Pregenerated sensors for RAB39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055069Ensembl transcript IDs: ENSMUST00000068449.4
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGTATGACAGTGCGCATGTGGTCTGGGGACAACTTCAAGGGAAGTaGGTTCTTTCCTTCTACCACACGGGCCCCAGGGATGAAGCTCAA | + |
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Preference number: 1 (lower is better) Translates to: VYDSAHVVWGQLQGK*VLSFYHTGPRDEAQ Trigger: TTGAGCTTCATCCCTGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGACCACATGCGCACTGTCATACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR TCA 90 bp | CACACAGAGGCAGAGGCAGGCAGATCTCTTGAGTTTACATCTAGCTaGGTCTACATACTGAGTTTGAGGTCCACAAGGCCTCCCAGAGTG | + |
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Preference number: 1 (lower is better) Translates to: HTEAEAGRSLEFTSS*VYILSLRSTRPPRV Trigger: CACTCTGGGAGGCCTTGTGGACCTCAAACTCAGTATGTAGACTCAGCTAGATGTAAACTCAAGAGATCTGCCTGCCTCTGCCTCTGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR-3UTR TCA 90 bp | AAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCAGGGATGAAGCTCAAGAGCTTCTTTACCCAGTaGGTCACCTCATTGGCCCTT | + |
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Preference number: 2 (lower is better) Translates to: KGSGFFPSTTRAPGMKLKSFFTQ*VTSLAL Trigger: AAGGGCCAATGAGGTGACTCACTGGGTAAAGAAGCT...CTTGAGCTTCATCCCTGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR-3UTR TCA 90 bp | CAACTTCAAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCAGGGATGAAGTGTCCACCAGCTTATaGAACGGGTCTGGATGTTTG | + |
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Preference number: 2 (lower is better) Translates to: QLQGKWVLSFYHTGPRDEVSTSL*NGSGCL Trigger: CAAACATCCAGACCCGTTTCATAAGCTGGTGGACAC...TTCATCCCTGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTTGAAGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR-3UTR TCA 90 bp | AAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCAGGGATGAAGCTCAAGTTCTGCTGTGAATGTTaGCATCTATCCAGAGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: KGSGFFPSTTRAPGMKLKFCCEC*HLSRVA Trigger: TGCCACTCTGGATAGATGTCAACATTCACAGCAGAA...CTTGAGCTTCATCCCTGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR-3UTR TCA 90 bp | TTTGATGCAGGGGATTGGATCTGGGTTTTCAGAGCTAAAGGAACATTCTATCACGTATGTGCATGTGTATaGCAGTGCGCATGTGGTCTG | + |
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Preference number: 2 (lower is better) Translates to: FDAGDWIWVFRAKGTFYHVCACV*QCACGL Trigger: CAGACCACATGCGCACTGTCATACACATGCACATAC...GTGATAGAATGTTCCTTTAGCTCTGAAAACCCAGATCCAATCCCCTGCATCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR-3UTR GCA 90 bp | GCACTTGGGAGACTGAGGCAAGTGGATCTGAGCTATATAGAAGAACTATCTGTAACTCTGCCTTTTTCCTaGTCTAGTTTTGATGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: ALGRLRQVDLSYIEELSVTLPFS*SSFDAG Trigger: CCCTGCATCAAAACTAGAGCAGGAAAAAGGCAGAGT...TACAGATAGTTCTTCTATATAGCTCAGATCCACTTGCCTCAGTCTCCCAAGTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR-3UTR TCA 90 bp | AGTGAGAATGGATGTAATTTTGTAGACCCTGGTTTCAAGAGAAAAGTTGTCTCCTGCATCATTCTGCTGTaGATGTTGACATCTATCCAG | + |
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Preference number: 2 (lower is better) Translates to: SENGCNFVDPGFKRKVVSCIILL*MLTSIQ Trigger: CTGGATAGATGTCAACATTCACAGCAGAATGATGCA...GGAGACAACTTTTCTCTTGAAACCAGGGTCTACAAAATTACATCCATTCTCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR TCA 72 bp | GGGCGTTCACTCCCTGCATCATTCTGCTGTGAATGTTaGCATCTATCCAGAGTGGCACGGTCTGTCTGTGGT | + |
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Preference number: 3 (lower is better) Translates to: GRSLPASFCCEC*HLSRVARSVCG Trigger: ACCACAGACAGACCGTGCCACTCTGGATAGATGTCAACATTCACAGCAGAATGATGCAGGGAGTGAACGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR CCA 72 bp | TTAAGGAGCTGGGCATGGTGCCACATATCCAGCACTTaGGAGACTGAGGCAAGTGGATCTGAGCTATATAGA | + |
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Preference number: 3 (lower is better) Translates to: LRSWAWCHISST*ETEASGSELYR Trigger: TCTATATAGCTCAGATCCACTTGCCTCAGTCTCCCAAGTGCTGGATATGTGGCACCATGCCCAGCTCCTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR TCA 72 bp | ATCTGGGTTTTCAGAGCTAAAGGAACATTCTATCACTaGGCCACAGGCACAGCCTTCAGGTTGGACCATACG | + |
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Preference number: 3 (lower is better) Translates to: IWVFRAKGTFYH*ATGTAFRLDHT Trigger: CGTATGGTCCAACCTGAAGGCTGTGCCTGTGGCTCAGTGATAGAATGTTCCTTTAGCTCTGAAAACCCAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR TCA 72 bp | GCAGAGGCAGGCAGATCTCTTGAGTTTACATCTAGCTaGGTCTACATACTGAGTTTGAGGTCCACAAGGCCT | + |
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Preference number: 3 (lower is better) Translates to: AEAGRSLEFTSS*VYILSLRSTRP Trigger: AGGCCTTGTGGACCTCAAACTCAGTATGTAGACTCAGCTAGATGTAAACTCAAGAGATCTGCCTGCCTCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR-3UTR CAA 90 bp | CAACTTCAAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCAGGGATGAAGTTTCAAGAGAAAAGTaGTCTCCTTTTCCTCCTAAC | + |
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Preference number: 3 (lower is better) Translates to: QLQGKWVLSFYHTGPRDEVSREK*SPFPPN Trigger: GTTAGGAGGAAAAGGAGACAACTTTTCTCTTGAAAC...TTCATCCCTGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTTGAAGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR-3UTR CAA 90 bp | ATGACAGTGCGCATGTGGTCTGGGGACAACTTCAAGGGAAGTGGGTTCTTTCCTCCCTTCAAGTGCACTTaGTATTCAATACTAGCTAAC | + |
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Preference number: 3 (lower is better) Translates to: MTVRMWSGDNFKGSGFFPPFKCT*YSILAN Trigger: GTTAGCTAGTATTGAATACAAAGTGCACTTGAAGGG...AGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGACCACATGCGCACTGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR TCA 72 bp | AACTTAGCAGACTACCCAGCCTGTTGGTATAAGTGGTaGGACACAGTGTTGTGTCCACCAGCTTATGAAACG | + |
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Preference number: 3 (lower is better) Translates to: NLADYPACWYKW*DTVLCPPAYET Trigger: CGTTTCATAAGCTGGTGGACACAACACTGTGTCTCACCACTTATACCAACAGGCTGGGTAGTCTGCTAAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR CCA 72 bp | GAGCTCCCCTGGTCCGTGAAAACACACACTGTCTTCTaGTATCTCCACACAGAAATAACAAGAAAGAACTCA | + |
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Preference number: 3 (lower is better) Translates to: ELPWSVKTHTVF*YLHTEITRKNS Trigger: TGAGTTCTTTCTTGTTATTTCTGTGTGGAGATACCAGAAGACAGTGTGTGTTTTCACGGACCAGGGGAGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR TCA 72 bp | AAGTCTATAGATTTGGTGGCAAGCTTCTTTACCCAGTaGGTCACCTCATTGGCCCTTCAAGTGCACTTTGTA | + |
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Preference number: 3 (lower is better) Translates to: KSIDLVASFFTQ*VTSLALQVHFV Trigger: TACAAAGTGCACTTGAAGGGCCAATGAGGTGACTCACTGGGTAAAGAAGCTTGCCACCAAATCTATAGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR CCA 72 bp | GTTGGACCATACGTATCTTCACCATTATGTAGTGTATaGGCCTGTACTTGCTCATGTGTATCTGTATGTGCA | + |
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Preference number: 3 (lower is better) Translates to: VGPYVSSPLCSV*ACTCSCVSVCA Trigger: TGCACATACAGATACACATGAGCAAGTACAGGCCCATACACTACATAATGGTGAAGATACGTATGGTCCAAC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR-3UTR CAA 90 bp | GCACTTGGGAGACTGAGGCAAGTGGATCTGAGCTATATAGAAGAACTATCTGTACTAACGCCATTTTTCTaGTTCAGAACATCTTGTCCA | + |
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Preference number: 3 (lower is better) Translates to: ALGRLRQVDLSYIEELSVLTPFF*FRTSCP Trigger: TGGACAAGATGTTCTGAACAAGAAAAATGGCGTTAG...TACAGATAGTTCTTCTATATAGCTCAGATCCACTTGCCTCAGTCTCCCAAGTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR TCA 72 bp | TTATTCCCTTACAATATTCGCCTAAAGCATCTCCTTTaGACATTCACATCCCTTATTAATTGTGGAGATTCC | + |
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Preference number: 3 (lower is better) Translates to: LFPYNIRLKHLL*TFTSLINCGDS Trigger: GGAATCTCCACAATTAATAAGGGATGTGAATGTTCAAAGGAGATGCTTTAGGCGAATATTGTAAGGGAATAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR GCA 90 bp | TGGCAAGCTTCTTTACCCAGTGAGTCACCTCATTGGCCCTTCAAGTGCACTTTGTCGCAGGCGGGGGAGTaGAGCCCTGGGAAGCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: WQASLPSESPHWPFKCTLSQAGE*SPGKRP Trigger: GGGCCGCTTCCCAGGGCTGCACTCCCCCGCCTGCGA...CAAAGTGCACTTGAAGGGCCAATGAGGTGACTCACTGGGTAAAGAAGCTTGCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CCA 90 bp | CAACTTCAAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCAGGGATGAAGGGGGAGTGCAGCCCTaGGAAGCGGCCCTGGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: QLQGKWVLSFYHTGPRDEGGVQP*EAALGE Trigger: TTCACCCAGGGCCGCTTCCCAGGGCTGCACTCCCCC...TTCATCCCTGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTTGAAGTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR TCA 90 bp | ATGACAGTGCGCATGTGGTCTGGGGACAACTTCAAGGGAAGTGGGTTCTTTCCTGGAAGCGGCCCTGGGTaGAGCGGTGCAGAAGGCACG | + |
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Preference number: 4 (lower is better) Translates to: MTVRMWSGDNFKGSGFFPGSGPG*SGAEGT Trigger: CGTGCCTTCTGCACCGCTTCACCCAGGGCCGCTTCC...AGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGACCACATGCGCACTGTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR GCA 90 bp | TCTGGGGACAACTTCAAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCACCCTGGGTGAAGCGGTaGAGAAGGCACGACTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: SGDNFKGSGFFPSTTRAPPWVKR*RRHDLP Trigger: GGGCAAGTCGTGCCTTCTGCACCGCTTCACCCAGGG...TGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CCA 90 bp | TGGCAAGCTTCTTTACCCAGTGAGTCACCTCATTGGCCCTTCAAGTGCACTTTGCCTGGGAAGCGGCCCTaGGTGAAGCGGTGCAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: WQASLPSESPHWPFKCTLPGKRP*VKRCRR Trigger: CCTTCTGCACCGCTTCACCCAGGGCCGCTTCCCAGG...CAAAGTGCACTTGAAGGGCCAATGAGGTGACTCACTGGGTAAAGAAGCTTGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CCA 90 bp | TTTGATGCAGGGGATTGGATCTGGGTTTTCAGAGCTAAAGGAACATTCTATCACAGTCCACGCCGACTGTaGGGTCGCAGGCGGGGGAGT | + |
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Preference number: 4 (lower is better) Translates to: FDAGDWIWVFRAKGTFYHSPRRL*GRRRGS Trigger: ACTCCCCCGCCTGCGACCCCACAGTCGGCGTGGACT...GTGATAGAATGTTCCTTTAGCTCTGAAAACCCAGATCCAATCCCCTGCATCAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR TCA 90 bp | ATGACAGTGCGCATGTGGTCTGGGGACAACTTCAAGGGAAGTGGGTTCTTTCCTATAGGATCGAGTTATTaGTCTGAAGCGCTCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: MTVRMWSGDNFKGSGFFPIGSSY*SEALLP Trigger: GGGCAGGAGCGCTTCAGATCAATAACTCGATCCTAT...AGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGACCACATGCGCACTGTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR GCA 90 bp | TCTGGGGACAACTTCAAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCAATCCTCCAACTGAGTTaGGGTAATAGGATCGAGTTA | + |
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Preference number: 4 (lower is better) Translates to: SGDNFKGSGFFPSTTRAPILQLS*GNRIEL Trigger: TAACTCGATCCTATTACCGCAACTCAGTTGGAGGAT...TGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR GCA 90 bp | AAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCAGGGATGAAGCTCAAGGCTTCCTCAGAAGAATaGACAGTATTTGGAACGAAA | + |
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Preference number: 4 (lower is better) Translates to: KGSGFFPSTTRAPGMKLKASSEE*TVFGTK Trigger: TTTCGTTCCAAATACTGTGCATTCTTCTGAGGAAGC...CTTGAGCTTCATCCCTGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR GCA 90 bp | ATGACAGTGCGCATGTGGTCTGGGGACAACTTCAAGGGAAGTGGGTTCTTTCCTTTTTCTGGGCTTGACTaGTTCCTCAGAAGAATGCAC | + |
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Preference number: 4 (lower is better) Translates to: MTVRMWSGDNFKGSGFFPFSGLD*FLRRMH Trigger: GTGCATTCTTCTGAGGAAGCAGTCAAGCCCAGAAAA...AGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGACCACATGCGCACTGTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR TCA 90 bp | AGTGAGAATGGATGTAATTTTGTAGACCCTGGTTTCAAGAGAAAAGTTGTCTCCCCCAGAGCTGCAGCTTaGTCCTCTTGCCCGGCTCAA | + |
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Preference number: 4 (lower is better) Translates to: SENGCNFVDPGFKRKVVSPRAAA*SSCPAQ Trigger: TTGAGCCGGGCAAGAGGATCAAGCTGCAGCTCTGGG...GGAGACAACTTTTCTCTTGAAACCAGGGTCTACAAAATTACATCCATTCTCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR TCA 90 bp | GCACTTGGGAGACTGAGGCAAGTGGATCTGAGCTATATAGAAGAACTATCTGTATTCAGCTTCTTCCCTTaGAACCTGGCGTTGCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: ALGRLRQVDLSYIEELSVFSFFP*NLALRS Trigger: GCTTCGCAACGCCAGGTTTCAAGGGAAGAAGCTGAA...TACAGATAGTTCTTCTATATAGCTCAGATCCACTTGCCTCAGTCTCCCAAGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR TCA 90 bp | ATGACAGTGCGCATGTGGTCTGGGGACAACTTCAAGGGAAGTGGGTTCTTTCCTCCTTCCCATCCATCCTaGATACAAATCTCTCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: MTVRMWSGDNFKGSGFFPPSHPS*IQISPF Trigger: AAAAGGAGAGATTTGTATTCAGGATGGATGGGAAGG...AGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGACCACATGCGCACTGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CCA 90 bp | AGTGAGAATGGATGTAATTTTGTAGACCCTGGTTTCAAGAGAAAAGTTGTCTCCAGAATGCACAGTATTTaGAACGAAACCACTTTTAAC | + |
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Preference number: 4 (lower is better) Translates to: SENGCNFVDPGFKRKVVSRMHSI*NETTFN Trigger: GTTAAAAGTGGTTTCGTTCCAAATACTGTGCATTCT...GGAGACAACTTTTCTCTTGAAACCAGGGTCTACAAAATTACATCCATTCTCACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| 3UTR CAA 72 bp | GTAAATATAAGGACATGTCCAGAACCAGCAAAACACTaGTATTATGCTTTCTGCACCCAAATAGTTTTAACA | + |
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Preference number: 4 (lower is better) Translates to: VNIRTCPEPAKH*YYAFCTQIVLT Trigger: TGTTAAAACTATTTGGGTGCAGAAAGCATAATACAAGTGTTTTGCTGGTTCTGGACATGTCCTTATATTTAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS CCA 90 bp | CCGGCTCAATCTCCAGCAGGCGCGAGAAGAAGTCCACGCCGACTGTaGGGTCGCAGGCGGGGGAGTGCAGCCCTGGGAAGCGGCCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: PAQSPAGARRSPRRL*GRRRGSAALGSGPG Trigger: CCCAGGGCCGCTTCCCAGGGCTGCACTCCCCCGCCTGCGACCCCACAGTCGGCGTGGACTTCTTCTCGCGCCTGCTGGAGATTGAGCCGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS CCA 90 bp | GAAGTCCACGCCGACTGTGGGGTCGCAGGCGGGGGAGTGCAGCCCTaGGAAGCGGCCCTGGGTGAAGCGGTGCAGAAGGCACGACTTGCC | + |
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Preference number: 5 (lower is better) Translates to: EVHADCGVAGGGVQP*EAALGEAVQKARLA Trigger: GGCAAGTCGTGCCTTCTGCACCGCTTCACCCAGGGCCGCTTCCCAGGGCTGCACTCCCCCGCCTGCGACCCCACAGTCGGCGTGGACTTC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CAA 90 bp | CAACTTCAAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCAGGGATGAATGCAGCTTGATCCTCTaGCCCGGCTCAATCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: QLQGKWVLSFYHTGPRDECSLIL*PGSISS Trigger: GCTGGAGATTGAGCCGGGCAAGAGGATCAAGCTGCA...TTCATCCCTGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTTGAAGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CAA 90 bp | GCACTTGGGAGACTGAGGCAAGTGGATCTGAGCTATATAGAAGAACTATCTGTATCCCAGAGCTGCAGCTaGATCCTCTTGCCCGGCTCA | + |
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Preference number: 5 (lower is better) Translates to: ALGRLRQVDLSYIEELSVSQSCS*ILLPGS Trigger: TGAGCCGGGCAAGAGGATCAAGCTGCAGCTCTGGGA...TACAGATAGTTCTTCTATATAGCTCAGATCCACTTGCCTCAGTCTCCCAAGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CAA 90 bp | TCTGGGGACAACTTCAAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCATCATTCCACAGTCTGTaGACAGTCTTTCAGCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: SGDNFKGSGFFPSTTRAPSFHSL*TVFQLL Trigger: AAGAAGCTGAAAGACTGTCAACAGACTGTGGAATGA...TGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CAA 90 bp | TCTGGGGACAACTTCAAGGGAAGTGGGTTCTTTCCTTCTACCACACGGGCCCCAGCTGTACATGCATTTTaGCTTCTTCTAGCCAATCTT | + |
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Preference number: 5 (lower is better) Translates to: SGDNFKGSGFFPSTTRAPAVHAF*LLLANL Trigger: AAGATTGGCTAGAAGAAGCAAAAATGCATGTACAGC...TGGGGCCCGTGTGGTAGAAGGAAAGAACCCACTTCCCTTGAAGTTGTCCCCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CAA 90 bp | GCACTTGGGAGACTGAGGCAAGTGGATCTGAGCTATATAGAAGAACTATCTGTAACGTTTGTCGCGTCCTaGGCTGAGGTCTCTATGTAC | + |
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Preference number: 5 (lower is better) Translates to: ALGRLRQVDLSYIEELSVTFVAS*AEVSMY Trigger: GTACATAGAGACCTCAGCCAAGGACGCGACAAACGT...TACAGATAGTTCTTCTATATAGCTCAGATCCACTTGCCTCAGTCTCCCAAGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS GCA 90 bp | CAGTCTGTTGACAGTCTTTCAGCTTCTTCCCTTGAAACCTGGCGTTaGGAAGCCAGGTCACATTTATGTCCCACCAGTAGAAATACAATC | + |
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Preference number: 5 (lower is better) Translates to: QSVDSLSASSLETWR*EARSHLCPTSRNTI Trigger: GATTGTATTTCTACTGGTGGGACATAAATGTGACCTGGCTTCGCAACGCCAGGTTTCAAGGGAAGAAGCTGAAAGACTGTCAACAGACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS CCA 90 bp | ATTCCACAGTCTGTTGACAGTCTTTCAGCTTCTTCCCTTGAAACCTaGCGTTGCGAAGCCAGGTCACATTTATGTCCCACCAGTAGAAAT | + |
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Preference number: 5 (lower is better) Translates to: IPQSVDSLSASSLET*RCEARSHLCPTSRN Trigger: ATTTCTACTGGTGGGACATAAATGTGACCTGGCTTCGCAACGCCAGGTTTCAAGGGAAGAAGCTGAAAGACTGTCAACAGACTGTGGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CAA 90 bp | TTTGATGCAGGGGATTGGATCTGGGTTTTCAGAGCTAAAGGAACATTCTATCACCACTCTTTTCTGGGCTaGACTGCTTCCTCAGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: FDAGDWIWVFRAKGTFYHHSFLG*TASSEE Trigger: TTCTTCTGAGGAAGCAGTCAAGCCCAGAAAAGAGTG...GTGATAGAATGTTCCTTTAGCTCTGAAAACCCAGATCCAATCCCCTGCATCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS-3UTR CAA 90 bp | AGTGAGAATGGATGTAATTTTGTAGACCCTGGTTTCAAGAGAAAAGTTGTCTCCTTTCAGCTTCTTCCCTaGAAACCTGGCGTTGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: SENGCNFVDPGFKRKVVSFQLLP*KPGVAK Trigger: CTTCGCAACGCCAGGTTTCAAGGGAAGAAGCTGAAA...GGAGACAACTTTTCTCTTGAAACCAGGGTCTACAAAATTACATCCATTCTCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS TCA 90 bp | TGCGAAGCCAGGTCACATTTATGTCCCACCAGTAGAAATACAATCTaGAAAGGCTGTACATGCATTTTTGCTTCTTCTAGCCAATCTTTC | + |
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Preference number: 5 (lower is better) Translates to: CEARSHLCPTSRNTI*KGCTCIFASSSQSF Trigger: GAAAGATTGGCTAGAAGAAGCAAAAATGCATGTACAGCCTTTTCAGATTGTATTTCTACTGGTGGGACATAAATGTGACCTGGCTTCGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS CCA 72 bp | GCCGACTGTGGGGTCGCAGGCGGGGGAGTGCAGCCCTaGGAAGCGGCCCTGGGTGAAGCGGTGCAGAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: ADCGVAGGGVQP*EAALGEAVQKA Trigger: TGCCTTCTGCACCGCTTCACCCAGGGCCGCTTCCCAGGGCTGCACTCCCCCGCCTGCGACCCCACAGTCGGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS CAA 72 bp | AAGCGGCCCTGGGTGAAGCGGTGCAGAAGGCACGACTaGCCCACCGTGGAGTCTCCGATCACAATAAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: KRPWVKRCRRHD*PTVESPITIRR Trigger: CCGCCTTATTGTGATCGGAGACTCCACGGTGGGCAAGTCGTGCCTTCTGCACCGCTTCACCCAGGGCCGCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS GCA 72 bp | GACAGTCTTTCAGCTTCTTCCCTTGAAACCTGGCGTTaGGAAGCCAGGTCACATTTATGTCCCACCAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: DSLSASSLETWR*EARSHLCPTSR Trigger: TCTACTGGTGGGACATAAATGTGACCTGGCTTCGCAACGCCAGGTTTCAAGGGAAGAAGCTGAAAGACTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS CCA 72 bp | TCTGTTGACAGTCTTTCAGCTTCTTCCCTTGAAACCTaGCGTTGCGAAGCCAGGTCACATTTATGTCCCACC | + |
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Preference number: 6 (lower is better) Translates to: SVDSLSASSLET*RCEARSHLCPT Trigger: GGTGGGACATAAATGTGACCTGGCTTCGCAACGCCAGGTTTCAAGGGAAGAAGCTGAAAGACTGTCAACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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| CDS CAA 72 bp | AGGATTGTAAAGGACTCTTCAACGTTTGTCGCGTCCTaGGCTGAGGTCTCTATGTACTTCATTCCACAGTCT | + |
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Preference number: 6 (lower is better) Translates to: RIVKDSSTFVAS*AEVSMYFIPQS Trigger: AGACTGTGGAATGAAGTACATAGAGACCTCAGCCAAGGACGCGACAAACGTTGAAGAGTCCTTTACAATCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068449.4 |
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