Pregenerated sensors for RAB3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031840Ensembl transcript IDs: ENSMUST00000034301.12, ENSMUST00000110090.8, ENSMUST00000110092.6, ENSMUST00000110093.9
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCAGGGGCTGGGCCAGCAGACTCAGCAAGGTCCATTCGCTTTATTaGCTGTGTGTAGTGTTCATAACTTCTAGGGAGGAGTGGGACACA | + |
|
Preference number: 1 (lower is better) Translates to: FRGWASRLSKVHSLY*LCVVFITSREEWDT Trigger: TGTGTCCCACTCCTCCCTAGAAGTTATGAACACTACACACAGTCAATAAAGCGAATGGACCTTGCTGAGTCTGCTGGCCCAGCCCCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR GCA 90 bp | AGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGGCGATCCCCCAGCCTCGGCGGGGATGGGGGACGTaGCCCTGGCAGCAGGGAAGG | + |
|
Preference number: 2 (lower is better) Translates to: SKKPSVNQVVHMAIPQPRRGWGT*PWQQGR Trigger: CCTTCCCTGCTGCCAGGGGCACGTCCCCCATCCCCG...CCGAGGCTGGGGGATCGCCATATGGACCACCTGGTTGACAGACGGCTTCTTGCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR CCA 90 bp | AGGCAGAAGGCCCAGGCAAGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGTGGGGGACGTGCCCCTaGCAGCAGGGAAGGGAAGTG | + |
|
Preference number: 2 (lower is better) Translates to: RQKAQASKKPSVNQVVHMWGTCP*QQGREV Trigger: CACTTCCCTTCCCTGCTGCCAGGGGCACGTCCCCCA...CATATGGACCACCTGGTTGACAGACGGCTTCTTGCTTGCCTGGGCCTTCTGCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR CCA 90 bp | GAAGGCCCAGGCAAGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGGCGATTGGGGGACGTGCCCCTaGCAGCAGGGAAGGGAAGTG | + |
|
Preference number: 2 (lower is better) Translates to: EGPGKQEAVCQPGGPYGDWGTCP*QQGREV Trigger: CACTTCCCTTCCCTGCTGCCAGGGGCACGTCCCCCA...ATCGCCATATGGACCACCTGGTTGACAGACGGCTTCTTGCTTGCCTGGGCCTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR CCA 90 bp | CTAGGGAGGAGTGGGACACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTGGGGGACGTGCCCCTaGCAGCAGGGAAGGGAAGTG | + |
|
Preference number: 2 (lower is better) Translates to: LGRSGTHLTLTTSEQVWGWGTCP*QQGREV Trigger: CACTTCCCTTCCCTGCTGCCAGGGGCACGTCCCCCA...CCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCCACTCCTCCCTAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR CCA 90 bp | AGGCAGAAGGCCCAGGCAAGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGCACGGCCGAGCTGGGTaGAGCTATGTACAGGGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: RQKAQASKKPSVNQVVHMHGRAG*SYVQGG Trigger: CCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTG...CATATGGACCACCTGGTTGACAGACGGCTTCTTGCTTGCCTGGGCCTTCTGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR TCA 90 bp | TGTGGGTGGGTTCAGGGGCTGGGCCAGCAGACTCAGCAAGGTCCATTCGCTTTACAGCCTGCTGCAGAGTaGCATCTGGTCCCCTCTTCA | + |
|
Preference number: 2 (lower is better) Translates to: CGWVQGLGQQTQQGPFALQPAAE*HLVPSS Trigger: TGAAGAGGGGACCAGATGTCACTCTGCAGCAGGCTG...TAAAGCGAATGGACCTTGCTGAGTCTGCTGGCCCAGCCCCTGAACCCACCCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110093.9 |
||
| 3UTR-3UTR GCA 90 bp | GAGGAGTGGGACACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTATCCAGGGTGGGAAGGGGGTaGGCTCGGGGCACATCCTCA | + |
|
Preference number: 2 (lower is better) Translates to: EEWDTFDTHDVRTGLGVSRVGRG*ARGTSS Trigger: TGAGGATGTGCCCCGAGCGCACCCCCTTCCCACCCT...GGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCCACTCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR CCA 90 bp | GAGGAGTGGGACACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTATCCTGGGGGACGTGCCCCTaGCAGCAGGGAAGGGAAGTG | + |
|
Preference number: 2 (lower is better) Translates to: EEWDTFDTHDVRTGLGVSWGTCP*QQGREV Trigger: CACTTCCCTTCCCTGCTGCCAGGGGCACGTCCCCCA...GGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCCACTCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR TCA 90 bp | AGGCAGAAGGCCCAGGCAAGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGTCCCCTCTTCACAACTaGCAACTGTGGACGGGATGG | + |
|
Preference number: 2 (lower is better) Translates to: RQKAQASKKPSVNQVVHMSPLHN*QLWTGW Trigger: CCATCCCGTCCACAGTTGTCAGTTGTGAAGAGGGGA...CATATGGACCACCTGGTTGACAGACGGCTTCTTGCTTGCCTGGGCCTTCTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR GCA 90 bp | ACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTATCCCAAAGTAGTGAACGGGGATGGGGGACGTaGCCCTGGCAGCAGGGAAGG | + |
|
Preference number: 2 (lower is better) Translates to: TFDTHDVRTGLGVSQSSERGWGT*PWQQGR Trigger: CCTTCCCTGCTGCCAGGGGCACGTCCCCCATCCCCG...TTCACTACTTTGGGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR TCA 90 bp | GAGGAGTGGGACACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTATCCCAGCCTGCTGCAGAGTaGCATCTGGTCCCCTCTTCA | + |
|
Preference number: 2 (lower is better) Translates to: EEWDTFDTHDVRTGLGVSQPAAE*HLVPSS Trigger: TGAAGAGGGGACCAGATGTCACTCTGCAGCAGGCTG...GGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCCACTCCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR GCA 90 bp | CAGCAGACTCAGCAAGGTCCATTCGCTTTATTGACTGTGTGTAGTGTTCATAACCGGGGATGGGGGACGTaGCCCTGGCAGCAGGGAAGG | + |
|
Preference number: 2 (lower is better) Translates to: QQTQQGPFALLTVCSVHNRGWGT*PWQQGR Trigger: CCTTCCCTGCTGCCAGGGGCACGTCCCCCATCCCCG...GTTATGAACACTACACACAGTCAATAAAGCGAATGGACCTTGCTGAGTCTGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR TCA 90 bp | ACACCCCATTTATCCCAAAGTATAAGGCAGAAGGCCCAGGCAAGCAAGAAGCCGCAGCCTGCTGCAGAGTaGCATCTGGTCCCCTCTTCA | + |
|
Preference number: 2 (lower is better) Translates to: TPHLSQSIRQKAQASKKPQPAAE*HLVPSS Trigger: TGAAGAGGGGACCAGATGTCACTCTGCAGCAGGCTG...CGGCTTCTTGCTTGCCTGGGCCTTCTGCCTTATACTTTGGGATAAATGGGGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR GCA 90 bp | ACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTATCCCAAAGTAGTGAAAGGGTGGGAAGGGGGTaGGCTCGGGGCACATCCTCA | + |
|
Preference number: 2 (lower is better) Translates to: TFDTHDVRTGLGVSQSSERVGRG*ARGTSS Trigger: TGAGGATGTGCCCCGAGCGCACCCCCTTCCCACCCT...TTCACTACTTTGGGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR TCA 90 bp | ACACCCCATTTATCCCAAAGTATAAGGCAGAAGGCCCAGGCAAGCAAGAAGCCGTCCCCTCTTCACAACTaGCAACTGTGGACGGGATGG | + |
|
Preference number: 2 (lower is better) Translates to: TPHLSQSIRQKAQASKKPSPLHN*QLWTGW Trigger: CCATCCCGTCCACAGTTGTCAGTTGTGAAGAGGGGA...CGGCTTCTTGCTTGCCTGGGCCTTCTGCCTTATACTTTGGGATAAATGGGGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR GCA 90 bp | ACACCCCATTTATCCCAAAGTATAAGGCAGAAGGCCCAGGCAAGCAAGAAGCCGCTTCCATCAGCCTGCTaGAGAGTGACATCTGGTCCC | + |
|
Preference number: 2 (lower is better) Translates to: TPHLSQSIRQKAQASKKPLPSAC*RVTSGP Trigger: GGGACCAGATGTCACTCTGCAGCAGGCTGATGGAAG...CGGCTTCTTGCTTGCCTGGGCCTTCTGCCTTATACTTTGGGATAAATGGGGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR CCA 90 bp | TCAAGGACTGCGTGTGGGTGGGTTCAGGGGCTGGGCCAGCAGACTCAGCAAGGTCAACTGTGGACGGGATaGTTTACAAAAACAAAATGG | + |
|
Preference number: 2 (lower is better) Translates to: SRTACGWVQGLGQQTQQGQLWTG*FTKTKW Trigger: CCATTTTGTTTTTGTAAACCATCCCGTCCACAGTTG...ACCTTGCTGAGTCTGCTGGCCCAGCCCCTGAACCCACCCACACGCAGTCCTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000110093.9 |
||
| 3UTR-3UTR CCA 90 bp | AGGCAGAAGGCCCAGGCAAGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGCAACTGTGGACGGGATaGTTTACAAAAACAAAATGG | + |
|
Preference number: 2 (lower is better) Translates to: RQKAQASKKPSVNQVVHMQLWTG*FTKTKW Trigger: CCATTTTGTTTTTGTAAACCATCCCGTCCACAGTTG...CATATGGACCACCTGGTTGACAGACGGCTTCTTGCTTGCCTGGGCCTTCTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR-3UTR CCA 90 bp | ACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTATCCCAAAGTAGTGAACAACTGTGGACGGGATaGTTTACAAAAACAAAATGG | + |
|
Preference number: 2 (lower is better) Translates to: TFDTHDVRTGLGVSQSSEQLWTG*FTKTKW Trigger: CCATTTTGTTTTTGTAAACCATCCCGTCCACAGTTG...TTCACTACTTTGGGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR CCA 72 bp | GCAGCAGTGACCACAATACACCACGGCCGAGCTGGGTaGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTCG | + |
|
Preference number: 3 (lower is better) Translates to: AAVTTIHHGRAG*SYVQGGKGVRS Trigger: CGAGCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATTGTGGTCACTGCTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR CCA 72 bp | GGGAGCAGCAGTGACCACAATACACCACGGCCGAGCTaGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCG | + |
|
Preference number: 3 (lower is better) Translates to: GSSSDHNTPRPS*VELCTGWEGGA Trigger: CGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATTGTGGTCACTGCTGCTCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR CCA 72 bp | AGGCCCAGGCAAGCAAGAAGCCGTCTGTCAACCAGGTaGTCCATATGGCGATCCCCCAGCCTCGGGGTTGGC | + |
|
Preference number: 3 (lower is better) Translates to: RPRQARSRLSTR*SIWRSPSLGVG Trigger: GCCAACCCCGAGGCTGGGGGATCGCCATATGGACCACCTGGTTGACAGACGGCTTCTTGCTTGCCTGGGCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR TCA 72 bp | TGGGCCAGCAGACTCAGCAAGGTCCATTCGCTTTATTaGCTGTGTGTAGTGTTCATAACTTCTAGGGAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: WASRLSKVHSLY*LCVVFITSREE Trigger: CTCCTCCCTAGAAGTTATGAACACTACACACAGTCAATAAAGCGAATGGACCTTGCTGAGTCTGCTGGCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR TCA 72 bp | CTGCTGCAGAGTGACATCTGGTCCCCTCTTCACAACTaGCAACTGTGGACGGGATGGTTTACAAAAACAAAA | + |
|
Preference number: 3 (lower is better) Translates to: LLQSDIWSPLHN*QLWTGWFTKTK Trigger: TTTTGTTTTTGTAAACCATCCCGTCCACAGTTGTCAGTTGTGAAGAGGGGACCAGATGTCACTCTGCAGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR CCA 72 bp | GGGACACATTTGACACTCACGACGTCAGAACAGGTTTaGGGGTATCCCAAAGTAGTGAATATATCCCCTACA | + |
|
Preference number: 3 (lower is better) Translates to: GTHLTLTTSEQV*GYPKVVNISPT Trigger: TGTAGGGGATATATTCACTACTTTGGGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | ACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTCGGGGCGCGCCTGCTGGTCGGTaGGCTGCGGGCCCTGCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: TAELGGAMYRVGRGCARGAPAGR*AAGPAW Trigger: CCAAGCAGGGCCCGCAGCTCACCGACCAGCAGGCGC...GCCCCGAGCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | ACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTCGGGGCCTGCCGGCCACGCTCTaGGGACACCACTCGCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: TAELGGAMYRVGRGCARGLPATL*GHHSLI Trigger: GATGAGCGAGTGGTGTCCTCAGAGCGTGGCCGGCAG...GCCCCGAGCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | AGCCGTCTGTCAACCAGGTGGTCCATATGGCGATCCCCCAGCCTCGGGGTTGGCGCGCCTGCTGGTCGGTaGGCTGCGGGCCCTGCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SRLSTRWSIWRSPSLGVGAPAGR*AAGPAW Trigger: CCAAGCAGGGCCCGCAGCTCACCGACCAGCAGGCGC...GCCAACCCCGAGGCTGGGGGATCGCCATATGGACCACCTGGTTGACAGACGGCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR GCA 90 bp | CCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTCGGGGCACATTGCTGGTCGGTGAGCTaGGGGCCCTGCTTGGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: PSWVELCTGWEGGALGAHCWSVS*GPCLAP Trigger: CGGTGCCAAGCAGGGCCCGCAGCTCACCGACCAGCA...ATGTGCCCCGAGCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | GACCACAATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGCGCCTGCTGGTCGGTaGGCTGCGGGCCCTGCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: DHNTPRPSWVELCTGWEGAPAGR*AAGPAW Trigger: CCAAGCAGGGCCCGCAGCTCACCGACCAGCAGGCGC...CCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATTGTGGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR GCA 90 bp | ATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTGCTGGTCGGTGAGCTaGGGGCCCTGCTTGGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: IHHGRAGWSYVQGGKGVRCWSVS*GPCLAP Trigger: CGGTGCCAAGCAGGGCCCGCAGCTCACCGACCAGCA...GCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR CCA 90 bp | ACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTCGGGGCAACTCAAAGCCCAGGTaGTCAGCCAGCTGCCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: TAELGGAMYRVGRGCARGNSKPR*SASCRP Trigger: TGGCCGGCAGCTGGCTGACCACCTGGGCTTTGAGTT...GCCCCGAGCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR GCA 90 bp | AATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGTGCTGGTCGGTGAGCTaGGGGCCCTGCTTGGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: NTPRPSWVELCTGWEGGACWSVS*GPCLAP Trigger: CGGTGCCAAGCAGGGCCCGCAGCTCACCGACCAGCA...CGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | AATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTGCCGGCCACGCTCTaGGGACACCACTCGCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: NTPRPSWVELCTGWEGGALPATL*GHHSLI Trigger: GATGAGCGAGTGGTGTCCTCAGAGCGTGGCCGGCAG...CGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | ATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCCCTGCTTGGCACCGGTaGCCGCAGGGTCTGCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: IHHGRAGWSYVQGGKGVRPAWHR*PQGLQY Trigger: ATACTGCAGACCCTGCGGTCACCGGTGCCAAGCAGG...GCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTAT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | CTAGGGAGGAGTGGGACACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGGCGCCTGCTGGTCGGTaGGCTGCGGGCCCTGCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LGRSGTHLTLTTSEQVWGAPAGR*AAGPAW Trigger: CCAAGCAGGGCCCGCAGCTCACCGACCAGCAGGCGC...CCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCCACTCCTCCCTAG 63% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR GCA 90 bp | ACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTCGGGGCAGAGGAACGAGGTTTTaGCCACGCTGCTGTTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: TAELGGAMYRVGRGCARGRGTRF*PRCCSQ Trigger: TTGGGAACAGCAGCGTGGGCAAAACCTCGTTCCTCT...GCCCCGAGCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | TGTGGGTGGGTTCAGGGGCTGGGCCAGCAGACTCAGCAAGGTCCATTCGCTTTACTGCCGGCCACGCTCTaGGGACACCACTCGCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: CGWVQGLGQQTQQGPFALLPATL*GHHSLI Trigger: GATGAGCGAGTGGTGTCCTCAGAGCGTGGCCGGCAG...TAAAGCGAATGGACCTTGCTGAGTCTGCTGGCCCAGCCCCTGAACCCACCCACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | AGGCAGAAGGCCCAGGCAAGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGCTGCCGGCCACGCTCTaGGGACACCACTCGCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: RQKAQASKKPSVNQVVHMLPATL*GHHSLI Trigger: GATGAGCGAGTGGTGTCCTCAGAGCGTGGCCGGCAG...CATATGGACCACCTGGTTGACAGACGGCTTCTTGCTTGCCTGGGCCTTCTGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | ACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTCGGGGCAGTATCCAGGGACTCTaGCATCTTCTCACAGATCAC | + |
|
Preference number: 4 (lower is better) Translates to: TAELGGAMYRVGRGCARGSIQGL*HLLTDH Trigger: GTGATCTGTGAGAAGATGTCAGAGTCCCTGGATACT...GCCCCGAGCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | AGGCAGAAGGCCCAGGCAAGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGCCTGCTTGGCACCGGTaGCCGCAGGGTCTGCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: RQKAQASKKPSVNQVVHMPAWHR*PQGLQY Trigger: ATACTGCAGACCCTGCGGTCACCGGTGCCAAGCAGG...CATATGGACCACCTGGTTGACAGACGGCTTCTTGCTTGCCTGGGCCTTCTGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR GCA 90 bp | AGCCGTCTGTCAACCAGGTGGTCCATATGGCGATCCCCCAGCCTCGGGGTTGGCAGAGGAACGAGGTTTTaGCCACGCTGCTGTTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: SRLSTRWSIWRSPSLGVGRGTRF*PRCCSQ Trigger: TTGGGAACAGCAGCGTGGGCAAAACCTCGTTCCTCT...GCCAACCCCGAGGCTGGGGGATCGCCATATGGACCACCTGGTTGACAGACGGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR GCA 90 bp | ATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCAGAGGAACGAGGTTTTaGCCACGCTGCTGTTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: IHHGRAGWSYVQGGKGVRRGTRF*PRCCSQ Trigger: TTGGGAACAGCAGCGTGGGCAAAACCTCGTTCCTCT...GCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR GCA 90 bp | CTAGGGAGGAGTGGGACACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGAGGTGGTCAGCCAGCTaGCGGCCACGCTCTGAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: LGRSGTHLTLTTSEQVWGRWSAS*RPRSED Trigger: GTCCTCAGAGCGTGGCCGGCAGCTGGCTGACCACCT...CCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCCACTCCTCCCTAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | CCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCTCGGGGCACATAGTATCCAGGGACTCTaGCATCTTCTCACAGATCAC | + |
|
Preference number: 4 (lower is better) Translates to: PSWVELCTGWEGGALGAHSIQGL*HLLTDH Trigger: GTGATCTGTGAGAAGATGTCAGAGTCCCTGGATACT...ATGTGCCCCGAGCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR GCA 90 bp | ACACCCCATTTATCCCAAAGTATAAGGCAGAAGGCCCAGGCAAGCAAGAAGCCGTGCTGGTCGGTGAGCTaGGGGCCCTGCTTGGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: TPHLSQSIRQKAQASKKPCWSVS*GPCLAP Trigger: CGGTGCCAAGCAGGGCCCGCAGCTCACCGACCAGCA...CGGCTTCTTGCTTGCCTGGGCCTTCTGCCTTATACTTTGGGATAAATGGGGTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR CCA 90 bp | AGGCAGAAGGCCCAGGCAAGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGAACTCAAAGCCCAGGTaGTCAGCCAGCTGCCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RQKAQASKKPSVNQVVHMNSKPR*SASCRP Trigger: TGGCCGGCAGCTGGCTGACCACCTGGGCTTTGAGTT...CATATGGACCACCTGGTTGACAGACGGCTTCTTGCTTGCCTGGGCCTTCTGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | CACAATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGTCGAAGTTCTGGTCTaGGGACTCCTTCTGCCCATA | + |
|
Preference number: 4 (lower is better) Translates to: HNTPRPSWVELCTGWEGGVEVLV*GLLLPI Trigger: TATGGGCAGAAGGAGTCCTCAGACCAGAACTTCGAC...ACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | AGCCGTCTGTCAACCAGGTGGTCCATATGGCGATCCCCCAGCCTCGGGGTTGGCAGTATCCAGGGACTCTaGCATCTTCTCACAGATCAC | + |
|
Preference number: 4 (lower is better) Translates to: SRLSTRWSIWRSPSLGVGSIQGL*HLLTDH Trigger: GTGATCTGTGAGAAGATGTCAGAGTCCCTGGATACT...GCCAACCCCGAGGCTGGGGGATCGCCATATGGACCACCTGGTTGACAGACGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR GCA 90 bp | CACAATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTAGAGGAACGAGGTTTTaGCCACGCTGCTGTTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: HNTPRPSWVELCTGWEGGRGTRF*PRCCSQ Trigger: TTGGGAACAGCAGCGTGGGCAAAACCTCGTTCCTCT...ACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | ATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTGCGCCTGCACTGCATTAAATaGCTCCTCATTGGTGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: IHHGRAGWSYVQGGKGVRLHCIK*LLIGDV Trigger: GACATCACCAATGAGGAGTCATTTAATGCAGTGCAG...GCGCACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | ACACCCCATTTATCCCAAAGTATAAGGCAGAAGGCCCAGGCAAGCAAGAAGCCGCCTGCTTGGCACCGGTaGCCGCAGGGTCTGCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: TPHLSQSIRQKAQASKKPPAWHR*PQGLQY Trigger: ATACTGCAGACCCTGCGGTCACCGGTGCCAAGCAGG...CGGCTTCTTGCTTGCCTGGGCCTTCTGCCTTATACTTTGGGATAAATGGGGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | GACCACAATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGAGTATCCAGGGACTCTaGCATCTTCTCACAGATCAC | + |
|
Preference number: 4 (lower is better) Translates to: DHNTPRPSWVELCTGWEGSIQGL*HLLTDH Trigger: GTGATCTGTGAGAAGATGTCAGAGTCCCTGGATACT...CCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATTGTGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | GGGACACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTATCCCAAAGTACCTGCTTGGCACCGGTaGCCGCAGGGTCTGCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: GTHLTLTTSEQVWGYPKVPAWHR*PQGLQY Trigger: ATACTGCAGACCCTGCGGTCACCGGTGCCAAGCAGG...TACTTTGGGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | AGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGGCGATCCCCCAGCCTCGGCTGCACTGCATTAAATaGCTCCTCATTGGTGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: SKKPSVNQVVHMAIPQPRLHCIK*LLIGDV Trigger: GACATCACCAATGAGGAGTCATTTAATGCAGTGCAG...CCGAGGCTGGGGGATCGCCATATGGACCACCTGGTTGACAGACGGCTTCTTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | TCAGCCTGCTGCAGAGTGACATCTGGTCCCCTCTTCACAACTGACAACTGTGGAGTCGAAGTTCTGGTCTaGGGACTCCTTCTGCCCATA | + |
|
Preference number: 4 (lower is better) Translates to: SACCRVTSGPLFTTDNCGVEVLV*GLLLPI Trigger: TATGGGCAGAAGGAGTCCTCAGACCAGAACTTCGAC...TCCACAGTTGTCAGTTGTGAAGAGGGGACCAGATGTCACTCTGCAGCAGGCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | TCCCCTACACCCCATTTATCCCAAAGTATAAGGCAGAAGGCCCAGGCAAGCAAGGTCGAAGTTCTGGTCTaGGGACTCCTTCTGCCCATA | + |
|
Preference number: 4 (lower is better) Translates to: SPTPHLSQSIRQKAQASKVEVLV*GLLLPI Trigger: TATGGGCAGAAGGAGTCCTCAGACCAGAACTTCGAC...CTTGCTTGCCTGGGCCTTCTGCCTTATACTTTGGGATAAATGGGGTGTAGGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | ACACCCCATTTATCCCAAAGTATAAGGCAGAAGGCCCAGGCAAGCAAGAAGCCGGTCGAAGTTCTGGTCTaGGGACTCCTTCTGCCCATA | + |
|
Preference number: 4 (lower is better) Translates to: TPHLSQSIRQKAQASKKPVEVLV*GLLLPI Trigger: TATGGGCAGAAGGAGTCCTCAGACCAGAACTTCGAC...CGGCTTCTTGCTTGCCTGGGCCTTCTGCCTTATACTTTGGGATAAATGGGGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | GGGACACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTATCCCAAAGTATGTCATACATTAGGATaGAGCCCATGGCGCCTCGGT | + |
|
Preference number: 4 (lower is better) Translates to: GTHLTLTTSEQVWGYPKVCHTLG*SPWRLG Trigger: ACCGAGGCGCCATGGGCTTCATCCTAATGTATGACA...TACTTTGGGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR CCA 90 bp | CAGCAGACTCAGCAAGGTCCATTCGCTTTATTGACTGTGTGTAGTGTTCATAACAACTCAAAGCCCAGGTaGTCAGCCAGCTGCCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: QQTQQGPFALLTVCSVHNNSKPR*SASCRP Trigger: TGGCCGGCAGCTGGCTGACCACCTGGGCTTTGAGTT...GTTATGAACACTACACACAGTCAATAAAGCGAATGGACCTTGCTGAGTCTGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR CCA 90 bp | CAGACTCAGCAAGGTCCATTCGCTTTATTGACTGTGTGTAGTGTTCATAACTTCAACTCAAAGCCCAGGTaGTCAGCCAGCTGCCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: QTQQGPFALLTVCSVHNFNSKPR*SASCRP Trigger: TGGCCGGCAGCTGGCTGACCACCTGGGCTTTGAGTT...GAAGTTATGAACACTACACACAGTCAATAAAGCGAATGGACCTTGCTGAGTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| 3UTR CAA 72 bp | TGGGACACATTTGACACTCACGACGTCAGAACAGGTTaGGGGGTATCCCAAAGTAGTGAATATATCCCCTAC | + |
|
Preference number: 4 (lower is better) Translates to: WDTFDTHDVRTG*GVSQSSEYIPY Trigger: GTAGGGGATATATTCACTACTTTGGGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR TCA 90 bp | CAGACTCAGCAAGGTCCATTCGCTTTATTGACTGTGTGTAGTGTTCATAACTTCCTGCACTGCATTAAATaGCTCCTCATTGGTGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: QTQQGPFALLTVCSVHNFLHCIK*LLIGDV Trigger: GACATCACCAATGAGGAGTCATTTAATGCAGTGCAG...GAAGTTATGAACACTACACACAGTCAATAAAGCGAATGGACCTTGCTGAGTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR CAA 90 bp | CACAATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTAGCTGCGGGCCCTGCTaGGCACCGGTGACCGCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: HNTPRPSWVELCTGWEGGSCGPC*APVTAG Trigger: CCCTGCGGTCACCGGTGCCAAGCAGGGCCCGCAGCT...ACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATTGTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR CAA 90 bp | AGCAAGAAGCCGTCTGTCAACCAGGTGGTCCATATGGCGATCCCCCAGCCTCGGAAGAGGAACGAGGTTTaGCCCACGCTGCTGTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: SKKPSVNQVVHMAIPQPRKRNEV*PTLLFP Trigger: TGGGAACAGCAGCGTGGGCAAAACCTCGTTCCTCTT...CCGAGGCTGGGGGATCGCCATATGGACCACCTGGTTGACAGACGGCTTCTTGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR CAA 90 bp | CACAATACACCACGGCCGAGCTGGGTGGAGCTATGTACAGGGTGGGAAGGGGGTAAGAGGAACGAGGTTTaGCCCACGCTGCTGTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: HNTPRPSWVELCTGWEGGKRNEV*PTLLFP Trigger: TGGGAACAGCAGCGTGGGCAAAACCTCGTTCCTCTT...ACCCCCTTCCCACCCTGTACATAGCTCCACCCAGCTCGGCCGTGGTGTATTGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR CAA 90 bp | TCAGCCTGCTGCAGAGTGACATCTGGTCCCCTCTTCACAACTGACAACTGTGGAAAGAGGAACGAGGTTTaGCCCACGCTGCTGTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: SACCRVTSGPLFTTDNCGKRNEV*PTLLFP Trigger: TGGGAACAGCAGCGTGGGCAAAACCTCGTTCCTCTT...TCCACAGTTGTCAGTTGTGAAGAGGGGACCAGATGTCACTCTGCAGCAGGCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS-3UTR CAA 90 bp | GAGGAGTGGGACACATTTGACACTCACGACGTCAGAACAGGTTTGGGGGTATCCAAGAGGAACGAGGTTTaGCCCACGCTGCTGTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: EEWDTFDTHDVRTGLGVSKRNEV*PTLLFP Trigger: TGGGAACAGCAGCGTGGGCAAAACCTCGTTCCTCTT...GGATACCCCCAAACCTGTTCTGACGTCGTGAGTGTCAAATGTGTCCCACTCCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||
| CDS GCA 72 bp | GCCTCAAAGAACTCAAAGCCCAGGTGGTCAGCCAGCTaGCGGCCACGCTCTGAGGACACCACTCGCTCATCT | + |
|
Preference number: 6 (lower is better) Translates to: ASKNSKPRWSAS*RPRSEDTTRSS Trigger: AGATGAGCGAGTGGTGTCCTCAGAGCGTGGCCGGCAGCTGGCTGACCACCTGGGCTTTGAGTTCTTTGAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034301.12 ENSMUST00000110090.8 ENSMUST00000110092.6 ENSMUST00000110093.9 |
||