Pregenerated sensors for RAB3D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019066Ensembl transcript IDs: ENSMUST00000115351.10, ENSMUST00000119055.8, ENSMUST00000122211.8
Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGTGTCTGAGCATTCTGACATGGAGAGAAAGGGACATGAACTTGTaGAAGAGGAGTGGGAAGTGGCCCAGAGGCAAGGGTGCCCTGAGC | + |
|
Preference number: 1 (lower is better) Translates to: ECLSILTWRERDMNL*KRSGKWPRGKGALS Trigger: GCTCAGGGCACCCTTGCCTCTGGGCCACTTCCCACTCCTCTTGCACAAGTTCATGTCCCTTTCTCTCCATGTCAGAATGCTCAGACACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 90 bp | CCGGGGTGTGTGGGCTCTAACCAGGAGTGTCTGAGCATTCTGACATaGAGAGAAAGGGACATGAACTTGTGCAAGAGGAGTGGGAAGTGG | + |
|
Preference number: 1 (lower is better) Translates to: PGCVGSNQECLSILT*RERDMNLCKRSGKW Trigger: CCACTTCCCACTCCTCTTGCACAAGTTCATGTCCCTTTCTCTCCATGTCAGAATGCTCAGACACTCCTGGTTAGAGCCCACACACCCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 90 bp | TCTACCTCATGGATCCCGAGGTCTAACTCAGGTCATCAGGCTTGGTaGCAGTGTCTTCAGATGAGCCATTCCACCAGCCAAATCCCCAGT | + |
|
Preference number: 1 (lower is better) Translates to: STSWIPRSNSGHQAW*QCLQMSHSTSQIPS Trigger: ACTGGGGATTTGGCTGGTGGAATGGCTCATCTGAAGACACTGCCACCAAGCCTGATGACCTGAGTTAGACCTCGGGATCCATGAGGTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 90 bp | TCTTCTACCTCATGGATCCCGAGGTCTAACTCAGGTCATCAGGCTTaGTGGCAGTGTCTTCAGATGAGCCATTCCACCAGCCAAATCCCC | + |
|
Preference number: 1 (lower is better) Translates to: SSTSWIPRSNSGHQA*WQCLQMSHSTSQIP Trigger: GGGGATTTGGCTGGTGGAATGGCTCATCTGAAGACACTGCCACCAAGCCTGATGACCTGAGTTAGACCTCGGGATCCATGAGGTAGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 90 bp | ACACTGACTGTGCACACACCCTTGCTCACCGTGGAGGGGAGATGGTaGCTTAAAGGGCTCATTTCTCTTCTTCTACCTCATGGATCCCGA | + |
|
Preference number: 1 (lower is better) Translates to: TLTVHTPLLTVEGRW*LKGLISLLLPHGSR Trigger: TCGGGATCCATGAGGTAGAAGAAGAGAAATGAGCCCTTTAAGCCACCATCTCCCCTCCACGGTGAGCAAGGGTGTGTGCACAGTCAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 90 bp | AGCCATTCCACCAGCCAAATCCCCAGTTGTAAGAAAACCACAGGGTaGCTTCCTCTGTGGGTGTTCAGAGTAGAAGTGAAGGAGCCTCTT | + |
|
Preference number: 1 (lower is better) Translates to: SHSTSQIPSCKKTTG*LPLWVFRVEVKEPL Trigger: AAGAGGCTCCTTCACTTCTACTCTGAACACCCACAGAGGAAGCCACCCTGTGGTTTTCTTACAACTGGGGATTTGGCTGGTGGAATGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 90 bp | TCTGTCACCTGGACCATGAAATGTCAGATAGTGTTTAGGGGAGTCTaGTCAGTGAATAGAAATAGAACCCAGGGTCCTAGGGGCTACGTC | + |
|
Preference number: 1 (lower is better) Translates to: SVTWTMKCQIVFRGV*SVNRNRTQGPRGYV Trigger: GACGTAGCCCCTAGGACCCTGGGTTCTATTTCTATTCACTGACCAGACTCCCCTAAACACTATCTGACATTTCATGGTCCAGGTGACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR GCA 90 bp | TCCTGTCATAAGAAACTGACCAGCAAGGGCACACCCTCTGTGGGCTaGTTTCTCCACTTCCGTTTCTACACAGGATGTAAGGTTTGTAAA | + |
|
Preference number: 1 (lower is better) Translates to: SCHKKLTSKGTPSVG*FLHFRFYTGCKVCK Trigger: TTTACAAACCTTACATCCTGTGTAGAAACGGAAGTGGAGAAAGCAGCCCACAGAGGGTGTGCCCTTGCTGGTCAGTTTCTTATGACAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 90 bp | AATACTCCAAAATTTAATTCTGGGAGTAGATTAACCCACACTGAGTaGATAGACTCAGGGGAAGCTGGGAAGGCACTTTGGAGAGTTCCC | + |
|
Preference number: 1 (lower is better) Translates to: NTPKFNSGSRLTHTE*IDSGEAGKALWRVP Trigger: GGGAACTCTCCAAAGTGCCTTCCCAGCTTCCCCTGAGTCTATCCACTCAGTGTGGGTTAATCTACTCCCAGAATTAAATTTTGGAGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | GTAAAGCTCTTGCCTAAGCCACCACCAGGCAGACAGATGGGAGCCTGGGCAGGCGCTGGGAAGGCACTTTaGAGAGTTCCCGGTGCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: VKLLPKPPPGRQMGAWAGAGKAL*RVPGAR Trigger: CCTGGCACCGGGAACTCTCCAAAGTGCCTTCCCAGC...GCCTGCCCAGGCTCCCATCTGTCTGCCTGGTGGTGGCTTAGGCAAGAGCTTTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR GCA 90 bp | AAGGACTCCTGCTCCCATGACGGACTGGGTTGCCCACTAGTGCCTTCCCCCAGTGCAGAGGATGGAGACTaGAGCCCTGCCTGTGTCCTT | + |
|
Preference number: 2 (lower is better) Translates to: KDSCSHDGLGCPLVPSPSAEDGD*SPACVL Trigger: AAGGACACAGGCAGGGCTGCAGTCTCCATCCTCTGC...ACTGGGGGAAGGCACTAGTGGGCAACCCAGTCCGTCATGGGAGCAGGAGTCCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | AGCCCATCCCTAATTCACAGGAAGGACTCCTGCTCCCATGACGGACTGGGTTGCCAGGGAGGCAGAGGATaGAGACTGCAGCCCTGCCTG | + |
|
Preference number: 2 (lower is better) Translates to: SPSLIHRKDSCSHDGLGCQGGRG*RLQPCL Trigger: CAGGCAGGGCTGCAGTCTCCATCCTCTGCCTCCCTG...GCAACCCAGTCCGTCATGGGAGCAGGAGTCCTTCCTGTGAATTAGGGATGGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | CTTCTGTTTATAAACCCATCAGGCTCCCGTCCCTCTCGGCCATCTGCACAGACGTCTGGCTGTGGGGGCTaGAGGAGTACACTCCACCCC | + |
|
Preference number: 2 (lower is better) Translates to: LLFINPSGSRPSRPSAQTSGCGG*RSTLHP Trigger: GGGGTGGAGTGTACTCCTTCAGCCCCCACAGCCAGA...CGTCTGTGCAGATGGCCGAGAGGGACGGGAGCCTGATGGGTTTATAAACAGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | GTAAAGCTCTTGCCTAAGCCACCACCAGGCAGACAGATGGGAGCCTGGGCAGGCAAGAAGGGACAGGTGTaGGGAGGTAAGGGGCTGAAC | + |
|
Preference number: 2 (lower is better) Translates to: VKLLPKPPPGRQMGAWAGKKGQV*GGKGLN Trigger: GTTCAGCCCCTTACCTCCCCACACCTGTCCCTTCTT...GCCTGCCCAGGCTCCCATCTGTCTGCCTGGTGGTGGCTTAGGCAAGAGCTTTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | TGGAGCCAGGAGCAGAATCAGCACACGGAAACAGAGACCAGGACGGGGCCAAGGCCCTGCCTGTGTCCTTaGCTAGCAGTCAGTTCACAG | + |
|
Preference number: 2 (lower is better) Translates to: WSQEQNQHTETETRTGPRPCLCP*LAVSSQ Trigger: CTGTGAACTGACTGCTAGCCAAGGACACAGGCAGGG...CCTTGGCCCCGTCCTGGTCTCTGTTTCCGTGTGCTGATTCTGCTCCTGGCTCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CAA 90 bp | GGAAACAGAGACCAGGACGGGGCCAAGGCCCAGTTGGTAGAATGTTaGCCTAGCATGCAGGAAGTCCTGGGCTCCATCCCTAGCACTGCA | + |
|
Preference number: 2 (lower is better) Translates to: GNRDQDGAKAQLVEC*PSMQEVLGSIPSTA Trigger: TGCAGTGCTAGGGATGGAGCCCAGGACTTCCTGCATGCTAGGCAAACATTCTACCAACTGGGCCTTGGCCCCGTCCTGGTCTCTGTTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | TGGAGCCAGGAGCAGAATCAGCACACGGAAACAGAGACCAGGACGGGGCCAAGGGGCTCTGAGGTGAACTaGCAGAAAGCTGGACTGCTA | + |
|
Preference number: 2 (lower is better) Translates to: WSQEQNQHTETETRTGPRGSEVN*QKAGLL Trigger: TAGCAGTCCAGCTTTCTGTCAGTTCACCTCAGAGCC...CCTTGGCCCCGTCCTGGTCTCTGTTTCCGTGTGCTGATTCTGCTCCTGGCTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | CTGTGCACACACCCTTGCTCACCGTGGAGGGGAGATGGTGGCTTAAAGGGCTCAAAGAAGGGACAGGTGTaGGGAGGTAAGGGGCTGAAC | + |
|
Preference number: 2 (lower is better) Translates to: LCTHPCSPWRGDGGLKGSKKGQV*GGKGLN Trigger: GTTCAGCCCCTTACCTCCCCACACCTGTCCCTTCTT...TGAGCCCTTTAAGCCACCATCTCCCCTCCACGGTGAGCAAGGGTGTGTGCACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CAA 90 bp | CAGGAGTGTCTGAGCATTCTGACATGGAGAGAAAGGGACATGAACTaGTGCAAGAGGAGTGGGAAGTGGCCCAGAGGCAAGGGTGCCCTG | + |
|
Preference number: 2 (lower is better) Translates to: QECLSILTWRERDMN*CKRSGKWPRGKGAL Trigger: CAGGGCACCCTTGCCTCTGGGCCACTTCCCACTCCTCTTGCACAAGTTCATGTCCCTTTCTCTCCATGTCAGAATGCTCAGACACTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | CTGTGCACACACCCTTGCTCACCGTGGAGGGGAGATGGTGGCTTAAAGGGCTCAGGAGAGAAAGGGACATaGACTTGTGCAAGAGGAGTG | + |
|
Preference number: 2 (lower is better) Translates to: LCTHPCSPWRGDGGLKGSGEKGT*TCARGV Trigger: CACTCCTCTTGCACAAGTTCATGTCCCTTTCTCTCC...TGAGCCCTTTAAGCCACCATCTCCCCTCCACGGTGAGCAAGGGTGTGTGCACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | GAGATCCACCTGCCTCTGCCTCCAGAATGCTGGGATCAAAAATTTTCACCACCACCCCTCAGACAATGCTaGGCAGAGCCCGGGGTGTGT | + |
|
Preference number: 2 (lower is better) Translates to: EIHLPLPPECWDQKFSPPPLRQC*AEPGVC Trigger: ACACACCCCGGGCTCTGCTCAGCATTGTCTGAGGGG...TGGTGGTGAAAATTTTTGATCCCAGCATTCTGGAGGCAGAGGCAGGTGGATCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | TCTGCACAGACGGCCAGCTCCTGTTCACTTAGTGACCCCTCACCCATCCTCCGTGGGGAGTCTGGTCAGTaGATAGAAATAGAACCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: SAQTASSCSLSDPSPILRGESGQ*IEIEPR Trigger: CCTGGGTTCTATTTCTATTCACTGACCAGACTCCCC...ACGGAGGATGGGTGAGGGGTCACTAAGTGAACAGGAGCTGGCCGTCTGTGCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR GCA 90 bp | CAGGACCCTGTGCAAAACAGTAGGCAAATGCTAGCGAGAGAGCTAGTTCCAGGTGCCCAGAGGCAAGGGTaGCCTGAGCTGAGAGACAGT | + |
|
Preference number: 2 (lower is better) Translates to: QDPVQNSRQMLARELVPGAQRQG*PELRDS Trigger: ACTGTCTCTCAGCTCAGGGCACCCTTGCCTCTGGGC...ACCTGGAACTAGCTCTCTCGCTAGCATTTGCCTACTGTTTTGCACAGGGTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | CCCAAATCCTGTCATAAGAAACTGACCAGCAAGGGCACACCCTCTGTGGGCTGCCTTGTGCAAGAGGAGTaGGAAGTGGCCCAGAGGCAA | + |
|
Preference number: 2 (lower is better) Translates to: PKSCHKKLTSKGTPSVGCLVQEE*EVAQRQ Trigger: TTGCCTCTGGGCCACTTCCCACTCCTCTTGCACAAG...GCAGCCCACAGAGGGTGTGCCCTTGCTGGTCAGTTTCTTATGACAGGATTTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | AAGGACTCCTGCTCCCATGACGGACTGGGTTGCCCACTAGTGCCTTCCCCCAGTTTAACCCACACTGAGTaGATAGACTCAGGGGAAGCT | + |
|
Preference number: 2 (lower is better) Translates to: KDSCSHDGLGCPLVPSPSLTHTE*IDSGEA Trigger: AGCTTCCCCTGAGTCTATCCACTCAGTGTGGGTTAA...ACTGGGGGAAGGCACTAGTGGGCAACCCAGTCCGTCATGGGAGCAGGAGTCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | CAGGACCCTGTGCAAAACAGTAGGCAAATGCTAGCGAGAGAGCTAGTTCCAGGTGCTGGACTGCTAGGGTaGGCGATTCTCAGCCCCATG | + |
|
Preference number: 2 (lower is better) Translates to: QDPVQNSRQMLARELVPGAGLLG*AILSPM Trigger: CATGGGGCTGAGAATCGCCCACCCTAGCAGTCCAGC...ACCTGGAACTAGCTCTCTCGCTAGCATTTGCCTACTGTTTTGCACAGGGTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | GAGATCCACCTGCCTCTGCCTCCAGAATGCTGGGATCAAAAATTTTCACCACCACAGCCCCAGTGTCCCTaGGCAACGGCCATGATGCTG | + |
|
Preference number: 2 (lower is better) Translates to: EIHLPLPPECWDQKFSPPQPQCP*ATAMML Trigger: CAGCATCATGGCCGTTGCCCAGGGACACTGGGGCTG...TGGTGGTGAAAATTTTTGATCCCAGCATTCTGGAGGCAGAGGCAGGTGGATCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | CCCAAATCCTGTCATAAGAAACTGACCAGCAAGGGCACACCCTCTGTGGGCTGCCTAAGGCAGAAGGCATaGACATCCCCTCTCTCACTC | + |
|
Preference number: 2 (lower is better) Translates to: PKSCHKKLTSKGTPSVGCLRQKA*TSPLSL Trigger: GAGTGAGAGAGGGGATGTTCATGCCTTCTGCCTTAG...GCAGCCCACAGAGGGTGTGCCCTTGCTGGTCAGTTTCTTATGACAGGATTTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | CTTCTGTTTATAAACCCATCAGGCTCCCGTCCCTCTCGGCCATCTGCACAGACGTCAGTTCCCTGGCTCTaGGGTGAACTGACAGAAAGC | + |
|
Preference number: 2 (lower is better) Translates to: LLFINPSGSRPSRPSAQTSVPWL*GELTES Trigger: GCTTTCTGTCAGTTCACCTCAGAGCCAGGGAACTGA...CGTCTGTGCAGATGGCCGAGAGGGACGGGAGCCTGATGGGTTTATAAACAGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | GTAAAGCTCTTGCCTAAGCCACCACCAGGCAGACAGATGGGAGCCTGGGCAGGCCTGAGCATTCTGACATaGAGAGAAAGGGACATGAAC | + |
|
Preference number: 2 (lower is better) Translates to: VKLLPKPPPGRQMGAWAGLSILT*RERDMN Trigger: GTTCATGTCCCTTTCTCTCCATGTCAGAATGCTCAG...GCCTGCCCAGGCTCCCATCTGTCTGCCTGGTGGTGGCTTAGGCAAGAGCTTTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | TGGAGCCAGGAGCAGAATCAGCACACGGAAACAGAGACCAGGACGGGGCCAAGGCTGAGCATTCTGACATaGAGAGAAAGGGACATGAAC | + |
|
Preference number: 2 (lower is better) Translates to: WSQEQNQHTETETRTGPRLSILT*RERDMN Trigger: GTTCATGTCCCTTTCTCTCCATGTCAGAATGCTCAG...CCTTGGCCCCGTCCTGGTCTCTGTTTCCGTGTGCTGATTCTGCTCCTGGCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | GTGGGCTGCTTTCTCCACTTCCGTTTCTACACAGGATGTAAGGTTTGTAAAGCTGAGGCAAGGGTGCCCTaGGCTGAGAGACAGTCCCCA | + |
|
Preference number: 2 (lower is better) Translates to: VGCFLHFRFYTGCKVCKAEARVP*AERQSP Trigger: TGGGGACTGTCTCTCAGCTCAGGGCACCCTTGCCTC...AGCTTTACAAACCTTACATCCTGTGTAGAAACGGAAGTGGAGAAAGCAGCCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | GTTTTTCAAAACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTTGCTCTCCCCTCAGACAATGCTaGGCAGAGCCCGGGGTGTGT | + |
|
Preference number: 2 (lower is better) Translates to: VFQNRVSLCSPGYPGTCSPLRQC*AEPGVC Trigger: ACACACCCCGGGCTCTGCTCAGCATTGTCTGAGGGG...AGAGCAAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTTTTGAAAAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | CAGGACCCTGTGCAAAACAGTAGGCAAATGCTAGCGAGAGAGCTAGTTCCAGGTAGAGTCAGGGGTGTGTaGCACAGAGCATCTGTCACC | + |
|
Preference number: 2 (lower is better) Translates to: QDPVQNSRQMLARELVPGRVRGV*HRASVT Trigger: GGTGACAGATGCTCTGTGTCACACACCCCTGACTCT...ACCTGGAACTAGCTCTCTCGCTAGCATTTGCCTACTGTTTTGCACAGGGTCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | CTTCTGTTTATAAACCCATCAGGCTCCCGTCCCTCTCGGCCATCTGCACAGACGCAGACGCGATTTAGTTaGCACAAAACGTCAGGACCG | + |
|
Preference number: 2 (lower is better) Translates to: LLFINPSGSRPSRPSAQTQTRFS*HKTSGP Trigger: CGGTCCTGACGTTTTGTGTCAACTAAATCGCGTCTG...CGTCTGTGCAGATGGCCGAGAGGGACGGGAGCCTGATGGGTTTATAAACAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR GCA 90 bp | CCCAAATCCTGTCATAAGAAACTGACCAGCAAGGGCACACCCTCTGTGGGCTGCAGGGACATGAACTTGTaGAAGAGGAGTGGGAAGTGG | + |
|
Preference number: 2 (lower is better) Translates to: PKSCHKKLTSKGTPSVGCRDMNL*KRSGKW Trigger: CCACTTCCCACTCCTCTTGCACAAGTTCATGTCCCT...GCAGCCCACAGAGGGTGTGCCCTTGCTGGTCAGTTTCTTATGACAGGATTTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | GAGATCCACCTGCCTCTGCCTCCAGAATGCTGGGATCAAAAATTTTCACCACCAAGGGCACACCCTCTGTaGGCTGCTTTCTCCACTTCC | + |
|
Preference number: 2 (lower is better) Translates to: EIHLPLPPECWDQKFSPPRAHPL*AAFSTS Trigger: GGAAGTGGAGAAAGCAGCCCACAGAGGGTGTGCCCT...TGGTGGTGAAAATTTTTGATCCCAGCATTCTGGAGGCAGAGGCAGGTGGATCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | TGGAGCCAGGAGCAGAATCAGCACACGGAAACAGAGACCAGGACGGGGCCAAGGTCAAATCACCTTTCATaGGAGGAAGAAACAAGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: WSQEQNQHTETETRTGPRSNHLS*EEETRR Trigger: CCTCCTTGTTTCTTCCTCCCATGAAAGGTGATTTGA...CCTTGGCCCCGTCCTGGTCTCTGTTTCCGTGTGCTGATTCTGCTCCTGGCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CAA 90 bp | TTCCTGGACTGGAGAACAGGGAGAATAGGCAGTGCCAGACCAGAGTaGATTCACTGTTGCTTCAGAATTGCTAGCGTGGAGCCAGGAGCA | + |
|
Preference number: 2 (lower is better) Translates to: FLDWRTGRIGSARPE*IHCCFRIASVEPGA Trigger: TGCTCCTGGCTCCACGCTAGCAATTCTGAAGCAACAGTGAATCAACTCTGGTCTGGCACTGCCTATTCTCCCTGTTCTCCAGTCCAGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | GTTTTTCAAAACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTTGCTCTGCTGGGAAGGCACTTTaGAGAGTTCCCGGTGCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: VFQNRVSLCSPGYPGTCSAGKAL*RVPGAR Trigger: CCTGGCACCGGGAACTCTCCAAAGTGCCTTCCCAGC...AGAGCAAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTTTTGAAAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | GTTTTTCAAAACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTTGCTCTGCTGGACTGCTAGGGTaGGCGATTCTCAGCCCCATG | + |
|
Preference number: 2 (lower is better) Translates to: VFQNRVSLCSPGYPGTCSAGLLG*AILSPM Trigger: CATGGGGCTGAGAATCGCCCACCCTAGCAGTCCAGC...AGAGCAAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTTTTGAAAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | AGAACAGGGAGAATAGGCAGTGCCAGACCAGAGTTGATTCACTGTTGCTTCAGAAGGGCACACCCTCTGTaGGCTGCTTTCTCCACTTCC | + |
|
Preference number: 2 (lower is better) Translates to: RTGRIGSARPELIHCCFRRAHPL*AAFSTS Trigger: GGAAGTGGAGAAAGCAGCCCACAGAGGGTGTGCCCT...TCTGAAGCAACAGTGAATCAACTCTGGTCTGGCACTGCCTATTCTCCCTGTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | TTCATGGGAGGAAGAAACAAGGAGGTTTCCACATTATTCAGTTTCCACAGTAGGGAGGCAAGGGTGCCCTaGGCTGAGAGACAGTCCCCA | + |
|
Preference number: 2 (lower is better) Translates to: FMGGRNKEVSTLFSFHSREARVP*AERQSP Trigger: TGGGGACTGTCTCTCAGCTCAGGGCACCCTTGCCTC...CCTACTGTGGAAACTGAATAATGTGGAAACCTCCTTGTTTCTTCCTCCCATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | AGAACAGGGAGAATAGGCAGTGCCAGACCAGAGTTGATTCACTGTTGCTTCAGATCAGTTCCCTGGCTCTaGGGTGAACTGACAGAAAGC | + |
|
Preference number: 2 (lower is better) Translates to: RTGRIGSARPELIHCCFRSVPWL*GELTES Trigger: GCTTTCTGTCAGTTCACCTCAGAGCCAGGGAACTGA...TCTGAAGCAACAGTGAATCAACTCTGGTCTGGCACTGCCTATTCTCCCTGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR TCA 90 bp | AGAACAGGGAGAATAGGCAGTGCCAGACCAGAGTTGATTCACTGTTGCTTCAGAGAGGCTAACTACTCCTaGGTCTCCTGCAGAGAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: RTGRIGSARPELIHCCFREANYS*VSCREA Trigger: TGCTTCTCTGCAGGAGACTCAGGAGTAGTTAGCCTC...TCTGAAGCAACAGTGAATCAACTCTGGTCTGGCACTGCCTATTCTCCCTGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR GCA 90 bp | TTCATGGGAGGAAGAAACAAGGAGGTTTCCACATTATTCAGTTTCCACAGTAGGGCAGAGGATGGAGACTaGAGCCCTGCCTGTGTCCTT | + |
|
Preference number: 2 (lower is better) Translates to: FMGGRNKEVSTLFSFHSRAEDGD*SPACVL Trigger: AAGGACACAGGCAGGGCTGCAGTCTCCATCCTCTGC...CCTACTGTGGAAACTGAATAATGTGGAAACCTCCTTGTTTCTTCCTCCCATGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR GCA 90 bp | AGAACAGGGAGAATAGGCAGTGCCAGACCAGAGTTGATTCACTGTTGCTTCAGATCCTTCCAGACTAGCTaGATCATTCTCTCTTGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: RTGRIGSARPELIHCCFRSFQTS*IILSCS Trigger: AGAGCAAGAGAGAATGATGCAGCTAGTCTGGAAGGA...TCTGAAGCAACAGTGAATCAACTCTGGTCTGGCACTGCCTATTCTCCCTGTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | AAAGGTTCAAATCACCTTTCATGGGAGGAAGAAACAAGGAGGTTTCCACATTATCCCTGCCTGTGTCCTTaGCTAGCAGTCAGTTCACAG | + |
|
Preference number: 2 (lower is better) Translates to: KGSNHLSWEEETRRFPHYPCLCP*LAVSSQ Trigger: CTGTGAACTGACTGCTAGCCAAGGACACAGGCAGGG...ATAATGTGGAAACCTCCTTGTTTCTTCCTCCCATGAAAGGTGATTTGAACCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CCA 90 bp | AGAACAGGGAGAATAGGCAGTGCCAGACCAGAGTTGATTCACTGTTGCTTCAGAGTGTTTAGGGGAGTCTaGTCAGTGAATAGAAATAGA | + |
|
Preference number: 2 (lower is better) Translates to: RTGRIGSARPELIHCCFRVFRGV*SVNRNR Trigger: TCTATTTCTATTCACTGACCAGACTCCCCTAAACAC...TCTGAAGCAACAGTGAATCAACTCTGGTCTGGCACTGCCTATTCTCCCTGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR TCA 72 bp | GGCAGGCGGCCTCAGTTCCCTGGCTCTGAGGTGAACTaGCAGAAAGCTGGACTGCTAGGGTGGGCGATTCTC | + |
|
Preference number: 3 (lower is better) Translates to: GRRPQFPGSEVN*QKAGLLGWAIL Trigger: GAGAATCGCCCACCCTAGCAGTCCAGCTTTCTGTCAGTTCACCTCAGAGCCAGGGAACTGAGGCCGCCTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR GCA 72 bp | GTGCAAGAGGAGTGGGAAGTGGCCCAGAGGCAAGGGTaGCCTGAGCTGAGAGACAGTCCCCATAGCTCACAC | + |
|
Preference number: 3 (lower is better) Translates to: VQEEWEVAQRQG*PELRDSPHSSH Trigger: GTGTGAGCTATGGGGACTGTCTCTCAGCTCAGGGCACCCTTGCCTCTGGGCCACTTCCCACTCCTCTTGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGAGCCAGGAGCAGAATCAGCACACGGAAACAGAGACCAGGACGGGGCCAAGGAGGTTTGTAAAGCTCTaGCCTAAGCCACCACCAGGC | + |
|
Preference number: 3 (lower is better) Translates to: WSQEQNQHTETETRTGPRRFVKL*PKPPPG Trigger: GCCTGGTGGTGGCTTAGGCAAGAGCTTTACAAACCT...CCTTGGCCCCGTCCTGGTCTCTGTTTCCGTGTGCTGATTCTGCTCCTGGCTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CAA 90 bp | CTGTGCACACACCCTTGCTCACCGTGGAGGGGAGATGGTGGCTTAAAGGGCTCAGAGCACGTGCCTAGTTaGTGCAGTGCTGGGTCTTCA | + |
|
Preference number: 3 (lower is better) Translates to: LCTHPCSPWRGDGGLKGSEHVPS*CSAGSS Trigger: TGAAGACCCAGCACTGCACAAACTAGGCACGTGCTC...TGAGCCCTTTAAGCCACCATCTCCCCTCCACGGTGAGCAAGGGTGTGTGCACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | GAGTGGATAGACTCAGGGGAAGCTGGGAAGGCACTTTaGAGAGTTCCCGGTGCCAGGGGTAGCTCCAACTCT | + |
|
Preference number: 3 (lower is better) Translates to: EWIDSGEAGKAL*RVPGARGSSNS Trigger: AGAGTTGGAGCTACCCCTGGCACCGGGAACTCTCCAAAGTGCCTTCCCAGCTTCCCCTGAGTCTATCCACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | GCCACTCCTCCCTGGGAGGACAGGGGGATAAAGCTCTaGAGGCTAACTACTCCTGAGTCTCCTGCAGAGAAG | + |
|
Preference number: 3 (lower is better) Translates to: ATPPWEDRGIKL*RLTTPESPAEK Trigger: CTTCTCTGCAGGAGACTCAGGAGTAGTTAGCCTCCAGAGCTTTATCCCCCTGTCCTCCCAGGGAGGAGTGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CAA 90 bp | GTAAAGCTCTTGCCTAAGCCACCACCAGGCAGACAGATGGGAGCCTGGGCAGGCGAAAGGGACATGAACTaGTGCAAGAGGAGTGGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: VKLLPKPPPGRQMGAWAGERDMN*CKRSGK Trigger: CTTCCCACTCCTCTTGCACAAGTTCATGTCCCTTTC...GCCTGCCCAGGCTCCCATCTGTCTGCCTGGTGGTGGCTTAGGCAAGAGCTTTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | CCTGAGTCTCCTGCAGAGAAGCATTCCCCATGCCCATaGCTTCTGTTTATAAACCCATCAGGCTCCCGTCCC | + |
|
Preference number: 3 (lower is better) Translates to: PESPAEKHSPCP*LLFINPSGSRP Trigger: GGGACGGGAGCCTGATGGGTTTATAAACAGAAGCCATGGGCATGGGGAATGCTTCTCTGCAGGAGACTCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR TCA 72 bp | GTTCACAGGCAGGTTTCAAGGCCAAACTGGTGGACCTaGGATAGAGAGGCTGCCAGGACTAAGTTGGACAGC | + |
|
Preference number: 3 (lower is better) Translates to: VHRQVSRPNWWT*DREAARTKLDS Trigger: GCTGTCCAACTTAGTCCTGGCAGCCTCTCTATCTCAGGTCCACCAGTTTGGCCTTGAAACCTGCCTGTGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | TGGATCCCGAGGTCTAACTCAGGTCATCAGGCTTGGTaGCAGTGTCTTCAGATGAGCCATTCCACCAGCCAA | + |
|
Preference number: 3 (lower is better) Translates to: WIPRSNSGHQAW*QCLQMSHSTSQ Trigger: TTGGCTGGTGGAATGGCTCATCTGAAGACACTGCCACCAAGCCTGATGACCTGAGTTAGACCTCGGGATCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | TCATGGATCCCGAGGTCTAACTCAGGTCATCAGGCTTaGTGGCAGTGTCTTCAGATGAGCCATTCCACCAGC | + |
|
Preference number: 3 (lower is better) Translates to: SWIPRSNSGHQA*WQCLQMSHSTS Trigger: GCTGGTGGAATGGCTCATCTGAAGACACTGCCACCAAGCCTGATGACCTGAGTTAGACCTCGGGATCCATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR TCA 72 bp | GACTCCAAACTTCCGATCCTCCTGCCTCTACTAGAATaGCATCCCTGGAGCACGTGCCTAGTTTGTGCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: DSKLPILLPLLE*HPWSTCLVCAV Trigger: CACTGCACAAACTAGGCACGTGCTCCAGGGATGTCATTCTAGTAGAGGCAGGAGGATCGGAAGTTTGGAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115351.10 ENSMUST00000119055.8 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CAA 90 bp | CAGGACCCTGTGCAAAACAGTAGGCAAATGCTAGCGAGAGAGCTAGTTCCAGGTGAAAGGGACATGAACTaGTGCAAGAGGAGTGGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: QDPVQNSRQMLARELVPGERDMN*CKRSGK Trigger: CTTCCCACTCCTCTTGCACAAGTTCATGTCCCTTTC...ACCTGGAACTAGCTCTCTCGCTAGCATTTGCCTACTGTTTTGCACAGGGTCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR-3UTR CAA 90 bp | GAGATCCACCTGCCTCTGCCTCCAGAATGCTGGGATCAAAAATTTTCACCACCAAGGTTTGTAAAGCTCTaGCCTAAGCCACCACCAGGC | + |
|
Preference number: 3 (lower is better) Translates to: EIHLPLPPECWDQKFSPPRFVKL*PKPPPG Trigger: GCCTGGTGGTGGCTTAGGCAAGAGCTTTACAAACCT...TGGTGGTGAAAATTTTTGATCCCAGCATTCTGGAGGCAGAGGCAGGTGGATCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR GCA 72 bp | AAGAAACTGACCAGCAAGGGCACACCCTCTGTGGGCTaGTTTCTCCACTTCCGTTTCTACACAGGATGTAAG | + |
|
Preference number: 3 (lower is better) Translates to: KKLTSKGTPSVG*FLHFRFYTGCK Trigger: CTTACATCCTGTGTAGAAACGGAAGTGGAGAAAGCAGCCCACAGAGGGTGTGCCCTTGCTGGTCAGTTTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR GCA 72 bp | TCAGGCTGGTCTCGAACTCAGAGATCCACCTGCCTCTaGCTCCAGAATGCTGGGATCAAAAATTTTCACCAC | + |
|
Preference number: 3 (lower is better) Translates to: SGWSRTQRSTCL*LQNAGIKNFHH Trigger: GTGGTGAAAATTTTTGATCCCAGCATTCTGGAGGCAGAGGCAGGTGGATCTCTGAGTTCGAGACCAGCCTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR GCA 72 bp | ACTACTCCTGAGTCTCCTGCAGAGAAGCATTCCCCATaGCCATGGCTTCTGTTTATAAACCCATCAGGCTCC | + |
|
Preference number: 3 (lower is better) Translates to: TTPESPAEKHSP*PWLLFINPSGS Trigger: GGAGCCTGATGGGTTTATAAACAGAAGCCATGGGCATGGGGAATGCTTCTCTGCAGGAGACTCAGGAGTAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | GTGGGCTCTAACCAGGAGTGTCTGAGCATTCTGACATaGAGAGAAAGGGACATGAACTTGTGCAAGAGGAGT | + |
|
Preference number: 3 (lower is better) Translates to: VGSNQECLSILT*RERDMNLCKRS Trigger: ACTCCTCTTGCACAAGTTCATGTCCCTTTCTCTCCATGTCAGAATGCTCAGACACTCCTGGTTAGAGCCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | CCCAGTTGTAAGAAAACCACAGGGTGGCTTCCTCTGTaGGTGTTCAGAGTAGAAGTGAAGGAGCCTCTTCTA | + |
|
Preference number: 3 (lower is better) Translates to: PSCKKTTGWLPL*VFRVEVKEPLL Trigger: TAGAAGAGGCTCCTTCACTTCTACTCTGAACACCCACAGAGGAAGCCACCCTGTGGTTTTCTTACAACTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | AAATTTAATTCTGGGAGTAGATTAACCCACACTGAGTaGATAGACTCAGGGGAAGCTGGGAAGGCACTTTGG | + |
|
Preference number: 3 (lower is better) Translates to: KFNSGSRLTHTE*IDSGEAGKALW Trigger: CCAAAGTGCCTTCCCAGCTTCCCCTGAGTCTATCCACTCAGTGTGGGTTAATCTACTCCCAGAATTAAATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | TGGACCATGAAATGTCAGATAGTGTTTAGGGGAGTCTaGTCAGTGAATAGAAATAGAACCCAGGGTCCTAGG | + |
|
Preference number: 3 (lower is better) Translates to: WTMKCQIVFRGV*SVNRNRTQGPR Trigger: CCTAGGACCCTGGGTTCTATTTCTATTCACTGACCAGACTCCCCTAAACACTATCTGACATTTCATGGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CCA 72 bp | CTAATGGAAGAATCAAAAGGTTCAAATCACCTTTCATaGGAGGAAGAAACAAGGAGGTTTCCACATTATTCA | + |
|
Preference number: 3 (lower is better) Translates to: LMEESKGSNHLS*EEETRRFPHYS Trigger: TGAATAATGTGGAAACCTCCTTGTTTCTTCCTCCCATGAAAGGTGATTTGAACCTTTTGATTCTTCCATTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | GTAAAGCTCTTGCCTAAGCCACCACCAGGCAGACAGATGGGAGCCTGGGCAGGCTGCGTAGCCCAGTCCTaGACCGCGGTGAAGGACTCC | + |
|
Preference number: 4 (lower is better) Translates to: VKLLPKPPPGRQMGAWAGCVAQS*TAVKDS Trigger: GGAGTCCTTCACCGCGGTGCAGGACTGGGCTACGCA...GCCTGCCCAGGCTCCCATCTGTCTGCCTGGTGGTGGCTTAGGCAAGAGCTTTAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CCA 90 bp | AATGCTGAGCAGAGCCCGGGGTGTGTGGGCTCTAACCAGGAGTGTCTGAGCATTGCTCGGCTGTGGGGGTaGGGTATCCCCAAGGGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: NAEQSPGCVGSNQECLSIARLWG*GIPKGW Trigger: CCAGCCCTTGGGGATACCCCACCCCCACAGCCGAGC...AATGCTCAGACACTCCTGGTTAGAGCCCACACACCCCGGGCTCTGCTCAGCATT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CAA 72 bp | CGACTCTGCTTGGGAATGGACTGGTCCATAGAGTCTTaGACAGGCCTTCCTCCCACCCCCGCCCCGTGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: RLCLGMDWSIES*TGLPPTPAPCQ Trigger: CTGACACGGGGCGGGGGTGGGAGGAAGGCCTGTCAAAGACTCTATGGACCAGTCCATTCCCAAGCAGAGTCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR TCA 90 bp | CTGTGCACACACCCTTGCTCACCGTGGAGGGGAGATGGTGGCTTAAAGGGCTCATCACGAAGGCAGGGGTaGAGGAGTCATCGGCATAGC | + |
|
Preference number: 4 (lower is better) Translates to: LCTHPCSPWRGDGGLKGSSRRQG*RSHRHS Trigger: GCTATGCCGATGACTCCTTCACCCCTGCCTTCGTGA...TGAGCCCTTTAAGCCACCATCTCCCCTCCACGGTGAGCAAGGGTGTGTGCACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | TCTGCACAGACGGCCAGCTCCTGTTCACTTAGTGACCCCTCACCCATCCTCCGTGGCCTTTTCCATTGCTaGCTGGGCTGGAGCTGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: SAQTASSCSLSDPSPILRGLFHC*LGWSWV Trigger: AACCCAGCTCCAGCCCAGGCAGCAATGGAAAAGGCC...ACGGAGGATGGGTGAGGGGTCACTAAGTGAACAGGAGCTGGCCGTCTGTGCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CCA 90 bp | TGGAGCCAGGAGCAGAATCAGCACACGGAAACAGAGACCAGGACGGGGCCAAGGTTTTCCATTGCTGCCTaGGCTGGAGCTGGGTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: WSQEQNQHTETETRTGPRFSIAA*AGAGFQ Trigger: CTGGAACCCAGCTCCAGCCCAGGCAGCAATGGAAAA...CCTTGGCCCCGTCCTGGTCTCTGTTTCCGTGTGCTGATTCTGCTCCTGGCTCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR TCA 90 bp | AATGCTGAGCAGAGCCCGGGGTGTGTGGGCTCTAACCAGGAGTGTCTGAGCATTGATAGTAGGCCGTGGTaGTTGTCCGGTAGCGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: NAEQSPGCVGSNQECLSIDSRPW*LSGSAP Trigger: AGGAGCGCTACCGGACAATCACCACGGCCTACTATC...AATGCTCAGACACTCCTGGTTAGAGCCCACACACCCCGGGCTCTGCTCAGCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR TCA 90 bp | GTGCCTAGTTTGTGCAGTGCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTTCACGAAGGCAGGGGTaGAGGAGTCATCGGCATAGC | + |
|
Preference number: 4 (lower is better) Translates to: VPSLCSAGSSSQDPVQNSSRRQG*RSHRHS Trigger: GCTATGCCGATGACTCCTTCACCCCTGCCTTCGTGA...ACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGCACTGCACAAACTAGGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000115351.10 ENSMUST00000119055.8 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | CTTCTGTTTATAAACCCATCAGGCTCCCGTCCCTCTCGGCCATCTGCACAGACGACAGGAAGGATGTCTTaGCCACGCTGCTGTTCCCGA | + |
|
Preference number: 4 (lower is better) Translates to: LLFINPSGSRPSRPSAQTTGRMS*PRCCSR Trigger: TCGGGAACAGCAGCGTGGGCAAGACATCCTTCCTGT...CGTCTGTGCAGATGGCCGAGAGGGACGGGAGCCTGATGGGTTTATAAACAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | TGGAGCCAGGAGCAGAATCAGCACACGGAAACAGAGACCAGGACGGGGCCAAGGAGGCGCTCGAACACCTaGTTCACATTGATATTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: WSQEQNQHTETETRTGPRRRSNT*FTLIFS Trigger: GGAGAATATCAATGTGAAGCAGGTGTTCGAGCGCCT...CCTTGGCCCCGTCCTGGTCTCTGTTTCCGTGTGCTGATTCTGCTCCTGGCTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | TTGTGCAGTGCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTAGGCAAATGTGTGTAGCCCAGTCCTaGACCGCGGTGAAGGACTCC | + |
|
Preference number: 4 (lower is better) Translates to: LCSAGSSSQDPVQNSRQMCVAQS*TAVKDS Trigger: GGAGTCCTTCACCGCGGTGCAGGACTGGGCTACACA...CATTTGCCTACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGCACTGCACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119055.8 |
||
| CDS-3UTR CCA 90 bp | GCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTAGGCAAATGCTAGCGAGAGGTATCCCCAAGGGCTaGGCCTTTTCCATTGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: AGSSSQDPVQNSRQMLARGIPKG*AFSIAA Trigger: GGCAGCAATGGAAAAGGCCCAGCCCTTGGGGATACC...TCTCGCTAGCATTTGCCTACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR TCA 90 bp | TTGTGCAGTGCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTAGGCAAATGGATAGTAGGCCGTGGTaGTTGTCCGGTAGCGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LCSAGSSSQDPVQNSRQMDSRPW*LSGSAP Trigger: AGGAGCGCTACCGGACAATCACCACGGCCTACTATC...CATTTGCCTACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGCACTGCACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115351.10 ENSMUST00000119055.8 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | CCCAAATCCTGTCATAAGAAACTGACCAGCAAGGGCACACCCTCTGTGGGCTGCATGTCTTGCCCACGCTaGTGTTCCCGATCAAGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PKSCHKKLTSKGTPSVGCMSCPR*CSRSRA Trigger: TGCTCTTGATCGGGAACAGCAGCGTGGGCAAGACAT...GCAGCCCACAGAGGGTGTGCCCTTGCTGGTCAGTTTCTTATGACAGGATTTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | AGAACAGGGAGAATAGGCAGTGCCAGACCAGAGTTGATTCACTGTTGCTTCAGATGCGTAGCCCAGTCCTaGACCGCGGTGAAGGACTCC | + |
|
Preference number: 4 (lower is better) Translates to: RTGRIGSARPELIHCCFRCVAQS*TAVKDS Trigger: GGAGTCCTTCACCGCGGTGCAGGACTGGGCTACGCA...TCTGAAGCAACAGTGAATCAACTCTGGTCTGGCACTGCCTATTCTCCCTGTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | TTGTGCAGTGCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTAGGCAAATGGGCCTTTTCCATTGCTaGCTGGGCTGGAGCTGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: LCSAGSSSQDPVQNSRQMGLFHC*LGWSWV Trigger: AACCCAGCTCCAGCCCAGGCAGCAATGGAAAAGGCC...CATTTGCCTACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGCACTGCACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CCA 90 bp | CAGGACCCTGTGCAAAACAGTAGGCAAATGCTAGCGAGAGAGCTAGTTCCAGGTGGTATCCCCAAGGGCTaGGCCTTTTCCATTGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: QDPVQNSRQMLARELVPGGIPKG*AFSIAA Trigger: GGCAGCAATGGAAAAGGCCCAGCCCTTGGGGATACC...ACCTGGAACTAGCTCTCTCGCTAGCATTTGCCTACTGTTTTGCACAGGGTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | CTAGTTTGTGCAGTGCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTAGGCATGTCTTGCCCACGCTaGTGTTCCCGATCAAGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LVCAVLGLQARTLCKTVGMSCPR*CSRSRA Trigger: TGCTCTTGATCGGGAACAGCAGCGTGGGCAAGACAT...GCCTACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGCACTGCACAAACTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115351.10 ENSMUST00000119055.8 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | TTGTGCAGTGCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTAGGCAAATGACAGGAAGGATGTCTTaGCCACGCTGCTGTTCCCGA | + |
|
Preference number: 4 (lower is better) Translates to: LCSAGSSSQDPVQNSRQMTGRMS*PRCCSR Trigger: TCGGGAACAGCAGCGTGGGCAAGACATCCTTCCTGT...CATTTGCCTACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGCACTGCACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115351.10 ENSMUST00000119055.8 ENSMUST00000122211.8 |
||
| 3UTR CAA 72 bp | CTGAGCATTCTGACATGGAGAGAAAGGGACATGAACTaGTGCAAGAGGAGTGGGAAGTGGCCCAGAGGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: LSILTWRERDMN*CKRSGKWPRGK Trigger: CTTGCCTCTGGGCCACTTCCCACTCCTCTTGCACAAGTTCATGTCCCTTTCTCTCCATGTCAGAATGCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR TCA 90 bp | GTGGGCTGCTTTCTCCACTTCCGTTTCTACACAGGATGTAAGGTTTGTAAAGCTGATAGTAGGCCGTGGTaGTTGTCCGGTAGCGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: VGCFLHFRFYTGCKVCKADSRPW*LSGSAP Trigger: AGGAGCGCTACCGGACAATCACCACGGCCTACTATC...AGCTTTACAAACCTTACATCCTGTGTAGAAACGGAAGTGGAGAAAGCAGCCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CAA 72 bp | TCCGTTTCTACACAGGATGTAAGGTTTGTAAAGCTCTaGCCTAAGCCACCACCAGGCAGACAGATGGGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SVSTQDVRFVKL*PKPPPGRQMGA Trigger: GGCTCCCATCTGTCTGCCTGGTGGTGGCTTAGGCAAGAGCTTTACAAACCTTACATCCTGTGTAGAAACGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | CAGGACCCTGTGCAAAACAGTAGGCAAATGCTAGCGAGAGAGCTAGTTCCAGGTAGGCGCTCGAACACCTaGTTCACATTGATATTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: QDPVQNSRQMLARELVPGRRSNT*FTLIFS Trigger: GGAGAATATCAATGTGAAGCAGGTGTTCGAGCGCCT...ACCTGGAACTAGCTCTCTCGCTAGCATTTGCCTACTGTTTTGCACAGGGTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| 3UTR CAA 72 bp | TGGAGAACAGGGAGAATAGGCAGTGCCAGACCAGAGTaGATTCACTGTTGCTTCAGAATTGCTAGCGTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: WRTGRIGSARPE*IHCCFRIASVE Trigger: CTCCACGCTAGCAATTCTGAAGCAACAGTGAATCAACTCTGGTCTGGCACTGCCTATTCTCCCTGTTCTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR GCA 90 bp | GTGGGCTGCTTTCTCCACTTCCGTTTCTACACAGGATGTAAGGTTTGTAAAGCTATGTCTTGCCCACGCTaGTGTTCCCGATCAAGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: VGCFLHFRFYTGCKVCKAMSCPR*CSRSRA Trigger: TGCTCTTGATCGGGAACAGCAGCGTGGGCAAGACAT...AGCTTTACAAACCTTACATCCTGTGTAGAAACGGAAGTGGAGAAAGCAGCCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CCA 90 bp | TTCATGGGAGGAAGAAACAAGGAGGTTTCCACATTATTCAGTTTCCACAGTAGGTTTTCCATTGCTGCCTaGGCTGGAGCTGGGTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: FMGGRNKEVSTLFSFHSRFSIAA*AGAGFQ Trigger: CTGGAACCCAGCTCCAGCCCAGGCAGCAATGGAAAA...CCTACTGTGGAAACTGAATAATGTGGAAACCTCCTTGTTTCTTCCTCCCATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | AAGGACTCCTGCTCCCATGACGGACTGGGTTGCCCACTAGTGCCTTCCCCCAGTGGTCAGCAGCGTCTCTaGGGCTGGCAGGGGGCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: KDSCSHDGLGCPLVPSPSGQQRL*GWQGAH Trigger: GTGAGCCCCCTGCCAGCCCAAGAGACGCTGCTGACC...ACTGGGGGAAGGCACTAGTGGGCAACCCAGTCCGTCATGGGAGCAGGAGTCCTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | GTAAAGCTCTTGCCTAAGCCACCACCAGGCAGACAGATGGGAGCCTGGGCAGGCGCTGGGCCTTTTCCATaGCTGCCTGGGCTGGAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: VKLLPKPPPGRQMGAWAGAGPFP*LPGLEL Trigger: CAGCTCCAGCCCAGGCAGCAATGGAAAAGGCCCAGC...GCCTGCCCAGGCTCCCATCTGTCTGCCTGGTGGTGGCTTAGGCAAGAGCTTTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | TTGTGCAGTGCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTAGGCAAATGGGTCAGCAGCGTCTCTaGGGCTGGCAGGGGGCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: LCSAGSSSQDPVQNSRQMGQQRL*GWQGAH Trigger: GTGAGCCCCCTGCCAGCCCAAGAGACGCTGCTGACC...CATTTGCCTACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGCACTGCACAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000115351.10 ENSMUST00000119055.8 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | AGCACGTGCCTAGTTTGTGCAGTGCTGGGTCTTCAAGCCAGGACCCTGTGCAAAGCTGGGCCTTTTCCATaGCTGCCTGGGCTGGAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: STCLVCAVLGLQARTLCKAGPFP*LPGLEL Trigger: CAGCTCCAGCCCAGGCAGCAATGGAAAAGGCCCAGC...TTTGCACAGGGTCCTGGCTTGAAGACCCAGCACTGCACAAACTAGGCACGTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | TGGAGCCAGGAGCAGAATCAGCACACGGAAACAGAGACCAGGACGGGGCCAAGGTCTTCCAGGTCACACTaGTTCCCCACGAGGATTACC | + |
|
Preference number: 5 (lower is better) Translates to: WSQEQNQHTETETRTGPRSSRSH*FPTRIT Trigger: GGTAATCCTCGTGGGGAACAAGTGTGACCTGGAAGA...CCTTGGCCCCGTCCTGGTCTCTGTTTCCGTGTGCTGATTCTGCTCCTGGCTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | GTTTTTCAAAACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTTGCTCTGGTCAGCAGCGTCTCTaGGGCTGGCAGGGGGCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: VFQNRVSLCSPGYPGTCSGQQRL*GWQGAH Trigger: GTGAGCCCCCTGCCAGCCCAAGAGACGCTGCTGACC...AGAGCAAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTTTTGAAAAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | AGCCCATCCCTAATTCACAGGAAGGACTCCTGCTCCCATGACGGACTGGGTTGCTCTTCCAGGTCACACTaGTTCCCCACGAGGATTACC | + |
|
Preference number: 5 (lower is better) Translates to: SPSLIHRKDSCSHDGLGCSSRSH*FPTRIT Trigger: GGTAATCCTCGTGGGGAACAAGTGTGACCTGGAAGA...GCAACCCAGTCCGTCATGGGAGCAGGAGTCCTTCCTGTGAATTAGGGATGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | GCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTAGGCAAATGCTAGCGAGAACATTGATATTCTCCTaGGCGCTGGCCTCAAAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: AGSSSQDPVQNSRQMLARTLIFS*ALASKN Trigger: GTTCTTTGAGGCCAGCGCCAAGGAGAATATCAATGT...TCTCGCTAGCATTTGCCTACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | AGCACGTGCCTAGTTTGTGCAGTGCTGGGTCTTCAAGCCAGGACCCTGTGCAAAAGGGATTCATTCATCTaGTCACAGATGATGTCCACC | + |
|
Preference number: 5 (lower is better) Translates to: STCLVCAVLGLQARTLCKRDSFI*SQMMST Trigger: GGTGGACATCATCTGTGACAAGATGAATGAATCCCT...TTTGCACAGGGTCCTGGCTTGAAGACCCAGCACTGCACAAACTAGGCACGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | GCTGGGTCTTCAAGCCAGGACCCTGTGCAAAACAGTAGGCAAATGCTAGCGAGAAGGGATTCATTCATCTaGTCACAGATGATGTCCACC | + |
|
Preference number: 5 (lower is better) Translates to: AGSSSQDPVQNSRQMLARRDSFI*SQMMST Trigger: GGTGGACATCATCTGTGACAAGATGAATGAATCCCT...TCTCGCTAGCATTTGCCTACTGTTTTGCACAGGGTCCTGGCTTGAAGACCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS-3UTR CAA 90 bp | GTTTTTCAAAACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTTGCTCTACATTGATATTCTCCTaGGCGCTGGCCTCAAAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: VFQNRVSLCSPGYPGTCSTLIFS*ALASKN Trigger: GTTCTTTGAGGCCAGCGCCAAGGAGAATATCAATGT...AGAGCAAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTTTTGAAAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS CCA 72 bp | CCCCAAGGGCTGGGCCTTTTCCATTGCTGCCTGGGCTaGAGCTGGGTTCCAGGGATTCATTCATCTTGTCAC | + |
|
Preference number: 6 (lower is better) Translates to: PQGLGLFHCCLG*SWVPGIHSSCH Trigger: GTGACAAGATGAATGAATCCCTGGAACCCAGCTCCAGCCCAGGCAGCAATGGAAAAGGCCCAGCCCTTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS CCA 72 bp | GGTATCCCCAAGGGCTGGGCCTTTTCCATTGCTGCCTaGGCTGGAGCTGGGTTCCAGGGATTCATTCATCTT | + |
|
Preference number: 6 (lower is better) Translates to: GIPKGWAFSIAA*AGAGFQGFIHL Trigger: AAGATGAATGAATCCCTGGAACCCAGCTCCAGCCCAGGCAGCAATGGAAAAGGCCCAGCCCTTGGGGATACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115351.10 ENSMUST00000122211.8 |
||
| CDS GCA 72 bp | TTTTTCAAAACAGGGTTTCTCTGTGTAGCCCAGTCCTaGACCGCGGTGAAGGACTCCTGGTTGGCGATGTCA | + |
|
Preference number: 6 (lower is better) Translates to: FFKTGFLCVAQS*TAVKDSWLAMS Trigger: TGACATCGCCAACCAGGAGTCCTTCACCGCGGTGCAGGACTGGGCTACACAGAGAAACCCTGTTTTGAAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119055.8 |
||