Pregenerated sensors for RAB4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019478Ensembl transcript IDs: ENSMUST00000117702.2, ENSMUST00000118535.9, ENSMUST00000212846.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACAGCACGACCACTGGGCTCTCCCTGTCAGCCCGGTCTTTGCTTCTaGATGGTTGGGGGAGGAGCTCCTGCAGGGCCAGTCCTGTGGGGA | + |
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Preference number: 1 (lower is better) Translates to: TARPLGSPCQPGLCF*MVGGGAPAGPVLWG Trigger: TCCCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCTGACAGGGAGAGCCCAGTGGTCGTGCTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR CCA 90 bp | CACGACCACTGGGCTCTCCCTGTCAGCCCGGTCTTTGCTTCTGAATaGTTGGGGGAGGAGCTCCTGCAGGGCCAGTCCTGTGGGGATGAC | + |
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Preference number: 1 (lower is better) Translates to: HDHWALPVSPVFASE*LGEELLQGQSCGDD Trigger: GTCATCCCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCTGACAGGGAGAGCCCAGTGGTCGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR CCA 90 bp | ACCACTGGGCTCTCCCTGTCAGCCCGGTCTTTGCTTCTGAATGGTTaGGGGAGGAGCTCCTGCAGGGCCAGTCCTGTGGGGATGACCTCT | + |
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Preference number: 1 (lower is better) Translates to: TTGLSLSARSLLLNG*GRSSCRASPVGMTS Trigger: AGAGGTCATCCCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCTGACAGGGAGAGCCCAGTGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR TCA 90 bp | CTAGCAGCCACACTCCTGTGCACTTGGAGCCTGTGTACGCCGAGGTaGCCGCAGCTGTCTCAGGGCAGCGTCTCCATACTGGATGCCAGA | + |
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Preference number: 1 (lower is better) Translates to: LAATLLCTWSLCTPR*PQLSQGSVSILDAR Trigger: TCTGGCATCCAGTATGGAGACGCTGCCCTGAGACAGCTGCGGTCACCTCGGCGTACACAGGCTCCAAGTGCACAGGAGTGTGGCTGCTAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212846.2 |
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| 3UTR TCA 90 bp | CTAGTTCTGGAGATGCTCCGGTTAGGTCGAGTGCACTCCGTGGTTTaGGTGAAGAATGGCTACAGCACGACCACTGGGCTCTCCCTGTCA | + |
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Preference number: 1 (lower is better) Translates to: LVLEMLRLGRVHSVV*VKNGYSTTTGLSLS Trigger: TGACAGGGAGAGCCCAGTGGTCGTGCTGTAGCCATTCTTCACTCAAACCACGGAGTGCACTCGACCTAACCGGAGCATCTCCAGAACTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR TCA 90 bp | TCCCCAACAAAAATGTCCACTATGGTAAATGGGAGAGGGCGCTACTaGAAGTTTAGCGGAGAGCTTGCTAGTTCTGGAGATGCTCCGGTT | + |
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Preference number: 1 (lower is better) Translates to: SPTKMSTMVNGRGRY*KFSGELASSGDAPV Trigger: AACCGGAGCATCTCCAGAACTAGCAAGCTCTCCGCTAAACTTTCAGTAGCGCCCTCTCCCATTTACCATAGTGGACATTTTTGTTGGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR GCA 90 bp | TCCAGTTCACCTGATTCAATTTTGTTAAGTATTTTCCTTGCACACTaGATGAAAGCCTCTTCGACGTTCTCGCCAGTCAGTGCACTGGTT | + |
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Preference number: 1 (lower is better) Translates to: SSSPDSILLSIFLAH*MKASSTFSPVSALV Trigger: AACCAGTGCACTGACTGGCGAGAACGTCGAAGAGGCTTTCATGCAGTGTGCAAGGAAAATACTTAACAAAATTGAATCAGGTGAACTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212846.2 |
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| 3UTR-3UTR TCA 90 bp | AGCTGTCTCAGGGCAGCGTCTCCATACTGGATGCCAGAGCCCATCCTCTCGGGGTCCAGGACCCACCGCTaGACCTGTGTCACTGGGGCG | + |
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Preference number: 2 (lower is better) Translates to: SCLRAASPYWMPEPILSGSRTHR*TCVTGA Trigger: CGCCCCAGTGACACAGGTTCAGCGGTGGGTCCTGGA...CCCCGAGAGGATGGGCTCTGGCATCCAGTATGGAGACGCTGCCCTGAGACAGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212846.2 |
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| 3UTR CAA 90 bp | GACCACTGGGCTCTCCCTGTCAGCCCGGTCTTTGCTTCTGAATGGTaGGGGGAGGAGCTCCTGCAGGGCCAGTCCTGTGGGGATGACCTC | + |
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Preference number: 2 (lower is better) Translates to: DHWALPVSPVFASEW*GEELLQGQSCGDDL Trigger: GAGGTCATCCCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCTGACAGGGAGAGCCCAGTGGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCCGGTCTTTGCTTCTGAATGGTTGGGGGAGGAGCTCCTGCAGGGCCAGTCCTCCTTCCTGCCAGGATaGAGGGCCCCCAACATCCAC | + |
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Preference number: 2 (lower is better) Translates to: SPVFASEWLGEELLQGQSSFLPG*RAPNIH Trigger: GTGGATGTTGGGGGCCCTGCATCCTGGCAGGAAGGA...GGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR-3UTR GCA 90 bp | TTTGCTTCTGAATGGTTGGGGGAGGAGCTCCTGCAGGGCCAGTCCTGTGGGGATACAGCCCCTCCTTCCTaGCAGGATGCAGGGCCCCCA | + |
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Preference number: 2 (lower is better) Translates to: FASEWLGEELLQGQSCGDTAPPS*QDAGPP Trigger: TGGGGGCCCTGCATCCTGGCAGGAAGGAGGGGCTGT...ATCCCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR-3UTR GCA 90 bp | AGTGCACTCCGTGGTTTGAGTGAAGAATGGCTACAGCACGACCACTGGGCTCTCTGGGGGAGGAGCTCCTaGAGGGCCAGTCCTGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: SALRGLSEEWLQHDHWALWGRSS*RASPVG Trigger: CCCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCA...GAGAGCCCAGTGGTCGTGCTGTAGCCATTCTTCACTCAAACCACGGAGTGCACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR-3UTR TCA 90 bp | GCTGCCAGCGTACACCGTTCCCCAGGAAGATCTACTTCTGTGCCGAGTAGAAAATCCAGGACCCACCGCTaGACCTGTGTCACTGGGGCG | + |
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Preference number: 2 (lower is better) Translates to: AASVHRSPGRSTSVPSRKSRTHR*TCVTGA Trigger: CGCCCCAGTGACACAGGTTCAGCGGTGGGTCCTGGA...TTTTCTACTCGGCACAGAAGTAGATCTTCCTGGGGAACGGTGTACGCTGGCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118535.9 ENSMUST00000212846.2 |
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| 3UTR-3UTR TCA 90 bp | GCACTCCGTGGTTTGAGTGAAGAATGGCTACAGCACGACCACTGGGCTCTCCCTCCCGGTCTTTGCTTCTaGATGGTTGGGGGAGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: ALRGLSEEWLQHDHWALPPGLCF*MVGGGA Trigger: AGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGG...AGGGAGAGCCCAGTGGTCGTGCTGTAGCCATTCTTCACTCAAACCACGGAGTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGCCAGCGTACACCGTTCCCCAGGAAGATCTACTTCTGTGCCGAGTAGAAAAACCGGCTCTGTGCTGTaGGAACGTGCTGTGGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: AASVHRSPGRSTSVPSRKTGSVL*ERAVGS Trigger: GCTGCCCACAGCACGTTCCCACAGCACAGAGCCGGT...TTTTCTACTCGGCACAGAAGTAGATCTTCCTGGGGAACGGTGTACGCTGGCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| 3UTR CAA 90 bp | GCTAGTTCTGGAGATGCTCCGGTTAGGTCGAGTGCACTCCGTGGTTaGAGTGAAGAATGGCTACAGCACGACCACTGGGCTCTCCCTGTC | + |
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Preference number: 2 (lower is better) Translates to: ASSGDAPVRSSALRG*SEEWLQHDHWALPV Trigger: GACAGGGAGAGCCCAGTGGTCGTGCTGTAGCCATTCTTCACTCAAACCACGGAGTGCACTCGACCTAACCGGAGCATCTCCAGAACTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR-3UTR TCA 90 bp | CGGCTGCCAGCGTACACCGTTCCCCAGGAAGATCTACTTCTGTGCCGAGTAGAAGGATTTAACAGAACGTaGAGGGTACGTGTGGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: RLPAYTVPQEDLLLCRVEGFNRT*RVRVGQ Trigger: CTGCCCCACACGTACCCTTCACGTTCTGTTAAATCC...TTCTACTCGGCACAGAAGTAGATCTTCCTGGGGAACGGTGTACGCTGGCAGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| 3UTR-3UTR GCA 90 bp | GCTGCCAGCGTACACCGTTCCCCAGGAAGATCTACTTCTGTGCCGAGTAGAAAACGTCTCCATACTGGATaGCAGAGCCCATCCTCTCGG | + |
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Preference number: 2 (lower is better) Translates to: AASVHRSPGRSTSVPSRKRLHTG*QSPSSR Trigger: CCGAGAGGATGGGCTCTGGCATCCAGTATGGAGACG...TTTTCTACTCGGCACAGAAGTAGATCTTCCTGGGGAACGGTGTACGCTGGCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212846.2 |
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| 3UTR-3UTR CCA 90 bp | GCACTCCGTGGTTTGAGTGAAGAATGGCTACAGCACGACCACTGGGCTCTCCCTGTCTTTGCTTCTGAATaGTTGGGGGAGGAGCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: ALRGLSEEWLQHDHWALPVFASE*LGEELL Trigger: CAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGAC...AGGGAGAGCCCAGTGGTCGTGCTGTAGCCATTCTTCACTCAAACCACGGAGTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR-3UTR GCA 90 bp | CTCAACTTCCCCAACAAAAATGTCCACTATGGTAAATGGGAGAGGGCGCTACTGCTCTTCACCTCCTACTaGAGTTTTACAGCCCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: LNFPNKNVHYGKWERALLLFTSY*SFTAPP Trigger: AGGAGGGGCTGTAAAACTGCAGTAGGAGGTGAAGAG...CAGTAGCGCCCTCTCCCATTTACCATAGTGGACATTTTTGTTGGGGAAGTTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR-3UTR GCA 90 bp | AACCAACACAAGGAGGAAAGCACGCTCACGTTCATGACTGCATCTCCTGGGAGTGAAGATCTACTTCTGTaGCGAGTAGAAAAGATGGTA | + |
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Preference number: 2 (lower is better) Translates to: NQHKEESTLTFMTASPGSEDLLL*RVEKMV Trigger: TACCATCTTTTCTACTCGGCACAGAAGTAGATCTTC...ACTCCCAGGAGATGCAGTCATGAACGTGAGCGTGCTTTCCTCCTTGTGTTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| 3UTR CCA 72 bp | CTCTCCCTGTCAGCCCGGTCTTTGCTTCTGAATGGTTaGGGGAGGAGCTCCTGCAGGGCCAGTCCTGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: LSLSARSLLLNG*GRSSCRASPVG Trigger: CCCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCTGACAGGGAGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR CCA 72 bp | TGGGCTCTCCCTGTCAGCCCGGTCTTTGCTTCTGAATaGTTGGGGGAGGAGCTCCTGCAGGGCCAGTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: WALPVSPVFASE*LGEELLQGQSC Trigger: ACAGGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCTGACAGGGAGAGCCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR TCA 72 bp | ACACTCCTGTGCACTTGGAGCCTGTGTACGCCGAGGTaGCCGCAGCTGTCTCAGGGCAGCGTCTCCATACTG | + |
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Preference number: 3 (lower is better) Translates to: TLLCTWSLCTPR*PQLSQGSVSIL Trigger: CAGTATGGAGACGCTGCCCTGAGACAGCTGCGGTCACCTCGGCGTACACAGGCTCCAAGTGCACAGGAGTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212846.2 |
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| 3UTR GCA 72 bp | CGGTCTTTGCTTCTGAATGGTTGGGGGAGGAGCTCCTaGAGGGCCAGTCCTGTGGGGATGACCTCTGACTAT | + |
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Preference number: 3 (lower is better) Translates to: RSLLLNGWGRSS*RASPVGMTSDY Trigger: ATAGTCAGAGGTCATCCCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR TCA 72 bp | GAGATGCTCCGGTTAGGTCGAGTGCACTCCGTGGTTTaGGTGAAGAATGGCTACAGCACGACCACTGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: EMLRLGRVHSVV*VKNGYSTTTGL Trigger: GAGCCCAGTGGTCGTGCTGTAGCCATTCTTCACTCAAACCACGGAGTGCACTCGACCTAACCGGAGCATCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR TCA 72 bp | GTGCTGTGGGCAGCACAAGCTGGATTTAACAGAACGTaGAGGGTACGTGTGGGGCAGGGGTCTGCATACATG | + |
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Preference number: 3 (lower is better) Translates to: VLWAAQAGFNRT*RVRVGQGSAYM Trigger: CATGTATGCAGACCCCTGCCCCACACGTACCCTTCACGTTCTGTTAAATCCAGCTTGTGCTGCCCACAGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| 3UTR TCA 72 bp | AACTGCATTTCCTGGGAGTTTAAAAAGAAAGCTCACTaGGTGCAGGGTTCTGTCATGTCACACCGGCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: NCISWEFKKKAH*VQGSVMSHRLC Trigger: ACAGAGCCGGTGTGACATGACAGAACCCTGCACTCAGTGAGCTTTCTTTTTAAACTCCCAGGAAATGCAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| 3UTR TCA 72 bp | AAAATGTCCACTATGGTAAATGGGAGAGGGCGCTACTaGAAGTTTAGCGGAGAGCTTGCTAGTTCTGGAGAT | + |
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Preference number: 3 (lower is better) Translates to: KMSTMVNGRGRY*KFSGELASSGD Trigger: ATCTCCAGAACTAGCAAGCTCTCCGCTAAACTTTCAGTAGCGCCCTCTCCCATTTACCATAGTGGACATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| 3UTR CAA 72 bp | GCTCTCCCTGTCAGCCCGGTCTTTGCTTCTGAATGGTaGGGGGAGGAGCTCCTGCAGGGCCAGTCCTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: ALPVSPVFASEW*GEELLQGQSCG Trigger: CCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCTGACAGGGAGAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR CCA 90 bp | CCTCCTTCCTGCCAGGATGCAGGGCCCCCAACATCCACCTGTGTCACTGGGGCGGCAGCGTCTCCATACTaGATGCCAGAGCCCATCCTC | + |
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Preference number: 4 (lower is better) Translates to: PPSCQDAGPPTSTCVTGAAASPY*MPEPIL Trigger: GAGGATGGGCTCTGGCATCCAGTATGGAGACGCTGC...CGCCCCAGTGACACAGGTGGATGTTGGGGGCCCTGCATCCTGGCAGGAAGGAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR GCA 90 bp | CTCCAGCCTCTTCAGGCTCCGGCGGCTGTACTCCAGGACCCACCGCTGAACCTGCAGCTCATTCTCTTGTaGGAACCTGGAGGCTTCGAG | + |
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Preference number: 4 (lower is better) Translates to: LQPLQAPAAVLQDPPLNLQLILL*EPGGFE Trigger: CTCGAAGCCTCCAGGTTCGCACAAGAGAATGAGCTG...CAGGTTCAGCGGTGGGTCCTGGAGTACAGCCGCCGGAGCCTGAAGAGGCTGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| CDS-3UTR GCA 90 bp | AGCCCGGTCTTTGCTTCTGAATGGTTGGGGGAGGAGCTCCTGCAGGGCCAGTCCCGTCTCCATACTGGATaGCAGAGCCCATCCTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SPVFASEWLGEELLQGQSRLHTG*QSPSSR Trigger: CCGAGAGGATGGGCTCTGGCATCCAGTATGGAGACG...GGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR GCA 90 bp | AGCCCGGTCTTTGCTTCTGAATGGTTGGGGGAGGAGCTCCTGCAGGGCCAGTCCCAGCTCATTCTCTTGTaGGAACCTGGAGGCTTCGAG | + |
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Preference number: 4 (lower is better) Translates to: SPVFASEWLGEELLQGQSQLILL*EPGGFE Trigger: CTCGAAGCCTCCAGGTTCGCACAAGAGAATGAGCTG...GGACTGGCCCTGCAGGAGCTCCTCCCCCAACCATTCAGAAGCAAAGACCGGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR TCA 90 bp | GTAAAAACTCCAGCCTCTTCAGGCTCCGGCGGCTGTACTCCAGGACCCACCGCTTCCTTGCACACTGCATaGAAGCCTCTTCGACGTTCT | + |
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Preference number: 4 (lower is better) Translates to: VKTPASSGSGGCTPGPTASLHTA*KPLRRS Trigger: AGAACGTCGAAGAGGCTTTCATGCAGTGTGCAAGGA...AGCGGTGGGTCCTGGAGTACAGCCGCCGGAGCCTGAAGAGGCTGGAGTTTTTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| CDS-3UTR CCA 90 bp | GTAGTAAAAACTCCAGCCTCTTCAGGCTCCGGCGGCTGTACTCCAGGACCCACCCGCCAGTCAGTGCACTaGTTTCCAGGAACATCAGCT | + |
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Preference number: 4 (lower is better) Translates to: VVKTPASSGSGGCTPGPTRQSVH*FPGTSA Trigger: AGCTGATGTTCCTGGAAACCAGTGCACTGACTGGCG...GGTGGGTCCTGGAGTACAGCCGCCGGAGCCTGAAGAGGCTGGAGTTTTTACTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| CDS-3UTR GCA 90 bp | GGGGGAGAGGGATTAAATAAGAAACGCACTGGCTGTTCACACCAGAGTCCTTTCCGTCTCCATACTGGATaGCAGAGCCCATCCTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: GGEGLNKKRTGCSHQSPFRLHTG*QSPSSR Trigger: CCGAGAGGATGGGCTCTGGCATCCAGTATGGAGACG...GAAAGGACTCTGGTGTGAACAGCCAGTGCGTTTCTTATTTAATCCCTCTCCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| CDS-3UTR GCA 90 bp | GCCTCAACTTCCCCAACAAAAATGTCCACTATGGTAAATGGGAGAGGGCGCTACGCAGCCACACTCCTGTaGACTTGGAGCCTGTGTACG | + |
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Preference number: 4 (lower is better) Translates to: ASTSPTKMSTMVNGRGRYAATLL*TWSLCT Trigger: CGTACACAGGCTCCAAGTGCACAGGAGTGTGGCTGC...GTAGCGCCCTCTCCCATTTACCATAGTGGACATTTTTGTTGGGGAAGTTGAGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR CCA 90 bp | GGGGGAGAGGGATTAAATAAGAAACGCACTGGCTGTTCACACCAGAGTCCTTTCGCAGCGTCTCCATACTaGATGCCAGAGCCCATCCTC | + |
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Preference number: 4 (lower is better) Translates to: GGEGLNKKRTGCSHQSPFAASPY*MPEPIL Trigger: GAGGATGGGCTCTGGCATCCAGTATGGAGACGCTGC...GAAAGGACTCTGGTGTGAACAGCCAGTGCGTTTCTTATTTAATCCCTCTCCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| CDS-3UTR TCA 90 bp | GTAAAAACTCCAGCCTCTTCAGGCTCCGGCGGCTGTACTCCAGGACCCACCGCTTCCACTCCTATGGTATaGTTTGAGTCATCTTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: VKTPASSGSGGCTPGPTASTPMV*FESSLN Trigger: ATTCAAAGATGACTCAAATCATACCATAGGAGTGGA...AGCGGTGGGTCCTGGAGTACAGCCGCCGGAGCCTGAAGAGGCTGGAGTTTTTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| CDS-3UTR CCA 90 bp | CTCAACTTCCCCAACAAAAATGTCCACTATGGTAAATGGGAGAGGGCGCTACTGCGCCAGTCAGTGCACTaGTTTCCAGGAACATCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LNFPNKNVHYGKWERALLRQSVH*FPGTSA Trigger: AGCTGATGTTCCTGGAAACCAGTGCACTGACTGGCG...CAGTAGCGCCCTCTCCCATTTACCATAGTGGACATTTTTGTTGGGGAAGTTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR TCA 90 bp | CTCAACTTCCCCAACAAAAATGTCCACTATGGTAAATGGGAGAGGGCGCTACTGTCCTTGCACACTGCATaGAAGCCTCTTCGACGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LNFPNKNVHYGKWERALLSLHTA*KPLRRS Trigger: AGAACGTCGAAGAGGCTTTCATGCAGTGTGCAAGGA...CAGTAGCGCCCTCTCCCATTTACCATAGTGGACATTTTTGTTGGGGAAGTTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR TCA 90 bp | GCCTCAACTTCCCCAACAAAAATGTCCACTATGGTAAATGGGAGAGGGCGCTACGGGGTCCAGTTCACCTaGTTCAATTTTGTTAAGTAT | + |
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Preference number: 4 (lower is better) Translates to: ASTSPTKMSTMVNGRGRYGVQFT*FNFVKY Trigger: ATACTTAACAAAATTGAATCAGGTGAACTGGACCCC...GTAGCGCCCTCTCCCATTTACCATAGTGGACATTTTTGTTGGGGAAGTTGAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR TCA 90 bp | GCCTCAACTTCCCCAACAAAAATGTCCACTATGGTAAATGGGAGAGGGCGCTACTCCACTCCTATGGTATaGTTTGAGTCATCTTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: ASTSPTKMSTMVNGRGRYSTPMV*FESSLN Trigger: ATTCAAAGATGACTCAAATCATACCATAGGAGTGGA...GTAGCGCCCTCTCCCATTTACCATAGTGGACATTTTTGTTGGGGAAGTTGAGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR CAA 90 bp | TGGGGGAGGAGCTCCTGCAGGGCCAGTCCTGTGGGGATGACCTCTGACTATTCCCATCAGCTCATTCTCTaGTGCGAACCTGGAGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: WGRSSCRASPVGMTSDYSHQLIL*CEPGGF Trigger: GAAGCCTCCAGGTTCGCACAAGAGAATGAGCTGATG...GGAATAGTCAGAGGTCATCCCCACAGGACTGGCCCTGCAGGAGCTCCTCCCCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS GCA 90 bp | GCCAGTCAGTGCACTGGTTTCCAGGAACATCAGCTCATTCTCTTGTaGGAACCTGGAGGCTTCGAGGAAGGTGACTTCCCGGTCGGCATC | + |
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Preference number: 5 (lower is better) Translates to: ASQCTGFQEHQLILL*EPGGFEEGDFPVGI Trigger: GATGCCGACCGGGAAGTCACCTTCCTCGAAGCCTCCAGGTTCGCACAAGAGAATGAGCTGATGTTCCTGGAAACCAGTGCACTGACTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117702.2 ENSMUST00000118535.9 |
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| CDS TCA 90 bp | GAGGATAAGGACGATGTTCTGGCTCGCCAGCATTCTGGCATCTGGTaGTGTCATAGACAAGGAGTGCCCCAGCTGCACCTCTGTAGTAGC | + |
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Preference number: 5 (lower is better) Translates to: EDKDDVLARQHSGIW*CHRQGVPQLHLCSS Trigger: GCTACTACAGAGGTGCAGCTGGGGCACTCCTTGTCTATGACATCACCAGATGCCAGAATGCTGGCGAGCCAGAACATCGTCCTTATCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212846.2 |
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| CDS GCA 90 bp | CCTTGCACACTGCATGAAAGCCTCTTCGACGTTCTCGCCAGTCAGTaGACTGGTTTCCAGGAACATCAGCTCATTCTCTTGTGCGAACCT | + |
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Preference number: 5 (lower is better) Translates to: PCTLHESLFDVLASQ*TGFQEHQLILLCEP Trigger: AGGTTCGCACAAGAGAATGAGCTGATGTTCCTGGAAACCAGTGCACTGACTGGCGAGAACGTCGAAGAGGCTTTCATGCAGTGTGCAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117702.2 ENSMUST00000118535.9 |
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| CDS-3UTR CAA 90 bp | CTGGATTTAACAGAACGTGAAGGGTACGTGTGGGGCAGGGGTCTGCATACATGTCATCAGCTCATTCTCTaGTGCGAACCTGGAGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: LDLTEREGYVWGRGLHTCHQLIL*CEPGGF Trigger: GAAGCCTCCAGGTTCGCACAAGAGAATGAGCTGATG...ACATGTATGCAGACCCCTGCCCCACACGTACCCTTCACGTTCTGTTAAATCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| CDS-3UTR CAA 90 bp | TCATGTCACACCGGCTCTGTGCTGTGGGAACGTGCTGTGGGCAGCACAAGCTGGCGACATTTATTATCTTaGAGCCAAATTCCACTCCTA | + |
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Preference number: 5 (lower is better) Translates to: SCHTGSVLWERAVGSTSWRHLLS*SQIPLL Trigger: TAGGAGTGGAATTTGGCTCAAAGATAATAAATGTCG...CCAGCTTGTGCTGCCCACAGCACGTTCCCACAGCACAGAGCCGGTGTGACATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118535.9 |
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| CDS-3UTR CAA 90 bp | AGTGCACTCCGTGGTTTGAGTGAAGAATGGCTACAGCACGACCACTGGGCTCTCCGACATTTATTATCTTaGAGCCAAATTCCACTCCTA | + |
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Preference number: 5 (lower is better) Translates to: SALRGLSEEWLQHDHWALRHLLS*SQIPLL Trigger: TAGGAGTGGAATTTGGCTCAAAGATAATAAATGTCG...GAGAGCCCAGTGGTCGTGCTGTAGCCATTCTTCACTCAAACCACGGAGTGCACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117702.2 |
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| CDS-3UTR CAA 90 bp | ATTTTCCTTGCACACTGCATGAAAGCCTCTTCGACGTTCTCGCCAGTCAGTGCACGACATTTATTATCTTaGAGCCAAATTCCACTCCTA | + |
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Preference number: 5 (lower is better) Translates to: IFLAHCMKASSTFSPVSARHLLS*SQIPLL Trigger: TAGGAGTGGAATTTGGCTCAAAGATAATAAATGTCG...TGCACTGACTGGCGAGAACGTCGAAGAGGCTTTCATGCAGTGTGCAAGGAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212846.2 |
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| CDS CAA 90 bp | GAGGCTTCGAGGAAGGTGACTTCCCGGTCGGCATCCAAGTCCTTCTaGTTCCCGCAGAGGATAAGGACGATGTTCTGGCTCGCCAGCATT | + |
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Preference number: 6 (lower is better) Translates to: EASRKVTSRSASKSF*FPQRIRTMFWLASI Trigger: AATGCTGGCGAGCCAGAACATCGTCCTTATCCTCTGCGGGAACAAGAAGGACTTGGATGCCGACCGGGAAGTCACCTTCCTCGAAGCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000117702.2 ENSMUST00000118535.9 ENSMUST00000212846.2 |
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| CDS TCA 72 bp | GACGATGTTCTGGCTCGCCAGCATTCTGGCATCTGGTaGTGTCATAGACAAGGAGTGCCCCAGCTGCACCTC | + |
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Preference number: 6 (lower is better) Translates to: DDVLARQHSGIW*CHRQGVPQLHL Trigger: GAGGTGCAGCTGGGGCACTCCTTGTCTATGACATCACCAGATGCCAGAATGCTGGCGAGCCAGAACATCGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212846.2 |
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| CDS CAA 72 bp | AGGAAGGTGACTTCCCGGTCGGCATCCAAGTCCTTCTaGTTCCCGCAGAGGATAAGGACGATGTTCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RKVTSRSASKSF*FPQRIRTMFWL Trigger: GAGCCAGAACATCGTCCTTATCCTCTGCGGGAACAAGAAGGACTTGGATGCCGACCGGGAAGTCACCTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000117702.2 ENSMUST00000118535.9 ENSMUST00000212846.2 |
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