Pregenerated sensors for RAB40B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025170Ensembl transcript IDs: ENSMUST00000106107.3
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGAGCTTCATGCACATCCACACAAAAGTGTCAGTCACAGCGCACTaGGCATTCCTACCACGGCAGTGGCATTCCAAAGGAAGCAGCATC | + |
|
Preference number: 1 (lower is better) Translates to: KSFMHIHTKVSVTAH*AFLPRQWHSKGSSI Trigger: GATGCTGCTTCCTTTGGAATGCCACTGCCGTGGTAGGAATGCCCAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCATGAAGCTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| 3UTR GCA 90 bp | CGGCAGTGGCATTCCAAAGGAAGCAGCATCGTTACCGTTAATAAATaGAGAACATGTTCCTCGAGTCTGGAAAGGTCTCTGTCTTCAGAC | + |
|
Preference number: 1 (lower is better) Translates to: RQWHSKGSSIVTVNK*RTCSSSLERSLSSD Trigger: GTCTGAAGACAGAGACCTTTCCAGACTCGAGGAACATGTTCTGCATTTATTAACGGTAACGATGCTGCTTCCTTTGGAATGCCACTGCCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| 3UTR-3UTR TCA 90 bp | TGCACATCCACACAAAAGTGTCAGTCACAGCGCACTGGGCATTCCTACCACGGCTGGGCCTTGAGCTTGTaGTCCTCCTGCCTCAGCCTC | + |
|
Preference number: 2 (lower is better) Translates to: CTSTQKCQSQRTGHSYHGWALSL*SSCLSL Trigger: GAGGCTGAGGCAGGAGGATCACAAGCTCAAGGCCCA...GCCGTGGTAGGAATGCCCAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| 3UTR-3UTR TCA 90 bp | TGCACATCCACACAAAAGTGTCAGTCACAGCGCACTGGGCATTCCTACCACGGCAGCCTCTTGAGTAGCTaGGATTACAGGCCACTGCCA | + |
|
Preference number: 2 (lower is better) Translates to: CTSTQKCQSQRTGHSYHGSLLSS*DYRPLP Trigger: TGGCAGTGGCCTGTAATCTCAGCTACTCAAGAGGCT...GCCGTGGTAGGAATGCCCAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| 3UTR-3UTR GCA 90 bp | TCTAGAACAAGAGCTTCATGCACATCCACACAAAAGTGTCAGTCACAGCGCACTGTTACCGTTAATAAATaGAGAACATGTTCCTCGAGT | + |
|
Preference number: 2 (lower is better) Translates to: SRTRASCTSTQKCQSQRTVTVNK*RTCSSS Trigger: ACTCGAGGAACATGTTCTGCATTTATTAACGGTAAC...AGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCATGAAGCTCTTGTTCTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| 3UTR CCA 72 bp | ATGCACATCCACACAAAAGTGTCAGTCACAGCGCACTaGGCATTCCTACCACGGCAGTGGCATTCCAAAGGA | + |
|
Preference number: 3 (lower is better) Translates to: MHIHTKVSVTAH*AFLPRQWHSKG Trigger: TCCTTTGGAATGCCACTGCCGTGGTAGGAATGCCCAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| 3UTR-3UTR CAA 90 bp | TCTAGAACAAGAGCTTCATGCACATCCACACAAAAGTGTCAGTCACAGCGCACTTTGCCCACGCTGGCCTaGAACTCACTCTGTAGCTTA | + |
|
Preference number: 3 (lower is better) Translates to: SRTRASCTSTQKCQSQRTLPTLA*NSLCSL Trigger: TAAGCTACAGAGTGAGTTCAAGGCCAGCGTGGGCAA...AGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCATGAAGCTCTTGTTCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| 3UTR CCA 72 bp | TTACCGTTAATAAATGCAGAACATGTTCCTCGAGTCTaGAAAGGTCTCTGTCTTCAGACTCTCCCAGAGAGC | + |
|
Preference number: 3 (lower is better) Translates to: LPLINAEHVPRV*KGLCLQTLPES Trigger: GCTCTCTGGGAGAGTCTGAAGACAGAGACCTTTCCAGACTCGAGGAACATGTTCTGCATTTATTAACGGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| 3UTR GCA 72 bp | CATTCCAAAGGAAGCAGCATCGTTACCGTTAATAAATaGAGAACATGTTCCTCGAGTCTGGAAAGGTCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: HSKGSSIVTVNK*RTCSSSLERSL Trigger: CAGAGACCTTTCCAGACTCGAGGAACATGTTCTGCATTTATTAACGGTAACGATGCTGCTTCCTTTGGAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR CCA 90 bp | TGCACATCCACACAAAAGTGTCAGTCACAGCGCACTGGGCATTCCTACCACGGCCTCCGTCCTGCAAGCTaGCCAGGATCTCTCCCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: CTSTQKCQSQRTGHSYHGLRPAS*PGSLPC Trigger: GCAAGGGAGAGATCCTGGCCAGCTTGCAGGACGGAG...GCCGTGGTAGGAATGCCCAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR GCA 90 bp | TGCACATCCACACAAAAGTGTCAGTCACAGCGCACTGGGCATTCCTACCACGGCAGACGGTCCATCCCATaGCGCAGCAGCACGATCCTA | + |
|
Preference number: 4 (lower is better) Translates to: CTSTQKCQSQRTGHSYHGRRSIP*RSSTIL Trigger: TAGGATCGTGCTGCTGCGGCATGGGATGGACCGTCT...GCCGTGGTAGGAATGCCCAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR GCA 90 bp | TCTAGAACAAGAGCTTCATGCACATCCACACAAAAGTGTCAGTCACAGCGCACTCCAGGTGCCCAGGCGTaGAGGACACCACAGCACGGC | + |
|
Preference number: 4 (lower is better) Translates to: SRTRASCTSTQKCQSQRTPGAQA*RTPQHG Trigger: GCCGTGCTGTGGTGTCCTGCACGCCTGGGCACCTGG...AGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCATGAAGCTCTTGTTCTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR CCA 90 bp | TCTAGAACAAGAGCTTCATGCACATCCACACAAAAGTGTCAGTCACAGCGCACTTTCCTGGGCGGGCTCTaGGGTGGGCGGATGGTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: SRTRASCTSTQKCQSQRTFLGGL*GGRMVL Trigger: CAGGACCATCCGCCCACCCCAGAGCCCGCCCAGGAA...AGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCATGAAGCTCTTGTTCTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR CCA 90 bp | TGCACATCCACACAAAAGTGTCAGTCACAGCGCACTGGGCATTCCTACCACGGCAAGCTGTTCCTCTTGTaGCTGGAGTTGGCAGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: CTSTQKCQSQRTGHSYHGKLFLL*LELAVR Trigger: CCTCACTGCCAACTCCAGCCACAAGAGGAACAGCTT...GCCGTGGTAGGAATGCCCAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR CCA 90 bp | TCTTCAGACTCTCCCAGAGAGCCAGCTCACTTTTTAATTTTGAGGTGGAGTCTCGGGCGGGCTCTGGGGTaGGCGGATGGTCCTGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: SSDSPREPAHFLILRWSLGRALG*ADGPDF Trigger: AAAGTCAGGACCATCCGCCCACCCCAGAGCCCGCCC...GAGACTCCACCTCAAAATTAAAAAGTGAGCTGGCTCTCTGGGAGAGTCTGAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR TCA 90 bp | TCTTCAGACTCTCCCAGAGAGCCAGCTCACTTTTTAATTTTGAGGTGGAGTCTCGGCTGGAGTTGGCAGTaGGGGAGTAGGAGCGGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: SSDSPREPAHFLILRWSLGWSWQ*GSRSGH Trigger: ATGGCCGCTCCTACTCCCTCACTGCCAACTCCAGCC...GAGACTCCACCTCAAAATTAAAAAGTGAGCTGGCTCTCTGGGAGAGTCTGAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR GCA 90 bp | CTAGAACAAGAGCTTCATGCACATCCACACAAAAGTGTCAGTCACAGCGCACTGTCGGCTGCTCCGTCCTaGAAGCTGGCCAGGATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LEQELHAHPHKSVSHSALSAAPS*KLARIS Trigger: AGAGATCCTGGCCAGCTTGCAGGACGGAGCAGCCGA...CAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCATGAAGCTCTTGTTCTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR CCA 90 bp | TGCACATCCACACAAAAGTGTCAGTCACAGCGCACTGGGCATTCCTACCACGGCCAAAGGACCATCGGTTaGCAATGTCATAGACCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: CTSTQKCQSQRTGHSYHGQRTIG*QCHRPG Trigger: TCCTGGTCTATGACATTGCCAACCGATGGTCCTTTG...GCCGTGGTAGGAATGCCCAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR GCA 90 bp | CTAGAACAAGAGCTTCATGCACATCCACACAAAAGTGTCAGTCACAGCGCACTGGAGGTGTCCCAAAGCTaGAGTTTCACCCTTCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: LEQELHAHPHKSVSHSALEVSQS*SFTLRP Trigger: TGGCCGAAGGGTGAAACTGCAGCTTTGGGACACCTC...CAGTGCGCTGTGACTGACACTTTTGTGTGGATGTGCATGAAGCTCTTGTTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR CCA 90 bp | AAGTCTAGAACAAGAGCTTCATGCACATCCACACAAAAGTGTCAGTCACAGCGCTTTTGCAGCTGTTCCTaGCACAGTTCCTGGGCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: KSRTRASCTSTQKCQSQRFCSCS*HSSWAG Trigger: GCCCGCCCAGGAACTGTGCCAGGAACAGCTGCAAAA...GCGCTGTGACTGACACTTTTGTGTGGATGTGCATGAAGCTCTTGTTCTAGACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR GCA 90 bp | AAGTCTAGAACAAGAGCTTCATGCACATCCACACAAAAGTGTCAGTCACAGCGCCACCTGTCGCTTGAATaGCAGGTGCAGCCGATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: KSRTRASCTSTQKCQSQRHLSLE*QVQPIS Trigger: GGAAATCGGCTGCACCTGGCATTCAAGCGACAGGTG...GCGCTGTGACTGACACTTTTGTGTGGATGTGCATGAAGCTCTTGTTCTAGACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR CCA 90 bp | CCAAAGGAAGCAGCATCGTTACCGTTAATAAATGCAGAACATGTTCCTCGAGTCGGCCATGCATCATCCTaGTGTTCAGGCCACTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: PKEAASLPLINAEHVPRVGHASS*CSGHWP Trigger: TGGCCAGTGGCCTGAACACCAGGATGATGCATGGCC...GACTCGAGGAACATGTTCTGCATTTATTAACGGTAACGATGCTGCTTCCTTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| 3UTR CAA 72 bp | TCAGACTCTCCCAGAGAGCCAGCTCACTTTTTAATTTaGAGGTGGAGTCTCAAAATTGCCCACGCTGGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SDSPREPAHFLI*RWSLKIAHAGL Trigger: AAGGCCAGCGTGGGCAATTTTGAGACTCCACCTCAAAATTAAAAAGTGAGCTGGCTCTCTGGGAGAGTCTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR GCA 90 bp | AGGTCTCTGTCTTCAGACTCTCCCAGAGAGCCAGCTCACTTTTTAATTTTGAGGGGAACCCCAGGGGCATaGTCATCAATCTCCTTAATC | + |
|
Preference number: 4 (lower is better) Translates to: RSLSSDSPREPAHFLILRGTPGA*SSISLI Trigger: GATTAAGGAGATTGATGAGCATGCCCCTGGGGTTCC...CCTCAAAATTAAAAAGTGAGCTGGCTCTCTGGGAGAGTCTGAAGACAGAGACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR CCA 90 bp | AAATGCAGAACATGTTCCTCGAGTCTGGAAAGGTCTCTGTCTTCAGACTCTCCCCATCTAGCAGGATGGTaGTCGTCTTGTGATCAATTC | + |
|
Preference number: 4 (lower is better) Translates to: KCRTCSSSLERSLSSDSPHLAGW*SSCDQF Trigger: GAATTGATCACAAGACGACCACCATCCTGCTAGATG...GGGAGAGTCTGAAGACAGAGACCTTTCCAGACTCGAGGAACATGTTCTGCATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||
| CDS-3UTR CAA 90 bp | TCTTCAGACTCTCCCAGAGAGCCAGCTCACTTTTTAATTTTGAGGTGGAGTCTCCGGAAGCTGTTCCTCTaGTGGCTGGAGTTGGCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: SSDSPREPAHFLILRWSLRKLFL*WLELAV Trigger: CACTGCCAACTCCAGCCACAAGAGGAACAGCTTCCG...GAGACTCCACCTCAAAATTAAAAAGTGAGCTGGCTCTCTGGGAGAGTCTGAAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106107.3 |
||