Pregenerated sensors for RAB42 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000089687

Ensembl transcript IDs: ENSMUST00000040411.7

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	TCCTCCTGTGTCACCAGAGAGTCTGAGGCAGTTACCACTTTAACCCTTTCTCTCCCCAGAGCTGCAGTTTaGCTCGCAGCCCAGCGGGTA	+
Preference number: 4 (lower is better) Translates to: SSCVTRESEAVTTLTLSLPRAAV*LAAQRV Trigger: TACCCGCTGGGCTGCGAGTCAAACTGCAGCTCTGGG...GAGAGAAAGGGTTAAAGTGGTAACTGCCTCAGACTCTCTGGTGACACAGGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS-3UTR TCA 90 bp	TCCTCCTGTGTCACCAGAGAGTCTGAGGCAGTTACCACTTTAACCCTTTCTCTCTGGCCGAGGTCTCCATaGAGCCCATGCCCAGAGAGG	+
Preference number: 4 (lower is better) Translates to: SSCVTRESEAVTTLTLSLWPRSP*SPCPER Trigger: CCTCTCTGGGCATGGGCTTCATGGAGACCTCGGCCA...GAGAGAAAGGGTTAAAGTGGTAACTGCCTCAGACTCTCTGGTGACACAGGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS-3UTR GCA 90 bp	TTGTCCTCCTGTGTCACCAGAGAGTCTGAGGCAGTTACCACTTTAACCCTTTCTGTAGCAGTGACGTCTTaGCCACCCCTGCGTCCCCGA	+
Preference number: 4 (lower is better) Translates to: LSSCVTRESEAVTTLTLSVAVTS*PPLRPR Trigger: TCGGGGACGCAGGGGTGGGCAAGACGTCACTGCTAC...AGAAAGGGTTAAAGTGGTAACTGCCTCAGACTCTCTGGTGACACAGGAGGACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS-3UTR GCA 90 bp	TCCTCCTGTGTCACCAGAGAGTCTGAGGCAGTTACCACTTTAACCCTTTCTCTCAGGCCAGGTCGACATTaGAGTTGCTTTTGGCCGAGG	+
Preference number: 4 (lower is better) Translates to: SSCVTRESEAVTTLTLSLRPGRH*SCFWPR Trigger: CCTCGGCCAAAAGCAACTGCAATGTCGACCTGGCCT...GAGAGAAAGGGTTAAAGTGGTAACTGCCTCAGACTCTCTGGTGACACAGGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS-3UTR GCA 90 bp	TTGTCCTCCTGTGTCACCAGAGAGTCTGAGGCAGTTACCACTTTAACCCTTTCTGGCAGCAAGTTCCTCTaGTTCCTGAGAGGATACGCA	+
Preference number: 4 (lower is better) Translates to: LSSCVTRESEAVTTLTLSGSKFL*FLRGYA Trigger: TGCGTATCCTCTCAGGAAGCAGAGGAACTTGCTGCC...AGAAAGGGTTAAAGTGGTAACTGCCTCAGACTCTCTGGTGACACAGGAGGACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS-3UTR GCA 90 bp	TTGTCCTCCTGTGTCACCAGAGAGTCTGAGGCAGTTACCACTTTAACCCTTTCTCATGTGCCTGAGTCCTaGTTCCTGCTAGAGGATCTA	+
Preference number: 4 (lower is better) Translates to: LSSCVTRESEAVTTLTLSHVPES*FLLEDL Trigger: TAGATCCTCTAGCAGGAAGCAGGACTCAGGCACATG...AGAAAGGGTTAAAGTGGTAACTGCCTCAGACTCTCTGGTGACACAGGAGGACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS GCA 90 bp	CGAGGTCTCCATGAAGCCCATGCCCAGAGAGGCAGCAAGTTCCTCTaGTTCCTGAGAGGATACGCATCGGGTGTTCAGGTCACACTTGTG	+
Preference number: 5 (lower is better) Translates to: RGLHEAHAQRGSKFL*FLRGYASGVQVTLV Trigger: CACAAGTGTGACCTGAACACCCGATGCGTATCCTCTCAGGAAGCAGAGGAACTTGCTGCCTCTCTGGGCATGGGCTTCATGGAGACCTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS-3UTR CAA 90 bp	TTGTCCTCCTGTGTCACCAGAGAGTCTGAGGCAGTTACCACTTTAACCCTTTCTTCCCAGAGCTGCAGTTaGACTCGCAGCCCAGCGGGT	+
Preference number: 5 (lower is better) Translates to: LSSCVTRESEAVTTLTLSSQSCS*TRSPAG Trigger: ACCCGCTGGGCTGCGAGTCAAACTGCAGCTCTGGGA...AGAAAGGGTTAAAGTGGTAACTGCCTCAGACTCTCTGGTGACACAGGAGGACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS-3UTR CAA 90 bp	TCCTCCTGTGTCACCAGAGAGTCTGAGGCAGTTACCACTTTAACCCTTTCTCTCAGGTCGACATTGCAGTaGCTTTTGGCCGAGGTCTCC	+
Preference number: 5 (lower is better) Translates to: SSCVTRESEAVTTLTLSLRSTLQ*LLAEVS Trigger: GGAGACCTCGGCCAAAAGCAACTGCAATGTCGACCT...GAGAGAAAGGGTTAAAGTGGTAACTGCCTCAGACTCTCTGGTGACACAGGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS TCA 72 bp	CCCATGCCCAGAGAGGCAGCAAGTTCCTCTGCTTCCTaGGAGGATACGCATCGGGTGTTCAGGTCACACTTG	+
Preference number: 6 (lower is better) Translates to: PMPREAASSSAS*EDTHRVFRSHL Trigger: CAAGTGTGACCTGAACACCCGATGCGTATCCTCTCAGGAAGCAGAGGAACTTGCTGCCTCTCTGGGCATGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040411.7
CDS GCA 72 bp	CATGAAGCCCATGCCCAGAGAGGCAGCAAGTTCCTCTaGTTCCTGAGAGGATACGCATCGGGTGTTCAGGTC	+
Preference number: 6 (lower is better) Translates to: HEAHAQRGSKFL*FLRGYASGVQV Trigger: GACCTGAACACCCGATGCGTATCCTCTCAGGAAGCAGAGGAACTTGCTGCCTCTCTGGGCATGGGCTTCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040411.7