RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAB3GAP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039318

Ensembl transcript IDs: ENSMUST00000069652.8, ENSMUST00000194740.6

Found 339 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGTGCTTGCAGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTaGCTTCCAGAGTGCTGCAGAAGGTCCTGGGGCAAGTGGACCTAC +
Preference number: 1 (lower is better)
Translates to: SACSRRLSWQAAHIL*LPECCRRSWGKWTY
Trigger: GTAGGTCCACTTGCCCCAGGACCTTCTGCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCTGCAAGCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CCA 90 bp TCAAGCCATTTCTCCTCTGACAGCAGTAGCACCCTGGACAGGAAGTaGTTAGCACCCAGAGCTCCCTGCCAGGTGGCATCCCGGTACACG +
Preference number: 1 (lower is better)
Translates to: SSHFSSDSSSTLDRK*LAPRAPCQVASRYT
Trigger: CGTGTACCGGGATGCCACCTGGCAGGGAGCTCTGGGTGCTAACCACTTCCTGTCCAGGGTGCTACTGCTGTCAGAGGAGAAATGGCTTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR TCA 90 bp ACCCAGAGCTCCCTGCCAGGTGGCATCCCGGTACACGACCAACCATaGGGACATCTCTGTGTGTTTGAAAGGGACATGGGCTGTATCTCT +
Preference number: 1 (lower is better)
Translates to: TQSSLPGGIPVHDQP*GHLCVFERDMGCIS
Trigger: AGAGATACAGCCCATGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGCCACCTGGCAGGGAGCTCTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR GCA 90 bp TCAGGACTGTGTCAAGGATGGTATGTATGTCAGTCAAGCTGTGATTaGAGGGATTCCCGCACAAGCTGGCTGCTCCTCAGAGCCACCCGA +
Preference number: 1 (lower is better)
Translates to: SGLCQGWYVCQSSCD*RDSRTSWLLLRATR
Trigger: TCGGGTGGCTCTGAGGAGCAGCCAGCTTGTGCGGGAATCCCTGCAATCACAGCTTGACTGACATACATACCATCCTTGACACAGTCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR GCA 90 bp AGTTGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTGCTaGTGCTGTGTGTGCACTGTAAGATATTGTTTCCTAATGAAGTGG +
Preference number: 1 (lower is better)
Translates to: SCPALHPVRWKGVLC*CCVCTVRYCFLMKW
Trigger: CCACTTCATTAGGAAACAATATCTTACAGTGCACACACAGCAGCAGCAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CCA 90 bp CCAACATCATTAGCAATTAGCAGTGCTTGCAGCAGGAGGCTTTCCTaGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCAGAAGG +
Preference number: 1 (lower is better)
Translates to: PTSLAISSACSRRLS*QAAHILCLPECCRR
Trigger: CCTTCTGCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCTGCAAGCACTGCTAATTGCTAATGATGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR TCA 90 bp CTACTCAGGACTGTGTCAAGGATGGTATGTATGTCAGTCAAGCTGTaGTTGCAGGGATTCCCGCACAAGCTGGCTGCTCCTCAGAGCCAC +
Preference number: 1 (lower is better)
Translates to: LLRTVSRMVCMSVKL*LQGFPHKLAAPQSH
Trigger: GTGGCTCTGAGGAGCAGCCAGCTTGTGCGGGAATCCCTGCAATCACAGCTTGACTGACATACATACCATCCTTGACACAGTCCTGAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CCA 90 bp AAACTCCCAGCATATGATGGTGAAGAAGCTGTGGATGACGAAGCGTaGGATTCTGCAGGGAGTGGCAGTTGTGTGCCTCTACAAGGTGAG +
Preference number: 1 (lower is better)
Translates to: KLPAYDGEEAVDDEA*DSAGSGSCVPLQGE
Trigger: CTCACCTTGTAGAGGCACACAACTGCCACTCCCTGCAGAATCCCACGCTTCGTCATCCACAGCTTCTTCACCATCATATGCTGGGAGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CCA 90 bp TATGTATGTCAGTCAAGCTGTGATTGCAGGGATTCCCGCACAAGCTaGCTGCTCCTCAGAGCCACCCGAGCAACATCGGAAACATTTTTC +
Preference number: 1 (lower is better)
Translates to: YVCQSSCDCRDSRTS*LLLRATRATSETFF
Trigger: GAAAAATGTTTCCGATGTTGCTCGGGTGGCTCTGAGGAGCAGCCAGCTTGTGCGGGAATCCCTGCAATCACAGCTTGACTGACATACATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR TCA 90 bp CCAGTCACAATCTTATTTAGATCTAACTTTCTAATGACAAAGAATTaGTATTTGTGTGCGCCTGGGTGTCTGTCACTTTGTTGTGGAGTC +
Preference number: 1 (lower is better)
Translates to: PVTILFRSNFLMTKN*YLCAPGCLSLCCGV
Trigger: GACTCCACAACAAAGTGACAGACACCCAGGCGCACACAAATATCAATTCTTTGTCATTAGAAAGTTAGATCTAAATAAGATTGTGACTGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp CCCTGCCAGGTGGCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTCTCATGGAAGCAGTGTaGACACACTTAATCCCCACG +
Preference number: 2 (lower is better)
Translates to: PCQVASRYTTNHEDISVCLMEAV*THLIPT
Trigger: CGTGGGGATTAAGTGTGTTCACACTGCTTCCATGAG...ACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGCCACCTGGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTAGCAGCCAGGGCTTGCTaGTCTGCAGAGCGCAGTGCA +
Preference number: 2 (lower is better)
Translates to: LGVCHFVVESLKSILSLLAARAC*SAERSA
Trigger: TGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGC...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR GCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATTGCCTTCCAGAGTGCTaGAGAAGGTCCTGGGGCAAG +
Preference number: 2 (lower is better)
Translates to: ADYISPGPSICTSNITWNCLPEC*RRSWGK
Trigger: CTTGCCCCAGGACCTTCTGCAGCACTCTGGAAGGCA...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATTCTTCTCCACCTAGCTaGGGTAGGTATGCTAAGGCT +
Preference number: 2 (lower is better)
Translates to: ADYISPGPSICTSNITWNSSPPS*GRYAKA
Trigger: AGCCTTAGCATACCTACCTCAGCTAGGTGGAGAAGA...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR GCA 90 bp TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACGCTGTATCTCTAGTGTaGTCATGGAAGCAGTGTGAA +
Preference number: 2 (lower is better)
Translates to: SCSRTGNMTKSQKQTVLNAVSLV*SWKQCE
Trigger: TTCACACTGCTTCCATGAGCACACTAGAGATACAGC...GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR CCA 90 bp TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACTCTCTAGTGTGCTCATaGAAGCAGTGTGAACACACT +
Preference number: 2 (lower is better)
Translates to: SCSRTGNMTKSQKQTVLNSLVCS*KQCEHT
Trigger: AGTGTGTTCACACTGCTTCCATGAGCACACTAGAGA...GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTAACATCTCTGTGTGTTTaGAAGGGACATGGGCTGTAT +
Preference number: 2 (lower is better)
Translates to: LGVCHFVVESLKSILSLLTSLCV*KGHGLY
Trigger: ATACAGCCCATGTCCCTTTCAAACACACAGAGATGT...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR CCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTATGTTTGAAAGGGACATaGGCTGTATCTCTAGTGTGC +
Preference number: 2 (lower is better)
Translates to: LGVCHFVVESLKSILSLLCLKGT*AVSLVC
Trigger: GCACACTAGAGATACAGCCCATGTCCCTTTCAAACA...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp TTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGAACAGTGGAGGAAATATGTCAGTCAAGCTGTaGTTGCAGGGATTCCCGCAC +
Preference number: 2 (lower is better)
Translates to: LFKRRNLCVPTGMNSGGNMSVKL*LQGFPH
Trigger: GTGCGGGAATCCCTGCAATCACAGCTTGACTGACAT...ATTTCCTCCACTGTTCATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGGGTATGCTAAGGCTGTaGCAGCACAAAGTGCCCCAT +
Preference number: 2 (lower is better)
Translates to: MISENKGILGNSQHMMVKGMLRL*QHKVPH
Trigger: ATGGGGCACTTTGTGCTGTCACAGCCTTAGCATACC...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR CCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATCCCCACGGAATCATTTaGATAGGAACTAGACTACTA +
Preference number: 2 (lower is better)
Translates to: ADYISPGPSICTSNITWNPHGII*IGTRLL
Trigger: TAGTAGTCTAGTTCCTATCCAAATGATTCCGTGGGG...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CAA 90 bp CTAAAGCAGCAGGACTCTGAGTGTACTACAAAGAGCATCACCAAATaGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGAAC +
Preference number: 2 (lower is better)
Translates to: LKQQDSECTTKSITK*LFKRRNLCVPTGMN
Trigger: GTTCATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTCTTTGTAGTACACTCAGAGTCCTGCTGCTTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGCTTTGTTCACACCTCTaGTTCCTAAGTCTGGCAAGG +
Preference number: 2 (lower is better)
Translates to: MISENKGILGNSQHMMVKLCSHL*FLSLAR
Trigger: CCTTGCCAGACTTAGGAATCAGAGGTGTGAACAAAG...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp GAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATTTGCAAAAGTGTGAATaGAGCATTGGGAAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: EHHQIVIQEEKSLCSYGYLQKCE*SIGKPG
Trigger: ACCAGGCTTCCCAATGCTTCATTCACACTTTTGCAA...ATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGTTCCAGATCTTACTATaGAAAATGACATGCAGTGGT +
Preference number: 2 (lower is better)
Translates to: MISENKGILGNSQHMMVKFQILL*KMTCSG
Trigger: ACCACTGCATGTCATTTTTCATAGTAAGATCTGGAA...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATTCCAGATCTTACTATaGAAAATGACATGCAGTGGT +
Preference number: 2 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIFQILL*KMTCSG
Trigger: ACCACTGCATGTCATTTTTCATAGTAAGATCTGGAA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
3UTR GCA 72 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTaGCTTCCAGAGTGCTGCAGAAGGTCCTGGGGCAAG +
Preference number: 3 (lower is better)
Translates to: SRRLSWQAAHIL*LPECCRRSWGK
Trigger: CTTGCCCCAGGACCTTCTGCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR GCA 72 bp TGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTaGAGAAGGTCCTGGGGCAAGTGGACCTACTCAGGA +
Preference number: 3 (lower is better)
Translates to: WQAAHILCLPEC*RRSWGKWTYSG
Trigger: TCCTGAGTAGGTCCACTTGCCCCAGGACCTTCTGCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR GCA 72 bp TCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTaGTGCAGAAGGTCCTGGGGCAAGTGGACCTACTCA +
Preference number: 3 (lower is better)
Translates to: SWQAAHILCLPE*CRRSWGKWTYS
Trigger: TGAGTAGGTCCACTTGCCCCAGGACCTTCTGCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR TCA 72 bp TCCCTGCCAGGTGGCATCCCGGTACACGACCAACCATaGGGACATCTCTGTGTGTTTGAAAGGGACATGGGC +
Preference number: 3 (lower is better)
Translates to: SLPGGIPVHDQP*GHLCVFERDMG
Trigger: GCCCATGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGCCACCTGGCAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR GCA 72 bp AACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTaGATTTCCTCACACTTGTCAGCACTTGGACTGCTC +
Preference number: 3 (lower is better)
Translates to: NCSQGLLICRAQ*ISSHLSALGLL
Trigger: GAGCAGTCCAAGTGCTGACAAGTGTGAGGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR GCA 72 bp CTCCACCCCGTGAGGTGGAAGGGCGTGCTCTGCTGCTaGTGTGTGTGCACTGTAAGATATTGTTTCCTAATG +
Preference number: 3 (lower is better)
Translates to: LHPVRWKGVLCC*CVCTVRYCFLM
Trigger: CATTAGGAAACAATATCTTACAGTGCACACACAGCAGCAGCAGAGCACGCCCTTCCACCTCACGGGGTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CCA 72 bp CAGAGCGCAGTGCATTTCCTCACACTTGTCAGCACTTaGACTGCTCTAGGCACTACAGGGTCCAACACTAGC +
Preference number: 3 (lower is better)
Translates to: QSAVHFLTLVST*TALGTTGSNTS
Trigger: GCTAGTGTTGGACCCTGTAGTGCCTAGAGCAGTCCAAGTGCTGACAAGTGTGAGGAAATGCACTGCGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR GCA 72 bp CAGATACACTTGAACTGCAGCCAGGGCTTGCTGATCTaGAGAGCGCAGTGCATTTCCTCACACTTGTCAGCA +
Preference number: 3 (lower is better)
Translates to: QIHLNCSQGLLI*RAQCISSHLSA
Trigger: TGCTGACAAGTGTGAGGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CCA 72 bp GCATATGATGGTGAAGAAGCTGTGGATGACGAAGCGTaGGATTCTGCAGGGAGTGGCAGTTGTGTGCCTCTA +
Preference number: 3 (lower is better)
Translates to: AYDGEEAVDDEA*DSAGSGSCVPL
Trigger: TAGAGGCACACAACTGCCACTCCCTGCAGAATCCCACGCTTCGTCATCCACAGCTTCTTCACCATCATATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR GCA 72 bp TTGCACTATATGGCTACATTCCAGATACACTTGAACTaGAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGC +
Preference number: 3 (lower is better)
Translates to: LHYMATFQIHLN*SQGLLICRAQC
Trigger: GCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATCTGGAATGTAGCCATATAGTGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR GCA 72 bp GGAAAAAGACCAACATCATTAGCAATTAGCAGTGCTTaGAGCAGGAGGCTTTCCTGGCAAGCTGCCCACATC +
Preference number: 3 (lower is better)
Translates to: GKRPTSLAISSA*SRRLSWQAAHI
Trigger: GATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCTGCAAGCACTGCTAATTGCTAATGATGTTGGTCTTTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CCA 72 bp TGGGGCAAGTGGACCTACTCAGGACTGTGTCAAGGATaGTATGTATGTCAGTCAAGCTGTGATTGCAGGGAT +
Preference number: 3 (lower is better)
Translates to: WGKWTYSGLCQG*YVCQSSCDCRD
Trigger: ATCCCTGCAATCACAGCTTGACTGACATACATACCATCCTTGACACAGTCCTGAGTAGGTCCACTTGCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR CAA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGAACTGCAGCCAGGGCTaGCTGATCTGCAGAGCGCAG +
Preference number: 3 (lower is better)
Translates to: MISENKGILGNSQHMMVKNCSQG*LICRAQ
Trigger: CTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTT...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR CAA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATACATTCCAGATACACTaGAACTGCAGCCAGGGCTTG +
Preference number: 3 (lower is better)
Translates to: ADYISPGPSICTSNITWNTFQIH*NCSQGL
Trigger: CAAGCCCTGGCTGCAGTTCAAGTGTATCTGGAATGT...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CCA 72 bp AACCATGAGGACATCTCTGTGTGTTTGAAAGGGACATaGGCTGTATCTCTAGTGTGCTCATGGAAGCAGTGT +
Preference number: 3 (lower is better)
Translates to: NHEDISVCLKGT*AVSLVCSWKQC
Trigger: ACACTGCTTCCATGAGCACACTAGAGATACAGCCCATGTCCCTTTCAAACACACAGAGATGTCCTCATGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR CAA 90 bp GCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTTTGAAAGGGACAGTTTATCTTCAGTCTTaGCTGAAGATGGGGAATTTA +
Preference number: 3 (lower is better)
Translates to: ASRYTTNHEDISVCLKGTVYLQS*LKMGNL
Trigger: TAAATTCCCCATCTTCAGCAAAGACTGAAGATAAAC...TGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR TCA 72 bp CCCGAGCAACATCGGAAACATTTTTCTCTGAAGATTTaGAACCTGACAGTCAGCGGAGTTAGTTTTAGCCAG +
Preference number: 3 (lower is better)
Translates to: PEQHRKHFSLKI*NLTVSGVSFSQ
Trigger: CTGGCTAAAACTAACTCCGCTGACTGTCAGGTTTCAAATCTTCAGAGAAAAATGTTTCCGATGTTGCTCGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR CAA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGGACATCTCTGTGTGTTaGAAAGGGACATGGGCTGTA +
Preference number: 3 (lower is better)
Translates to: MISENKGILGNSQHMMVKDISVC*KGTWAV
Trigger: TACAGCCCATGTCCCTTTCAAACACACAGAGATGTC...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR TCA 72 bp ATGAACTTTTCTAACAGGTCAATCTTTGCAAAAGTGTaGATGAAGCATTGGGAAGCCTGGTGCTGTGTACTG +
Preference number: 3 (lower is better)
Translates to: MNFSNRSIFAKV*MKHWEAWCCVL
Trigger: CAGTACACAGCACCAGGCTTCCCAATGCTTCATTCACACTTTTGCAAAGATTGACCTGTTAGAAAAGTTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR-3UTR CAA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGTTTTTCTCTGAAGATTaGAAACCTGACAGTCAGCGG +
Preference number: 3 (lower is better)
Translates to: MISENKGILGNSQHMMVKFFSED*KPDSQR
Trigger: CCGCTGACTGTCAGGTTTCAAATCTTCAGAGAAAAA...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR TCA 72 bp TATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATaGACAGTGGAGGAAATAACACGAAGCGTTAATTTA +
Preference number: 3 (lower is better)
Translates to: YSRGEISVFLRV*TVEEITRSVNL
Trigger: TAAATTAACGCTTCGTGTTATTTCCTCCACTGTTCATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR TCA 72 bp CTATTTCAATGTAGCAGGCTTTACACTGGCCTTAGATaGACTTTTCTAACAGGTCAATCTTTGCAAAAGTGT +
Preference number: 3 (lower is better)
Translates to: LFQCSRLYTGLR*TFLTGQSLQKC
Trigger: ACACTTTTGCAAAGATTGACCTGTTAGAAAAGTTCATCTAAGGCCAGTGTAAAGCCTGCTACATTGAAATAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCAAGTCGCGCGCGGACTaGAGGTCCTGGAAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: SRRLSWQAAHILCLPECCKSRAD*RSWKEQ
Trigger: CTGCTCCTTCCAGGACCTGCAGTCCGCGCGCGACTT...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCGTGTGGGCGGGAGTCTaGCCAGCAGCTCCATGCCTT +
Preference number: 4 (lower is better)
Translates to: SRRLSWQAAHILCLPECCVWAGV*PAAPCL
Trigger: AAGGCATGGAGCTGCTGGCCAGACTCCCGCCCACAC...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CCCTGCCAGGTGGCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTAACCACTGGCGGCACTaGAGAGGGCGGAGGTCAGCT +
Preference number: 4 (lower is better)
Translates to: PCQVASRYTTNHEDISVCNHWRH*RGRRSA
Trigger: AGCTGACCTCCGCCCTCTTCAGTGCCGCCAGTGGTT...ACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGCCACCTGGCAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCAGAGACAGTAACTGCTaGGGGCTGAGTCCAGCCGAC +
Preference number: 4 (lower is better)
Translates to: SRRLSWQAAHILCLPECCRDSNC*GLSPAD
Trigger: GTCGGCTGGACTCAGCCCTCAGCAGTTACTGTCTCT...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCCAGGGGGACACAGACTaGGAATCCCACGTCTCATCG +
Preference number: 4 (lower is better)
Translates to: SRRLSWQAAHILCLPECCQGDTD*ESHVSS
Trigger: CGATGAGACGTGGGATTCTCAGTCTGTGTCCCCCTG...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCTTTAACAGAAAGCCTTaGCAGTGGCTCCGACTGCAG +
Preference number: 4 (lower is better)
Translates to: SRRLSWQAAHILCLPECCFNRKP*QWLRLQ
Trigger: CTGCAGTCGGAGCCACTGCCAAGGCTTTCTGTTAAA...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACGTCTCCTCCCGCAGGTaGGGGAATAGGAAGTCGCGC +
Preference number: 4 (lower is better)
Translates to: SCSRTGNMTKSQKQTVLNVSSRR*GNRKSR
Trigger: GCGCGACTTCCTATTCCCTCACCTGCGGGAGGAGAC...GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp GCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTCATAGAAGAAGCCAGTaGACGGACTGGAGCCCACAG +
Preference number: 4 (lower is better)
Translates to: APSCSRTGNMTKSQKQTVHRRSQ*TDWSPQ
Trigger: CTGTGGGCTCCAGTCCGTTCACTGGCTTCTTCTATG...AACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGATGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp GCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGTCCTTGGAATGCTaGGCCTGGACAGCTGCACTG +
Preference number: 4 (lower is better)
Translates to: APSCSRTGNMTKSQKQTVLSLEC*AWTAAL
Trigger: CAGTGCAGCTGTCCAGGCTCAGCATTCCAAGGACAA...AACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGATGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCCTCTGTCTCTTCCCATaGTCCCCAACTATCATCTTC +
Preference number: 4 (lower is better)
Translates to: SRRLSWQAAHILCLPECCLCLFP*SPTIIF
Trigger: GAAGATGATAGTTGGGGAGCATGGGAAGAGACAGAG...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp GACAGGAAGTGGTTAGCACCCAGAGCTCCCTGCCAGGTGGCATCCCGGTACACGACAGTGTCTTCCTCATaGTTGCTTTTCCAACCAAGC +
Preference number: 4 (lower is better)
Translates to: DRKWLAPRAPCQVASRYTTVSSS*LLFQPS
Trigger: GCTTGGTTGGAAAAGCAAGCATGAGGAAGACACTGT...CGTGTACCGGGATGCCACCTGGCAGGGAGCTCTGGGTGCTAACCACTTCCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp GACAGGAAGTGGTTAGCACCCAGAGCTCCCTGCCAGGTGGCATCCCGGTACACGAGCGCGATACCATTTTaGACGTGTGGATTAAGAATG +
Preference number: 4 (lower is better)
Translates to: DRKWLAPRAPCQVASRYTSAIPF*TCGLRM
Trigger: CATTCTTAATCCACACGTTCAAAATGGTATCGCGCT...CGTGTACCGGGATGCCACCTGGCAGGGAGCTCTGGGTGCTAACCACTTCCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp GCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTGTCAGCACTAGCAGCTaGGACGCCAGAACTTCTTTG +
Preference number: 4 (lower is better)
Translates to: APSCSRTGNMTKSQKQTVVSTSS*DARTSL
Trigger: CAAAGAAGTTCTGGCGTCTCAGCTGCTAGTGCTGAC...AACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGATGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCGCTGAATGTTCTCATTaGCTGATGCTGCAGCTTTTG +
Preference number: 4 (lower is better)
Translates to: SRRLSWQAAHILCLPECCAECSH*LMLQLL
Trigger: CAAAAGCTGCAGCATCAGGCAATGAGAACATTCAGC...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp GCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTCCCACTCTAGGTCCTTaGTGTGTGTTCCACACTTCC +
Preference number: 4 (lower is better)
Translates to: APSCSRTGNMTKSQKQTVPTLGP*CVFHTS
Trigger: GGAAGTGTGGAACACACAGCAAGGACCTAGAGTGGG...AACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGATGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp GCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTGGCCACTTTCATCTTaGTCAGCAGGGACAGCATGG +
Preference number: 4 (lower is better)
Translates to: APSCSRTGNMTKSQKQTVWPLSS*SAGTAW
Trigger: CCATGCTGTCCCTGCTGAGCAAGATGAAAGTGGCCA...AACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGATGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCAGTGTTTGCTGCTTCTaGAGAGGGATCTTTGTCCTT +
Preference number: 4 (lower is better)
Translates to: SRRLSWQAAHILCLPECCSVCCF*RGIFVL
Trigger: AAGGACAAAGATCCCTCTGCAGAAGCAGCAAACACT...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACTTGCCTTCAGCCAGGTaGAGAGTGTGGGCGGGAGTC +
Preference number: 4 (lower is better)
Translates to: SCSRTGNMTKSQKQTVLNLPSAR*RVWAGV
Trigger: GACTCCCGCCCACACTCTGCACCTGGCTGAAGGCAA...GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp GACAGGAAGTGGTTAGCACCCAGAGCTCCCTGCCAGGTGGCATCCCGGTACACGCTAAGTGCAGGTCCTTaGCTCTTTCACTCTTCTTAT +
Preference number: 4 (lower is better)
Translates to: DRKWLAPRAPCQVASRYTLSAGP*LFHSSY
Trigger: ATAAGAAGAGTGAAAGAGCCAAGGACCTGCACTTAG...CGTGTACCGGGATGCCACCTGGCAGGGAGCTCTGGGTGCTAACCACTTCCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATGTGTGGAAAAGCGCGTaGGCCAGCCTTTGCCCGGTC +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNVWKSA*ASLCPV
Trigger: GACCGGGCAAAGGCTGGCTCACGCGCTTTTCCACAC...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTATCACAGCTAGTGGGGTaGCCGGCTCCATCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLSQLVG*PAPSWA
Trigger: AGCCCAAGATGGAGCCGGCCACCCCACTAGCTGTGA...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CAA 72 bp GCTACATTCCAGATACACTTGAACTGCAGCCAGGGCTaGCTGATCTGCAGAGCGCAGTGCATTTCCTCACAC +
Preference number: 4 (lower is better)
Translates to: ATFQIHLNCSQG*LICRAQCISSH
Trigger: GTGTGAGGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATCTGGAATGTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTAGCACATAGCCCGATGTaGAGCCCACCACAATGCAGG +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLAHSPM*SPPQCR
Trigger: CCTGCATTGTGGTGGGCTTCACATCGGGCTATGTGC...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CCCTGCCAGGTGGCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTGAAGCAGTCTTCATTTaGTCAAATGGTGACAGAGTC +
Preference number: 4 (lower is better)
Translates to: PCQVASRYTTNHEDISVCEAVFI*SNGDRV
Trigger: GACTCTGTCACCATTTGATCAAATGAAGACTGCTTC...ACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGCCACCTGGCAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp GCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTGCCAAAATCATCTGTaGCTGCTGCCAGGGTATTAC +
Preference number: 4 (lower is better)
Translates to: APSCSRTGNMTKSQKQTVCQNHL*LLPGYY
Trigger: GTAATACCCTGGCAGCAGTCACAGATGATTTTGGCA...AACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGATGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATAGAATGCCCCACATGTaGAGACAGCAGGGCAGCGCC +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNRMPHM*RQQGSA
Trigger: GGCGCTGCCCTGCTGTCTGCACATGTGGGGCATTCT...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTATGGCCAGCAGCTCCATaGCTTCCTTCGTCTGGGTGT +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLWPAAP*LPSSGC
Trigger: ACACCCAGACGAAGGAAGGCATGGAGCTGCTGGCCA...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCAGCGCACGGTGGCTTTaGTGTTTTCTTGTTTATATT +
Preference number: 4 (lower is better)
Translates to: SRRLSWQAAHILCLPECCSARWL*CFLVYI
Trigger: AATATAAACAAGAAAACACCAAAGCCACCGTGCGCT...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATACCCGACTGGGCCCTTaGGTATTTCCAAAGGGGGAG +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNTRLGP*VFPKGE
Trigger: CTCCCCCTTTGGAAATACTCAAGGGCCCAGTCGGGT...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTACTGCCCGTGCTTCTCTaGCAGGAGCTCCATCACTTT +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLLPVLL*QELHHF
Trigger: AAAGTGATGGAGCTCCTGCCAGAGAAGCACGGGCAG...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp GAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGTAACTGCTGAGGGCTaGGTCCAGCCGACTCCAGGC +
Preference number: 4 (lower is better)
Translates to: EHHQIVIQEEKSLCSYGYVTAEG*VQPTPG
Trigger: GCCTGGAGTCGGCTGGACTCAGCCCTCAGCAGTTAC...ATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACCACGAGTTTAGCTGTTaGTGCAATAGGCACGCCAGT +
Preference number: 4 (lower is better)
Translates to: SCSRTGNMTKSQKQTVLNHEFSC*CNRHAS
Trigger: ACTGGCGTGCCTATTGCAGCAACAGCTAAACTCGTG...GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CTTTCTAATGACAAAGAATTGATATTTGTGTGCGCCTGGGTGTCTGTCACTTTGCCGGCCTGGGGGACTTaGCTCTCAGCAGGGCTGATA +
Preference number: 4 (lower is better)
Translates to: LSNDKELIFVCAWVSVTLPAWGT*LSAGLI
Trigger: TATCAGCCCTGCTGAGAGCCAAGTCCCCCAGGCCGG...CAAAGTGACAGACACCCAGGCGCACACAAATATCAATTCTTTGTCATTAGAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp GCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTGCAGCAGACAGACTGTaGTTTGTCCAAAATGTCTTT +
Preference number: 4 (lower is better)
Translates to: APSCSRTGNMTKSQKQTVAADRL*FVQNVF
Trigger: AAAGACATTTTGGACAAACCACAGTCTGTCTGCTGC...AACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGATGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATAGAAAGCCTTGGCAGTaGCTCCGACTGCAGAGATGG +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNRKPWQ*LRLQRW
Trigger: CCATCTCTGCAGTCGGAGCCACTGCCAAGGCTTTCT...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATAAGAGGTCAGCTCCATaGCTGTACAGCTCCCCCACA +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNKRSAP*LYSSPT
Trigger: TGTGGGGGAGCTGTACAGCCATGGAGCTGACCTCTT...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CAA 72 bp CGGTACACGACCAACCATGAGGACATCTCTGTGTGTTaGAAAGGGACATGGGCTGTATCTCTAGTGTGCTCA +
Preference number: 4 (lower is better)
Translates to: RYTTNHEDISVC*KGTWAVSLVCS
Trigger: TGAGCACACTAGAGATACAGCCCATGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTACCAAACCTGGCCAGTTaGGGTCTTTCCAATGAGTGT +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLPNLAS*GLSNEC
Trigger: ACACTCATTGGAAAGACCTCAACTGGCCAGGTTTGG...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp GCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTTTGAAAGGGACATGTCTTCCTCATGCTTaGTTTTCCAACCAAGCCAAC +
Preference number: 4 (lower is better)
Translates to: ASRYTTNHEDISVCLKGTCLPHA*FSNQAN
Trigger: GTTGGCTTGGTTGGAAAAGCAAGCATGAGGAAGACA...TGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CTTTCTAATGACAAAGAATTGATATTTGTGTGCGCCTGGGTGTCTGTCACTTTGAGGCTGTACTGCCCGTaGTTCTCTGGCAGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: LSNDKELIFVCAWVSVTLRLYCP*FSGRSS
Trigger: GGAGCTCCTGCCAGAGAAGCACGGGCAGTACAGCCT...CAAAGTGACAGACACCCAGGCGCACACAAATATCAATTCTTTGTCATTAGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp TTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGAACAGTGGAGGAAATGCGGACTGCAGGTCCTaGAAGGAGCAGAACTGGACG +
Preference number: 4 (lower is better)
Translates to: LFKRRNLCVPTGMNSGGNADCRS*KEQNWT
Trigger: CGTCCAGTTCTGCTCCTTCCAGGACCTGCAGTCCGC...ATTTCCTCCACTGTTCATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTATTGGGCTTCTGCTTCTaGACAGTGTCTTCCTCATGC +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLLGFCF*TVSSSC
Trigger: GCATGAGGAAGACACTGTCCAGAAGCAGAAGCCCAA...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGTCTCCTCCCGCAGGTaGGGGAATAGGAAGTCGCGC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVVSSRR*GNRKSR
Trigger: GCGCGACTTCCTATTCCCTCACCTGCGGGAGGAGAC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp GCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTTTGAAAGGGACACGTTGTTTAAGCCCATaGTTTTGTAGCCAGGATAGA +
Preference number: 4 (lower is better)
Translates to: ASRYTTNHEDISVCLKGTRCLSP*FCSQDR
Trigger: TCTATCCTGGCTACAAAATCATGGGCTTAAACAACG...TGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGTAACTGCTGAGGGCTaGGTCCAGCCGACTCCAGGC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVVTAEG*VQPTPG
Trigger: GCCTGGAGTCGGCTGGACTCAGCCCTCAGCAGTTAC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGTGTGGAAAAGCGCGTaGGCCAGCCTTTGCCCGGTC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVVWKSA*ASLCPV
Trigger: GACCGGGCAAAGGCTGGCTCACGCGCTTTTCCACAC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAAAGTCGCGCGCGGACTaGAGGTCCTGGAAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVKSRAD*RSWKEQ
Trigger: CTGCTCCTTCCAGGACCTGCAGTCCGCGCGCGACTT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGACTGGATGCAGGCCATaGGCATCTGCTGCCACCAGG +
Preference number: 4 (lower is better)
Translates to: MISENKGILGNSQHMMVKTGCRP*ASAATR
Trigger: CCTGGTGGCAGCAGATGCGCATGGCCTGCATCCAGT...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTAGAGTTTAGCTGTTGCTaGAATAGGCACGCCAGTGTT +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLEFSCC*NRHASV
Trigger: AACACTGGCGTGCCTATTGCAGCAACAGCTAAACTC...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp GCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTTTGAAAGGGACAAGCTCCATCACTTTATaGACGAGTTTAGCTGTTGCT +
Preference number: 4 (lower is better)
Translates to: ASRYTTNHEDISVCLKGTSSITL*TSLAVA
Trigger: AGCAACAGCTAAACTCGTGCATAAAGTGATGGAGCT...TGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTACAGAATCCCCCTTCGTaGTGCATAGATCACAAGGAA +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLQNPPS*CIDHKE
Trigger: TTCCTTGTGATCTATGCACCACGAAGGGGGATTCTG...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTAGTCCTGCATTTAAGCTaGAGCACTTTGTCCTCATTC +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLVLHLS*STLSSF
Trigger: GAATGAGGACAAAGTGCTTCAGCTTAAATGCAGGAC...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp TTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGAACAGTGGAGGAAATGACTGGAGCCCACAGTaGTGTACTGAGACATGGCAG +
Preference number: 4 (lower is better)
Translates to: LFKRRNLCVPTGMNSGGNDWSPQ*CTETWQ
Trigger: CTGCCATGTCTCAGTACATCACTGTGGGCTCCAGTC...ATTTCCTCCACTGTTCATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAACCACTGGCGGCACTaGAGAGGGCGGAGGTCAGCT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVINHWRH*RGRRSA
Trigger: AGCTGACCTCCGCCCTCTTCAGTGCCGCCAGTGGTT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp TTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGAACAGTGGAGGAAATGACTCGCCAGTGGGATaGACAGGGCACTGGTTACAT +
Preference number: 4 (lower is better)
Translates to: LFKRRNLCVPTGMNSGGNDSPVG*TGHWLH
Trigger: ATGTAACCAGTGCCCTGTGCATCCCACTGGCGAGTC...ATTTCCTCCACTGTTCATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp GCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTTTGAAAGGGACACTCATTCAAAAGTTGTaGAAGCAAAAGCACTCCACT +
Preference number: 4 (lower is better)
Translates to: ASRYTTNHEDISVCLKGTLIQKL*KQKHST
Trigger: AGTGGAGTGCTTTTGCTTGCACAACTTTTGAATGAG...TGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAAGAATGCCCCACATGTaGAGACAGCAGGGCAGCGCC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVRMPHM*RQQGSA
Trigger: GGCGCTGCCCTGCTGTCTGCACATGTGGGGCATTCT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATTGCCTTCAGCCAGGTaGAGAGTGTGGGCGGGAGTC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVLPSAR*RVWAGV
Trigger: GACTCCCGCCCACACTCTGCACCTGGCTGAAGGCAA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATCACAGCTAGTGGGGTaGCCGGCTCCATCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVSQLVG*PAPSWA
Trigger: AGCCCAAGATGGAGCCGGCCACCCCACTAGCTGTGA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACCGGCCTGGGGGACTTaGCTCTCAGCAGGGCTGATA +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIPAWGT*LSAGLI
Trigger: TATCAGCCCTGCTGAGAGCCAAGTCCCCCAGGCCGG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGTGTGGGCGGGAGTCTaGCCAGCAGCTCCATGCCTT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIVWAGV*PAAPCL
Trigger: AAGGCATGGAGCTGCTGGCCAGACTCCCGCCCACAC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGCACATAGCCCGATGTaGAGCCCACCACAATGCAGG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVAHSPM*SPPQCR
Trigger: CCTGCATTGTGGTGGGCTTCACATCGGGCTATGTGC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATAATGTTCTCATTGCCTaGTGCTGCAGCTTTTGCTAC +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNNVLIA*CCSFCY
Trigger: GTAGCAAAAGCTGCAGCATCAGGCAATGAGAACATT...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAACCCGACTGGGCCCTTaGGTATTTCCAAAGGGGGAG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVTRLGP*VFPKGE
Trigger: CTCCCCCTTTGGAAATACTCAAGGGCCCAGTCGGGT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp GAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATACTCCAGGAAGGTCTTaGCAGGTAGCACTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: EHHQIVIQEEKSLCSYGYTPGRS*QVALCL
Trigger: CAGACAGAGTGCTACCTGTCAAGACCTTCCTGGAGT...ATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAAGAGACAGTAACTGCTaGGGGCTGAGTCCAGCCGAC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVRDSNC*GLSPAD
Trigger: GTCGGCTGGACTCAGCCCTCAGCAGTTACTGTCTCT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CTTTCTAATGACAAAGAATTGATATTTGTGTGCGCCTGGGTGTCTGTCACTTTGAGGGACAGCATGGTATaGAGGCAGCAGACAGACTGT +
Preference number: 4 (lower is better)
Translates to: LSNDKELIFVCAWVSVTLRDSMV*RQQTDC
Trigger: ACAGTCTGTCTGCTGCCTTCATACCATGCTGTCCCT...CAAAGTGACAGACACCCAGGCGCACACAAATATCAATTCTTTGTCATTAGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGCAGAGTCTGGAGTATaGGGCAGTCCTCCAGCTGTC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVAESGV*GSPPAV
Trigger: GACAGCTGGAGGACTGCCTCATACTCCAGACTCTGC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATTTGAGGTCTTTCCAATaGGTGTTTGCTGCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNLRSFQ*VFAASA
Trigger: TGCAGAAGCAGCAAACACTCATTGGAAAGACCTCAA...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTACGGCTGGATATAAGATaGTCAGTTCTTCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLRLDIR*SVLHSA
Trigger: AGCAGAATGAAGAACTGAGCATCTTATATCCAGCCG...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATGGTCACTGGCCAAAATaGTTTCCAGAGCTTGTTTCT +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNGHWPK*FPELVS
Trigger: AGAAACAAGCTCTGGAAAGCATTTTGGCCAGTGACC...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAACTGGATGCAGGCCATaGGCATCTGCTGCCACCAGG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVITGCRP*ASAATR
Trigger: CCTGGTGGCAGCAGATGCGCATGGCCTGCATCCAGT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp GAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATTGTTCTCTGACTGGATaGAGGCCATGCGCATCTGCT +
Preference number: 4 (lower is better)
Translates to: EHHQIVIQEEKSLCSYGYCSLTG*RPCASA
Trigger: AGCAGATGCGCATGGCCTGCATCCAGTCAGAGAACA...ATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAGGCTGTACTGCCCGTaGTTCTCTGGCAGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIRLYCP*FSGRSS
Trigger: GGAGCTCCTGCCAGAGAAGCACGGGCAGTACAGCCT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGCGGACTGCAGGTCCTaGAAGGAGCAGAACTGGACG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIADCRS*KEQNWT
Trigger: CGTCCAGTTCTGCTCCTTCCAGGACCTGCAGTCCGC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATGGCCGGCTCCATCTTaGGCTTCTGCTTCTGGACAG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVWPAPS*ASASGQ
Trigger: CTGTCCAGAAGCAGAAGCCCAAGATGGAGCCGGCCA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp GAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATACTGAGCGACCCGACTaGGCCCTTGAGTATTTCCAA +
Preference number: 4 (lower is better)
Translates to: EHHQIVIQEEKSLCSYGYTERPD*ALEYFQ
Trigger: TTGGAAATACTCAAGGGCCCAGTCGGGTCGCTCAGT...ATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTAGCACAACCTATCCTTTaGAGATTTCCCAACCTTATC +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLAQPIL*RFPNLI
Trigger: GATAAGGTTGGGAAATCTCCAAAGGATAGGTTGTGC...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGACTGGAGCCCACAGTaGTGTACTGAGACATGGCAG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVDWSPQ*CTETWQ
Trigger: CTGCCATGTCTCAGTACATCACTGTGGGCTCCAGTC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACATAGAAGAAGCCAGTaGACGGACTGGAGCCCACAG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVHRRSQ*TDWSPQ
Trigger: CTGTGGGCTCCAGTCCGTTCACTGGCTTCTTCTATG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACAGGGGGACACAGACTaGGAATCCCACGTCTCATCG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIQGDTD*ESHVSS
Trigger: CGATGAGACGTGGGATTCTCAGTCTGTGTCCCCCTG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATTGTCCTTGGAATGCTaGGCCTGGACAGCTGCACTG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVLSLEC*AWTAAL
Trigger: CAGTGCAGCTGTCCAGGCTCAGCATTCCAAGGACAA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATAAAATCATCTGTGACTaGTGCCAGGGTATTACAAGG +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNKIICD*CQGITR
Trigger: CCTTGTAATACCCTGGCAGCAGTCACAGATGATTTT...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATGGCCAGCAGCTCCATaGCTTCCTTCGTCTGGGTGT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIWPAAP*LPSSGC
Trigger: ACACCCAGACGAAGGAAGGCATGGAGCTGCTGGCCA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATGGCCGGCTCCATCTTaGGCTTCTGCTTCTGGACAG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIWPAPS*ASASGQ
Trigger: CTGTCCAGAAGCAGAAGCCCAAGATGGAGCCGGCCA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATCACTCAGCGCTAGATaGAAAGGCACGTTCACCGCC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVSLSAR*KGTFTA
Trigger: GGCGGTGAACGTGCCTTTCCATCTAGCGCTGAGTGA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAAAGAGGTCAGCTCCATaGCTGTACAGCTCCCCCACA +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVKRSAP*LYSSPT
Trigger: TGTGGGGGAGCTGTACAGCCATGGAGCTGACCTCTT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CTTTCTAATGACAAAGAATTGATATTTGTGTGCGCCTGGGTGTCTGTCACTTTGGCTAATGGTGGTGGCTaGATGTTCTCATTGCCTGAT +
Preference number: 4 (lower is better)
Translates to: LSNDKELIFVCAWVSVTLANGGG*MFSLPD
Trigger: ATCAGGCAATGAGAACATTCAGCCACCACCATTAGC...CAAAGTGACAGACACCCAGGCGCACACAAATATCAATTCTTTGTCATTAGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTTTCTAATGACAAAGAATTGATATTTGTGTGCGCCTGGGTGTCTGTCACTTTGCCTGGACAGCTGCACTaGCAACTTTCAGTAAGAACT +
Preference number: 4 (lower is better)
Translates to: LSNDKELIFVCAWVSVTLPGQLH*QLSVRT
Trigger: AGTTCTTACTGAAAGTTGTCAGTGCAGCTGTCCAGG...CAAAGTGACAGACACCCAGGCGCACACAAATATCAATTCTTTGTCATTAGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACCCACTCTAGGTCCTTaGTGTGTGTTCCACACTTCC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVPTLGP*CVFHTS
Trigger: GGAAGTGTGGAACACACAGCAAGGACCTAGAGTGGG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATGGCCACTTTCATCTTaGTCAGCAGGGACAGCATGG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVWPLSS*SAGTAW
Trigger: CCATGCTGTCCCTGCTGAGCAAGATGAAAGTGGCCA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATCACTCAGCGCTAGATaGAAAGGCACGTTCACCGCC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVISLSAR*KGTFTA
Trigger: GGCGGTGAACGTGCCTTTCCATCTAGCGCTGAGTGA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp GAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGGCACATCTCTTCAGTaGAGCTTTCTCCATGCAAAC +
Preference number: 4 (lower is better)
Translates to: EHHQIVIQEEKSLCSYGYGTSLQ*SFLHAN
Trigger: GTTTGCATGGAGAAAGCTCCACTGAAGAGATGTGCC...ATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACTATGCAGCAGAGTCTaGAGTATGAGGCAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVLCSRV*SMRQSS
Trigger: GGAGGACTGCCTCATACTCCAGACTCTGCTGCATAG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAGAAAGCCTTGGCAGTaGCTCCGACTGCAGAGATGG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIRKPWQ*LRLQRW
Trigger: CCATCTCTGCAGTCGGAGCCACTGCCAAGGCTTTCT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATGGTGCTCCACCAGTaGGTAGTGGATAGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVMVLHQ*VVDRLL
Trigger: CAGAAGCCTATCCACTACCCACTGGTGGAGCACCAT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACTGCCCGTGCTTCTCTaGCAGGAGCTCCATCACTTT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVILPVLL*QELHHF
Trigger: AAAGTGATGGAGCTCCTGCCAGAGAAGCACGGGCAG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAACTCCAGGAAGGTCTTaGCAGGTAGCACTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVITPGRS*QVALCL
Trigger: CAGACAGAGTGCTACCTGTCAAGACCTTCCTGGAGT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAGGGACAGCATGGTATaGAGGCAGCAGACAGACTGT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIRDSMV*RQQTDC
Trigger: ACAGTCTGTCTGCTGCCTTCATACCATGCTGTCCCT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGTCTATCTCCACCTCTaGCACCTCAGGGAAACTTCG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIVYLHL*HLRETS
Trigger: CGAAGTTTCCCTGAGGTGTCAGAGGTGGAGATAGAC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACCAAACCTGGCCAGTTaGGGTCTTTCCAATGAGTGT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVPNLAS*GLSNEC
Trigger: ACACTCATTGGAAAGACCTCAACTGGCCAGGTTTGG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGTCAGCACTAGCAGCTaGGACGCCAGAACTTCTTTG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIVSTSS*DARTSL
Trigger: CAAAGAAGTTCTGGCGTCTCAGCTGCTAGTGCTGAC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATCCATCTTGGGCTTCTaGTTCTGGACAGTGTCTTCC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVSILGF*FWTVSS
Trigger: GGAAGACACTGTCCAGAAGCAGAAGCCCAAGATGGA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGAATCCCCCTTCGTGGTaGATAGATCACAAGGAACTG +
Preference number: 4 (lower is better)
Translates to: MISENKGILGNSQHMMVKNPPSW*IDHKEL
Trigger: CAGTTCCTTGTGATCTATGCACCACGAAGGGGGATT...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp GAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATTCCAGAAAAAGAAACTaGCTAGAGCCACACACTCCT +
Preference number: 4 (lower is better)
Translates to: EHHQIVIQEEKSLCSYGYSRKRN*LEPHTP
Trigger: AGGAGTGTGTGGCTCTAGGCAGTTTCTTTTTCTGGA...ATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATGTTCTCTGACTGGATaGAGGCCATGCGCATCTGCT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVICSLTG*RPCASA
Trigger: AGCAGATGCGCATGGCCTGCATCCAGTCAGAGAACA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTATGTGGATTAAGAATGTaGTTCAAGTGTTCTATGGAT +
Preference number: 4 (lower is better)
Translates to: LGVCHFVVESLKSILSLLCGLRM*FKCSMD
Trigger: ATCCATAGAACACTTGAAGCACATTCTTAATCCACA...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp TTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGAACAGTGGAGGAAATCCAATGAGTGTTTGCTaGTTCTGCAGAGGGATCTTT +
Preference number: 4 (lower is better)
Translates to: LFKRRNLCVPTGMNSGGNPMSVC*FCRGIF
Trigger: AAAGATCCCTCTGCAGAAGCAGCAAACACTCATTGG...ATTTCCTCCACTGTTCATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACACGAGTTTAGCTGTTaGTGCAATAGGCACGCCAGT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVHEFSC*CNRHAS
Trigger: ACTGGCGTGCCTATTGCAGCAACAGCTAAACTCGTG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGCATATGCTTTCTCCGTaGCGTCTAGAATCCGGAAGT +
Preference number: 4 (lower is better)
Translates to: MISENKGILGNSQHMMVKHMLSP*RLESGS
Trigger: ACTTCCGGATTCTAGACGCCACGGAGAAAGCATATG...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAACTGAGCGACCCGACTaGGCCCTTGAGTATTTCCAA +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVITERPD*ALEYFQ
Trigger: TTGGAAATACTCAAGGGCCCAGTCGGGTCGCTCAGT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp GAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATACGATAAACGGTCACTaGCCAAAATGCTTTCCAGAG +
Preference number: 4 (lower is better)
Translates to: EHHQIVIQEEKSLCSYGYTINGH*PKCFPE
Trigger: CTCTGGAAAGCATTTTGGCCAGTGACCGTTTATCGT...ATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACTATGCAGCAGAGTCTaGAGTATGAGGCAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVILCSRV*SMRQSS
Trigger: GGAGGACTGCCTCATACTCCAGACTCTGCTGCATAG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAATGGTGCTCCACCAGTaGGTAGTGGATAGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIMVLHQ*VVDRLL
Trigger: CAGAAGCCTATCCACTACCCACTGGTGGAGCACCAT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGTCCACAGCCAAACCTaGCCAGTTGAGGTCTTTCCA +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIVHSQT*PVEVFP
Trigger: TGGAAAGACCTCAACTGGCCAGGTTTGGCTGTGGAC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTTCTAATGACAAAGAATTGATATTTGTGTGCGCCTGGGTGTCTGTCACTTTGCCTGAACTTGAAAAATaGCCTCCTCTCCTAAGAGGT +
Preference number: 4 (lower is better)
Translates to: LSNDKELIFVCAWVSVTLPELEK*PPLLRG
Trigger: ACCTCTTAGGAGAGGAGGCCATTTTTCAAGTTCAGG...CAAAGTGACAGACACCCAGGCGCACACAAATATCAATTCTTTGTCATTAGAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
3UTR CAA 72 bp CAGGACTCTGAGTGTACTACAAAGAGCATCACCAAATaGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACG +
Preference number: 4 (lower is better)
Translates to: QDSECTTKSITK*LFKRRNLCVPT
Trigger: CGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTTGGTGATGCTCTTTGTAGTACACTCAGAGTCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGCAGGCTCGAAGAGACTaGAAGAGACTAAATCCATCA +
Preference number: 4 (lower is better)
Translates to: MISENKGILGNSQHMMVKQARRD*KRLNPS
Trigger: TGATGGATTTAGTCTCTTTCAGTCTCTTCGAGCCTG...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACCTGGACAGCTGCACTaGCAACTTTCAGTAAGAACT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVPGQLH*QLSVRT
Trigger: AGTTCTTACTGAAAGTTGTCAGTGCAGCTGTCCAGG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACTCTGTCTCTTCCCATaGTCCCCAACTATCATCTTC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVLCLFP*SPTIIF
Trigger: GAAGATGATAGTTGGGGAGCATGGGAAGAGACAGAG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATCGGACTGTTTTTAATTaGTGCATTAAATCCACCTAT +
Preference number: 4 (lower is better)
Translates to: ADYISPGPSICTSNITWNRTVFN*CIKSTY
Trigger: ATAGGTGGATTTAATGCAGCAATTAAAAACAGTCCG...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATCCATCTTGGGCTTCTaGTTCTGGACAGTGTCTTCC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVISILGF*FWTVSS
Trigger: GGAAGACACTGTCCAGAAGCAGAAGCCCAAGATGGA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTTCTAATGACAAAGAATTGATATTTGTGTGCGCCTGGGTGTCTGTCACTTTGAGTTTCTTCACTAAGTaGAGGTCCTTGGCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: LSNDKELIFVCAWVSVTLSFFTK*RSLALS
Trigger: TGAAAGAGCCAAGGACCTGCACTTAGTGAAGAAACT...CAAAGTGACAGACACCCAGGCGCACACAAATATCAATTCTTTGTCATTAGAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGAGTTTAGCTGTTGCTaGAATAGGCACGCCAGTGTT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVEFSCC*NRHASV
Trigger: AACACTGGCGTGCCTATTGCAGCAACAGCTAAACTC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATTTAACAGAAAGCCTTaGCAGTGGCTCCGACTGCAG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIFNRKP*QWLRLQ
Trigger: CTGCAGTCGGAGCCACTGCCAAGGCTTTCTGTTAAA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGCTAATGGTGGTGGCTaGATGTTCTCATTGCCTGAT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIANGGG*MFSLPD
Trigger: ATCAGGCAATGAGAACATTCAGCCACCACCATTAGC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATGCCAAAATCATCTGTaGCTGCTGCCAGGGTATTAC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVICQNHL*LLPGYY
Trigger: GTAATACCCTGGCAGCAGTCACAGATGATTTTGGCA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAAACGGGGTGTCTGAGTaGAAGTCAAGCGTATTTAAC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVNGVSE*KSSVFN
Trigger: GTTAAATACGCTTGACTTTCACTCAGACACCCCGTT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATTGAGGTCTTTCCAATaGGTGTTTGCTGCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVLRSFQ*VFAASA
Trigger: TGCAGAAGCAGCAAACACTCATTGGAAAGACCTCAA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGCTGAATGTTCTCATTaGCTGATGCTGCAGCTTTTG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVAECSH*LMLQLL
Trigger: CAAAAGCTGCAGCATCAGGCAATGAGAACATTCAGC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATGTCTTCCTCATGCTTaGTTTTCCAACCAAGCCAAC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVCLPHA*FSNQAN
Trigger: GTTGGCTTGGTTGGAAAAGCAAGCATGAGGAAGACA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAACAGTGTCTTCCTCATaGTTGCTTTTCCAACCAAGC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVTVSSS*LLFQPS
Trigger: GCTTGGTTGGAAAAGCAAGCATGAGGAAGACACTGT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAATCCCCCTTCGTGGTaGATAGATCACAAGGAACTG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVINPPSW*IDHKEL
Trigger: CAGTTCCTTGTGATCTATGCACCACGAAGGGGGATT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGGTCACTGGCCAAAATaGTTTCCAGAGCTTGTTTCT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVGHWPK*FPELVS
Trigger: AGAAACAAGCTCTGGAAAGCATTTTGGCCAGTGACC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACCAATGAGTGTTTGCTaGTTCTGCAGAGGGATCTTT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVPMSVC*FCRGIF
Trigger: AAAGATCCCTCTGCAGAAGCAGCAAACACTCATTGG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATTTCCAATGAGTGTTTaGTGCTTCTGCAGAGGGATC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVFPMSV*CFCRGI
Trigger: GATCCCTCTGCAGAAGCAGCAAACACTCATTGGAAA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACATCAATCGTCACAATaGCGGCTGGATATAAGATGC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVHQSSQ*RLDIRC
Trigger: GCATCTTATATCCAGCCGCCATTGTGACGATTGATG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGCAGCTTTTGCTACTTaGTTTCGACAGGCTCGAAGA +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIAAFAT*FRQARR
Trigger: TCTTCGAGCCTGTCGAAACCAAGTAGCAAAAGCTGC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACATATGCTTTCTCCGTaGCGTCTAGAATCCGGAAGT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIHMLSP*RLESGS
Trigger: ACTTCCGGATTCTAGACGCCACGGAGAAAGCATATG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACAGAATCCCCCTTCGTaGTGCATAGATCACAAGGAA +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIQNPPS*CIDHKE
Trigger: TTCCTTGTGATCTATGCACCACGAAGGGGGATTCTG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACAGAAAAGCGCACGGTaGCTTTGGTGTTTTCTTGTT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVQKSAR*LWCFLV
Trigger: AACAAGAAAACACCAAAGCCACCGTGCGCTTTTCTG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGGCACATCTCTTCAGTaGAGCTTTCTCCATGCAAAC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIGTSLQ*SFLHAN
Trigger: GTTTGCATGGAGAAAGCTCCACTGAAGAGATGTGCC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGGAGCAAGTCTTCTCTaGGTTCGTCTGGATTTTCTA +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVGASLL*VRLDFL
Trigger: TAGAAAATCCAGACGAACCCAGAGAAGACTTGCTCC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACAGGCTCGAAGAGACTaGAAGAGACTAAATCCATCA +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIQARRD*KRLNPS
Trigger: TGATGGATTTAGTCTCTTTCAGTCTCTTCGAGCCTG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAATGTTCTCATTGCCTaGTGCTGCAGCTTTTGCTAC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVINVLIA*CCSFCY
Trigger: GTAGCAAAAGCTGCAGCATCAGGCAATGAGAACATT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAAAAATCATCTGTGACTaGTGCCAGGGTATTACAAGG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVKIICD*CQGITR
Trigger: CCTTGTAATACCCTGGCAGCAGTCACAGATGATTTT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATCCAGAAAAAGAAACTaGCTAGAGCCACACACTCCT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVISRKRN*LEPHTP
Trigger: AGGAGTGTGTGGCTCTAGGCAGTTTCTTTTTCTGGA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAGTGTTTGCTGCTTCTaGAGAGGGATCTTTGTCCTT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVISVCCF*RGIFVL
Trigger: AAGGACAAAGATCCCTCTGCAGAAGCAGCAAACACT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATTTCCAATGAGTGTTTaGTGCTTCTGCAGAGGGATC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIFPMSV*CFCRGI
Trigger: GATCCCTCTGCAGAAGCAGCAAACACTCATTGGAAA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACTAAGTGCAGGTCCTTaGCTCTTTCACTCTTCTTAT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVLSAGP*LFHSSY
Trigger: ATAAGAAGAGTGAAAGAGCCAAGGACCTGCACTTAG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAACGATAAACGGTCACTaGCCAAAATGCTTTCCAGAG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVITINGH*PKCFPE
Trigger: CTCTGGAAAGCATTTTGGCCAGTGACCGTTTATCGT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGCAGCAGACAGACTGTaGTTTGTCCAAAATGTCTTT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVAADRL*FVQNVF
Trigger: AAAGACATTTTGGACAAACCACAGTCTGTCTGCTGC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATTCTCTGGGTTCGTCTaGATTTTCTACATCTCTCTC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVFSGFV*IFYISL
Trigger: GAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACCTGAACTTGAAAAATaGCCTCCTCTCCTAAGAGGT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIPELEK*PPLLRG
Trigger: ACCTCTTAGGAGAGGAGGCCATTTTTCAAGTTCAGG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGAAGCAGTCTTCATTTaGTCAAATGGTGACAGAGTC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIEAVFI*SNGDRV
Trigger: GACTCTGTCACCATTTGATCAAATGAAGACTGCTTC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACGTTGTTTAAGCCCATaGTTTTGTAGCCAGGATAGA +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIRCLSP*FCSQDR
Trigger: TCTATCCTGGCTACAAAATCATGGGCTTAAACAACG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR TCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAGCGCGATACCATTTTaGACGTGTGGATTAAGAATG +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVISAIPF*TCGLRM
Trigger: CATTCTTAATCCACACGTTCAAAATGGTATCGCGCT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACTCATTCAAAAGTTGTaGAAGCAAAAGCACTCCACT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVLIQKL*KQKHST
Trigger: AGTGGAGTGCTTTTGCTTGCACAACTTTTGAATGAG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACGGCTGGATATAAGATaGTCAGTTCTTCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIRLDIR*SVLHSA
Trigger: AGCAGAATGAAGAACTGAGCATCTTATATCCAGCCG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAGTTTCTTCACTAAGTaGAGGTCCTTGGCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVISFFTK*RSLALS
Trigger: TGAAAGAGCCAAGGACCTGCACTTAGTGAAGAAACT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAGCTCCATCACTTTATaGACGAGTTTAGCTGTTGCT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVISSITL*TSLAVA
Trigger: AGCAACAGCTAAACTCGTGCATAAAGTGATGGAGCT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp TTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGAACAGTGGAGGAAATGTAGTTTTAATTTACTaGCACAAAACTGTAGCAGTC +
Preference number: 4 (lower is better)
Translates to: LFKRRNLCVPTGMNSGGNVVLIY*HKTVAV
Trigger: GACTGCTACAGTTTTGTGCCAGTAAATTAAAACTAC...ATTTCCTCCACTGTTCATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAAGCGCACGGTGGCTTTaGTGTTTTCTTGTTTATATT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVSARWL*CFLVYI
Trigger: AATATAAACAAGAAAACACCAAAGCCACCGTGCGCT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGCACAACCTATCCTTTaGAGATTTCCCAACCTTATC +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIAQPIL*RFPNLI
Trigger: GATAAGGTTGGGAAATCTCCAAAGGATAGGTTGTGC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTACATCTCTCTCTTTGTTaGCACATTTCAACAATTCAG +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVHLSLC*HISTIQ
Trigger: CTGAATTGTTGAAATGTGCCAACAAAGAGAGAGATG...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATGTGGATTAAGAATGTaGTTCAAGTGTTCTATGGAT +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVCGLRM*FKCSMD
Trigger: ATCCATAGAACACTTGAAGCACATTCTTAATCCACA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CCA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGTAGTTTTAATTTACTaGCACAAAACTGTAGCAGTC +
Preference number: 4 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVVVLIY*HKTVAV
Trigger: GACTGCTACAGTTTTGTGCCAGTAAATTAAAACTAC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR GCA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACGGACTGTTTTTAATTaGTGCATTAAATCCACCTAT +
Preference number: 4 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIRTVFN*CIKSTY
Trigger: ATAGGTGGATTTAATGCAGCAATTAAAAACAGTCCG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 90 bp TTACTCGGGTCCCTCTTCAGGGCGCCGGGGGTCTCCTCCCGCAGGTaGGGGAATAGGAAGTCGCGCGCGGACTGCAGGTCCTGGAAGGAG +
Preference number: 5 (lower is better)
Translates to: LLGSLFRAPGVSSRR*GNRKSRADCRSWKE
Trigger: CTCCTTCCAGGACCTGCAGTCCGCGCGCGACTTCCTATTCCCTCACCTGCGGGAGGAGACCCCCGGCGCCCTGAAGAGGGACCCGAGTAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 90 bp TCAGCCAGGTGCAGAGTGTGGGCGGGAGTCTGGCCAGCAGCTCCATaGCTTCCTTCGTCTGGGTGTGGAAAAGCGCGTGAGCCAGCCTTT +
Preference number: 5 (lower is better)
Translates to: SARCRVWAGVWPAAP*LPSSGCGKAREPAF
Trigger: AAAGGCTGGCTCACGCGCTTTTCCACACCCAGACGAAGGAAGGCATGGAGCTGCTGGCCAGACTCCCGCCCACACTCTGCACCTGGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 90 bp AAGCCAACCACTGGCGGCACTGAAGAGGGCGGAGGTCAGCTTACTTaGAACAGCGAGCGCGACGTGAGACAACAGAGGCTGCGTGCTTCC +
Preference number: 5 (lower is better)
Translates to: KPTTGGTEEGGGQLT*NSERDVRQQRLRAS
Trigger: GGAAGCACGCAGCCTCTGTTGTCTCACGTCGCGCTCGCTGTTGCAAGTAAGCTGACCTCCGCCCTCTTCAGTGCCGCCAGTGGTTGGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 90 bp TCTGAAGATCCTGAGGGTTCATTGCCTTCAGCCAGGTGCAGAGTGTaGGCGGGAGTCTGGCCAGCAGCTCCATGCCTTCCTTCGTCTGGG +
Preference number: 5 (lower is better)
Translates to: SEDPEGSLPSARCRV*AGVWPAAPCLPSSG
Trigger: CCCAGACGAAGGAAGGCATGGAGCTGCTGGCCAGACTCCCGCCCACACTCTGCACCTGGCTGAAGGCAATGAACCCTCAGGATCTTCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp GACAGGAAGTGGTTAGCACCCAGAGCTCCCTGCCAGGTGGCATCCCGGTACACGGATCCTGAGGGTTCATaGCCTTCAGCCAGGTGCAGA +
Preference number: 5 (lower is better)
Translates to: DRKWLAPRAPCQVASRYTDPEGS*PSARCR
Trigger: TCTGCACCTGGCTGAAGGCAATGAACCCTCAGGATC...CGTGTACCGGGATGCCACCTGGCAGGGAGCTCTGGGTGCTAACCACTTCCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS TCA 90 bp GCAAAAGCACTCCACTCTCAGTGTAGAAGCGCACATAGCCCGATGTaGAGCCCACCACAATGCAGGTCCAGTCAGGGCGCCCAGTGGAAC +
Preference number: 5 (lower is better)
Translates to: AKALHSQCRSAHSPM*SPPQCRSSQGAQWN
Trigger: GTTCCACTGGGCGCCCTGACTGGACCTGCATTGTGGTGGGCTTCACATCGGGCTATGTGCGCTTCTACACTGAGAGTGGAGTGCTTTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 90 bp AATTTCTTATCTGTAGCACCGCTGGACATCTGTGCGGCCACAGAATaGCCCACATGTGCAGACAGCAGGGCAGCGCCGCTGTTCTCTGAC +
Preference number: 5 (lower is better)
Translates to: NFLSVAPLDICAATE*PTCADSRAAPLFSD
Trigger: GTCAGAGAACAGCGGCGCTGCCCTGCTGTCTGCACATGTGGGGCATTCTGTGGCCGCACAGATGTCCAGCGGTGCTACAGATAAGAAATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 90 bp GGTCAGCTCCATGGCTGTACAGCTCCCCCACATAGTGCCTTCGAATaGCATCGTCGCTCACTTGAAGGTGATGGGCTAAGTCCACAGCCA +
Preference number: 5 (lower is better)
Translates to: GQLHGCTAPPHSAFE*HRRSLEGDGLSPQP
Trigger: TGGCTGTGGACTTAGCCCATCACCTTCAAGTGAGCGACGATGTCATTCGAAGGCACTATGTGGGGGAGCTGTACAGCCATGGAGCTGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 90 bp CCGGAAGTCCAAATCTCACAGCTAGTGGGGTGGCCGGCTCCATCTTaGGCTTCTGCTTCTGGACAGTGTCTTCCTCATGCTTGCTTTTCC +
Preference number: 5 (lower is better)
Translates to: PEVQISQLVGWPAPS*ASASGQCLPHACFS
Trigger: GGAAAAGCAAGCATGAGGAAGACACTGTCCAGAAGCAGAAGCCCAAGATGGAGCCGGCCACCCCACTAGCTGTGAGATTTGGACTTCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 90 bp TCCCAGGAGTCCGTGAGGGCTTCGGCATCTGCATCCAACACCATCTaGGAAAATTTCTTATCTGTAGCACCGCTGGACATCTGTGCGGCC +
Preference number: 5 (lower is better)
Translates to: SQESVRASASASNTI*ENFLSVAPLDICAA
Trigger: GGCCGCACAGATGTCCAGCGGTGCTACAGATAAGAAATTTTCCCAGATGGTGTTGGATGCAGATGCCGAAGCCCTCACGGACTCCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCGTGTCTTCCTCATGCTaGCTTTTCCAACCAAGCCAA +
Preference number: 5 (lower is better)
Translates to: SRRLSWQAAHILCLPECCVSSSC*LFQPSQ
Trigger: TTGGCTTGGTTGGAAAAGCAAGCATGAGGAAGACAC...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CAA 90 bp GCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTTTGAAAGGGACAGTGGCCGGCTCCATCTaGGGCTTCTGCTTCTGGACA +
Preference number: 5 (lower is better)
Translates to: ASRYTTNHEDISVCLKGTVAGSI*GFCFWT
Trigger: TGTCCAGAAGCAGAAGCCCAAGATGGAGCCGGCCAC...TGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CAA 90 bp GACAGGAAGTGGTTAGCACCCAGAGCTCCCTGCCAGGTGGCATCCCGGTACACGAATGCATTCTTTCCCTaGCTGTCAAAAAGGGCGAGT +
Preference number: 5 (lower is better)
Translates to: DRKWLAPRAPCQVASRYTNAFFP*LSKRAS
Trigger: ACTCGCCCTTTTTGACAGCAAGGGAAAGAATGCATT...CGTGTACCGGGATGCCACCTGGCAGGGAGCTCTGGGTGCTAACCACTTCCTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS CCA 90 bp TGTCAAAAAGGGCGAGTGGCTTCACACTCTTCAGAGAAAAGCGCATaGACGCGTACAGGATGGAGCACAGGACGGAATGGTGCTCCACCA +
Preference number: 5 (lower is better)
Translates to: CQKGRVASHSSEKSA*TRTGWSTGRNGAPP
Trigger: TGGTGGAGCACCATTCCGTCCTGTGCTCCATCCTGTACGCGTCCATGCGCTTTTCTCTGAAGAGTGTGAAGCCACTCGCCCTTTTTGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp AGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCGTCCTCATTCAAAAGTaGTGCAAGCAAAAGCACTCC +
Preference number: 5 (lower is better)
Translates to: SRRLSWQAAHILCLPECCVLIQK*CKQKHS
Trigger: GGAGTGCTTTTGCTTGCACAACTTTTGAATGAGGAC...GCAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAAGCCTCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CAA 90 bp GCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTCACTCCAGGGTGTCTaGGGATTTCATAGGTCCTGC +
Preference number: 5 (lower is better)
Translates to: APSCSRTGNMTKSQKQTVSLQGV*GFHRSC
Trigger: GCAGGACCTATGAAATCCCAAGACACCCTGGAGTGA...AACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGATGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS TCA 90 bp ATGGATCTAACCAAAAAGCGAGCTTCCTCCGGGTCTTTGTTCCACTaGACCACATACTCCCAGCAGCAGTGGGCGTGCAGCACATCAAGC +
Preference number: 5 (lower is better)
Translates to: MDLTKKRASSGSLFH*TTYSQQQWACSTSS
Trigger: GCTTGATGTGCTGCACGCCCACTGCTGCTGGGAGTATGTGGTTCAGTGGAACAAAGACCCGGAGGAAGCTCGCTTTTTGGTTAGATCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 90 bp TGCAGGTCCTTGGCTCTTTCACTCTTCTTATCACTCAGCGCTAGATaGAAAGGCACGTTCACCGCCTTCACGCTTGCAGACACAGGGTCA +
Preference number: 5 (lower is better)
Translates to: CRSLALSLFLSLSAR*KGTFTAFTLADTGS
Trigger: TGACCCTGTGTCTGCAAGCGTGAAGGCGGTGAACGTGCCTTTCCATCTAGCGCTGAGTGATAAGAAGAGTGAAAGAGCCAAGGACCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CCCTGCCAGGTGGCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTACTAAGTGCAGGTCCTaGGCTCTTTCACTCTTCTTA +
Preference number: 5 (lower is better)
Translates to: PCQVASRYTTNHEDISVCTKCRS*ALSLFL
Trigger: TAAGAAGAGTGAAAGAGCCAAGGACCTGCACTTAGT...ACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGCCACCTGGCAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS GCA 90 bp GCCGACTCCAGGCTGTGGCACATCTCTTCAGTGGAGCTTTCTCCATaGAAACACTTCCAGAAAAAGAAACTGCCTAGAGCCACACACTCC +
Preference number: 5 (lower is better)
Translates to: ADSRLWHISSVELSP*KHFQKKKLPRATHS
Trigger: GGAGTGTGTGGCTCTAGGCAGTTTCTTTTTCTGGAAGTGTTTGCATGGAGAAAGCTCCACTGAAGAGATGTGCCACAGCCTGGAGTCGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 90 bp GTCCACAGCCAAACCTGGCCAGTTGAGGTCTTTCCAATGAGTGTTTaGTGCTTCTGCAGAGGGATCTTTGTCCTTGGAATGCTGAGCCTG +
Preference number: 5 (lower is better)
Translates to: VHSQTWPVEVFPMSV*CFCRGIFVLGMLSL
Trigger: CAGGCTCAGCATTCCAAGGACAAAGATCCCTCTGCAGAAGCAGCAAACACTCATTGGAAAGACCTCAACTGGCCAGGTTTGGCTGTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 90 bp CTAGCAGCTGAGACGCCAGAACTTCTTTGTCCTGAACTTGAAAAATaGCCTCCTCTCCTAAGAGGTCAGCTCCATGGCTGTACAGCTCCC +
Preference number: 5 (lower is better)
Translates to: LAAETPELLCPELEK*PPLLRGQLHGCTAP
Trigger: GGGAGCTGTACAGCCATGGAGCTGACCTCTTAGGAGAGGAGGCCATTTTTCAAGTTCAGGACAAAGAAGTTCTGGCGTCTCAGCTGCTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp GCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTTTGAAAGGGACAGAGGTCCTCTACAATTaGAATCCATCCGACCTGCGC +
Preference number: 5 (lower is better)
Translates to: ASRYTTNHEDISVCLKGTEVLYN*NPSDLR
Trigger: GCGCAGGTCGGATGGATTCAAATTGTAGAGGACCTC...TGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS GCA 90 bp CTGGGGGACTTGGCTCTCAGCAGGGCTGATAGTTTCTTCACTAAGTaGAGGTCCTTGGCTCTTTCACTCTTCTTATCACTCAGCGCTAGA +
Preference number: 5 (lower is better)
Translates to: LGDLALSRADSFFTK*RSLALSLFLSLSAR
Trigger: TCTAGCGCTGAGTGATAAGAAGAGTGAAAGAGCCAAGGACCTGCACTTAGTGAAGAAACTATCAGCCCTGCTGAGAGCCAAGTCCCCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 90 bp CTCTGGCAGGAGCTCCATCACTTTATGCACGAGTTTAGCTGTTGCTaGAATAGGCACGCCAGTGTTCTGAAGATCCTGAGGGTTCATTGC +
Preference number: 5 (lower is better)
Translates to: LWQELHHFMHEFSCC*NRHASVLKILRVHC
Trigger: GCAATGAACCCTCAGGATCTTCAGAACACTGGCGTGCCTATTGCAGCAACAGCTAAACTCGTGCATAAAGTGATGGAGCTCCTGCCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp GCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTTTGAAAGGGACAGCTGCCAACTCTGACTaGTCACGTTGTTTAAGCCCA +
Preference number: 5 (lower is better)
Translates to: ASRYTTNHEDISVCLKGTAANSD*SRCLSP
Trigger: TGGGCTTAAACAACGTGACAAGTCAGAGTTGGCAGC...TGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS TCA 90 bp TCACTTGAAGGTGATGGGCTAAGTCCACAGCCAAACCTGGCCAGTTaGGGTCTTTCCAATGAGTGTTTGCTGCTTCTGCAGAGGGATCTT +
Preference number: 5 (lower is better)
Translates to: SLEGDGLSPQPNLAS*GLSNECLLLLQRDL
Trigger: AAGATCCCTCTGCAGAAGCAGCAAACACTCATTGGAAAGACCTCAACTGGCCAGGTTTGGCTGTGGACTTAGCCCATCACCTTCAAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 90 bp AGAAACTGCCTAGAGCCACACACTCCTCCTCTCCGACCTTCCTTATaGTCAGTGCATCCTTCTCATACTCTAGATACTCCAGGAAGGTCT +
Preference number: 5 (lower is better)
Translates to: RNCLEPHTPPLRPSL*SVHPSHTLDTPGRS
Trigger: AGACCTTCCTGGAGTATCTAGAGTATGAGAAGGATGCACTGAGCATAAGGAAGGTCGGAGAGGAGGAGTGTGTGGCTCTAGGCAGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 90 bp GGCTACAAGGGAACTGCTCGTAGGCCAGGTGGAGCAAGTCTTCTCTaGGTTCGTCTGGATTTTCTACATCTCTCTCTTTGTTGGCACATT +
Preference number: 5 (lower is better)
Translates to: GYKGTARRPGGASLL*VRLDFLHLSLCWHI
Trigger: AATGTGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGACTTGCTCCACCTGGCCTACGAGCAGTTCCCTTGTAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194740.6
CDS CCA 90 bp TCAACTCCTTTATTTCGGTTTCAAATGAATCCGGCCTGGGGGACTTaGCTCTCAGCAGGGCTGATAGTTTCTTCACTAAGTGCAGGTCCT +
Preference number: 5 (lower is better)
Translates to: STPLFRFQMNPAWGT*LSAGLIVSSLSAGP
Trigger: AGGACCTGCACTTAGTGAAGAAACTATCAGCCCTGCTGAGAGCCAAGTCCCCCAGGCCGGATTCATTTGAAACCGAAATAAAGGAGTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 90 bp ACGTCTCATCGATGGCCACTTTCATCTTGCTCAGCAGGGACAGCATaGTATGAAGGCAGCAGACAGACTGTGGTTTGTCCAAAATGTCTT +
Preference number: 5 (lower is better)
Translates to: TSHRWPLSSCSAGTA*YEGSRQTVVCPKCL
Trigger: AAGACATTTTGGACAAACCACAGTCTGTCTGCTGCCTTCATACCATGCTGTCCCTGCTGAGCAAGATGAAAGTGGCCATCGATGAGACGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CTGGGTGTCTGTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTATACTCCAGGAAGGTCTaGACAGGTAGCACTCTGTCT +
Preference number: 5 (lower is better)
Translates to: LGVCHFVVESLKSILSLLYSRKV*TGSTLS
Trigger: AGACAGAGTGCTACCTGTCAAGACCTTCCTGGAGTA...TAGAAGGCTGAGAATACTCTTCAGGGACTCCACAACAAAGTGACAGACACCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS TCA 90 bp AAGTCTGAGGCTGCCAACTCTGACTTGTCACGTTGTTTAAGCCCATaGTTTTGTAGCCAGGATAGAGTAGCCTGCAGTGTTTACCCACGT +
Preference number: 5 (lower is better)
Translates to: KSEAANSDLSRCLSP*FCSQDRVACSVYPR
Trigger: ACGTGGGTAAACACTGCAGGCTACTCTATCCTGGCTACAAAATCATGGGCTTAAACAACGTGACAAGTCAGAGTTGGCAGCCTCAGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp GCATCCCGGTACACGACCAACCATGAGGACATCTCTGTGTGTTTGAAAGGGACAAAGCGCACGGTGGCTTaGGTGTTTTCTTGTTTATAT +
Preference number: 5 (lower is better)
Translates to: ASRYTTNHEDISVCLKGTKRTVA*VFSCLY
Trigger: ATATAAACAAGAAAACACCAAAGCCACCGTGCGCTT...TGTCCCTTTCAAACACACAGAGATGTCCTCATGGTTGGTCGTGTACCGGGATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS TCA 90 bp GATGCTGCAGCTTTTGCTACTTGGTTTCGACAGGCTCGAAGAGACTaGAAGAGACTAAATCCATCAATCGTCACAATGGCGGCTGGATAT +
Preference number: 5 (lower is better)
Translates to: DAAAFATWFRQARRD*KRLNPSIVTMAAGY
Trigger: ATATCCAGCCGCCATTGTGACGATTGATGGATTTAGTCTCTTTCAGTCTCTTCGAGCCTGTCGAAACCAAGTAGCAAAAGCTGCAGCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 90 bp CCTTTATCACCATGTTTCCATTTTGGCACTAGGAATGCGGCCTTCTaGTCCCGAGCTATAACCATAAGGTCACTGGTTGGAGATAAGGAT +
Preference number: 5 (lower is better)
Translates to: PLSPCFHFGTRNAAF*SRAITIRSLVGDKD
Trigger: ATCCTTATCTCCAACCAGTGACCTTATGGTTATAGCTCGGGAGCAGAAGGCCGCATTCCTAGTGCCAAAATGGAAACATGGTGATAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 90 bp GAACTGCTCGTAGGCCAGGTGGAGCAAGTCTTCTCTGGGTTCGTCTaGATTTTCTACATCTCTCTCTTTGTTGGCACATTTCAACAATTC +
Preference number: 5 (lower is better)
Translates to: ELLVGQVEQVFSGFV*IFYISLFVGTFQQF
Trigger: GAATTGTTGAAATGTGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGACTTGCTCCACCTGGCCTACGAGCAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGTGGCCGGCTCCATCTaGGGCTTCTGCTTCTGGACA +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIVAGSI*GFCFWT
Trigger: TGTCCAGAAGCAGAAGCCCAAGATGGAGCCGGCCAC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGACCCGACTGGGCCCTaGAGTATTTCCAAAGGGGGA +
Preference number: 5 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVDPTGP*SISKGG
Trigger: TCCCCCTTTGGAAATACTCAAGGGCCCAGTCGGGTC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CTTTCTAATGACAAAGAATTGATATTTGTGTGCGCCTGGGTGTCTGTCACTTTGATGGCCACTTTCATCTaGCTCAGCAGGGACAGCATG +
Preference number: 5 (lower is better)
Translates to: LSNDKELIFVCAWVSVTLMATFI*LSRDSM
Trigger: CATGCTGTCCCTGCTGAGCAAGATGAAAGTGGCCAT...CAAAGTGACAGACACCCAGGCGCACACAAATATCAATTCTTTGTCATTAGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS CCA 90 bp TATCAAGAATCAACTCCTTTATTTCGGTTTCAAATGAATCCGGCCTaGGGGACTTGGCTCTCAGCAGGGCTGATAGTTTCTTCACTAAGT +
Preference number: 5 (lower is better)
Translates to: YQESTPLFRFQMNPA*GTWLSAGLIVSSLS
Trigger: ACTTAGTGAAGAAACTATCAGCCCTGCTGAGAGCCAAGTCCCCCAGGCCGGATTCATTTGAAACCGAAATAAAGGAGTTGATTCTTGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGACCCGACTGGGCCCTaGAGTATTTCCAAAGGGGGA +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIDPTGP*SISKGG
Trigger: TCCCCCTTTGGAAATACTCAAGGGCCCAGTCGGGTC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATTCCAGAGCTTGTTTCTaGGTTGCAGGGTACTTAATA +
Preference number: 5 (lower is better)
Translates to: ADYISPGPSICTSNITWNSRACF*VAGYLI
Trigger: TATTAAGTACCCTGCAACCAAGAAACAAGCTCTGGA...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CAA 90 bp GCTGACTACATTTCTCCCGGCCCCTCCATTTGTACATCTAACATAACCTGGAATCAGACAGACTGTGGTTaGTCCAAAATGTCTTTTTCC +
Preference number: 5 (lower is better)
Translates to: ADYISPGPSICTSNITWNQTDCG*SKMSFS
Trigger: GGAAAAAGACATTTTGGACAAACCACAGTCTGTCTG...ATTCCAGGTTATGTTAGATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CAA 90 bp TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACACATCTCTCTCTTTGTaGGCACATTTCAACAATTCA +
Preference number: 5 (lower is better)
Translates to: SCSRTGNMTKSQKQTVLNTSLSL*AHFNNS
Trigger: TGAATTGTTGAAATGTGCCAACAAAGAGAGAGATGT...GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS GCA 90 bp GCCCACAGTGATGTACTGAGACATGGCAGGCGGACTGTTTTTAATTaGTGCATTAAATCCACCTATATTGGAAGCAGTCTTCATTTGATC +
Preference number: 5 (lower is better)
Translates to: AHSDVLRHGRRTVFN*CIKSTYIGSSLHLI
Trigger: GATCAAATGAAGACTGCTTCCAATATAGGTGGATTTAATGCAGCAATTAAAAACAGTCCGCCTGCCATGTCTCAGTACATCACTGTGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATCACTCCAGGGTGTCTaGGGATTTCATAGGTCCTGC +
Preference number: 5 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVSLQGV*GFHRSC
Trigger: GCAGGACCTATGAAATCCCAAGACACCCTGGAGTGA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAGAGGTCCTCTACAATTaGAATCCATCCGACCTGCGC +
Preference number: 5 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVEVLYN*NPSDLR
Trigger: GCGCAGGTCGGATGGATTCAAATTGTAGAGGACCTC...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGATCCTGAGGGTTCATaGCCTTCAGCCAGGTGCAGA +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIDPEGS*PSARCR
Trigger: TCTGCACCTGGCTGAAGGCAATGAACCCTCAGGATC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAATGGCCACTTTCATCTaGCTCAGCAGGGACAGCATG +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIMATFI*LSRDSM
Trigger: CATGCTGTCCCTGCTGAGCAAGATGAAAGTGGCCAT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATGCAGCTTTTGCTACTaGGTTTCGACAGGCTCGAAG +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVICSFCY*VSTGSK
Trigger: CTTCGAGCCTGTCGAAACCAAGTAGCAAAAGCTGCA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGCTGCCAACTCTGACTaGTCACGTTGTTTAAGCCCA +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIAANSD*SRCLSP
Trigger: TGGGCTTAAACAACGTGACAAGTCAGAGTTGGCAGC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATACTCCAGGAAGGTCTaGACAGGTAGCACTCTGTCT +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIYSRKV*TGSTLS
Trigger: AGACAGAGTGCTACCTGTCAAGACCTTCCTGGAGTA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 90 bp CACAGTGATGTACTGAGACATGGCAGGCGGACTGTTTTTAATTGCTaGATTAAATCCACCTATATTGGAAGCAGTCTTCATTTGATCAAA +
Preference number: 5 (lower is better)
Translates to: HSDVLRHGRRTVFNC*IKSTYIGSSLHLIK
Trigger: TTTGATCAAATGAAGACTGCTTCCAATATAGGTGGATTTAATGCAGCAATTAAAAACAGTCCGCCTGCCATGTCTCAGTACATCACTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGTGTCTTCCTCATGCTaGCTTTTCCAACCAAGCCAA +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIVSSSC*LFQPSQ
Trigger: TTGGCTTGGTTGGAAAAGCAAGCATGAGGAAGACAC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAAATGCATTCTTTCCCTaGCTGTCAAAAAGGGCGAGT +
Preference number: 5 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVNAFFP*LSKRAS
Trigger: ACTCGCCCTTTTTGACAGCAAGGGAAAGAATGCATT...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAGTCCTCATTCAAAAGTaGTGCAAGCAAAAGCACTCC +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIVLIQK*CKQKHS
Trigger: GGAGTGCTTTTGCTTGCACAACTTTTGAATGAGGAC...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAACTAAGTGCAGGTCCTaGGCTCTTTCACTCTTCTTA +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVITKCRS*ALSLFL
Trigger: TAAGAAGAGTGAAAGAGCCAAGGACCTGCACTTAGT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATATCCAGAGCTTGTTTCTaGGTTGCAGGGTACTTAATA +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVISRACF*VAGYLI
Trigger: TATTAAGTACCCTGCAACCAAGAAACAAGCTCTGGA...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAAAGCGCACGGTGGCTTaGGTGTTTTCTTGTTTATAT +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIKRTVA*VFSCLY
Trigger: ATATAAACAAGAAAACACCAAAGCCACCGTGCGCTT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATACAGACAGACTGTGGTTaGTCCAAAATGTCTTTTTCC +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVIQTDCG*SKMSFS
Trigger: GGAAAAAGACATTTTGGACAAACCACAGTCTGTCTG...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp ATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGTGTTTAAATATCCACTaGGCTACACTGTCTGCAATA +
Preference number: 5 (lower is better)
Translates to: MISENKGILGNSQHMMVKCLNIH*ATLSAI
Trigger: TATTGCAGACAGTGTAGCCAAGTGGATATTTAAACA...CTTCACCATCATATGCTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS-3UTR CAA 90 bp CTTCAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTATGTTTAAATATCCACTaGGCTACACTGTCTGCAATA +
Preference number: 5 (lower is better)
Translates to: LQSLLKMGNLDRIAHFKVCLNIH*ATLSAI
Trigger: TATTGCAGACAGTGTAGCCAAGTGGATATTTAAACA...TACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTGAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS-3UTR CAA 90 bp CAGTCTTTGCTGAAGATGGGGAATTTAGACAGGATTGCACATTTTAAAGTAATAACATCTCTCTCTTTGTaGGCACATTTCAACAATTCA +
Preference number: 5 (lower is better)
Translates to: QSLLKMGNLDRIAHFKVITSLSL*AHFNNS
Trigger: TGAATTGTTGAAATGTGCCAACAAAGAGAGAGATGT...TATTACTTTAAAATGTGCAATCCTGTCTAAATTCCCCATCTTCAGCAAAGACTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp TGTGCAGACAGCAGGGCAGCGCCGCTGTTCTCTGACTaGATGCAGGCCATGCGCATCTGCTGCCACCAGGGG +
Preference number: 6 (lower is better)
Translates to: CADSRAAPLFSD*MQAMRICCHQG
Trigger: CCCCTGGTGGCAGCAGATGCGCATGGCCTGCATCCAGTCAGAGAACAGCGGCGCTGCCCTGCTGTCTGCACA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp TCTGTAGCACCGCTGGACATCTGTGCGGCCACAGAATaGCCCACATGTGCAGACAGCAGGGCAGCGCCGCTG +
Preference number: 6 (lower is better)
Translates to: SVAPLDICAATE*PTCADSRAAPL
Trigger: CAGCGGCGCTGCCCTGCTGTCTGCACATGTGGGGCATTCTGTGGCCGCACAGATGTCCAGCGGTGCTACAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp CACATGTGCAGACAGCAGGGCAGCGCCGCTGTTCTCTaGCTGGATGCAGGCCATGCGCATCTGCTGCCACCA +
Preference number: 6 (lower is better)
Translates to: HMCRQQGSAAVL*LDAGHAHLLPP
Trigger: TGGTGGCAGCAGATGCGCATGGCCTGCATCCAGTCAGAGAACAGCGGCGCTGCCCTGCTGTCTGCACATGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp TGCAGAGTGTGGGCGGGAGTCTGGCCAGCAGCTCCATaGCTTCCTTCGTCTGGGTGTGGAAAAGCGCGTGAG +
Preference number: 6 (lower is better)
Translates to: CRVWAGVWPAAP*LPSSGCGKARE
Trigger: CTCACGCGCTTTTCCACACCCAGACGAAGGAAGGCATGGAGCTGCTGGCCAGACTCCCGCCCACACTCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp CCTGAGGGTTCATTGCCTTCAGCCAGGTGCAGAGTGTaGGCGGGAGTCTGGCCAGCAGCTCCATGCCTTCCT +
Preference number: 6 (lower is better)
Translates to: PEGSLPSARCRV*AGVWPAAPCLP
Trigger: AGGAAGGCATGGAGCTGCTGGCCAGACTCCCGCCCACACTCTGCACCTGGCTGAAGGCAATGAACCCTCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp GCGGAGGTCAGCTTACTTGCAACAGCGAGCGCGACGTaGGACAACAGAGGCTGCGTGCTTCCCTCGAGAGCA +
Preference number: 6 (lower is better)
Translates to: AEVSLLATASAT*DNRGCVLPSRA
Trigger: TGCTCTCGAGGGAAGCACGCAGCCTCTGTTGTCTCACGTCGCGCTCGCTGTTGCAAGTAAGCTGACCTCCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp ACTGGCGGCACTGAAGAGGGCGGAGGTCAGCTTACTTaGAACAGCGAGCGCGACGTGAGACAACAGAGGCTG +
Preference number: 6 (lower is better)
Translates to: TGGTEEGGGQLT*NSERDVRQQRL
Trigger: CAGCCTCTGTTGTCTCACGTCGCGCTCGCTGTTGCAAGTAAGCTGACCTCCGCCCTCTTCAGTGCCGCCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp ACTCCGTGTCCAGAGAGAGAGCTTCCCAGGAGTCCGTaGGGGCTTCGGCATCTGCATCCAACACCATCTGGG +
Preference number: 6 (lower is better)
Translates to: TPCPERELPRSP*GLRHLHPTPSG
Trigger: CCCAGATGGTGTTGGATGCAGATGCCGAAGCCCTCACGGACTCCTGGGAAGCTCTCTCTCTGGACACGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp TCTGAAGATCCTGAGGGTTCATTGCCTTCAGCCAGGTaGAGAGTGTGGGCGGGAGTCTGGCCAGCAGCTCCA +
Preference number: 6 (lower is better)
Translates to: SEDPEGSLPSAR*RVWAGVWPAAP
Trigger: TGGAGCTGCTGGCCAGACTCCCGCCCACACTCTGCACCTGGCTGAAGGCAATGAACCCTCAGGATCTTCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp AGGGCGCCCAGTGGAACTCCTCTTCTGACTCGCCAGTaGGATGCACAGGGCACTGGTTACATACTCCCCTTC +
Preference number: 6 (lower is better)
Translates to: RAPSGTPLLTRQ*DAQGTGYILPF
Trigger: GAAGGGGAGTATGTAACCAGTGCCCTGTGCATCCCACTGGCGAGTCAGAAGAGGAGTTCCACTGGGCGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp CAGTGGCTCCGACTGCAGAGATGGTGCTTTGGCGGCTaGGGGGCTCAATTTGCTATGCAGCAGAGTCTGGAG +
Preference number: 6 (lower is better)
Translates to: QWLRLQRWCFGG*GAQFAMQQSLE
Trigger: CTCCAGACTCTGCTGCATAGCAAATTGAGCCCCCCAGCCGCCAAAGCACCATCTCTGCAGTCGGAGCCACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp GACAGCCAGGCGTCCTCAGTGTCCAGGACGGGCACCTaGACTTCATCCCTGCTAATGTCAGCCTCCAATGAC +
Preference number: 6 (lower is better)
Translates to: DSQASSVSRTGT*TSSLLMSASND
Trigger: GTCATTGGAGGCTGACATTAGCAGGGATGAAGTCCAGGTGCCCGTCCTGGACACTGAGGACGCCTGGCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp TCCACGGCATCGATGAGGTGTAAGGCGAGGCTGTACTaGCCGTGCTTCTCTGGCAGGAGCTCCATCACTTTA +
Preference number: 6 (lower is better)
Translates to: STASMRCKARLY*PCFSGRSSITL
Trigger: TAAAGTGATGGAGCTCCTGCCAGAGAAGCACGGGCAGTACAGCCTCGCCTTACACCTCATCGATGCCGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp GTGGTGCATAGATCACAAGGAACTGAGCGACCCGACTaGGCCCTTGAGTATTTCCAAAGGGGGAGAAGCCCC +
Preference number: 6 (lower is better)
Translates to: VVHRSQGTERPD*ALEYFQRGRSP
Trigger: GGGGCTTCTCCCCCTTTGGAAATACTCAAGGGCCCAGTCGGGTCGCTCAGTTCCTTGTGATCTATGCACCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp CACTCTTCAGAGAAAAGCGCATGGACGCGTACAGGATaGAGCACAGGACGGAATGGTGCTCCACCAGTGGGT +
Preference number: 6 (lower is better)
Translates to: HSSEKSAWTRTG*STGRNGAPPVG
Trigger: ACCCACTGGTGGAGCACCATTCCGTCCTGTGCTCCATCCTGTACGCGTCCATGCGCTTTTCTCTGAAGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp GATGCACAGGGCACTGGTTACATACTCCCCTTCCTCTaGACTTACGGAGCCGCTCCAACCAACAGCAAACTG +
Preference number: 6 (lower is better)
Translates to: DAQGTGYILPFL*TYGAAPTNSKL
Trigger: CAGTTTGCTGTTGGTTGGAGCGGCTCCGTAAGTGCAGAGGAAGGGGAGTATGTAACCAGTGCCCTGTGCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp ACAGCTAGTGGGGTGGCCGGCTCCATCTTGGGCTTCTaGTTCTGGACAGTGTCTTCCTCATGCTTGCTTTTC +
Preference number: 6 (lower is better)
Translates to: TASGVAGSILGF*FWTVSSSCLLF
Trigger: GAAAAGCAAGCATGAGGAAGACACTGTCCAGAAGCAGAAGCCCAAGATGGAGCCGGCCACCCCACTAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp CAAATCTCACAGCTAGTGGGGTGGCCGGCTCCATCTTaGGCTTCTGCTTCTGGACAGTGTCTTCCTCATGCT +
Preference number: 6 (lower is better)
Translates to: QISQLVGWPAPS*ASASGQCLPHA
Trigger: AGCATGAGGAAGACACTGTCCAGAAGCAGAAGCCCAAGATGGAGCCGGCCACCCCACTAGCTGTGAGATTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp AAACACTTAGGAGCAGAGACAGTAACTGCTGAGGGCTaGGTCCAGCCGACTCCAGGCTGTGGCACATCTCTT +
Preference number: 6 (lower is better)
Translates to: KHLGAETVTAEG*VQPTPGCGTSL
Trigger: AAGAGATGTGCCACAGCCTGGAGTCGGCTGGACTCAGCCCTCAGCAGTTACTGTCTCTGCTCCTAAGTGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp GGTGATGGGCTAAGTCCACAGCCAAACCTGGCCAGTTaGGGTCTTTCCAATGAGTGTTTGCTGCTTCTGCAG +
Preference number: 6 (lower is better)
Translates to: GDGLSPQPNLAS*GLSNECLLLLQ
Trigger: CTGCAGAAGCAGCAAACACTCATTGGAAAGACCTCAACTGGCCAGGTTTGGCTGTGGACTTAGCCCATCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp CATGGCTGTACAGCTCCCCCACATAGTGCCTTCGAATaGCATCGTCGCTCACTTGAAGGTGATGGGCTAAGT +
Preference number: 6 (lower is better)
Translates to: HGCTAPPHSAFE*HRRSLEGDGLS
Trigger: ACTTAGCCCATCACCTTCAAGTGAGCGACGATGTCATTCGAAGGCACTATGTGGGGGAGCTGTACAGCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp GGAAAATTTCTTATCTGTAGCACCGCTGGACATCTGTaGGGCCACAGAATGCCCCACATGTGCAGACAGCAG +
Preference number: 6 (lower is better)
Translates to: GKFLICSTAGHL*GHRMPHMCRQQ
Trigger: CTGCTGTCTGCACATGTGGGGCATTCTGTGGCCGCACAGATGTCCAGCGGTGCTACAGATAAGAAATTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp GCTGCTTCTGCAGAGGGATCTTTGTCCTTGGAATGCTaGGCCTGGACAGCTGCACTGACAACTTTCAGTAAG +
Preference number: 6 (lower is better)
Translates to: AASAEGSLSLEC*AWTAALTTFSK
Trigger: CTTACTGAAAGTTGTCAGTGCAGCTGTCCAGGCTCAGCATTCCAAGGACAAAGATCCCTCTGCAGAAGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp GAGAGCTTCCCAGGAGTCCGTGAGGGCTTCGGCATCTaGATCCAACACCATCTGGGAAAATTTCTTATCTGT +
Preference number: 6 (lower is better)
Translates to: ESFPGVREGFGI*IQHHLGKFLIC
Trigger: ACAGATAAGAAATTTTCCCAGATGGTGTTGGATGCAGATGCCGAAGCCCTCACGGACTCCTGGGAAGCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp TTGGCTCTTTCACTCTTCTTATCACTCAGCGCTAGATaGAAAGGCACGTTCACCGCCTTCACGCTTGCAGAC +
Preference number: 6 (lower is better)
Translates to: LALSLFLSLSAR*KGTFTAFTLAD
Trigger: GTCTGCAAGCGTGAAGGCGGTGAACGTGCCTTTCCATCTAGCGCTGAGTGATAAGAAGAGTGAAAGAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp TTTTCTGGCACTCGTTCATGGAGGTCCTCTACAATTTaGATCCATCCGACCTGCGCATCCCGATACCCTTTC +
Preference number: 6 (lower is better)
Translates to: FSGTRSWRSSTI*IHPTCASRYPF
Trigger: GAAAGGGTATCGGGATGCGCAGGTCGGATGGATTCAAATTGTAGAGGACCTCCATGAACGAGTGCCAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp GCCACTTTCATCTTGCTCAGCAGGGACAGCATGGTATaGAGGCAGCAGACAGACTGTGGTTTGTCCAAAATG +
Preference number: 6 (lower is better)
Translates to: ATFILLSRDSMV*RQQTDCGLSKM
Trigger: CATTTTGGACAAACCACAGTCTGTCTGCTGCCTTCATACCATGCTGTCCCTGCTGAGCAAGATGAAAGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp ACCTGGCCAGTTGAGGTCTTTCCAATGAGTGTTTGCTaGTTCTGCAGAGGGATCTTTGTCCTTGGAATGCTG +
Preference number: 6 (lower is better)
Translates to: TWPVEVFPMSVC*FCRGIFVLGML
Trigger: CAGCATTCCAAGGACAAAGATCCCTCTGCAGAAGCAGCAAACACTCATTGGAAAGACCTCAACTGGCCAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp GAGCTCCATCACTTTATGCACGAGTTTAGCTGTTGCTaGAATAGGCACGCCAGTGTTCTGAAGATCCTGAGG +
Preference number: 6 (lower is better)
Translates to: ELHHFMHEFSCC*NRHASVLKILR
Trigger: CCTCAGGATCTTCAGAACACTGGCGTGCCTATTGCAGCAACAGCTAAACTCGTGCATAAAGTGATGGAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp CAGGAGCTCCATCACTTTATGCACGAGTTTAGCTGTTaGTGCAATAGGCACGCCAGTGTTCTGAAGATCCTG +
Preference number: 6 (lower is better)
Translates to: QELHHFMHEFSC*CNRHASVLKIL
Trigger: CAGGATCTTCAGAACACTGGCGTGCCTATTGCAGCAACAGCTAAACTCGTGCATAAAGTGATGGAGCTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp GAGACGCCAGAACTTCTTTGTCCTGAACTTGAAAAATaGCCTCCTCTCCTAAGAGGTCAGCTCCATGGCTGT +
Preference number: 6 (lower is better)
Translates to: ETPELLCPELEK*PPLLRGQLHGC
Trigger: ACAGCCATGGAGCTGACCTCTTAGGAGAGGAGGCCATTTTTCAAGTTCAGGACAAAGAAGTTCTGGCGTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp GGAACTGCTCGTAGGCCAGGTGGAGCAAGTCTTCTCTaGGTTCGTCTGGATTTTCTACATCTCTCTCTTTGT +
Preference number: 6 (lower is better)
Translates to: GTARRPGGASLL*VRLDFLHLSLC
Trigger: ACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGACTTGCTCCACCTGGCCTACGAGCAGTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194740.6
CDS CAA 72 bp CTTTTCTGGCACTCGTTCATGGAGGTCCTCTACAATTaGAATCCATCCGACCTGCGCATCCCGATACCCTTT +
Preference number: 6 (lower is better)
Translates to: LFWHSFMEVLYN*NPSDLRIPIPF
Trigger: AAAGGGTATCGGGATGCGCAGGTCGGATGGATTCAAATTGTAGAGGACCTCCATGAACGAGTGCCAGAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CAA 90 bp TTGGCTCTCAGCAGGGCTGATAGTTTCTTCACTAAGTGCAGGTCCTaGGCTCTTTCACTCTTCTTATCACTCAGCGCTAGATGGAAAGGC +
Preference number: 6 (lower is better)
Translates to: LALSRADSFFTKCRS*ALSLFLSLSARWKG
Trigger: GCCTTTCCATCTAGCGCTGAGTGATAAGAAGAGTGAAAGAGCCAAGGACCTGCACTTAGTGAAGAAACTATCAGCCCTGCTGAGAGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp CAAACCTGGCCAGTTGAGGTCTTTCCAATGAGTGTTTaGTGCTTCTGCAGAGGGATCTTTGTCCTTGGAATG +
Preference number: 6 (lower is better)
Translates to: QTWPVEVFPMSV*CFCRGIFVLGM
Trigger: CATTCCAAGGACAAAGATCCCTCTGCAGAAGCAGCAAACACTCATTGGAAAGACCTCAACTGGCCAGGTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp AGGGTATTACAAGGAGACAGGCATATGCTTTCTCCGTaGCGTCTAGAATCCGGAAGTCCAAATCTCACAGCT +
Preference number: 6 (lower is better)
Translates to: RVLQGDRHMLSP*RLESGSPNLTA
Trigger: AGCTGTGAGATTTGGACTTCCGGATTCTAGACGCCACGGAGAAAGCATATGCCTGTCTCCTTGTAATACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp TCAACTCCTTTATTTCGGTTTCAAATGAATCCGGCCTaGGGGACTTGGCTCTCAGCAGGGCTGATAGTTTCT +
Preference number: 6 (lower is better)
Translates to: STPLFRFQMNPA*GTWLSAGLIVS
Trigger: AGAAACTATCAGCCCTGCTGAGAGCCAAGTCCCCCAGGCCGGATTCATTTGAAACCGAAATAAAGGAGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp AAATGCATTCTTTCCCTTGCTGTCAAAAAGGGCGAGTaGCTTCACACTCTTCAGAGAAAAGCGCATGGACGC +
Preference number: 6 (lower is better)
Translates to: KCILSLAVKKGE*LHTLQRKAHGR
Trigger: GCGTCCATGCGCTTTTCTCTGAAGAGTGTGAAGCCACTCGCCCTTTTTGACAGCAAGGGAAAGAATGCATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp AATATCAAGAATCAACTCCTTTATTTCGGTTTCAAATaGATCCGGCCTGGGGGACTTGGCTCTCAGCAGGGC +
Preference number: 6 (lower is better)
Translates to: NIKNQLLYFGFK*IRPGGLGSQQG
Trigger: GCCCTGCTGAGAGCCAAGTCCCCCAGGCCGGATTCATTTGAAACCGAAATAAAGGAGTTGATTCTTGATATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp ATCCATCAATCGTCACAATGGCGGCTGGATATAAGATaGTCAGTTCTTCATTCTGCTCAGTCACTCCAGGGT +
Preference number: 6 (lower is better)
Translates to: IHQSSQWRLDIR*SVLHSAQSLQG
Trigger: ACCCTGGAGTGACTGAGCAGAATGAAGAACTGAGCATCTTATATCCAGCCGCCATTGTGACGATTGATGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp TTGGCTCTCAGCAGGGCTGATAGTTTCTTCACTAAGTaGAGGTCCTTGGCTCTTTCACTCTTCTTATCACTC +
Preference number: 6 (lower is better)
Translates to: LALSRADSFFTK*RSLALSLFLSL
Trigger: GAGTGATAAGAAGAGTGAAAGAGCCAAGGACCTGCACTTAGTGAAGAAACTATCAGCCCTGCTGAGAGCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp TTATTTCGGTTTCAAATGAATCCGGCCTGGGGGACTTaGCTCTCAGCAGGGCTGATAGTTTCTTCACTAAGT +
Preference number: 6 (lower is better)
Translates to: LFRFQMNPAWGT*LSAGLIVSSLS
Trigger: ACTTAGTGAAGAAACTATCAGCCCTGCTGAGAGCCAAGTCCCCCAGGCCGGATTCATTTGAAACCGAAATAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp GTAGGCCAGGTGGAGCAAGTCTTCTCTGGGTTCGTCTaGATTTTCTACATCTCTCTCTTTGTTGGCACATTT +
Preference number: 6 (lower is better)
Translates to: VGQVEQVFSGFV*IFYISLFVGTF
Trigger: AAATGTGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGACTTGCTCCACCTGGCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194740.6
CDS CAA 72 bp AGCAGGGCTGATAGTTTCTTCACTAAGTGCAGGTCCTaGGCTCTTTCACTCTTCTTATCACTCAGCGCTAGA +
Preference number: 6 (lower is better)
Translates to: SRADSFFTKCRS*ALSLFLSLSAR
Trigger: TCTAGCGCTGAGTGATAAGAAGAGTGAAAGAGCCAAGGACCTGCACTTAGTGAAGAAACTATCAGCCCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CAA 72 bp GCATCCTTCTCATACTCTAGATACTCCAGGAAGGTCTaGACAGGTAGCACTCTGTCTGCATCCTCAGAAAAG +
Preference number: 6 (lower is better)
Translates to: ASFSYSRYSRKV*TGSTLSASSEK
Trigger: CTTTTCTGAGGATGCAGACAGAGTGCTACCTGTCAAGACCTTCCTGGAGTATCTAGAGTATGAGAAGGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp GCTTTTGCTACTTGGTTTCGACAGGCTCGAAGAGACTaGAAGAGACTAAATCCATCAATCGTCACAATGGCG +
Preference number: 6 (lower is better)
Translates to: AFATWFRQARRD*KRLNPSIVTMA
Trigger: CGCCATTGTGACGATTGATGGATTTAGTCTCTTTCAGTCTCTTCGAGCCTGTCGAAACCAAGTAGCAAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CAA 72 bp TCTCTGGGTTCGTCTGGATTTTCTACATCTCTCTCTTaGTTGGCACATTTCAACAATTCAGGGCTGAGGTCC +
Preference number: 6 (lower is better)
Translates to: SLGSSGFSTSLS*LAHFNNSGLRS
Trigger: GGACCTCAGCCCTGAATTGTTGAAATGTGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CAA 90 bp ATAGGTCCTGCATTTAAGCTGAAGCACTTTGTCCTCATTCAAAAGTaGTGCAAGCAAAAGCACTCCACTCTCAGTGTAGAAGCGCACATA +
Preference number: 6 (lower is better)
Translates to: IGPAFKLKHFVLIQK*CKQKHSTLSVEAHI
Trigger: TATGTGCGCTTCTACACTGAGAGTGGAGTGCTTTTGCTTGCACAACTTTTGAATGAGGACAAAGTGCTTCAGCTTAAATGCAGGACCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp TTTAAGCTGAAGCACTTTGTCCTCATTCAAAAGTTGTaGAAGCAAAAGCACTCCACTCTCAGTGTAGAAGCG +
Preference number: 6 (lower is better)
Translates to: FKLKHFVLIQKL*KQKHSTLSVEA
Trigger: CGCTTCTACACTGAGAGTGGAGTGCTTTTGCTTGCACAACTTTTGAATGAGGACAAAGTGCTTCAGCTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CAA 90 bp AGCAAGTCTTCTCTGGGTTCGTCTGGATTTTCTACATCTCTCTCTTaGTTGGCACATTTCAACAATTCAGGGCTGAGGTCCTGTTTAAAT +
Preference number: 6 (lower is better)
Translates to: SKSSLGSSGFSTSLS*LAHFNNSGLRSCLN
Trigger: ATTTAAACAGGACCTCAGCCCTGAATTGTTGAAATGTGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGACTTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194740.6
CDS GCA 72 bp GTACTGAGACATGGCAGGCGGACTGTTTTTAATTGCTaGATTAAATCCACCTATATTGGAAGCAGTCTTCAT +
Preference number: 6 (lower is better)
Translates to: VLRHGRRTVFNC*IKSTYIGSSLH
Trigger: ATGAAGACTGCTTCCAATATAGGTGGATTTAATGCAGCAATTAAAAACAGTCCGCCTGCCATGTCTCAGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS GCA 72 bp GATGTACTGAGACATGGCAGGCGGACTGTTTTTAATTaGTGCATTAAATCCACCTATATTGGAAGCAGTCTT +
Preference number: 6 (lower is better)
Translates to: DVLRHGRRTVFN*CIKSTYIGSSL
Trigger: AAGACTGCTTCCAATATAGGTGGATTTAATGCAGCAATTAAAAACAGTCCGCCTGCCATGTCTCAGTACATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CCA 72 bp AGGGAAACTTCGTGTAATACCTTCTCTGGGTTCGTCTaGATTTTCTACATCTCTCTCTTTGTTGGCACATTT +
Preference number: 6 (lower is better)
Translates to: RETSCNTFSGFV*IFYISLFVGTF
Trigger: AAATGTGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGGTATTACACGAAGTTTCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS CAA 72 bp GCATTTAAGCTGAAGCACTTTGTCCTCATTCAAAAGTaGTGCAAGCAAAAGCACTCCACTCTCAGTGTAGAA +
Preference number: 6 (lower is better)
Translates to: AFKLKHFVLIQK*CKQKHSTLSVE
Trigger: TTCTACACTGAGAGTGGAGTGCTTTTGCTTGCACAACTTTTGAATGAGGACAAAGTGCTTCAGCTTAAATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS CAA 90 bp ATACCTTCTCTGGGTTCGTCTGGATTTTCTACATCTCTCTCTTTGTaGGCACATTTCAACAATTCAGGGCTGAGGTCCTGTTTAAATATC +
Preference number: 6 (lower is better)
Translates to: IPSLGSSGFSTSLSL*AHFNNSGLRSCLNI
Trigger: GATATTTAAACAGGACCTCAGCCCTGAATTGTTGAAATGTGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS CAA 90 bp GTAATACCTTCTCTGGGTTCGTCTGGATTTTCTACATCTCTCTCTTaGTTGGCACATTTCAACAATTCAGGGCTGAGGTCCTGTTTAAAT +
Preference number: 6 (lower is better)
Translates to: VIPSLGSSGFSTSLS*LAHFNNSGLRSCLN
Trigger: ATTTAAACAGGACCTCAGCCCTGAATTGTTGAAATGTGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGGTATTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069652.8
CDS CAA 90 bp AAGTCTTCTCTGGGTTCGTCTGGATTTTCTACATCTCTCTCTTTGTaGGCACATTTCAACAATTCAGGGCTGAGGTCCTGTTTAAATATC +
Preference number: 6 (lower is better)
Translates to: KSSLGSSGFSTSLSL*AHFNNSGLRSCLNI
Trigger: GATATTTAAACAGGACCTCAGCCCTGAATTGTTGAAATGTGCCAACAAAGAGAGAGATGTAGAAAATCCAGACGAACCCAGAGAAGACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194740.6
CDS TCA 72 bp ACCTATATTGGAAGCAGTCTTCATTTGATCAAATGGTaGCAGAGTCATAATACCAATACTAGCATGATCGAT +
Preference number: 6 (lower is better)
Translates to: TYIGSSLHLIKW*QSHNTNTSMID
Trigger: ATCGATCATGCTAGTATTGGTATTATGACTCTGTCACCATTTGATCAAATGAAGACTGCTTCCAATATAGGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6
CDS TCA 72 bp GGGTGTCTGAGTGAAAGTCAAGCGTATTTAACTGACTaGCAGATTCATAAAGATGTAGTAGTTTTAATTTAC +
Preference number: 6 (lower is better)
Translates to: GCLSESQAYLTD*QIHKDVVVLIY
Trigger: GTAAATTAAAACTACTACATCTTTATGAATCTGTCAGTCAGTTAAATACGCTTGACTTTCACTCAGACACCC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069652.8
ENSMUST00000194740.6