Pregenerated sensors for RAB3IP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064181Ensembl transcript IDs: ENSMUST00000020375.7, ENSMUST00000218391.2, ENSMUST00000219109.2, ENSMUST00000219603.2
Found 123 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CATACACACAGACAGGAAGGAGTCCTGTCCACCTGGCTCCTTCCTTaGCTCTCACAGGGGAACAAAGGGAAGACTACTATTGTCTTCTGC | + |
|
Preference number: 1 (lower is better) Translates to: HTHRQEGVLSTWLLP*LSQGNKGKTTIVFC Trigger: GCAGAAGACAATAGTAGTCTTCCCTTTGTTCCCCTGTGAGAGGCAAGGAAGGAGCCAGGTGGACAGGACTCCTTCCTGTCTGTGTGTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR TCA 90 bp | TCGATTTACTTTCAAAGCAAGAGAGATGAGCTGGAGAGACAGCACTaGCAACGGTCTGCAACTCCAATTCCAGGTCTGTGTGCAGCAGTC | + |
|
Preference number: 1 (lower is better) Translates to: SIYFQSKRDELERQH*QRSATPIPGLCAAV Trigger: GACTGCTGCACACAGACCTGGAATTGGAGTTGCAGACCGTTGTCAGTGCTGTCTCTCCAGCTCATCTCTCTTGCTTTGAAAGTAAATCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR TCA 90 bp | TACCGGCAGCAATGCTCCATCGATTTACTTTCAAAGCAAGAGAGATaGGCTGGAGAGACAGCACTGACAACGGTCTGCAACTCCAATTCC | + |
|
Preference number: 1 (lower is better) Translates to: YRQQCSIDLLSKQER*AGETALTTVCNSNS Trigger: GGAATTGGAGTTGCAGACCGTTGTCAGTGCTGTCTCTCCAGCTCATCTCTCTTGCTTTGAAAGTAAATCGATGGAGCATTGCTGCCGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR GCA 90 bp | AGCTCAGTCAGCTTAAAAGAAATCACAGCACTTCTCAGTGTAGTGTaGAAGAGGAGGGAAGTCTGTGGCCTCTCCTTAGAAATAAATATT | + |
|
Preference number: 1 (lower is better) Translates to: SSVSLKEITALLSVV*KRREVCGLSLEINI Trigger: AATATTTATTTCTAAGGAGAGGCCACAGACTTCCCTCCTCTTGCACACTACACTGAGAAGTGCTGTGATTTCTTTTAAGCTGACTGAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| 3UTR TCA 90 bp | CCCTCACACAAACACGTAACATGTAGAAAAATCATTTTTGAGATGTaGAGGTTTACCGGCAGCAATGCTCCATCGATTTACTTTCAAAGC | + |
|
Preference number: 1 (lower is better) Translates to: PSHKHVTCRKIIFEM*RFTGSNAPSIYFQS Trigger: GCTTTGAAAGTAAATCGATGGAGCATTGCTGCCGGTAAACCTTCACATCTCAAAAATGATTTTTCTACATGTTACGTGTTTGTGTGAGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR GCA 90 bp | AAAGACACACGCACTCCGTCTGATATTTATTTGGTGGTTTTGATTTaGAGTGTTGAATTACCATCACTAGCGCCTGCAATTCTTCATAGT | + |
|
Preference number: 1 (lower is better) Translates to: KDTRTPSDIYLVVLI*SVELPSLAPAILHS Trigger: ACTATGAAGAATTGCAGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATCAGACGGAGTGCGTGTGTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR-3UTR CCA 90 bp | CGCCTGCAATTCTTCATAGTGTGCTCCACTAAGGGATACAGCTCAGTCAGCTTATCCGTCATCCTTCAGTaGTCCAGGGAGGGGCAGCAC | + |
|
Preference number: 2 (lower is better) Translates to: RLQFFIVCSTKGYSSVSLSVILQ*SREGQH Trigger: GTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGA...TAAGCTGACTGAGCTGTATCCCTTAGTGGAGCACACTATGAAGAATTGCAGGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| 3UTR-3UTR GCA 90 bp | AGAGAACAGATTCCCAAAAGCTGTCATGTGACTGCCACACACGCAGACACACCCACCTGGCTCCTTCCTTaGCTCTCACAGGGGAACAAA | + |
|
Preference number: 2 (lower is better) Translates to: REQIPKSCHVTATHADTPTWLLP*LSQGNK Trigger: TTTGTTCCCCTGTGAGAGGCAAGGAAGGAGCCAGGT...GGGTGTGTCTGCGTGTGTGGCAGTCACATGACAGCTTTTGGGAATCTGTTCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR CAA 90 bp | GGCTCCTTCCTTGCCTCTCACAGGGGAACAAAGGGAAGACTACTATaGTCTTCTGCAACTCTCTATGCCGAGTCAGAGCTAAGAAAGACA | + |
|
Preference number: 2 (lower is better) Translates to: GSFLASHRGTKGRLL*SSATLYAESELRKT Trigger: TGTCTTTCTTAGCTCTGACTCGGCATAGAGAGTTGCAGAAGACAATAGTAGTCTTCCCTTTGTTCCCCTGTGAGAGGCAAGGAAGGAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR-3UTR TCA 90 bp | TGGAGAGACAGCACTGACAACGGTCTGCAACTCCAATTCCAGGTCTGTGTGCAGCACACGCACTCCGTCTaGTATTTATTTGGTGGTTTT | + |
|
Preference number: 2 (lower is better) Translates to: WRDSTDNGLQLQFQVCVQHTHSV*YLFGGF Trigger: AAAACCACCAAATAAATATCAGACGGAGTGCGTGTG...CTGCACACAGACCTGGAATTGGAGTTGCAGACCGTTGTCAGTGCTGTCTCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR-3UTR CCA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTTCCGTCATCCTTCAGTaGTCCAGGGAGGGGCAGCAC | + |
|
Preference number: 2 (lower is better) Translates to: DIYLVVLICSVELPSLAPSVILQ*SREGQH Trigger: GTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGA...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| 3UTR-3UTR TCA 90 bp | GAAAAATCATTTTTGAGATGTGAAGGTTTACCGGCAGCAATGCTCCATCGATTTTGCTCAGTGCTAACATaGAGCCAGGATGCTCAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: EKSFLRCEGLPAAMLHRFCSVLT*SQDAQA Trigger: TGCTTGAGCATCCTGGCTTCATGTTAGCACTGAGCA...AAATCGATGGAGCATTGCTGCCGGTAAACCTTCACATCTCAAAAATGATTTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR-3UTR GCA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTCTTCTCAGTGTAGTGTaGAAGAGGAGGGAAGTCTGT | + |
|
Preference number: 2 (lower is better) Translates to: DIYLVVLICSVELPSLAPLLSVV*KRREVC Trigger: ACAGACTTCCCTCCTCTTGCACACTACACTGAGAAG...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| 3UTR TCA 72 bp | AACTCCAATTCCAGGTCTGTGTGCAGCAGTCCTGAGTaGGAGGCATCCACGAGCATGCGCACACACACGAGC | + |
|
Preference number: 3 (lower is better) Translates to: NSNSRSVCSSPE*EASTSMRTHTS Trigger: GCTCGTGTGTGTGCGCATGCTCGTGGATGCCTCTCACTCAGGACTGCTGCACACAGACCTGGAATTGGAGTT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR TCA 72 bp | CAATGCTCCATCGATTTACTTTCAAAGCAAGAGAGATaGGCTGGAGAGACAGCACTGACAACGGTCTGCAAC | + |
|
Preference number: 3 (lower is better) Translates to: QCSIDLLSKQER*AGETALTTVCN Trigger: GTTGCAGACCGTTGTCAGTGCTGTCTCTCCAGCTCATCTCTCTTGCTTTGAAAGTAAATCGATGGAGCATTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR GCA 72 bp | AAAGGGAAGACTACTATTGTCTTCTGCAACTCTCTATaGCGAGTCAGAGCTAAGAAAGACACACGCACTCCG | + |
|
Preference number: 3 (lower is better) Translates to: KGKTTIVFCNSL*RVRAKKDTRTP Trigger: CGGAGTGCGTGTGTCTTTCTTAGCTCTGACTCGGCATAGAGAGTTGCAGAAGACAATAGTAGTCTTCCCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR GCA 72 bp | TCCATGATGATGCTCAGTGCTAACATGAAGCCAGGATaGTCAAGCACGCGCACTGTTCTTCATTTATTGCAC | + |
|
Preference number: 3 (lower is better) Translates to: SMMMLSANMKPG*SSTRTVLHLLH Trigger: GTGCAATAAATGAAGAACAGTGCGCGTGCTTGAGCATCCTGGCTTCATGTTAGCACTGAGCATCATCATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR TCA 72 bp | GGATATTGCTACCAACCCCGAAGTCCTGAGTCTGTTTaGTCACGAAAACCCATACAGAAGGAGAGAACAGAT | + |
|
Preference number: 3 (lower is better) Translates to: GYCYQPRSPESV*SRKPIQKERTD Trigger: ATCTGTTCTCTCCTTCTGTATGGGTTTTCGTGATCAAACAGACTCAGGACTTCGGGGTTGGTAGCAATATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR GCA 72 bp | TCACAGGGGAACAAAGGGAAGACTACTATTGTCTTCTaGAACTCTCTATGCCGAGTCAGAGCTAAGAAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: SQGNKGKTTIVF*NSLCRVRAKKD Trigger: GTCTTTCTTAGCTCTGACTCGGCATAGAGAGTTGCAGAAGACAATAGTAGTCTTCCCTTTGTTCCCCTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| 3UTR GCA 72 bp | CGCACTCCGTCTGATATTTATTTGGTGGTTTTGATTTaGAGTGTTGAATTACCATCACTAGCGCCTGCAATT | + |
|
Preference number: 3 (lower is better) Translates to: RTPSDIYLVVLI*SVELPSLAPAI Trigger: AATTGCAGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATCAGACGGAGTGCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR GCA 90 bp | TCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGGCCCCGCACACAGCCGAGCCTAATCCTGTaGCTGCAGGGCTTACTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SVILQWSREGQHARPRTQPSLIL*LQGLLW Trigger: CCAGAGTAAGCCCTGCAGGCACAGGATTAGGCTCGG...CTGTGTGCGGGGCCGTGCGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | GTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGGCCCCGCACACAGGGCGAGGTAGTCTGCTCTTaGGTTCCCGGGTCACACACA | + |
|
Preference number: 4 (lower is better) Translates to: VILQWSREGQHARPRTQGEVVCS*VPGSHT Trigger: TGTGTGTGACCCGGGAACCCAAGAGCAGACTACCTC...GCCCTGTGTGCGGGGCCGTGCGTGCTGCCCCTCCCTGGACCACTGAAGGATGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | GTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGGCCCCGCACACAGGGCTCTAAGGCATTGGCCTaGAGAGGGGCAGCGCATAAC | + |
|
Preference number: 4 (lower is better) Translates to: VILQWSREGQHARPRTQGSKALA*RGAAHN Trigger: GTTATGCGCTGCCCCTCTCCAGGCCAATGCCTTAGA...GCCCTGTGTGCGGGGCCGTGCGTGCTGCCCCTCCCTGGACCACTGAAGGATGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | GTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGGCCCCGCACACAGGGCGCGACAGGCTATCCGTaGTCAACCCAAAGATGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: VILQWSREGQHARPRTQGATGYP*STQRCH Trigger: ATGACATCTTTGGGTTGAGCACGGATAGCCTGTCGC...GCCCTGTGTGCGGGGCCGTGCGTGCTGCCCCTCCCTGGACCACTGAAGGATGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | GTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGGCCCCGCACACAGGGCCAGAAACTCCCTCTCTaGATTACAGCTGTCCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: VILQWSREGQHARPRTQGQKLPL*ITAVLP Trigger: AGGAAGGACAGCTGTAATGCAGAGAGGGAGTTTCTG...GCCCTGTGTGCGGGGCCGTGCGTGCTGCCCCTCCCTGGACCACTGAAGGATGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | TCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGGCCCCGCACACAGACATCAATTTTCCCCTaGGCTTCCTTCAGCTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SVILQWSREGQHARPRTQTSIFP*ASFSCF Trigger: GAAGCAGCTGAAGGAAGCCCAGGGGAAAATTGATGT...CTGTGTGCGGGGCCGTGCGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | TCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGGCCCCGCACACAGGCGATGTTGGAGAACTaGACAGTACGAGTGTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: SVILQWSREGQHARPRTQAMLEN*TVRVSS Trigger: TGAAGACACTCGTACTGTCCAGTTCTCCAACATCGC...CTGTGTGCGGGGCCGTGCGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | ACACGAGCGCGCGCGCACACACACACACACACACACACACCTAATAAAGGAGGCATCACACTCAAGTCCTaGTGGCTCCCACCCATGGCG | + |
|
Preference number: 4 (lower is better) Translates to: TRARAHTHTHTHTPNKGGITLKS*WLPPMA Trigger: CGCCATGGGTGGGAGCCACCAGGACTTGAGTGTGAT...GCCTCCTTTATTAGGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCTCGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR GCA 90 bp | GTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCGCCGCCAGAGGCTCCTaGGTAGGCGATGTTGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: VTIKMFRHPSVVQGGAARAARGS*VGDVGE Trigger: TTCTCCAACATCGCCTACGCAGGAGCCTCTGGCGGC...GCGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | GTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGAAGCGGATGGGCTaGAACCCCACTGGTTCGATG | + |
|
Preference number: 4 (lower is better) Translates to: VTIKMFRHPSVVQGGAARTKRMG*NPTGSM Trigger: CATCGAACCAGTGGGGTTGCAGCCCATCCGCTTCGT...GCGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | GCAACTCCAATTCCAGGTCTGTGTGCAGCAGTCCTGAGTGAGAGGCATCCACGAGAGGTAGTCTGCTCTTaGGTTCCCGGGTCACACACA | + |
|
Preference number: 4 (lower is better) Translates to: ATPIPGLCAAVLSERHPREVVCS*VPGSHT Trigger: TGTGTGTGACCCGGGAACCCAAGAGCAGACTACCTC...TCGTGGATGCCTCTCACTCAGGACTGCTGCACACAGACCTGGAATTGGAGTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CCA 90 bp | GTCAGCATACACACAGACAGGAAGGAGTCCTGTCCACCTGGCTCCTTCCTTGCCCTGCGTAGGCGATGTTaGAGAACTGGACAGTACGAG | + |
|
Preference number: 4 (lower is better) Translates to: VSIHTDRKESCPPGSFLALRRRC*RTGQYE Trigger: CTCGTACTGTCCAGTTCTCCAACATCGCCTACGCAG...GGCAAGGAAGGAGCCAGGTGGACAGGACTCCTTCCTGTCTGTGTGTATGCTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CCA 90 bp | TGGAGAGACAGCACTGACAACGGTCTGCAACTCCAATTCCAGGTCTGTGTGCAGAAAGATCTAAGGCATTaGCCTGGAGAGGGGCAGCGC | + |
|
Preference number: 4 (lower is better) Translates to: WRDSTDNGLQLQFQVCVQKDLRH*PGEGQR Trigger: GCGCTGCCCCTCTCCAGGCCAATGCCTTAGATCTTT...CTGCACACAGACCTGGAATTGGAGTTGCAGACCGTTGTCAGTGCTGTCTCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CCA 90 bp | AGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGATCACACTCAAGTCCTaGTGGCTCCCACCCATGGCG | + |
|
Preference number: 4 (lower is better) Translates to: SNHKNVPSSFSGPGRGSTITLKS*WLPPMA Trigger: CGCCATGGGTGGGAGCCACCAGGACTTGAGTGTGAT...CGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | AGAGAACAGATTCCCAAAAGCTGTCATGTGACTGCCACACACGCAGACACACCCTGGGCTTCCTTCAGCTaGTTCTCTGCAGTGGCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: REQIPKSCHVTATHADTPWASFS*FSAVAC Trigger: GCAAGCCACTGCAGAGAAGCAGCTGAAGGAAGCCCA...GGGTGTGTCTGCGTGTGTGGCAGTCACATGACAGCTTTTGGGAATCTGTTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR TCA 90 bp | AGAGAACAGATTCCCAAAAGCTGTCATGTGACTGCCACACACGCAGACACACCCAGCCTCCAGAACAGCTaGAGCCAACTCACTCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: REQIPKSCHVTATHADTPSLQNS*SQLTLC Trigger: GCAAAGAGTGAGTTGGCTTCAGCTGTTCTGGAGGCT...GGGTGTGTCTGCGTGTGTGGCAGTCACATGACAGCTTTTGGGAATCTGTTCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CCA 90 bp | GCAACTCCAATTCCAGGTCTGTGTGCAGCAGTCCTGAGTGAGAGGCATCCACGAGCGATGTTGGAGAACTaGACAGTACGAGTGTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: ATPIPGLCAAVLSERHPRAMLEN*TVRVSS Trigger: TGAAGACACTCGTACTGTCCAGTTCTCCAACATCGC...TCGTGGATGCCTCTCACTCAGGACTGCTGCACACAGACCTGGAATTGGAGTTGC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CCA 90 bp | TGGAGAGACAGCACTGACAACGGTCTGCAACTCCAATTCCAGGTCTGTGTGCAGACGTTCTGTCCATCGTaGGCTCATCCTTCCAAGATC | + |
|
Preference number: 4 (lower is better) Translates to: WRDSTDNGLQLQFQVCVQTFCPS*AHPSKI Trigger: GATCTTGGAAGGATGAGCCCACGATGGACAGAACGT...CTGCACACAGACCTGGAATTGGAGTTGCAGACCGTTGTCAGTGCTGTCTCTCCA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR TCA 90 bp | GGTCTGTGTGCAGCAGTCCTGAGTGAGAGGCATCCACGAGCATGCGCACACACAAGTTACATACAGAAGTaGTCCTGTATCTGCAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GLCAAVLSERHPRACAHTSYIQK*SCICRK Trigger: CTTTCTGCAGATACAGGATCACTTCTGTATGTAACT...TGTGTGTGCGCATGCTCGTGGATGCCTCTCACTCAGGACTGCTGCACACAGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CCA 90 bp | CGCCTGCAATTCTTCATAGTGTGCTCCACTAAGGGATACAGCTCAGTCAGCTTAAAAGATCTAAGGCATTaGCCTGGAGAGGGGCAGCGC | + |
|
Preference number: 4 (lower is better) Translates to: RLQFFIVCSTKGYSSVSLKDLRH*PGEGQR Trigger: GCGCTGCCCCTCTCCAGGCCAATGCCTTAGATCTTT...TAAGCTGACTGAGCTGTATCCCTTAGTGGAGCACACTATGAAGAATTGCAGGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR TCA 90 bp | GTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCTCCCTCACCATCTTGTaGGCTTCCTCAAACAAACTA | + |
|
Preference number: 4 (lower is better) Translates to: VTIKMFRHPSVVQGGAARSLTIL*ASSNKL Trigger: TAGTTTGTTTGAGGAAGCTCACAAGATGGTGAGGGA...GCGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | AGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCAGAAACTCCCTCTCTaGATTACAGCTGTCCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SNHKNVPSSFSGPGRGSTQKLPL*ITAVLP Trigger: AGGAAGGACAGCTGTAATGCAGAGAGGGAGTTTCTG...CGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | ATATTGAGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCGGTGGCTCCCACCCATaGCGCTGCTTGTACTTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: ILSNHKNVPSSFSGPGRGGGSHP*RCLYFC Trigger: ACAAAAGTACAAGCAGCGCCATGGGTGGGAGCCACC...GCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACTCAATAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR TCA 90 bp | TGGAGAGACAGCACTGACAACGGTCTGCAACTCCAATTCCAGGTCTGTGTGCAGTTCACGAGTCCCTGCTaGATGTATCGAATGTATGTA | + |
|
Preference number: 4 (lower is better) Translates to: WRDSTDNGLQLQFQVCVQFTSPC*MYRMYV Trigger: TACATACATTCGATACATTCAGCAGGGACTCGTGAA...CTGCACACAGACCTGGAATTGGAGTTGCAGACCGTTGTCAGTGCTGTCTCTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR GCA 90 bp | CGCCTGCAATTCTTCATAGTGTGCTCCACTAAGGGATACAGCTCAGTCAGCTTAGCGACAGGCTATCCGTaGTCAACCCAAAGATGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: RLQFFIVCSTKGYSSVSLATGYP*STQRCH Trigger: ATGACATCTTTGGGTTGAGCACGGATAGCCTGTCGC...TAAGCTGACTGAGCTGTATCCCTTAGTGGAGCACACTATGAAGAATTGCAGGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | TTAAAAGAAATCACAGCACTTCTCAGTGTAGTGTGCAAGAGGAGGGAAGTCTGTCCGAGCCTAATCCTGTaGCTGCAGGGCTTACTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LKEITALLSVVCKRREVCPSLIL*LQGLLW Trigger: CCAGAGTAAGCCCTGCAGGCACAGGATTAGGCTCGG...ACAGACTTCCCTCCTCTTGCACACTACACTGAGAAGTGCTGTGATTTCTTTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | TGTGAAGGTTTACCGGCAGCAATGCTCCATCGATTTACTTTCAAAGCAAGAGAGTCTAAGGCATTGGCCTaGAGAGGGGCAGCGCATAAC | + |
|
Preference number: 4 (lower is better) Translates to: CEGLPAAMLHRFTFKARESKALA*RGAAHN Trigger: GTTATGCGCTGCCCCTCTCCAGGCCAATGCCTTAGA...CTCTCTTGCTTTGAAAGTAAATCGATGGAGCATTGCTGCCGGTAAACCTTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CCA 90 bp | AGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGGCAGTCTTTTACGATTaGCTGGATCACACTCAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: SNHKNVPSSFSGPGRGSTAVFYD*LDHTQV Trigger: GACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGC...CGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | ATATTGAGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCCACACCAAGAAGGTCTaGAGAAGTAGGCGAAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: ILSNHKNVPSSFSGPGRGHTKKV*RSRRSK Trigger: CTTGCTTCGCCTACTTCTCCAGACCTTCTTGGTGTG...GCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACTCAATAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | CTTGCCTCTCACAGGGGAACAAAGGGAAGACTACTATTGTCTTCTGCAACTCTCACATCAATTTTCCCCTaGGCTTCCTTCAGCTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LASHRGTKGRLLLSSATLTSIFP*ASFSCF Trigger: GAAGCAGCTGAAGGAAGCCCAGGGGAAAATTGATGT...GAGAGTTGCAGAAGACAATAGTAGTCTTCCCTTTGTTCCCCTGTGAGAGGCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CCA 90 bp | TTAAAAGAAATCACAGCACTTCTCAGTGTAGTGTGCAAGAGGAGGGAAGTCTGTGGTGGCTCCCACCCATaGCGCTGCTTGTACTTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LKEITALLSVVCKRREVCGGSHP*RCLYFC Trigger: ACAAAAGTACAAGCAGCGCCATGGGTGGGAGCCACC...ACAGACTTCCCTCCTCTTGCACACTACACTGAGAAGTGCTGTGATTTCTTTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | ATATTGAGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCACGTTCTGTCCATCGTaGGCTCATCCTTCCAAGATC | + |
|
Preference number: 4 (lower is better) Translates to: ILSNHKNVPSSFSGPGRGTFCPS*AHPSKI Trigger: GATCTTGGAAGGATGAGCCCACGATGGACAGAACGT...GCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACTCAATAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | GTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCATAAATCAGCCTCTTTaGAGTCTTTTACGATTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: VTIKMFRHPSVVQGGAARINQPL*SLLRLA Trigger: AGCCAATCGTAAAAGACTGCAAAGAGGCTGATTTAT...GCGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | TTAAAAGAAATCACAGCACTTCTCAGTGTAGTGTGCAAGAGGAGGGAAGTCTGTCTGCGTAGGCGATGTTaGAGAACTGGACAGTACGAG | + |
|
Preference number: 4 (lower is better) Translates to: LKEITALLSVVCKRREVCLRRRC*RTGQYE Trigger: CTCGTACTGTCCAGTTCTCCAACATCGCCTACGCAG...ACAGACTTCCCTCCTCTTGCACACTACACTGAGAAGTGCTGTGATTTCTTTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | CTCACAGGGGAACAAAGGGAAGACTACTATTGTCTTCTGCAACTCTCTATGCCGGCAGTCTTTTACGATTaGCTGGATCACACTCAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LTGEQREDYYCLLQLSMPAVFYD*LDHTQV Trigger: GACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGC...CGGCATAGAGAGTTGCAGAAGACAATAGTAGTCTTCCCTTTGTTCCCCTGTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR GCA 90 bp | AGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGATCTCCTTTCTCAACTaGATAACTTCCCAAAACATC | + |
|
Preference number: 4 (lower is better) Translates to: SNHKNVPSSFSGPGRGSTISFLN*ITSQNI Trigger: GATGTTTTGGGAAGTTATGCAGTTGAGAAAGGAGAT...CGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR TCA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTAGCCTCCAGAACAGCTaGAGCCAACTCACTCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: DIYLVVLICSVELPSLAPSLQNS*SQLTLC Trigger: GCAAAGAGTGAGTTGGCTTCAGCTGTTCTGGAGGCT...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTGCAAGGTTCACTTCATaGAAGCCTTCCAAGGGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: DIYLVVLICSVELPSLAPARFTS*KPSKGS Trigger: CGACCCCTTGGAAGGCTTCCATGAAGTGAACCTTGC...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| 3UTR CAA 72 bp | GACACACGCACTCCGTCTGATATTTATTTGGTGGTTTaGATTTGCAGTGTTGAATTACCATCACTAGCGCCT | + |
|
Preference number: 4 (lower is better) Translates to: DTRTPSDIYLVV*ICSVELPSLAP Trigger: AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATCAGACGGAGTGCGTGTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR GCA 90 bp | ATATTGAGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCATAAATCAGCCTCTTTaGAGTCTTTTACGATTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: ILSNHKNVPSSFSGPGRGINQPL*SLLRLA Trigger: AGCCAATCGTAAAAGACTGCAAAGAGGCTGATTTAT...GCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACTCAATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | ATATTGAGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCATCTCCTTTCTCAACTaGATAACTTCCCAAAACATC | + |
|
Preference number: 4 (lower is better) Translates to: ILSNHKNVPSSFSGPGRGISFLN*ITSQNI Trigger: GATGTTTTGGGAAGTTATGCAGTTGAGAAAGGAGAT...GCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACTCAATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CCA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTCACACCAAGAAGGTCTaGAGAAGTAGGCGAAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: DIYLVVLICSVELPSLAPHTKKV*RSRRSK Trigger: CTTGCTTCGCCTACTTCTCCAGACCTTCTTGGTGTG...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTACCCCACTGGTTCGATaGTTAGAGTGTTGTTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: DIYLVVLICSVELPSLAPTPLVR*LECCSP Trigger: TGGAGAACAACACTCTAAGCATCGAACCAGTGGGGT...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR GCA 90 bp | GCAAACCATTATGATCAAGGGATTCACTACATTACAGCGGACAGAATAATAATAACCCCACTGGTTCGATaGTTAGAGTGTTGTTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: ANHYDQGIHYITADRIIITPLVR*LECCSP Trigger: TGGAGAACAACACTCTAAGCATCGAACCAGTGGGGT...TATTATTATTCTGTCCGCTGTAATGTAGTGAATCCCTTGATCATAATGGTTTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR TCA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTAACTTCAATTCCCTCTaGGCTTTTGCAAGTTCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: DIYLVVLICSVELPSLAPNFNSL*AFASSS Trigger: GGAAGAACTTGCAAAAGCTCAGAGGGAATTGAAGTT...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219109.2 |
||
| CDS-3UTR TCA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTAGTTACATACAGAAGTaGTCCTGTATCTGCAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: DIYLVVLICSVELPSLAPSYIQK*SCICRK Trigger: CTTTCTGCAGATACAGGATCACTTCTGTATGTAACT...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | GTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGGCCCCGCACACAGGGCGAAAGATCTAAGGCATaGGCCTGGAGAGGGGCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: VILQWSREGQHARPRTQGERSKA*AWRGAA Trigger: CGCTGCCCCTCTCCAGGCCAATGCCTTAGATCTTTC...GCCCTGTGTGCGGGGCCGTGCGTGCTGCCCCTCCCTGGACCACTGAAGGATGAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS GCA 90 bp | GGCCCTCCGCACTCGACAGCGGAAGCCTTCACGAAGCGGATGGGCTaGAACCCCACTGGTTCGATGCTTAGAGTGTTGTTCTCCACAGCC | + |
|
Preference number: 5 (lower is better) Translates to: GPPHSTAEAFTKRMG*NPTGSMLRVLFSTA Trigger: GGCTGTGGAGAACAACACTCTAAGCATCGAACCAGTGGGGTTGCAGCCCATCCGCTTCGTGAAGGCTTCCGCTGTCGAGTGCGGAGGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CCA 90 bp | AAAGGGGGTCTTTGCAGCCGCCAGAGGCTCCTGCGTAGGCGATGTTaGAGAACTGGACAGTACGAGTGTCTTCAGAGCGGCCACTTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: KGGLCSRQRLLRRRC*RTGQYECLQSGHFS Trigger: GCTGAAGTGGCCGCTCTGAAGACACTCGTACTGTCCAGTTCTCCAACATCGCCTACGCAGGAGCCTCTGGCGGCTGCAAAGACCCCCTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | TCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCACGGCCCCGCACACAGATTCCCTCTGAGCTTTaGCAAGTTCTTCCTTTAACC | + |
|
Preference number: 5 (lower is better) Translates to: SVILQWSREGQHARPRTQIPSEL*QVLPLT Trigger: GGTTAAAGGAAGAACTTGCAAAAGCTCAGAGGGAAT...CTGTGTGCGGGGCCGTGCGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219109.2 |
||
| CDS GCA 90 bp | CGGAAGCCTTCACGAAGCGGATGGGCTGCAACCCCACTGGTTCGATaGTTAGAGTGTTGTTCTCCACAGCCTCCAGAACAGCTGAAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: RKPSRSGWAATPLVR*LECCSPQPPEQLKP Trigger: TGGCTTCAGCTGTTCTGGAGGCTGTGGAGAACAACACTCTAAGCATCGAACCAGTGGGGTTGCAGCCCATCCGCTTCGTGAAGGCTTCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CCA 90 bp | TTTTTGGCCCTCCGCACTCGACAGCGGAAGCCTTCACGAAGCGGATaGGCTGCAACCCCACTGGTTCGATGCTTAGAGTGTTGTTCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: FLALRTRQRKPSRSG*AATPLVRCLECCSP Trigger: TGGAGAACAACACTCTAAGCATCGAACCAGTGGGGTTGCAGCCCATCCGCTTCGTGAAGGCTTCCGCTGTCGAGTGCGGAGGGCCAAAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS TCA 90 bp | ACTCCCTCTCTGCATTACAGCTGTCCTTCCTGGAGGTTAACTTCGTaGGCCCTGATGCTACCGCAGAGGGTACCGATGATGCTGGATCCG | + |
|
Preference number: 5 (lower is better) Translates to: TPSLHYSCPSWRLTS*ALMLPQRVPMMLDP Trigger: CGGATCCAGCATCATCGGTACCCTCTGCGGTAGCATCAGGGCTCACGAAGTTAACCTCCAGGAAGGACAGCTGTAATGCAGAGAGGGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS TCA 90 bp | CCGTGCTCAACCCAAAGATGTCATCATTGCCAGCAGAAGCCTCGGTaGTGGTGGCGCCCTGCAGAAACTCCCTCTCTGCATTACAGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: PCSTQRCHHCQQKPR*WWRPAETPSLHYSC Trigger: ACAGCTGTAATGCAGAGAGGGAGTTTCTGCAGGGCGCCACCATCACCGAGGCTTCTGCTGGCAATGATGACATCTTTGGGTTGAGCACGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS-3UTR CAA 90 bp | AGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGGGAGGTAGTCTGCTCTaGGGTTCCCGGGTCACACAC | + |
|
Preference number: 5 (lower is better) Translates to: SNHKNVPSSFSGPGRGSTGGSLL*GSRVTH Trigger: GTGTGTGACCCGGGAACCCAAGAGCAGACTACCTCC...CGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | ACACGAGCGCGCGCGCACACACACACACACACACACACACCTAATAAAGGAGGCGCGCTGCTTGTACTTTaGTTCCTTGTGTGCCCCCTT | + |
|
Preference number: 5 (lower is better) Translates to: TRARAHTHTHTHTPNKGGALLVL*FLVCPL Trigger: AAGGGGGCACACAAGGAACAAAAGTACAAGCAGCGC...GCCTCCTTTATTAGGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCTCGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS GCA 90 bp | AAGATGTCATCATTGCCAGCAGAAGCCTCGGTGATGGTGGCGCCCTaGAGAAACTCCCTCTCTGCATTACAGCTGTCCTTCCTGGAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: KMSSLPAEASVMVAP*RNSLSALQLSFLEV Trigger: AACCTCCAGGAAGGACAGCTGTAATGCAGAGAGGGAGTTTCTGCAGGGCGCCACCATCACCGAGGCTTCTGCTGGCAATGATGACATCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS CCA 90 bp | GGTAGTCTGCTCTTGGGTTCCCGGGTCACACACACCAAGAAGGTCTaGAGAAGTAGGCGAAGCAAGGTTCACTTCATGGAAGCCTTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: GSLLLGSRVTHTKKV*RSRRSKVHFMEAFQ Trigger: TTGGAAGGCTTCCATGAAGTGAACCTTGCTTCGCCTACTTCTCCAGACCTTCTTGGTGTGTGTGACCCGGGAACCCAAGAGCAGACTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000020375.7 ENSMUST00000218391.2 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS TCA 90 bp | GGAGAACTGGACAGTACGAGTGTCTTCAGAGCGGCCACTTCAGCCTaGAGTACATCAATTTTCCCCTGGGCTTCCTTCAGCTGCTTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GELDSTSVFRAATSA*STSIFPWASFSCFS Trigger: AGAGAAGCAGCTGAAGGAAGCCCAGGGGAAAATTGATGTACTTCAGGCTGAAGTGGCCGCTCTGAAGACACTCGTACTGTCCAGTTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CCA 90 bp | GCCTCTTTGCAGTCTTTTACGATTGGCTGGATCACACTCAAGTCCTaGTGGCTCCCACCCATGGCGCTGCTTGTACTTTTGTTCCTTGTG | + |
|
Preference number: 5 (lower is better) Translates to: ASLQSFTIGWITLKS*WLPPMALLVLLFLV Trigger: CACAAGGAACAAAAGTACAAGCAGCGCCATGGGTGGGAGCCACCAGGACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGCAAAGAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CCA 90 bp | TCTTTGCAGTCTTTTACGATTGGCTGGATCACACTCAAGTCCTGGTaGCTCCCACCCATGGCGCTGCTTGTACTTTTGTTCCTTGTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: SLQSFTIGWITLKSW*LPPMALLVLLFLVC Trigger: GCACACAAGGAACAAAAGTACAAGCAGCGCCATGGGTGGGAGCCACCAGGACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGCAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | TGTGAAGGTTTACCGGCAGCAATGCTCCATCGATTTACTTTCAAAGCAAGAGAGGGAGGTAGTCTGCTCTaGGGTTCCCGGGTCACACAC | + |
|
Preference number: 5 (lower is better) Translates to: CEGLPAAMLHRFTFKAREGGSLL*GSRVTH Trigger: GTGTGTGACCCGGGAACCCAAGAGCAGACTACCTCC...CTCTCTTGCTTTGAAAGTAAATCGATGGAGCATTGCTGCCGGTAAACCTTCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CAA 90 bp | CGCCTGCAATTCTTCATAGTGTGCTCCACTAAGGGATACAGCTCAGTCAGCTTACCAAAGATGTCATCATaGCCAGCAGAAGCCTCGGTG | + |
|
Preference number: 5 (lower is better) Translates to: RLQFFIVCSTKGYSSVSLPKMSS*PAEASV Trigger: CACCGAGGCTTCTGCTGGCAATGATGACATCTTTGG...TAAGCTGACTGAGCTGTATCCCTTAGTGGAGCACACTATGAAGAATTGCAGGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | GTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAGCACGCCTTCCCTCTGAGCTTTaGCAAGTTCTTCCTTTAACC | + |
|
Preference number: 5 (lower is better) Translates to: VTIKMFRHPSVVQGGAARLPSEL*QVLPLT Trigger: GGTTAAAGGAAGAACTTGCAAAAGCTCAGAGGGAAG...GCGTGCTGCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CAA 90 bp | CGCCTGCAATTCTTCATAGTGTGCTCCACTAAGGGATACAGCTCAGTCAGCTTAGCGCTGCTTGTACTTTaGTTCCTTGTGTGCCCCCTT | + |
|
Preference number: 5 (lower is better) Translates to: RLQFFIVCSTKGYSSVSLALLVL*FLVCPL Trigger: AAGGGGGCACACAAGGAACAAAAGTACAAGCAGCGC...TAAGCTGACTGAGCTGTATCCCTTAGTGGAGCACACTATGAAGAATTGCAGGCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | CGCCTGCAATTCTTCATAGTGTGCTCCACTAAGGGATACAGCTCAGTCAGCTTAGATACTTCTGCACAGTaGAAATGCCTGGGGGACGAA | + |
|
Preference number: 5 (lower is better) Translates to: RLQFFIVCSTKGYSSVSLDTSAQ*KCLGDE Trigger: TTCGTCCCCCAGGCATTTCAACTGTGCAGAAGTATC...TAAGCTGACTGAGCTGTATCCCTTAGTGGAGCACACTATGAAGAATTGCAGGCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | CTCACAGGGGAACAAAGGGAAGACTACTATTGTCTTCTGCAACTCTCTATGCCGTCGATGCTTAGAGTGTaGTTCTCCACAGCCTCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: LTGEQREDYYCLLQLSMPSMLRV*FSTASR Trigger: TCTGGAGGCTGTGGAGAACAACACTCTAAGCATCGA...CGGCATAGAGAGTTGCAGAAGACAATAGTAGTCTTCCCTTTGTTCCCCTGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CAA 90 bp | GAAAAATCATTTTTGAGATGTGAAGGTTTACCGGCAGCAATGCTCCATCGATTTGAAAGATCTAAGGCATaGGCCTGGAGAGGGGCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: EKSFLRCEGLPAAMLHRFERSKA*AWRGAA Trigger: CGCTGCCCCTCTCCAGGCCAATGCCTTAGATCTTTC...AAATCGATGGAGCATTGCTGCCGGTAAACCTTCACATCTCAAAAATGATTTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CAA 90 bp | CTCACAGGGGAACAAAGGGAAGACTACTATTGTCTTCTGCAACTCTCTATGCCGTGCAGTCTTTTACGATaGGCTGGATCACACTCAAGT | + |
|
Preference number: 5 (lower is better) Translates to: LTGEQREDYYCLLQLSMPCSLLR*AGSHSS Trigger: ACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGCA...CGGCATAGAGAGTTGCAGAAGACAATAGTAGTCTTCCCTTTGTTCCCCTGTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CAA 90 bp | TTAAAAGAAATCACAGCACTTCTCAGTGTAGTGTGCAAGAGGAGGGAAGTCTGTCACCCATGGCGCTGCTaGTACTTTTGTTCCTTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: LKEITALLSVVCKRREVCHPWRC*YFCSLC Trigger: ACACAAGGAACAAAAGTACAAGCAGCGCCATGGGTG...ACAGACTTCCCTCCTCTTGCACACTACACTGAGAAGTGCTGTGATTTCTTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | ATATTGAGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCTGCAGTCTTTTACGATaGGCTGGATCACACTCAAGT | + |
|
Preference number: 5 (lower is better) Translates to: ILSNHKNVPSSFSGPGRGCSLLR*AGSHSS Trigger: ACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGCA...GCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACTCAATAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | TTAAAAGAAATCACAGCACTTCTCAGTGTAGTGTGCAAGAGGAGGGAAGTCTGTTCGATGCTTAGAGTGTaGTTCTCCACAGCCTCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: LKEITALLSVVCKRREVCSMLRV*FSTASR Trigger: TCTGGAGGCTGTGGAGAACAACACTCTAAGCATCGA...ACAGACTTCCCTCCTCTTGCACACTACACTGAGAAGTGCTGTGATTTCTTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS TCA 90 bp | TCCTCAAACAAACTAGCTGTGAGTTCTTCCAACTCCTGCCCAAGTTaGTCCCGCACTTTCGAAAGTCTCTCACATTCTTCATCTTTTAAC | + |
|
Preference number: 5 (lower is better) Translates to: SSNKLAVSSSNSCPS*SRTFESLSHSSSFN Trigger: GTTAAAAGATGAAGAATGTGAGAGACTTTCGAAAGTGCGGGATCAACTTGGGCAGGAGTTGGAAGAACTCACAGCTAGTTTGTTTGAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTCCAAAGATGTCATCATaGCCAGCAGAAGCCTCGGTG | + |
|
Preference number: 5 (lower is better) Translates to: DIYLVVLICSVELPSLAPPKMSS*PAEASV Trigger: CACCGAGGCTTCTGCTGGCAATGATGACATCTTTGG...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTCACCCATGGCGCTGCTaGTACTTTTGTTCCTTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: DIYLVVLICSVELPSLAPHPWRC*YFCSLC Trigger: ACACAAGGAACAAAAGTACAAGCAGCGCCATGGGTG...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | ATATTGAGTAACCATAAAAATGTTCCGTCATCCTTCAGTGGTCCAGGGAGGGGCAAGCCAACTCACTCTTaGCAAATGTTAAACATGGAA | + |
|
Preference number: 5 (lower is better) Translates to: ILSNHKNVPSSFSGPGRGKPTHS*QMLNME Trigger: TTCCATGTTTAACATTTGCAAAGAGTGAGTTGGCTT...GCCCCTCCCTGGACCACTGAAGGATGACGGAACATTTTTATGGTTACTCAATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | TATATACGTAGGAAATATCTGAAGTCCAAGGCTATTCTCCAGAAACGTGAGCGTGATAAATCAGCCTCTTaGCAGTCTTTTACGATTGGC | + |
|
Preference number: 5 (lower is better) Translates to: YIRRKYLKSKAILQKRERDKSAS*QSFTIG Trigger: GCCAATCGTAAAAGACTGCAAAGAGGCTGATTTATC...ACGCTCACGTTTCTGGAGAATAGCCTTGGACTTCAGATATTTCCTACGTATATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS-3UTR CAA 90 bp | GATATTTATTTGGTGGTTTTGATTTGCAGTGTTGAATTACCATCACTAGCGCCTGATAAATCAGCCTCTTaGCAGTCTTTTACGATTGGC | + |
|
Preference number: 5 (lower is better) Translates to: DIYLVVLICSVELPSLAPDKSAS*QSFTIG Trigger: GCCAATCGTAAAAGACTGCAAAGAGGCTGATTTATC...AGGCGCTAGTGATGGTAATTCAACACTGCAAATCAAAACCACCAAATAAATATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS-3UTR CAA 90 bp | ACAGCGGACAGAATAATAATAAATAAAACCTTTCGTATGGATGTCAGCATACACAAGCCAACTCACTCTTaGCAAATGTTAAACATGGAA | + |
|
Preference number: 5 (lower is better) Translates to: TADRIIINKTFRMDVSIHKPTHS*QMLNME Trigger: TTCCATGTTTAACATTTGCAAAGAGTGAGTTGGCTT...GTGTATGCTGACATCCATACGAAAGGTTTTATTTATTATTATTCTGTCCGCTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020375.7 |
||
| CDS CAA 90 bp | GGAGGGGTGTGGCCGGTAGATGACGCTCGGGGAGGTAGTCTGCTCTaGGGTTCCCGGGTCACACACACCAAGAAGGTCTGGAGAAGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: GGVWPVDDARGGSLL*GSRVTHTKKVWRSR Trigger: CCTACTTCTCCAGACCTTCTTGGTGTGTGTGACCCGGGAACCCAAGAGCAGACTACCTCCCCGAGCGTCATCTACCGGCCACACCCCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000020375.7 ENSMUST00000218391.2 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS CAA 72 bp | TGGCCGGTAGATGACGCTCGGGGAGGTAGTCTGCTCTaGGGTTCCCGGGTCACACACACCAAGAAGGTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: WPVDDARGGSLL*GSRVTHTKKVW Trigger: CCAGACCTTCTTGGTGTGTGTGACCCGGGAACCCAAGAGCAGACTACCTCCCCGAGCGTCATCTACCGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000020375.7 ENSMUST00000218391.2 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS CCA 72 bp | CTTTGCAGCCGCCAGAGGCTCCTGCGTAGGCGATGTTaGAGAACTGGACAGTACGAGTGTCTTCAGAGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: LCSRQRLLRRRC*RTGQYECLQSG Trigger: GCCGCTCTGAAGACACTCGTACTGTCCAGTTCTCCAACATCGCCTACGCAGGAGCCTCTGGCGGCTGCAAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CCA 72 bp | CTCCGCACTCGACAGCGGAAGCCTTCACGAAGCGGATaGGCTGCAACCCCACTGGTTCGATGCTTAGAGTGT | + |
|
Preference number: 6 (lower is better) Translates to: LRTRQRKPSRSG*AATPLVRCLEC Trigger: ACACTCTAAGCATCGAACCAGTGGGGTTGCAGCCCATCCGCTTCGTGAAGGCTTCCGCTGTCGAGTGCGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CCA 72 bp | GCTGGATCACACTCAAGTCCTGGTGGCTCCCACCCATaGCGCTGCTTGTACTTTTGTTCCTTGTGTGCCCCC | + |
|
Preference number: 6 (lower is better) Translates to: AGSHSSPGGSHP*RCLYFCSLCAP Trigger: GGGGGCACACAAGGAACAAAAGTACAAGCAGCGCCATGGGTGGGAGCCACCAGGACTTGAGTGTGATCCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CAA 90 bp | CGTAAACGCGACAGGCTATCCGTGCTCAACCCAAAGATGTCATCATaGCCAGCAGAAGCCTCGGTGATGGTGGCGCCCTGCAGAAACTCC | + |
|
Preference number: 6 (lower is better) Translates to: RKRDRLSVLNPKMSS*PAEASVMVAPCRNS Trigger: GGAGTTTCTGCAGGGCGCCACCATCACCGAGGCTTCTGCTGGCAATGATGACATCTTTGGGTTGAGCACGGATAGCCTGTCGCGTTTACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS GCA 72 bp | TCATTGCCAGCAGAAGCCTCGGTGATGGTGGCGCCCTaGAGAAACTCCCTCTCTGCATTACAGCTGTCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: SLPAEASVMVAP*RNSLSALQLSF Trigger: GAAGGACAGCTGTAATGCAGAGAGGGAGTTTCTGCAGGGCGCCACCATCACCGAGGCTTCTGCTGGCAATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS GCA 72 bp | CACTCGACAGCGGAAGCCTTCACGAAGCGGATGGGCTaGAACCCCACTGGTTCGATGCTTAGAGTGTTGTTC | + |
|
Preference number: 6 (lower is better) Translates to: HSTAEAFTKRMG*NPTGSMLRVLF Trigger: GAACAACACTCTAAGCATCGAACCAGTGGGGTTGCAGCCCATCCGCTTCGTGAAGGCTTCCGCTGTCGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CAA 90 bp | GACGAATACACAGGTTGTGTAGGAAGATCAGAAAGATCTAAGGCATaGGCCTGGAGAGGGGCAGCGCATAACGTGGAGGGGTGTGGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: DEYTGCVGRSERSKA*AWRGAAHNVEGCGR Trigger: CCGGCCACACCCCTCCACGTTATGCGCTGCCCCTCTCCAGGCCAATGCCTTAGATCTTTCTGATCTTCCTACACAACCTGTGTATTCGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS GCA 72 bp | CTTTTAAAGGGGGTCTTTGCAGCCGCCAGAGGCTCCTaGGTAGGCGATGTTGGAGAACTGGACAGTACGAGT | + |
|
Preference number: 6 (lower is better) Translates to: LLKGVFAAARGS*VGDVGELDSTS Trigger: ACTCGTACTGTCCAGTTCTCCAACATCGCCTACGCAGGAGCCTCTGGCGGCTGCAAAGACCCCCTTTAAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS GCA 72 bp | TCACGAAGCGGATGGGCTGCAACCCCACTGGTTCGATaGTTAGAGTGTTGTTCTCCACAGCCTCCAGAACAG | + |
|
Preference number: 6 (lower is better) Translates to: SRSGWAATPLVR*LECCSPQPPEQ Trigger: CTGTTCTGGAGGCTGTGGAGAACAACACTCTAAGCATCGAACCAGTGGGGTTGCAGCCCATCCGCTTCGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CCA 72 bp | TGTGTAGGAAGATCAGAAAGATCTAAGGCATTGGCCTaGAGAGGGGCAGCGCATAACGTGGAGGGGTGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: CVGRSERSKALA*RGAAHNVEGCG Trigger: GCCACACCCCTCCACGTTATGCGCTGCCCCTCTCCAGGCCAATGCCTTAGATCTTTCTGATCTTCCTACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000020375.7 ENSMUST00000218391.2 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS TCA 72 bp | CTGCATTACAGCTGTCCTTCCTGGAGGTTAACTTCGTaGGCCCTGATGCTACCGCAGAGGGTACCGATGATG | + |
|
Preference number: 6 (lower is better) Translates to: LHYSCPSWRLTS*ALMLPQRVPMM Trigger: CATCATCGGTACCCTCTGCGGTAGCATCAGGGCTCACGAAGTTAACCTCCAGGAAGGACAGCTGTAATGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS CAA 72 bp | ACAGGTTGTGTAGGAAGATCAGAAAGATCTAAGGCATaGGCCTGGAGAGGGGCAGCGCATAACGTGGAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: TGCVGRSERSKA*AWRGAAHNVEG Trigger: CCCCTCCACGTTATGCGCTGCCCCTCTCCAGGCCAATGCCTTAGATCTTTCTGATCTTCCTACACAACCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 ENSMUST00000219603.2 |
||
| CDS CAA 72 bp | ATGGGCTGCAACCCCACTGGTTCGATGCTTAGAGTGTaGTTCTCCACAGCCTCCAGAACAGCTGAAGCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: MGCNPTGSMLRV*FSTASRTAEAN Trigger: GTTGGCTTCAGCTGTTCTGGAGGCTGTGGAGAACAACACTCTAAGCATCGAACCAGTGGGGTTGCAGCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CAA 90 bp | ACGAAGCGGATGGGCTGCAACCCCACTGGTTCGATGCTTAGAGTGTaGTTCTCCACAGCCTCCAGAACAGCTGAAGCCAACTCACTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: TKRMGCNPTGSMLRV*FSTASRTAEANSLF Trigger: AAAGAGTGAGTTGGCTTCAGCTGTTCTGGAGGCTGTGGAGAACAACACTCTAAGCATCGAACCAGTGGGGTTGCAGCCCATCCGCTTCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS TCA 72 bp | GACAGTACGAGTGTCTTCAGAGCGGCCACTTCAGCCTaGAGTACATCAATTTTCCCCTGGGCTTCCTTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: DSTSVFRAATSA*STSIFPWASFS Trigger: GCTGAAGGAAGCCCAGGGGAAAATTGATGTACTTCAGGCTGAAGTGGCCGCTCTGAAGACACTCGTACTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CCA 72 bp | CAGTCTTTTACGATTGGCTGGATCACACTCAAGTCCTaGTGGCTCCCACCCATGGCGCTGCTTGTACTTTTG | + |
|
Preference number: 6 (lower is better) Translates to: QSFTIGWITLKS*WLPPMALLVLL Trigger: CAAAAGTACAAGCAGCGCCATGGGTGGGAGCCACCAGGACTTGAGTGTGATCCAGCCAATCGTAAAAGACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CAA 90 bp | ACTCATTATACAGCGATAAATCAGCCTCTTTGCAGTCTTTTACGATaGGCTGGATCACACTCAAGTCCTGGTGGCTCCCACCCATGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: THYTAINQPLCSLLR*AGSHSSPGGSHPWR Trigger: GCGCCATGGGTGGGAGCCACCAGGACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGCAAAGAGGCTGATTTATCGCTGTATAATGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CCA 72 bp | GATAAATCAGCCTCTTTGCAGTCTTTTACGATTGGCTaGATCACACTCAAGTCCTGGTGGCTCCCACCCATG | + |
|
Preference number: 6 (lower is better) Translates to: DKSASLQSFTIG*ITLKSWWLPPM Trigger: CATGGGTGGGAGCCACCAGGACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGCAAAGAGGCTGATTTATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CAA 72 bp | ACAGCGATAAATCAGCCTCTTTGCAGTCTTTTACGATaGGCTGGATCACACTCAAGTCCTGGTGGCTCCCAC | + |
|
Preference number: 6 (lower is better) Translates to: TAINQPLCSLLR*AGSHSSPGGSH Trigger: GTGGGAGCCACCAGGACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGCAAAGAGGCTGATTTATCGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CAA 72 bp | CAAACTAGCTGTGAGTTCTTCCAACTCCTGCCCAAGTaGATCCCGCACTTTCGAAAGTCTCTCACATTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: QTSCEFFQLLPK*IPHFRKSLTFF Trigger: GAAGAATGTGAGAGACTTTCGAAAGTGCGGGATCAACTTGGGCAGGAGTTGGAAGAACTCACAGCTAGTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219109.2 |
||
| CDS CAA 90 bp | TCCTTCCAAGATCTGAACTCATTATACAGCGATAAATCAGCCTCTTaGCAGTCTTTTACGATTGGCTGGATCACACTCAAGTCCTGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SFQDLNSLYSDKSAS*QSFTIGWITLKSWW Trigger: CCACCAGGACTTGAGTGTGATCCAGCCAATCGTAAAAGACTGCAAAGAGGCTGATTTATCGCTGTATAATGAGTTCAGATCTTGGAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||
| CDS CAA 72 bp | GATCTGAACTCATTATACAGCGATAAATCAGCCTCTTaGCAGTCTTTTACGATTGGCTGGATCACACTCAAG | + |
|
Preference number: 6 (lower is better) Translates to: DLNSLYSDKSAS*QSFTIGWITLK Trigger: CTTGAGTGTGATCCAGCCAATCGTAAAAGACTGCAAAGAGGCTGATTTATCGCTGTATAATGAGTTCAGATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020375.7 ENSMUST00000219109.2 |
||