAHLRKASST Trigger: TGTGGAAGAAGCTTTCCTCAAGTGCGCGCGCACCATCCTCAACAAGATCGACTCAGGTGAACTAGACCCAGAGAGGATGGGTTCAGGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR-3UTR GCA 90 bp | ATGCTTTATGGAGGACCAGGACAGGATGGAACAGGCCTCCAGGTAATAAATAACCCTGTGGCTCAATCTTaGCCCACAGCCAGGCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: MLYGGPGQDGTGLQVINNPVAQS*PTARPH Trigger: GTGGGGCCTGGCTGTGGGGCAAGATTGAGCCACAGG...GTTATTTATTACCTGGAGGCCTGTTCCATCCTGTCCTGGTCCTCCATAAAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR-3UTR CAA 90 bp | GGCCTCTTGGGGCCTGGTTCTGAGCCCCAGCCTTCGGGCAGGGCTGGTCCAGAATTGGGGCCTGGCCTCTaGGGGCCTGGTTCTGAGCCC | + |
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Preference number: 3 (lower is better) Translates to: GLLGPGSEPQPSGRAGPELGPGL*GPGSEP Trigger: GGGCTCAGAACCAGGCCCCAAGAGGCCAGGCCCCAA...TTCTGGACCAGCCCTGCCCGAAGGCTGGGGCTCAGAACCAGGCCCCAAGAGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR-3UTR CAA 90 bp | GGGCCAGGCAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCCTGAGGGGCCACGGCTaGGGCGCTGCGAGGCTGCCG | + |
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Preference number: 3 (lower is better) Translates to: GPGRKLGPNGPGLKLWEFLRGHG*GAARLP Trigger: CGGCAGCCTCGCAGCGCCCAAGCCGTGGCCCCTCAG...GAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGCCTGGCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR-3UTR CAA 90 bp | GGCTGGTCCAGAAGAACAGGTGAGCTGGTTCTGCACATCTCAGCAGCCACAGGGTTGGGGCCTGGCCTCTaGGGGCCTGGTTCTGAGCCC | + |
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Preference number: 3 (lower is better) Translates to: GWSRRTGELVLHISAATGLGPGL*GPGSEP Trigger: GGGCTCAGAACCAGGCCCCAAGAGGCCAGGCCCCAA...CCCTGTGGCTGCTGAGATGTGCAGAACCAGCTCACCTGTTCTTCTGGACCAGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR TCA 72 bp | CCCAGCCTTCGGGCAGGGCTGGTCCAGAAGAACAGGTaGGCTGGTTCTGCACATCTCAGCAGCCACAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: PSLRAGLVQKNR*AGSAHLSSHRA Trigger: AGCCCTGTGGCTGCTGAGATGTGCAGAACCAGCTCACCTGTTCTTCTGGACCAGCCCTGCCCGAAGGCTGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR-3UTR CAA 90 bp | GGGGCCAGGCAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTATGGTGCGCGCGCACTaGAGGAAAGCTTCTTCCACA | + |
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Preference number: 3 (lower is better) Translates to: GARQEVGAKRPWSQALGVMVRAH*RKASST Trigger: TGTGGAAGAAGCTTTCCTCAAGTGCGCGCGCACCAT...AACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGCCTGGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR TCA 72 bp | GGCTGCCGCAGCTGGCGGAGGGATATGTCGCCATACTaGATGCCTGAACCCATCCTCTCTGGGTCTAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: GCRSWRRDMSPY*MPEPILSGSSS Trigger: TGAACTAGACCCAGAGAGGATGGGTTCAGGCATTCAGTATGGCGACATATCCCTCCGCCAGCTGCGGCAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR GCA 72 bp | GCCGCAGCTGGCGGAGGGATATGTCGCCATACTGAATaGCTGAACCCATCCTCTCTGGGTCTAGTTCACCTG | + |
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Preference number: 3 (lower is better) Translates to: AAAGGGICRHTE*LNPSSLGLVHL Trigger: CAGGTGAACTAGACCCAGAGAGGATGGGTTCAGGCATTCAGTATGGCGACATATCCCTCCGCCAGCTGCGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| 3UTR CCA 72 bp | ATAACAGACTTGCAACAGCGGGGCCAGGCAGGAAGTTaGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGT | + |
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Preference number: 3 (lower is better) Translates to: ITDLQQRGQAGS*GQTALVSSFGS Trigger: ACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGCCTGGCCCCGCTGTTGCAAGTCTGTTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR-3UTR CAA 90 bp | AGTTCTTCAGGTAGGGTTTGGGGCTCAGGGGGACTAGAGTTAGCCAAGGCAGAGCCCTGGTCTCAAGCTTaGGGAGTTCTTCAGGTAGGG | + |
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Preference number: 3 (lower is better) Translates to: SSSGRVWGSGGLELAKAEPWSQA*GVLQVG Trigger: CCCTACCTGAAGAACTCCCAAAGCTTGAGACCAGGG...CTCTGCCTTGGCTAACTCTAGTCCCCCTGAGCCCCAAACCCTACCTGAAGAACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR-3UTR CAA 90 bp | GTAAACAATGCTTTATGGAGGACCAGGACAGGATGGAACAGGCCTCCAGGTAATCCCTGGTCTCAAGCTTaGGGAGTTCTTCAGGTAGGG | + |
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Preference number: 3 (lower is better) Translates to: VNNALWRTRTGWNRPPGNPWSQA*GVLQVG Trigger: CCCTACCTGAAGAACTCCCAAAGCTTGAGACCAGGG...ATTACCTGGAGGCCTGTTCCATCCTGTCCTGGTCCTCCATAAAGCATTGTTTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR CCA 90 bp | GGCCTCTTGGGGCCTGGTTCTGAGCCCCAGCCTTCGGGCAGGGCTGGTCCAGAACCACGATGTTGGGGCTaGCCAGTGTCCGGGCATCAG | + |
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Preference number: 4 (lower is better) Translates to: GLLGPGSEPQPSGRAGPEPRCWG*PVSGHQ Trigger: CTGATGCCCGGACACTGGCCAGCCCCAACATCGTGG...TTCTGGACCAGCCCTGCCCGAAGGCTGGGGCTCAGAACCAGGCCCCAAGAGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS-3UTR TCA 90 bp | AAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTCAGGTAGGGTTTGGGGCTCAGCAGCAGCCACAGGGCTaGGGGGCCACGGCTTGGGCG | + |
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Preference number: 4 (lower is better) Translates to: KRPWSQALGVLQVGFGAQQQPQG*GATAWA Trigger: CGCCCAAGCCGTGGCCCCTCAGCCCTGTGGCTGCTG...CTGAGCCCCAAACCCTACCTGAAGAACTCCCAAAGCTTGAGACCAGGGCCGTTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS-3UTR GCA 90 bp | AGTTCTTCAGGTAGGGTTTGGGGCTCAGGGGGACTAGAGTTAGCCAAGGCAGAGCCACGGCTTGGGCGCTaGGAGGCTGCCGCAGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: SSSGRVWGSGGLELAKAEPRLGR*EAAAAG Trigger: GCCAGCTGCGGCAGCCTCGCAGCGCCCAAGCCGTGG...CTCTGCCTTGGCTAACTCTAGTCCCCCTGAGCCCCAAACCCTACCTGAAGAACT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS-3UTR TCA 90 bp | GGGCCAGGCAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTGTTGCCACAGAGGATaGCCACGATGTTGGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: GPGRKLGPNGPGLKLWEFCCHRG*PRCWGW Trigger: CCAGCCCCAACATCGTGGTCATCCTCTGTGGCAACA...GAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGCCTGGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS-3UTR GCA 90 bp | GAGGCTGCCGCAGCTGGCGGAGGGATATGTCGCCATACTGAATGCCTGAACCCACAGCAGGGCTCCAGCTaGCCCTCGGTAATAACTCCG | + |
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Preference number: 4 (lower is better) Translates to: EAAAAGGGICRHTECLNPQQGSS*PSVITP Trigger: CGGAGTTATTACCGAGGGGCAGCTGGAGCCCTGCTG...TGGGTTCAGGCATTCAGTATGGCGACATATCCCTCCGCCAGCTGCGGCAGCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTCAGGTACGAGGCTGCCGCAGCTaGCGGAGGGATATGTCGCCA | + |
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Preference number: 4 (lower is better) Translates to: QEVGAKRPWSQALGVLQVRGCRS*RRDMSP Trigger: TGGCGACATATCCCTCCGCCAGCTGCGGCAGCCTCG...TACCTGAAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| 3UTR CAA 72 bp | CAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTaGGGAGTTCTTCAGGTAGGGTTTGGGGCTCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: QEVGAKRPWSQA*GVLQVGFGAQG Trigger: CCCCTGAGCCCCAAACCCTACCTGAAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR GCA 90 bp | ATGCTTTATGGAGGACCAGGACAGGATGGAACAGGCCTCCAGGTAATAAATAACTGGGCGCTGCGAGGCTaGCGCAGCTGGCGGAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: MLYGGPGQDGTGLQVINNWALRG*RSWRRD Trigger: ATCCCTCCGCCAGCTGCGGCAGCCTCGCAGCGCCCA...GTTATTTATTACCTGGAGGCCTGTTCCATCCTGTCCTGGTCCTCCATAAAGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| 3UTR CAA 72 bp | CCCATCCTCTCTGGGTCTAGTTCACCTGAGTCGATCTaGTTGAGGATGGTGCGCGCGCACTTGAGGAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: PILSGSSSPESI*LRMVRAHLRKA Trigger: AGCTTTCCTCAAGTGCGCGCGCACCATCCTCAACAAGATCGACTCAGGTGAACTAGACCCAGAGAGGATGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| CDS-3UTR TCA 90 bp | GAGGCTGCCGCAGCTGGCGGAGGGATATGTCGCCATACTGAATGCCTGAACCCACAATCACCAGGAATTTaGAGAGGAAGTCGTAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: EAAAAGGGICRHTECLNPQSPGI*RGSRRS Trigger: AGACCTACGACTTCCTCTTCAAATTCCTGGTGATTG...TGGGTTCAGGCATTCAGTATGGCGACATATCCCTCCGCCAGCTGCGGCAGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| CDS-3UTR TCA 90 bp | TGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTCAGGTAGGGTTTGGATCAGCTCATTCTCCTaGGCAAAGCGAGAAGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: WGQTALVSSFGSSSGRVWISSFS*AKREAS Trigger: AGAGGCTTCTCGCTTTGCTCAGGAGAATGAGCTGAT...CCAAACCCTACCTGAAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS-3UTR CCA 90 bp | GCAGCTGGCGGAGGGATATGTCGCCATACTGAATGCCTGAACCCATCCTCTCTGTCCACGCCGATAGTGTaGTTGGAGTCCTGTTTGAAC | + |
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Preference number: 4 (lower is better) Translates to: AAGGGICRHTECLNPSSLSTPIV*LESCLN Trigger: GTTCAAACAGGACTCCAACCACACTATCGGCGTGGA...CAGAGAGGATGGGTTCAGGCATTCAGTATGGCGACATATCCCTCCGCCAGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| CDS-3UTR TCA 90 bp | ATCCTCTCTGGGTCTAGTTCACCTGAGTCGATCTTGTTGAGGATGGTGCGCGCGCTGGTGGAGAAGACATaGTTTGCCAGTTCCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: ILSGSSSPESILLRMVRALVEKT*FASSST Trigger: AGTGCTGGAACTGGCAAATCATGTCTTCTCCACCAG...CGCGCGCACCATCCTCAACAAGATCGACTCAGGTGAACTAGACCCAGAGAGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| CDS-3UTR GCA 90 bp | GGACCAGGACAGGATGGAACAGGCCTCCAGGTAATAAATAACAGACTTGCAACACAGCAGGGCTCCAGCTaGCCCTCGGTAATAACTCCG | + |
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Preference number: 4 (lower is better) Translates to: GPGQDGTGLQVINNRLATQQGSS*PSVITP Trigger: CGGAGTTATTACCGAGGGGCAGCTGGAGCCCTGCTG...TGTTGCAAGTCTGTTATTTATTACCTGGAGGCCTGTTCCATCCTGTCCTGGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTCAGGTATCCACGCCGATAGTGTaGTTGGAGTCCTGTTTGAAC | + |
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Preference number: 4 (lower is better) Translates to: QEVGAKRPWSQALGVLQVSTPIV*LESCLN Trigger: GTTCAAACAGGACTCCAACCACACTATCGGCGTGGA...TACCTGAAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| 3UTR CAA 72 bp | ATCCTCTCTGGGTCTAGTTCACCTGAGTCGATCTTGTaGAGGATGGTGCGCGCGCACTTGAGGAAAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: ILSGSSSPESIL*RMVRAHLRKAS Trigger: AGAAGCTTTCCTCAAGTGCGCGCGCACCATCCTCAACAAGATCGACTCAGGTGAACTAGACCCAGAGAGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| CDS-3UTR TCA 90 bp | GGAGGACCAGGACAGGATGGAACAGGCCTCCAGGTAATAAATAACAGACTTGCAAAGCCTCTAGGAAAGTaGCCTCACGCTCGGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: GGPGQDGTGLQVINNRLAKPLGK*PHARDP Trigger: TGGATCCCGAGCGTGAGGTCACTTTCCTAGAGGCTT...TGCAAGTCTGTTATTTATTACCTGGAGGCCTGTTCCATCCTGTCCTGGTCCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS-3UTR TCA 90 bp | CCAGGACAGGATGGAACAGGCCTCCAGGTAATAAATAACAGACTTGCAACAGCGGCCATACTGAATGCCTaGACCCATCCTCTCTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: PGQDGTGLQVINNRLATAAILNA*THPLWV Trigger: GACCCAGAGAGGATGGGTTCAGGCATTCAGTATGGC...CGCTGTTGCAAGTCTGTTATTTATTACCTGGAGGCCTGTTCCATCCTGTCCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS-3UTR GCA 90 bp | ATCCTCTCTGGGTCTAGTTCACCTGAGTCGATCTTGTTGAGGATGGTGCGCGCGGGAGAAGACATGATTTaGCAGTTCCAGCACTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: ILSGSSSPESILLRMVRAGEDMI*QFQHCQ Trigger: TTGGCAGTGCTGGAACTGGCAAATCATGTCTTCTCC...CGCGCGCACCATCCTCAACAAGATCGACTCAGGTGAACTAGACCCAGAGAGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153511.8 |
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| CDS-3UTR TCA 90 bp | GGAGGACCAGGACAGGATGGAACAGGCCTCCAGGTAATAAATAACAGACTTGCACTGGTGGAGAAGACATaGTTTGCCAGTTCCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: GGPGQDGTGLQVINNRLALVEKT*FASSST Trigger: AGTGCTGGAACTGGCAAATCATGTCTTCTCCACCAG...TGCAAGTCTGTTATTTATTACCTGGAGGCCTGTTCCATCCTGTCCTGGTCCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR GCA 90 bp | CCAGGACAGGATGGAACAGGCCTCCAGGTAATAAATAACAGACTTGCAACAGCGGGAGAAGACATGATTTaGCAGTTCCAGCACTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: PGQDGTGLQVINNRLATAGEDMI*QFQHCQ Trigger: TTGGCAGTGCTGGAACTGGCAAATCATGTCTTCTCC...CGCTGTTGCAAGTCTGTTATTTATTACCTGGAGGCCTGTTCCATCCTGTCCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR CCA 90 bp | CAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTCAGGTATTCTCAATAAACTGGTaGAGAAGACATGATTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: QEVGAKRPWSQALGVLQVFSINW*RRHDLP Trigger: TGGCAAATCATGTCTTCTCCACCAGTTTATTGAGAA...TACCTGAAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR CCA 90 bp | TTTGGGAGTTCTTCAGGTAGGGTTTGGGGCTCAGGGGGACTAGAGTTAGCCAAGTTCTCAATAAACTGGTaGAGAAGACATGATTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: FGSSSGRVWGSGGLELAKFSINW*RRHDLP Trigger: TGGCAAATCATGTCTTCTCCACCAGTTTATTGAGAA...CTTGGCTAACTCTAGTCCCCCTGAGCCCCAAACCCTACCTGAAGAACTCCCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR TCA 90 bp | ATGCTTTATGGAGGACCAGGACAGGATGGAACAGGCCTCCAGGTAATAAATAACCAATCACCAGGAATTTaGAGAGGAAGTCGTAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: MLYGGPGQDGTGLQVINNQSPGI*RGSRRS Trigger: AGACCTACGACTTCCTCTTCAAATTCCTGGTGATTG...GTTATTTATTACCTGGAGGCCTGTTCCATCCTGTCCTGGTCCTCCATAAAGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR CAA 90 bp | GGGGCCAGGCAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCAAGCAGCGAGTGAGTaGTATGTCTCCCGGCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: GARQEVGAKRPWSQALGVQAASE*YVSRLV Trigger: CACCAGCCGGGAGACATACAACTCACTCGCTGCTTG...AACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTGCCTGGCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS-3UTR CAA 90 bp | AGTTCTTCAGGTAGGGTTTGGGGCTCAGGGGGACTAGAGTTAGCCAAGGCAGAGAGGATGACCACGATGTaGGGGCTGGCCAGTGTCCGG | + |
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Preference number: 5 (lower is better) Translates to: SSSGRVWGSGGLELAKAERMTTM*GLASVR Trigger: CCGGACACTGGCCAGCCCCAACATCGTGGTCATCCT...CTCTGCCTTGGCTAACTCTAGTCCCCCTGAGCCCCAAACCCTACCTGAAGAACT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS-3UTR CAA 90 bp | CAGGAAGTTGGGGCCAAACGGCCCTGGTCTCAAGCTTTGGGAGTTCTTCAGGTAACGCCGATAGTGTGGTaGGAGTCCTGTTTGAACTTA | + |
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Preference number: 5 (lower is better) Translates to: QEVGAKRPWSQALGVLQVTPIVW*ESCLNL Trigger: TAAGTTCAAACAGGACTCCAACCACACTATCGGCGT...TACCTGAAGAACTCCCAAAGCTTGAGACCAGGGCCGTTTGGCCCCAACTTCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR CAA 90 bp | CCAGGACAGGATGGAACAGGCCTCCAGGTAATAAATAACAGACTTGCAACAGCGATGGTGCGCGCGCACTaGAGGAAAGCTTCTTCCACA | + |
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Preference number: 5 (lower is better) Translates to: PGQDGTGLQVINNRLATAMVRAH*RKASST Trigger: TGTGGAAGAAGCTTTCCTCAAGTGCGCGCGCACCAT...CGCTGTTGCAAGTCTGTTATTTATTACCTGGAGGCCTGTTCCATCCTGTCCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS CCA 90 bp | CCCCCAACGTTGACCACCCTGGATCCAAACTCCACGCCGATAGTGTaGTTGGAGTCCTGTTTGAACTTATTCTCAATAAACTGGTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: PPTLTTLDPNSTPIV*LESCLNLFSINWWR Trigger: TCTCCACCAGTTTATTGAGAATAAGTTCAAACAGGACTCCAACCACACTATCGGCGTGGAGTTTGGATCCAGGGTGGTCAACGTTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR CAA 90 bp | AGGTGTAAACAATGCTTTATGGAGGACCAGGACAGGATGGAACAGGCCTCCAGGACGCCGATAGTGTGGTaGGAGTCCTGTTTGAACTTA | + |
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Preference number: 5 (lower is better) Translates to: RCKQCFMEDQDRMEQASRTPIVW*ESCLNL Trigger: TAAGTTCAAACAGGACTCCAACCACACTATCGGCGT...CCTGGAGGCCTGTTCCATCCTGTCCTGGTCCTCCATAAAGCATTGTTTACACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR CAA 90 bp | TTTGGGAGTTCTTCAGGTAGGGTTTGGGGCTCAGGGGGACTAGAGTTAGCCAAGTGGTTGGAGTCCTGTTaGAACTTATTCTCAATAAAC | + |
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Preference number: 5 (lower is better) Translates to: FGSSSGRVWGSGGLELAKWLESC*NLFSIN Trigger: GTTTATTGAGAATAAGTTCAAACAGGACTCCAACCA...CTTGGCTAACTCTAGTCCCCCTGAGCCCCAAACCCTACCTGAAGAACTCCCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS-3UTR CAA 90 bp | AGGTGTAAACAATGCTTTATGGAGGACCAGGACAGGATGGAACAGGCCTCCAGGTGGTTGGAGTCCTGTTaGAACTTATTCTCAATAAAC | + |
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Preference number: 5 (lower is better) Translates to: RCKQCFMEDQDRMEQASRWLESC*NLFSIN Trigger: GTTTATTGAGAATAAGTTCAAACAGGACTCCAACCA...CCTGGAGGCCTGTTCCATCCTGTCCTGGTCCTCCATAAAGCATTGTTTACACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS CAA 72 bp | AGTGTCCGGGCATCAGTTAGCCAAGCAGCGAGTGAGTaGTATGTCTCCCGGCTGGTGATGTCATACACCAGC | + |
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Preference number: 6 (lower is better) Translates to: SVRASVSQAASE*YVSRLVMSYTS Trigger: GCTGGTGTATGACATCACCAGCCGGGAGACATACAACTCACTCGCTGCTTGGCTAACTGATGCCCGGACACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS CAA 90 bp | TCTAGTTCACCTGAGTCGATCTTGTTGAGGATGGTGCGCGCGCACTaGAGGAAAGCTTCTTCCACATTCTCACCCGTGAGAGCGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: SSSPESILLRMVRAH*RKASSTFSPVRALV Trigger: GACCAGCGCTCTCACGGGTGAGAATGTGGAAGAAGCTTTCCTCAAGTGCGCGCGCACCATCCTCAACAAGATCGACTCAGGTGAACTAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS CAA 72 bp | CCTGAGTCGATCTTGTTGAGGATGGTGCGCGCGCACTaGAGGAAAGCTTCTTCCACATTCTCACCCGTGAGA | + |
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Preference number: 6 (lower is better) Translates to: PESILLRMVRAH*RKASSTFSPVR Trigger: TCTCACGGGTGAGAATGTGGAAGAAGCTTTCCTCAAGTGCGCGCGCACCATCCTCAACAAGATCGACTCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093040.13 |
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| CDS CAA 90 bp | CCAACGTTGACCACCCTGGATCCAAACTCCACGCCGATAGTGTGGTaGGAGTCCTGTTTGAACTTATTCTCAATAAACTGGTGGAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: PTLTTLDPNSTPIVW*ESCLNLFSINWWRR Trigger: TCTTCTCCACCAGTTTATTGAGAATAAGTTCAAACAGGACTCCAACCACACTATCGGCGTGGAGTTTGGATCCAGGGTGGTCAACGTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS CAA 72 bp | ACCACCCTGGATCCAAACTCCACGCCGATAGTGTGGTaGGAGTCCTGTTTGAACTTATTCTCAATAAACTGG | + |
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Preference number: 6 (lower is better) Translates to: TTLDPNSTPIVW*ESCLNLFSINW Trigger: CCAGTTTATTGAGAATAAGTTCAAACAGGACTCCAACCACACTATCGGCGTGGAGTTTGGATCCAGGGTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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| CDS CCA 72 bp | TTGACCACCCTGGATCCAAACTCCACGCCGATAGTGTaGTTGGAGTCCTGTTTGAACTTATTCTCAATAAAC | + |
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Preference number: 6 (lower is better) Translates to: LTTLDPNSTPIV*LESCLNLFSIN Trigger: GTTTATTGAGAATAAGTTCAAACAGGACTCCAACCACACTATCGGCGTGGAGTTTGGATCCAGGGTGGTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093040.13 ENSMUST00000153511.8 |
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