Pregenerated sensors for RAB39B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031202Ensembl transcript IDs: ENSMUST00000033545.6
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCACACAGAGCAGCCATTGCTGAGCCTGGCCCACAAAACAAGGTCTaGTCCAGCCCCTGTCAGCAATTTAGTCCCTCAGTCACAGCACCC | + |
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Preference number: 1 (lower is better) Translates to: AHRAAIAEPGPQNKV*SSPCQQFSPSVTAP Trigger: GGGTGCTGTGACTGAGGGACTAAATTGCTGACAGGGGCTGGACCAGACCTTGTTTTGTGGGCCAGGCTCAGCAATGGCTGCTCTGTGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR TCA 90 bp | ACCCTTAATATGTGGTCCACAAAGGGCACACAGAGCAGCCATTGCTaGGCCTGGCCCACAAAACAAGGTCTGGTCCAGCCCCTGTCAGCA | + |
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Preference number: 1 (lower is better) Translates to: TLNMWSTKGTQSSHC*AWPTKQGLVQPLSA Trigger: TGCTGACAGGGGCTGGACCAGACCTTGTTTTGTGGGCCAGGCTCAGCAATGGCTGCTCTGTGTGCCCTTTGTGGACCACATATTAAGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR TCA 90 bp | TTAGTCCCTCAGTCACAGCACCCAGGCTCCCTATCTACCCACACATaGGCCTGTCAGAGATCCAGGCCTAGGAAGAAGGCTCATTTATTA | + |
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Preference number: 1 (lower is better) Translates to: LVPQSQHPGSLSTHT*ACQRSRPRKKAHLL Trigger: TAATAAATGAGCCTTCTTCCTAGGCCTGGATCTCTGACAGGCTCATGTGTGGGTAGATAGGGAGCCTGGGTGCTGTGACTGAGGGACTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR TCA 90 bp | CAGAGATCCAGGCCTAGGAAGAAGGCTCATTTATTATCCAAACGTTaGGTTCTCTTCAGTCACATAAGGATTCTATTTATTTTGATAACT | + |
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Preference number: 1 (lower is better) Translates to: QRSRPRKKAHLLSKR*VLFSHIRILFILIT Trigger: AGTTATCAAAATAAATAGAATCCTTATGTGACTGAAGAGAACTCAACGTTTGGATAATAAATGAGCCTTCTTCCTAGGCCTGGATCTCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR CCA 90 bp | AGTCAAGGTCATTGTGAGGTGAGTACTTTATCCCCAACCCACTCCCCATTGTTGCCACAAAACAAGGTCTaGTCCAGCCCCTGTCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: SQGHCEVSTLSPTHSPLLPQNKV*SSPCQQ Trigger: TTGCTGACAGGGGCTGGACCAGACCTTGTTTTGTGG...CAACAATGGGGAGTGGGTTGGGGATAAAGTACTCACCTCACAATGACCTTGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR TCA 90 bp | CAAGAGTCTAATCAACTCTTATTTATCCACTGGATAATCCTGGGTTTTAGAACACAGAGCAGCCATTGCTaGGCCTGGCCCACAAAACAA | + |
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Preference number: 2 (lower is better) Translates to: QESNQLLFIHWIILGFRTQSSHC*AWPTKQ Trigger: TTGTTTTGTGGGCCAGGCTCAGCAATGGCTGCTCTG...TGTTCTAAAACCCAGGATTATCCAGTGGATAAATAAGAGTTGATTAGACTCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR CCA 90 bp | GTGGCCTTTACCTTTTATTCATTTCTAGATTCCTGCAAGATTATAGCTGAGCTGCAGACCCTTAATATGTaGTCCACAAAGGGCACACAG | + |
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Preference number: 2 (lower is better) Translates to: VAFTFYSFLDSCKIIAELQTLNM*STKGTQ Trigger: CTGTGTGCCCTTTGTGGACCACATATTAAGGGTCTG...CAGCTCAGCTATAATCTTGCAGGAATCTAGAAATGAATAAAAGGTAAAGGCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR TCA 90 bp | CAAGAGTCTAATCAACTCTTATTTATCCACTGGATAATCCTGGGTTTTAGAACAAAGGTCATTGTGAGGTaGGTACTTTATCCCCAACCC | + |
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Preference number: 2 (lower is better) Translates to: QESNQLLFIHWIILGFRTKVIVR*VLYPQP Trigger: GGGTTGGGGATAAAGTACTCACCTCACAATGACCTT...TGTTCTAAAACCCAGGATTATCCAGTGGATAAATAAGAGTTGATTAGACTCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR TCA 90 bp | GTGGCCTTTACCTTTTATTCATTTCTAGATTCCTGCAAGATTATAGCTGAGCTGTATGGTCACCATGTCTaGAAAGTTGTAATACCAAGG | + |
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Preference number: 2 (lower is better) Translates to: VAFTFYSFLDSCKIIAELYGHHV*KVVIPR Trigger: CCTTGGTATTACAACTTTTCAGACATGGTGACCATA...CAGCTCAGCTATAATCTTGCAGGAATCTAGAAATGAATAAAAGGTAAAGGCCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR CCA 90 bp | GTGGCCTTTACCTTTTATTCATTTCTAGATTCCTGCAAGATTATAGCTGAGCTGAGAGGGGAAATAATGTaGCCTTTGAGTTACAGTGTT | + |
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Preference number: 2 (lower is better) Translates to: VAFTFYSFLDSCKIIAELRGEIM*PLSYSV Trigger: AACACTGTAACTCAAAGGCCACATTATTTCCCCTCT...CAGCTCAGCTATAATCTTGCAGGAATCTAGAAATGAATAAAAGGTAAAGGCCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR TCA 90 bp | CAAGAGTCTAATCAACTCTTATTTATCCACTGGATAATCCTGGGTTTTAGAACATCGTTGTCAGGTATCTaGAGAAGCAAGCAGTATACT | + |
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Preference number: 2 (lower is better) Translates to: QESNQLLFIHWIILGFRTSLSGI*RSKQYT Trigger: AGTATACTGCTTGCTTCTTCAGATACCTGACAACGA...TGTTCTAAAACCCAGGATTATCCAGTGGATAAATAAGAGTTGATTAGACTCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR GCA 90 bp | AAAGCTAGGTATCAGGTAGGCTTGGTTCTTGCTTTCTTATTATGTAAAATGGGATTGGCAACTTTATCATaGCAGTGTACACTTTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: KARYQVGLVLAFLLCKMGLATLS*QCTLFS Trigger: TGAGAAAAGTGTACACTGGCATGATAAAGTTGCCAA...TCCCATTTTACATAATAAGAAAGCAAGAACCAAGCCTACCTGATACCTAGCTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR CCA 90 bp | GTGGCCTTTACCTTTTATTCATTTCTAGATTCCTGCAAGATTATAGCTGAGCTGTTTCTTTCACATAGTTaGCAACTTTATCATGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: VAFTFYSFLDSCKIIAELFLSHS*QLYHAS Trigger: ACTGGCATGATAAAGTTGCCAACTATGTGAAAGAAA...CAGCTCAGCTATAATCTTGCAGGAATCTAGAAATGAATAAAAGGTAAAGGCCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR TCA 72 bp | ATGTGGTCCACAAAGGGCACACAGAGCAGCCATTGCTaGGCCTGGCCCACAAAACAAGGTCTGGTCCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: MWSTKGTQSSHC*AWPTKQGLVQP Trigger: GGGCTGGACCAGACCTTGTTTTGTGGGCCAGGCTCAGCAATGGCTGCTCTGTGTGCCCTTTGTGGACCACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR CCA 72 bp | GCAGCCATTGCTGAGCCTGGCCCACAAAACAAGGTCTaGTCCAGCCCCTGTCAGCAATTTAGTCCCTCAGTC | + |
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Preference number: 3 (lower is better) Translates to: AAIAEPGPQNKV*SSPCQQFSPSV Trigger: GACTGAGGGACTAAATTGCTGACAGGGGCTGGACCAGACCTTGTTTTGTGGGCCAGGCTCAGCAATGGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR TCA 72 bp | GTACATAGCAGACAGGTAGTCAAGGTCATTGTGAGGTaGGTACTTTATCCCCAACCCACTCCCCATTGTTGT | + |
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Preference number: 3 (lower is better) Translates to: VHSRQVVKVIVR*VLYPQPTPHCC Trigger: ACAACAATGGGGAGTGGGTTGGGGATAAAGTACTCACCTCACAATGACCTTGACTACCTGTCTGCTATGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR-3UTR CAA 90 bp | AAAGCTAGGTATCAGGTAGGCTTGGTTCTTGCTTTCTTATTATGTAAAATGGGACACACAGAGCAGCCATaGCTGAGCCTGGCCCACAAA | + |
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Preference number: 3 (lower is better) Translates to: KARYQVGLVLAFLLCKMGHTEQP*LSLAHK Trigger: TTTGTGGGCCAGGCTCAGCAATGGCTGCTCTGTGTG...TCCCATTTTACATAATAAGAAAGCAAGAACCAAGCCTACCTGATACCTAGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR TCA 72 bp | TTGTTGACAATCTCTGTGTTGTCGTTGTCAGGTATCTaGAGAAGCAAGCAGTATACTTACTTCGGGATTATG | + |
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Preference number: 3 (lower is better) Translates to: LLTISVLSLSGI*RSKQYTYFGIM Trigger: CATAATCCCGAAGTAAGTATACTGCTTGCTTCTTCAGATACCTGACAACGACAACACAGAGATTGTCAACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR GCA 72 bp | TTAAAACTTATGGAAGAAGTCAAGTTCAGCCACCTCTaGTGCATTTATGCTGGGTACTTTGAAACCCACTTT | + |
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Preference number: 3 (lower is better) Translates to: LKLMEEVKFSHL*CIYAGYFETHF Trigger: AAAGTGGGTTTCAAAGTACCCAGCATAAATGCAGCAGAGGTGGCTGAACTTGACTTCTTCCATAAGTTTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR TCA 72 bp | AGGCCTAGGAAGAAGGCTCATTTATTATCCAAACGTTaGGTTCTCTTCAGTCACATAAGGATTCTATTTATT | + |
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Preference number: 3 (lower is better) Translates to: RPRKKAHLLSKR*VLFSHIRILFI Trigger: AATAAATAGAATCCTTATGTGACTGAAGAGAACTCAACGTTTGGATAATAAATGAGCCTTCTTCCTAGGCCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR TCA 72 bp | AGAATGCTAGACCTTGAAAGAGCTTTACCAAATAGTTaGTTCATATGGGCTTTTCATTTTACAGTTGAACTG | + |
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Preference number: 3 (lower is better) Translates to: RMLDLERALPNS*FIWAFHFTVEL Trigger: CAGTTCAACTGTAAAATGAAAAGCCCATATGAATCAACTATTTGGTAAAGCTCTTTCAAGGTCTAGCATTCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR TCA 90 bp | CACACAGAGCAGCCATTGCTGAGCCTGGCCCACAAAACAAGGTCTGGTCCAGCCGTGGGATCTGAAACCTaGGCAAAGCGGCCCTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: HTEQPLLSLAHKTRSGPAVGSET*AKRPSV Trigger: CACCGAGGGCCGCTTTGCTCAGGTTTCAGATCCCAC...GGCTGGACCAGACCTTGTTTTGTGGGCCAGGCTCAGCAATGGCTGCTCTGTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR GCA 90 bp | CACACAGAGCAGCCATTGCTGAGCCTGGCCCACAAAACAAGGTCTGGTCCAGCCGGATCAGGCAGGACTTaGCCACCGTGGAATCGCCGA | + |
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Preference number: 4 (lower is better) Translates to: HTEQPLLSLAHKTRSGPAGSGRT*PPWNRR Trigger: TCGGCGATTCCACGGTGGGCAAGTCCTGCCTGATCC...GGCTGGACCAGACCTTGTTTTGTGGGCCAGGCTCAGCAATGGCTGCTCTGTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CCA 90 bp | CACACAGAGCAGCCATTGCTGAGCCTGGCCCACAAAACAAGGTCTGGTCCAGCCCACTCATGGACATTCTaGAAGGACCTGCGGTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: HTEQPLLSLAHKTRSGPAHSWTF*KDLRLV Trigger: TACCAACCGCAGGTCCTTCCAGAATGTCCATGAGTG...GGCTGGACCAGACCTTGTTTTGTGGGCCAGGCTCAGCAATGGCTGCTCTGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR TCA 90 bp | GTGGCCTTTACCTTTTATTCATTTCTAGATTCCTGCAAGATTATAGCTGAGCTGCAAAGCGGCCCTCGGTaGAGCGGCGGATCAGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: VAFTFYSFLDSCKIIAELQSGPR*SGGSGR Trigger: CCTGCCTGATCCGCCGCTTCACCGAGGGCCGCTTTG...CAGCTCAGCTATAATCTTGCAGGAATCTAGAAATGAATAAAAGGTAAAGGCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CCA 90 bp | AGTCAAGGTCATTGTGAGGTGAGTACTTTATCCCCAACCCACTCCCCATTGTTGAATCTACCCCCACGGTaGGATCTGAAACCTGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: SQGHCEVSTLSPTHSPLLNLPPR*DLKPEQ Trigger: TTGCTCAGGTTTCAGATCCCACCGTGGGGGTAGATT...CAACAATGGGGAGTGGGTTGGGGATAAAGTACTCACCTCACAATGACCTTGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR TCA 90 bp | AAAGCTAGGTATCAGGTAGGCTTGGTTCTTGCTTTCTTATTATGTAAAATGGGACCCCACGGTGGGATCTaGAACCTGAGCAAAGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: KARYQVGLVLAFLLCKMGPHGGI*NLSKAA Trigger: GGCCGCTTTGCTCAGGTTTCAGATCCCACCGTGGGG...TCCCATTTTACATAATAAGAAAGCAAGAACCAAGCCTACCTGATACCTAGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CCA 90 bp | AGTCAAGGTCATTGTGAGGTGAGTACTTTATCCCCAACCCACTCCCCATTGTTGTCTTCTAACCACTCATaGACATTCTGGAAGGACCTG | + |
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Preference number: 4 (lower is better) Translates to: SQGHCEVSTLSPTHSPLLSSNHS*TFWKDL Trigger: CAGGTCCTTCCAGAATGTCCATGAGTGGTTAGAAGA...CAACAATGGGGAGTGGGTTGGGGATAAAGTACTCACCTCACAATGACCTTGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CCA 90 bp | GTGGCCTTTACCTTTTATTCATTTCTAGATTCCTGCAAGATTATAGCTGAGCTGACAATGAGCCGGAACTaGTACAGCCAGATGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: VAFTFYSFLDSCKIIAELTMSRN*YSQMAS Trigger: GGAGGCCATCTGGCTGTACCAGTTCCGGCTCATTGT...CAGCTCAGCTATAATCTTGCAGGAATCTAGAAATGAATAAAAGGTAAAGGCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CCA 90 bp | GAAGAAGGCTCATTTATTATCCAAACGTTGAGTTCTCTTCAGTCACATAAGGATAGTTTCTCGGCCTCGTaGCGAGTCACTTGCCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: EEGSFIIQTLSSLQSHKDSFSAS*RVTCLC Trigger: ACAGAGGCAAGTGACTCGCCACGAGGCCGAGAAACT...ATCCTTATGTGACTGAAGAGAACTCAACGTTTGGATAATAAATGAGCCTTCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR TCA 90 bp | CAAGAGTCTAATCAACTCTTATTTATCCACTGGATAATCCTGGGTTTTAGAACACCCAGATCTGGAGCTTaGTGCGTTTTCCTGGCTCGA | + |
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Preference number: 4 (lower is better) Translates to: QESNQLLFIHWIILGFRTPRSGA*CVFLAR Trigger: TCGAGCCAGGAAAACGCATCAAGCTCCAGATCTGGG...TGTTCTAAAACCCAGGATTATCCAGTGGATAAATAAGAGTTGATTAGACTCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR TCA 90 bp | AAAGCTAGGTATCAGGTAGGCTTGGTTCTTGCTTTCTTATTATGTAAAATGGGAGAGAAGACCACCTACTaGATTCCTGTAGTAGGCGCG | + |
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Preference number: 4 (lower is better) Translates to: KARYQVGLVLAFLLCKMGEKTTY*IPVVGA Trigger: CGCGCCTACTACAGGAATTCAGTAGGTGGTCTTCTC...TCCCATTTTACATAATAAGAAAGCAAGAACCAAGCCTACCTGATACCTAGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR GCA 90 bp | GAAGAAGGCTCATTTATTATCCAAACGTTGAGTTCTCTTCAGTCACATAAGGATGTACTTCATGCCGTATaGAGCAGCCAGTTTCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: EEGSFIIQTLSSLQSHKDVLHAV*SSQFLG Trigger: GCCGAGAAACTGGCTGCTGCATACGGCATGAAGTAC...ATCCTTATGTGACTGAAGAGAACTCAACGTTTGGATAATAAATGAGCCTTCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR TCA 90 bp | CTATATGTTTCTTTATGGTCACCATGTCTGAAAAGTTGTAATACCAAGGAACTGGATCTGAACCTCTCTTaGCCCGCTGTATCCCAGATC | + |
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Preference number: 4 (lower is better) Translates to: LYVSLWSPCLKSCNTKELDLNLS*PAVSQI Trigger: GATCTGGGATACAGCGGGTCAAGAGAGGTTCAGATC...CAGTTCCTTGGTATTACAACTTTTCAGACATGGTGACCATAAAGAAACATATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR TCA 90 bp | GTGGCCTTTACCTTTTATTCATTTCTAGATTCCTGCAAGATTATAGCTGAGCTGAATGGCATCTCGGGCTaGCGTCTCAATGTACTTCAT | + |
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Preference number: 4 (lower is better) Translates to: VAFTFYSFLDSCKIIAELNGISG*RLNVLH Trigger: ATGAAGTACATTGAGACGTCAGCCCGAGATGCCATT...CAGCTCAGCTATAATCTTGCAGGAATCTAGAAATGAATAAAAGGTAAAGGCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR GCA 90 bp | CAAGAGTCTAATCAACTCTTATTTATCCACTGGATAATCCTGGGTTTTAGAACATCGTGGCGAGTCACTTaGCTCTGTGTATCCAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: QESNQLLFIHWIILGFRTSWRVT*LCVSRS Trigger: TGACCTGGATACACAGAGGCAAGTGACTCGCCACGA...TGTTCTAAAACCCAGGATTATCCAGTGGATAAATAAGAGTTGATTAGACTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CCA 90 bp | AAAGCTAGGTATCAGGTAGGCTTGGTTCTTGCTTTCTTATTATGTAAAATGGGACTTGATGCGTTTTCCTaGCTCGATCTCCACCAAACG | + |
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Preference number: 4 (lower is better) Translates to: KARYQVGLVLAFLLCKMGLDAFS*LDLHQT Trigger: CGTTTGGTGGAGATCGAGCCAGGAAAACGCATCAAG...TCCCATTTTACATAATAAGAAAGCAAGAACCAAGCCTACCTGATACCTAGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CCA 90 bp | GTGGCCTTTACCTTTTATTCATTTCTAGATTCCTGCAAGATTATAGCTGAGCTGGCTGTATCCCAGATCTaGAGCTTGATGCGTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: VAFTFYSFLDSCKIIAELAVSQI*SLMRFP Trigger: AGGAAAACGCATCAAGCTCCAGATCTGGGATACAGC...CAGCTCAGCTATAATCTTGCAGGAATCTAGAAATGAATAAAAGGTAAAGGCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR GCA 90 bp | GAAGAAGGCTCATTTATTATCCAAACGTTGAGTTCTCTTCAGTCACATAAGGATTCTCAATGTACTTCATaGCGTATGCAGCAGCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: EEGSFIIQTLSSLQSHKDSQCTS*RMQQPV Trigger: AACTGGCTGCTGCATACGGCATGAAGTACATTGAGA...ATCCTTATGTGACTGAAGAGAACTCAACGTTTGGATAATAAATGAGCCTTCTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR CAA 72 bp | AGTCCAGGTATGATTAGAGGGGAAATAATGTGGCCTTaGAGTTACAGTGTTTCCTTTTTCTCCTTACATGAT | + |
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Preference number: 4 (lower is better) Translates to: SPGMIRGEIMWP*SYSVSFFSLHD Trigger: ATCATGTAAGGAGAAAAAGGAAACACTGTAACTCAAAGGCCACATTATTTCCCCTCTAATCATACCTGGACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CCA 90 bp | CTATATGTTTCTTTATGGTCACCATGTCTGAAAAGTTGTAATACCAAGGAACTGGCTGAACGTGTACTTTaGTCTCTTCTAACCACTCAT | + |
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Preference number: 4 (lower is better) Translates to: LYVSLWSPCLKSCNTKELAERVL*SLLTTH Trigger: ATGAGTGGTTAGAAGAGACCAAAGTACACGTTCAGC...CAGTTCCTTGGTATTACAACTTTTCAGACATGGTGACCATAAAGAAACATATAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CCA 90 bp | GTGGCCTTTACCTTTTATTCATTTCTAGATTCCTGCAAGATTATAGCTGAGCTGAGAATGAACAACATTTaGTACAAATCCACTCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: VAFTFYSFLDSCKIIAELRMNNI*YKSTLH Trigger: GTGAAGAGTGGATTTGTACCAAATGTTGTTCATTCT...CAGCTCAGCTATAATCTTGCAGGAATCTAGAAATGAATAAAAGGTAAAGGCCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| 3UTR CAA 72 bp | TTCAGTTGTGCAGTTAATCCCTTATTTAATGCCCTCTaGTCAATAATACCTGAGTGGCCTTTACCTTTTATT | + |
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Preference number: 4 (lower is better) Translates to: FSCAVNPLFNAL*SIIPEWPLPFI Trigger: AATAAAAGGTAAAGGCCACTCAGGTATTATTGACAAGAGGGCATTAAATAAGGGATTAACTGCACAACTGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CAA 90 bp | CACACAGAGCAGCCATTGCTGAGCCTGGCCCACAAAACAAGGTCTGGTCCAGCCTCCCAGATCTGGAGCTaGATGCGTTTTCCTGGCTCG | + |
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Preference number: 5 (lower is better) Translates to: HTEQPLLSLAHKTRSGPASQIWS*MRFPGS Trigger: CGAGCCAGGAAAACGCATCAAGCTCCAGATCTGGGA...GGCTGGACCAGACCTTGTTTTGTGGGCCAGGCTCAGCAATGGCTGCTCTGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CAA 90 bp | CACACAGAGCAGCCATTGCTGAGCCTGGCCCACAAAACAAGGTCTGGTCCAGCCCAGAACAAATACAATTaGGTAGGGCTGAACGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: HTEQPLLSLAHKTRSGPAQNKYN*VGLNVY Trigger: GTACACGTTCAGCCCTACCAAATTGTATTTGTTCTG...GGCTGGACCAGACCTTGTTTTGTGGGCCAGGCTCAGCAATGGCTGCTCTGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS TCA 90 bp | TGTCAGGTCTGTGAAGGCTTTCTCCACATTAATGGCATCTCGGGCTaGCGTCTCAATGTACTTCATGCCGTATGCAGCAGCCAGTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: CQVCEGFLHINGISG*RLNVLHAVCSSQFL Trigger: GAGAAACTGGCTGCTGCATACGGCATGAAGTACATTGAGACGTCAGCCCGAGATGCCATTAATGTGGAGAAAGCCTTCACAGACCTGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS CCA 90 bp | GACCCACCAGAACAAATACAATTTGGTAGGGCTGAACGTGTACTTTaGTCTCTTCTAACCACTCATGGACATTCTGGAAGGACCTGCGGT | + |
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Preference number: 5 (lower is better) Translates to: DPPEQIQFGRAERVL*SLLTTHGHSGRTCG Trigger: ACCGCAGGTCCTTCCAGAATGTCCATGAGTGGTTAGAAGAGACCAAAGTACACGTTCAGCCCTACCAAATTGTATTTGTTCTGGTGGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CAA 90 bp | CTATATGTTTCTTTATGGTCACCATGTCTGAAAAGTTGTAATACCAAGGAACTGCGGATCAGGCAGGACTaGCCCACCGTGGAATCGCCG | + |
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Preference number: 5 (lower is better) Translates to: LYVSLWSPCLKSCNTKELRIRQD*PTVESP Trigger: CGGCGATTCCACGGTGGGCAAGTCCTGCCTGATCCG...CAGTTCCTTGGTATTACAACTTTTCAGACATGGTGACCATAAAGAAACATATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CAA 90 bp | CAAGAGTCTAATCAACTCTTATTTATCCACTGGATAATCCTGGGTTTTAGAACACTCGTGGCGAGTCACTaGCCTCTGTGTATCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: QESNQLLFIHWIILGFRTLVASH*PLCIQV Trigger: GACCTGGATACACAGAGGCAAGTGACTCGCCACGAG...TGTTCTAAAACCCAGGATTATCCAGTGGATAAATAAGAGTTGATTAGACTCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CAA 90 bp | CTATATGTTTCTTTATGGTCACCATGTCTGAAAAGTTGTAATACCAAGGAACTGGGATCTGAACCTCTCTaGACCCGCTGTATCCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: LYVSLWSPCLKSCNTKELGSEPL*TRCIPD Trigger: ATCTGGGATACAGCGGGTCAAGAGAGGTTCAGATCC...CAGTTCCTTGGTATTACAACTTTTCAGACATGGTGACCATAAAGAAACATATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CAA 90 bp | CTATATGTTTCTTTATGGTCACCATGTCTGAAAAGTTGTAATACCAAGGAACTGTGGAAGGACCTGCGGTaGGTAATGTCAAATAAGAGA | + |
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Preference number: 5 (lower is better) Translates to: LYVSLWSPCLKSCNTKELWKDLR*VMSNKR Trigger: TCTCTTATTTGACATTACCAACCGCAGGTCCTTCCA...CAGTTCCTTGGTATTACAACTTTTCAGACATGGTGACCATAAAGAAACATATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS-3UTR CAA 90 bp | CTATATGTTTCTTTATGGTCACCATGTCTGAAAAGTTGTAATACCAAGGAACTGCATCTCCTCTCTGATTaGATAACCTCTTCTGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: LYVSLWSPCLKSCNTKELHLLSD*ITSSEE Trigger: TTCTTCAGAAGAGGTTATCAAATCAGAGAGGAGATG...CAGTTCCTTGGTATTACAACTTTTCAGACATGGTGACCATAAAGAAACATATAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS CCA 72 bp | TTCATGCCGTATGCAGCAGCCAGTTTCTCGGCCTCGTaGCGAGTCACTTGCCTCTGTGTATCCAGGTCACAC | + |
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Preference number: 6 (lower is better) Translates to: FMPYAAASFSAS*RVTCLCVSRSH Trigger: GTGTGACCTGGATACACAGAGGCAAGTGACTCGCCACGAGGCCGAGAAACTGGCTGCTGCATACGGCATGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS TCA 72 bp | TGTGAAGGCTTTCTCCACATTAATGGCATCTCGGGCTaGCGTCTCAATGTACTTCATGCCGTATGCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: CEGFLHINGISG*RLNVLHAVCSS Trigger: GCTGCTGCATACGGCATGAAGTACATTGAGACGTCAGCCCGAGATGCCATTAATGTGGAGAAAGCCTTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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| CDS CAA 72 bp | TCTAACCACTCATGGACATTCTGGAAGGACCTGCGGTaGGTAATGTCAAATAAGAGAAGACCACCTACTGAA | + |
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Preference number: 6 (lower is better) Translates to: SNHSWTFWKDLR*VMSNKRRPPTE Trigger: TTCAGTAGGTGGTCTTCTCTTATTTGACATTACCAACCGCAGGTCCTTCCAGAATGTCCATGAGTGGTTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033545.6 |
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