Pregenerated sensors for RAB38 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030559Ensembl transcript IDs: ENSMUST00000107256.4, ENSMUST00000208478.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GATTTGGCACAGCCAGAGCAGCTGACAACCTTGGGCGATGTGAGATaGGGCTTCACAATGTCCGGTTCTATAGACTCTAGGAGGTCACAC | + |
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Preference number: 1 (lower is better) Translates to: DLAQPEQLTTLGDVR*GFTMSGSIDSRRSH Trigger: GTGTGACCTCCTAGAGTCTATAGAACCGGACATTGTGAAGCCCCATCTCACATCGCCCAAGGTTGTCAGCTGCTCTGGCTGTGCCAAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| 3UTR TCA 90 bp | AATGGTTTCTATTTAATAGACCTATCAGACCACCCGGGAACAAATTaGTACCTGAACAAAGACACACCAGGGCAAGACAAATCCCCACAC | + |
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Preference number: 1 (lower is better) Translates to: NGFYLIDLSDHPGTN*YLNKDTPGQDKSPH Trigger: GTGTGGGGATTTGTCTTGCCCTGGTGTGTCTTTGTTCAGGTATCAATTTGTTCCCGGGTGGTCTGATAGGTCTATTAAATAGAAACCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR-3UTR TCA 90 bp | GTCTGTCATATGCCAGCAGAGGAGCCTTCTAGGATTTGGCACAGCCAGAGCAGCTTGCAAGTATGTGCTTaGCCAGGCATCTTGAGGCTT | + |
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Preference number: 2 (lower is better) Translates to: VCHMPAEEPSRIWHSQSSLQVCA*PGILRL Trigger: AAGCCTCAAGATGCCTGGTCAAGCACATACTTGCAA...GCTGCTCTGGCTGTGCCAAATCCTAGAAGGCTCCTCTGCTGGCATATGACAGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| 3UTR-3UTR TCA 90 bp | CCCGGGAACAAATTGATACCTGAACAAAGACACACCAGGGCAAGACAAATCCCCGGCTGTCTGTGTCCCTaGGTGGCTTTGCTCAATGAT | + |
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Preference number: 2 (lower is better) Translates to: PGNKLIPEQRHTRARQIPGCLCP*VALLND Trigger: ATCATTGAGCAAAGCCACTCAGGGACACAGACAGCC...GGGGATTTGTCTTGCCCTGGTGTGTCTTTGTTCAGGTATCAATTTGTTCCCGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR CAA 90 bp | CACACCAGGGCAAGACAAATCCCCACACTTAGCTTGACCTCTGCCTaGCTCTGTTATTCCCCTTCTCAAGAAGACCAGAAGCCTTTGTTG | + |
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Preference number: 2 (lower is better) Translates to: HTRARQIPTLSLTSA*LCYSPSQEDQKPLL Trigger: CAACAAAGGCTTCTGGTCTTCTTGAGAAGGGGAATAACAGAGCAAGGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGCCCTGGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR-3UTR TCA 90 bp | GTGACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCTGAAGAGAAACATCACTGTGCTTCCCTATCCTaGCGCTTACCCAAAATGGTA | + |
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Preference number: 2 (lower is better) Translates to: VTTKAQAACAHDSEEKHHCASLS*RLPKMV Trigger: TACCATTTTGGGTAAGCGTCAGGATAGGGAAGCACA...GTGATGTTTCTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR-3UTR GCA 90 bp | AGGGCAAGACAAATCCCCACACTTAGCTTGACCTCTGCCTTGCTCTGTTATTCCTTGGCTTGTCACATGTaGTTCCCTATCCTGACGCTT | + |
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Preference number: 2 (lower is better) Translates to: RARQIPTLSLTSALLCYSLACHM*FPILTL Trigger: AAGCGTCAGGATAGGGAAGCACATGTGACAAGCCAA...GGAATAACAGAGCAAGGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR-3UTR GCA 90 bp | CTGACAACCTTGGGCGATGTGAGATGGGGCTTCACAATGTCCGGTTCTATAGACGAGGTCACACTCATTTaGAAGTATGTGCTTGACCAG | + |
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Preference number: 2 (lower is better) Translates to: LTTLGDVRWGFTMSGSIDEVTLI*KYVLDQ Trigger: CTGGTCAAGCACATACTTGCAAATGAGTGTGACCTC...GTCTATAGAACCGGACATTGTGAAGCCCCATCTCACATCGCCCAAGGTTGTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| 3UTR-3UTR TCA 90 bp | GAACAAAGACACACCAGGGCAAGACAAATCCCCACACTTAGCTTGACCTCTGCCTTTGCTGTTCCTCTTTaGCAGGAACCATACAGTCAT | + |
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Preference number: 2 (lower is better) Translates to: EQRHTRARQIPTLSLTSAFAVPL*QEPYSH Trigger: ATGACTGTATGGTTCCTGTCAAAGAGGAACAGCAAA...GGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGCCCTGGTGTGTCTTTGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR-3UTR GCA 90 bp | GCACAGCAAGTGACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCTGAAGAGCACATAAAGAACATTTaGTGTTCCTCTTTGACAGGA | + |
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Preference number: 2 (lower is better) Translates to: AQQVTTKAQAACAHDSEEHIKNI*CSSLTG Trigger: TCCTGTCAAAGAGGAACAGCAAATGTTCTTTATGTG...CTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCACTTGCTGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR-3UTR GCA 90 bp | ACAACCTTGGGCGATGTGAGATGGGGCTTCACAATGTCCGGTTCTATAGACTCTTCATTTGCAAGTATGTaGTTGACCAGGCATCTTGAG | + |
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Preference number: 2 (lower is better) Translates to: TTLGDVRWGFTMSGSIDSSFASM*LTRHLE Trigger: CTCAAGATGCCTGGTCAAGCACATACTTGCAAATGA...AGAGTCTATAGAACCGGACATTGTGAAGCCCCATCTCACATCGCCCAAGGTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCTTGCTCTGTTATTCCCCTTCTCAAGAAGACCAGAAGCCTTTGTTGATTTAGTAATAAGGAAAAACTaGAGCACGATTCATGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: CLALLFPFSRRPEAFVDLVIRKN*STIHEG Trigger: GCCCTCATGAATCGTGCTTCAGTTTTTCCTTATTAC...TAAATCAACAAAGGCTTCTGGTCTTCTTGAGAAGGGGAATAACAGAGCAAGGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR-3UTR GCA 90 bp | CTTAGGTCTACCATGAATGGTTTCTATTTAATAGACCTATCAGACCACCCGGGAGTCCCTGAGTGGCTTTaGTCAATGATAAAACAGCAT | + |
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Preference number: 2 (lower is better) Translates to: LRSTMNGFYLIDLSDHPGVPEWL*SMIKQH Trigger: ATGCTGTTTTATCATTGAGCAAAGCCACTCAGGGAC...TCCCGGGTGGTCTGATAGGTCTATTAAATAGAAACCATTCATGGTAGACCTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR CAA 90 bp | AAAATATATATAATATATCTTCCACATACAGAAGAGTCCTGCAGCTaGAGTCAGAGGAAGCTGAAAGAAAGGCACATACAGGGAGCAGAT | + |
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Preference number: 2 (lower is better) Translates to: KIYIIYLPHTEESCS*SQRKLKERHIQGAD Trigger: ATCTGCTCCCTGTATGTGCCTTTCTTTCAGCTTCCTCTGACTCAAGCTGCAGGACTCTTCTGTATGTGGAAGATATATTATATATATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR CCA 72 bp | CAGCCAGAGCAGCTGACAACCTTGGGCGATGTGAGATaGGGCTTCACAATGTCCGGTTCTATAGACTCTAGG | + |
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Preference number: 3 (lower is better) Translates to: QPEQLTTLGDVR*GFTMSGSIDSR Trigger: CCTAGAGTCTATAGAACCGGACATTGTGAAGCCCCATCTCACATCGCCCAAGGTTGTCAGCTGCTCTGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| 3UTR-3UTR CAA 90 bp | GCCTGTGCACACGACTCTGAAGAGAAACATCACAGACAACCCTTAGGTCTACCAATCCCCACACTTAGCTaGACCTCTGCCTTGCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: ACAHDSEEKHHRQPLGLPIPTLS*TSALLC Trigger: ACAGAGCAAGGCAGAGGTCAAGCTAAGTGTGGGGAT...TGGTAGACCTAAGGGTTGTCTGTGATGTTTCTCTTCAGAGTCGTGTGCACAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR-3UTR CAA 90 bp | GGTTCTGTCTGTCATATGCCAGCAGAGGAGCCTTCTAGGATTTGGCACAGCCAGTTTGCAAGTATGTGCTaGACCAGGCATCTTGAGGCT | + |
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Preference number: 3 (lower is better) Translates to: GSVCHMPAEEPSRIWHSQFASMC*TRHLEA Trigger: AGCCTCAAGATGCCTGGTCAAGCACATACTTGCAAA...CTGGCTGTGCCAAATCCTAGAAGGCTCCTCTGCTGGCATATGACAGACAGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| 3UTR TCA 72 bp | GACACACCAGGGCAAGACAAATCCCCACACTTAGCTTaGCCTCTGCCTTGCTCTGTTATTCCCCTTCTCAAG | + |
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Preference number: 3 (lower is better) Translates to: DTPGQDKSPHLA*PLPCSVIPLLK Trigger: CTTGAGAAGGGGAATAACAGAGCAAGGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGCCCTGGTGTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR TCA 72 bp | GACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCTaGAGAGAAACATCACAGACAACCCTTAGGTCTACC | + |
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Preference number: 3 (lower is better) Translates to: DNKSPGCLCTRL*RETSQTTLRST Trigger: GGTAGACCTAAGGGTTGTCTGTGATGTTTCTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR TCA 72 bp | AGTTTTCAGTTAAACCAGCATTCAGGGCACAGCAAGTaGCAACAAAAGCCCAGGCTGCCTGTGCACACGACT | + |
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Preference number: 3 (lower is better) Translates to: SFQLNQHSGHSK*QQKPRLPVHTT Trigger: AGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCACTTGCTGTGCCCTGAATGCTGGTTTAACTGAAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR-3UTR CAA 90 bp | CTTAGGTCTACCATGAATGGTTTCTATTTAATAGACCTATCAGACCACCCGGGAAGCTTGACCTCTGCCTaGCTCTGTTATTCCCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: LRSTMNGFYLIDLSDHPGSLTSA*LCYSPS Trigger: AGAAGGGGAATAACAGAGCAAGGCAGAGGTCAAGCT...TCCCGGGTGGTCTGATAGGTCTATTAAATAGAAACCATTCATGGTAGACCTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR GCA 72 bp | GAACCATACAGTCATGTATCTTTGGCTTGTCACATGTaGTTCCCTATCCTGACGCTTACCCAAAATGGTAAT | + |
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Preference number: 3 (lower is better) Translates to: EPYSHVSLACHM*FPILTLTQNGN Trigger: ATTACCATTTTGGGTAAGCGTCAGGATAGGGAAGCACATGTGACAAGCCAAAGATACATGACTGTATGGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR TCA 72 bp | TATTTAATAGACCTATCAGACCACCCGGGAACAAATTaGTACCTGAACAAAGACACACCAGGGCAAGACAAA | + |
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Preference number: 3 (lower is better) Translates to: YLIDLSDHPGTN*YLNKDTPGQDK Trigger: TTTGTCTTGCCCTGGTGTGTCTTTGTTCAGGTATCAATTTGTTCCCGGGTGGTCTGATAGGTCTATTAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR GCA 72 bp | ATATATATAATATATCTTCCACATACAGAAGAGTCCTaGAGCTTGAGTCAGAGGAAGCTGAAAGAAAGGCAC | + |
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Preference number: 3 (lower is better) Translates to: IYIIYLPHTEES*SLSQRKLKERH Trigger: GTGCCTTTCTTTCAGCTTCCTCTGACTCAAGCTGCAGGACTCTTCTGTATGTGGAAGATATATTATATATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CCA 90 bp | GTCTGTCATATGCCAGCAGAGGAGCCTTCTAGGATTTGGCACAGCCAGAGCAGCGTCTCTGGGTCCCAGTaGAGCACCTTCAGCGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: VCHMPAEEPSRIWHSQSSVSGSQ*STFSAK Trigger: CTTCGCGCTGAAGGTGCTCCACTGGGACCCAGAGAC...GCTGCTCTGGCTGTGCCAAATCCTAGAAGGCTCCTCTGCTGGCATATGACAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| CDS-3UTR CCA 90 bp | GTGACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCTGAAGAGAAACATCACGTCTCTGGGTCCCAGTaGAGCACCTTCAGCGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: VTTKAQAACAHDSEEKHHVSGSQ*STFSAK Trigger: CTTCGCGCTGAAGGTGCTCCACTGGGACCCAGAGAC...GTGATGTTTCTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CCA 90 bp | ACAACCTTGGGCGATGTGAGATGGGGCTTCACAATGTCCGGTTCTATAGACTCTGCGCACCACCGTCTCTaGGTCCCAGTGGAGCACCTT | + |
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Preference number: 4 (lower is better) Translates to: TTLGDVRWGFTMSGSIDSAHHRL*VPVEHL Trigger: AAGGTGCTCCACTGGGACCCAGAGACGGTGGTGCGC...AGAGTCTATAGAACCGGACATTGTGAAGCCCCATCTCACATCGCCCAAGGTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| CDS-3UTR TCA 90 bp | ATTCAGGGCACAGCAAGTGACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCTTGCAAGTATGTGCTTaGCCAGGCATCTTGAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: IQGTASDNKSPGCLCTRLLQVCA*PGILRL Trigger: AAGCCTCAAGATGCCTGGTCAAGCACATACTTGCAA...GAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCACTTGCTGTGCCCTGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CCA 90 bp | ACAGGAACCATACAGTCATGTATCTTTGGCTTGTCACATGTGCTTCCCTATCCTGCGCACCACCGTCTCTaGGTCCCAGTGGAGCACCTT | + |
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Preference number: 4 (lower is better) Translates to: TGTIQSCIFGLSHVLPYPAHHRL*VPVEHL Trigger: AAGGTGCTCCACTGGGACCCAGAGACGGTGGTGCGC...AGGATAGGGAAGCACATGTGACAAGCCAAAGATACATGACTGTATGGTTCCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR TCA 90 bp | ATTCAGGGCACAGCAAGTGACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCCTTGACCAGGCATCTTaGGGCTTCATCAATGTTTAT | + |
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Preference number: 4 (lower is better) Translates to: IQGTASDNKSPGCLCTRLLDQAS*GFINVY Trigger: ATAAACATTGATGAAGCCTCAAGATGCCTGGTCAAG...GAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCACTTGCTGTGCCCTGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CCA 90 bp | GAACAAAGACACACCAGGGCAAGACAAATCCCCACACTTAGCTTGACCTCTGCCTGCTCCTTGCAGAACTaGTCCATCTTGAGTCCATTG | + |
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Preference number: 4 (lower is better) Translates to: EQRHTRARQIPTLSLTSACSLQN*SILSPL Trigger: CAATGGACTCAAGATGGACCAGTTCTGCAAGGAGCA...GGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGCCCTGGTGTGTCTTTGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR CAA 72 bp | AGACACACCAGGGCAAGACAAATCCCCACACTTAGCTaGACCTCTGCCTTGCTCTGTTATTCCCCTTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: RHTRARQIPTLS*TSALLCYSPSQ Trigger: TTGAGAAGGGGAATAACAGAGCAAGGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGCCCTGGTGTGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR GCA 90 bp | GTGACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCTGAAGAGAAACATCACGAGGTCACACTCATTTaGAAGTATGTGCTTGACCAG | + |
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Preference number: 4 (lower is better) Translates to: VTTKAQAACAHDSEEKHHEVTLI*KYVLDQ Trigger: CTGGTCAAGCACATACTTGCAAATGAGTGTGACCTC...GTGATGTTTCTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR CAA 72 bp | GCAAGACAAATCCCCACACTTAGCTTGACCTCTGCCTaGCTCTGTTATTCCCCTTCTCAAGAAGACCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: ARQIPTLSLTSA*LCYSPSQEDQK Trigger: CTTCTGGTCTTCTTGAGAAGGGGAATAACAGAGCAAGGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR TCA 90 bp | ACAGGAACCATACAGTCATGTATCTTTGGCTTGTCACATGTGCTTCCCTATCCTCAACCTTGGGCGATGTaGGATGGGGCTTCACAATGT | + |
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Preference number: 4 (lower is better) Translates to: TGTIQSCIFGLSHVLPYPQPWAM*DGASQC Trigger: ACATTGTGAAGCCCCATCTCACATCGCCCAAGGTTG...AGGATAGGGAAGCACATGTGACAAGCCAAAGATACATGACTGTATGGTTCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR GCA 90 bp | CCACGGGTTCTGTCTGTCATATGCCAGCAGAGGAGCCTTCTAGGATTTGGCACAATCAAAAACAATAAATaGCCCCATAGCTTCCCGGTA | + |
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Preference number: 4 (lower is better) Translates to: PRVLSVICQQRSLLGFGTIKNNK*PHSFPV Trigger: TACCGGGAAGCTATGGGGGCATTTATTGTTTTTGAT...TGTGCCAAATCCTAGAAGGCTCCTCTGCTGGCATATGACAGACAGAACCCGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| CDS-3UTR GCA 90 bp | TGCCTTGCTCTGTTATTCCCCTTCTCAAGAAGACCAGAAGCCTTTGTTGATTTACATCCTACGAAGCCATaGTCCTTGCAGAACTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: CLALLFPFSRRPEAFVDLHPTKP*SLQNWS Trigger: GGACCAGTTCTGCAAGGAGCATGGCTTCGTAGGATG...TAAATCAACAAAGGCTTCTGGTCTTCTTGAGAAGGGGAATAACAGAGCAAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR GCA 90 bp | AGGGCAAGACAAATCCCCACACTTAGCTTGACCTCTGCCTTGCTCTGTTATTCCATCAAAAACAATAAATaGCCCCATAGCTTCCCGGTA | + |
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Preference number: 4 (lower is better) Translates to: RARQIPTLSLTSALLCYSIKNNK*PHSFPV Trigger: TACCGGGAAGCTATGGGGGCATTTATTGTTTTTGAT...GGAATAACAGAGCAAGGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR CAA 72 bp | TCTTTGACAGGAACCATACAGTCATGTATCTTTGGCTaGTCACATGTGCTTCCCTATCCTGACGCTTACCCA | + |
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Preference number: 4 (lower is better) Translates to: SLTGTIQSCIFG*SHVLPYPDAYP Trigger: TGGGTAAGCGTCAGGATAGGGAAGCACATGTGACAAGCCAAAGATACATGACTGTATGGTTCCTGTCAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR TCA 90 bp | ACAGGAACCATACAGTCATGTATCTTTGGCTTGTCACATGTGCTTCCCTATCCTTTTCCAAATCTTTCTTaGCCAGCAATGTCCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: TGTIQSCIFGLSHVLPYPFPNLS*PAMSQS Trigger: GCTCTGGGACATTGCTGGTCAAGAAAGATTTGGAAA...AGGATAGGGAAGCACATGTGACAAGCCAAAGATACATGACTGTATGGTTCCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR TCA 90 bp | ATGTCCGGTTCTATAGACTCTAGGAGGTCACACTCATTTGCAAGTATGTGCTTGTTTCCAAATCTTTCTTaGCCAGCAATGTCCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: MSGSIDSRRSHSFASMCLFPNLS*PAMSQS Trigger: GCTCTGGGACATTGCTGGTCAAGAAAGATTTGGAAA...CAAGCACATACTTGCAAATGAGTGTGACCTCCTAGAGTCTATAGAACCGGACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| CDS-3UTR GCA 90 bp | GAACCATACAGTCATGTATCTTTGGCTTGTCACATGTGCTTCCCTATCCTGACGTCATTTGCAAGTATGTaGTTGACCAGGCATCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: EPYSHVSLACHMCFPILTSFASM*LTRHLE Trigger: CTCAAGATGCCTGGTCAAGCACATACTTGCAAATGA...CGTCAGGATAGGGAAGCACATGTGACAAGCCAAAGATACATGACTGTATGGTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CCA 90 bp | TGCCTTGCTCTGTTATTCCCCTTCTCAAGAAGACCAGAAGCCTTTGTTGATTTAAGCACATCCTTCCCTTaGTCACATTTGTTGGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: CLALLFPFSRRPEAFVDLSTSFP*SHLLAN Trigger: GTTGGCCAACAAATGTGACCAAGGGAAGGATGTGCT...TAAATCAACAAAGGCTTCTGGTCTTCTTGAGAAGGGGAATAACAGAGCAAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CCA 90 bp | CTTAGGTCTACCATGAATGGTTTCTATTTAATAGACCTATCAGACCACCCGGGAGGCTTCAAATGTGGCTaGTCTGGTGACATCAAAAAC | + |
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Preference number: 4 (lower is better) Translates to: LRSTMNGFYLIDLSDHPGGFKCG*SGDIKN Trigger: GTTTTTGATGTCACCAGACCAGCCACATTTGAAGCC...TCCCGGGTGGTCTGATAGGTCTATTAAATAGAAACCATTCATGGTAGACCTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| 3UTR CAA 72 bp | ATAATATATCTTCCACATACAGAAGAGTCCTGCAGCTaGAGTCAGAGGAAGCTGAAAGAAAGGCACATACAG | + |
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Preference number: 4 (lower is better) Translates to: IIYLPHTEESCS*SQRKLKERHIQ Trigger: CTGTATGTGCCTTTCTTTCAGCTTCCTCTGACTCAAGCTGCAGGACTCTTCTGTATGTGGAAGATATATTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | ATTCAGGGCACAGCAAGTGACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCTTGATAATGCTGGTCTaGCCCACACCCAGGTCGCCG | + |
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Preference number: 5 (lower is better) Translates to: IQGTASDNKSPGCLCTRLLIMLV*PTPRSP Trigger: CGGCGACCTGGGTGTGGGCAAGACCAGCATTATCAA...GAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCACTTGCTGTGCCCTGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | CTGACAACCTTGGGCGATGTGAGATGGGGCTTCACAATGTCCGGTTCTATAGACTTGATAATGCTGGTCTaGCCCACACCCAGGTCGCCG | + |
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Preference number: 5 (lower is better) Translates to: LTTLGDVRWGFTMSGSIDLIMLV*PTPRSP Trigger: CGGCGACCTGGGTGTGGGCAAGACCAGCATTATCAA...GTCTATAGAACCGGACATTGTGAAGCCCCATCTCACATCGCCCAAGGTTGTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| CDS-3UTR CAA 90 bp | CCCGGGAACAAATTGATACCTGAACAAAGACACACCAGGGCAAGACAAATCCCCGAGCAGCTGACAACCTaGGGCGATGTGAGATGGGGC | + |
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Preference number: 5 (lower is better) Translates to: PGNKLIPEQRHTRARQIPEQLTT*GDVRWG Trigger: GCCCCATCTCACATCGCCCAAGGTTGTCAGCTGCTC...GGGGATTTGTCTTGCCCTGGTGTGTCTTTGTTCAGGTATCAATTTGTTCCCGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | GTGACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCTGAAGAGAAACATCACACGAAGCCATGCTCCTaGCAGAACTGGTCCATCTTG | + |
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Preference number: 5 (lower is better) Translates to: VTTKAQAACAHDSEEKHHTKPCS*QNWSIL Trigger: CAAGATGGACCAGTTCTGCAAGGAGCATGGCTTCGT...GTGATGTTTCTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | GCACAGCAAGTGACAACAAAAGCCCAGGCTGCCTGTGCACACGACTCTGAAGAGTTTGCAAGTATGTGCTaGACCAGGCATCTTGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: AQQVTTKAQAACAHDSEEFASMC*TRHLEA Trigger: AGCCTCAAGATGCCTGGTCAAGCACATACTTGCAAA...CTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCACTTGCTGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | TTGGGCGATGTGAGATGGGGCTTCACAATGTCCGGTTCTATAGACTCTAGGAGGGTGCGAGGAGAAGTTTaGGTGCACATAGCGCTTGAT | + |
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Preference number: 5 (lower is better) Translates to: LGDVRWGFTMSGSIDSRRVRGEV*VHIALD Trigger: ATCAAGCGCTATGTGCACCAAAACTTCTCCTCGCAC...CCTCCTAGAGTCTATAGAACCGGACATTGTGAAGCCCCATCTCACATCGCCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| CDS-3UTR CAA 90 bp | AAAGCCCAGGCTGCCTGTGCACACGACTCTGAAGAGAAACATCACAGACAACCCCAGAACTGGTCCATCTaGAGTCCATTGTTCATAAGC | + |
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Preference number: 5 (lower is better) Translates to: KAQAACAHDSEEKHHRQPQNWSI*SPLFIS Trigger: GCTTATGAACAATGGACTCAAGATGGACCAGTTCTG...GGGTTGTCTGTGATGTTTCTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | GAACAAAGACACACCAGGGCAAGACAAATCCCCACACTTAGCTTGACCTCTGCCGTTTCCAAATCTTTCTaGACCAGCAATGTCCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: EQRHTRARQIPTLSLTSAVSKSF*TSNVPE Trigger: CTCTGGGACATTGCTGGTCAAGAAAGATTTGGAAAC...GGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGCCCTGGTGTGTCTTTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | AAAGCCCAGGCTGCCTGTGCACACGACTCTGAAGAGAAACATCACAGACAACCCTCCATCTTGAGTCCATaGTTCATAAGCACATCCTTC | + |
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Preference number: 5 (lower is better) Translates to: KAQAACAHDSEEKHHRQPSILSP*FISTSF Trigger: GAAGGATGTGCTTATGAACAATGGACTCAAGATGGA...GGGTTGTCTGTGATGTTTCTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | GTCTGTCATATGCCAGCAGAGGAGCCTTCTAGGATTTGGCACAGCCAGAGCAGCCCCGGTAATAAACTCTaGTCATGTTTCCAAATCTTT | + |
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Preference number: 5 (lower is better) Translates to: VCHMPAEEPSRIWHSQSSPGNKL*SCFQIF Trigger: AAAGATTTGGAAACATGACAAGAGTTTATTACCGGG...GCTGCTCTGGCTGTGCCAAATCCTAGAAGGCTCCTCTGCTGGCATATGACAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208478.2 |
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| CDS-3UTR CAA 90 bp | ACAGGAACCATACAGTCATGTATCTTTGGCTTGTCACATGTGCTTCCCTATCCTGTGCGAGGAGAAGTTTaGGTGCACATAGCGCTTGAT | + |
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Preference number: 5 (lower is better) Translates to: TGTIQSCIFGLSHVLPYPVRGEV*VHIALD Trigger: ATCAAGCGCTATGTGCACCAAAACTTCTCCTCGCAC...AGGATAGGGAAGCACATGTGACAAGCCAAAGATACATGACTGTATGGTTCCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | ACAGGAACCATACAGTCATGTATCTTTGGCTTGTCACATGTGCTTCCCTATCCTAAGCACATCCTTCCCTaGGTCACATTTGTTGGCCAA | + |
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Preference number: 5 (lower is better) Translates to: TGTIQSCIFGLSHVLPYPKHILP*VTFVGQ Trigger: TTGGCCAACAAATGTGACCAAGGGAAGGATGTGCTT...AGGATAGGGAAGCACATGTGACAAGCCAAAGATACATGACTGTATGGTTCCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS GCA 90 bp | TCCGGTTCTATAGACTCTAGGAGGTCACACTCATTTGCAAGTATGTaGTTGACCAGGCATCTTGAGGCTTCATCAATGTTTATGTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: SGSIDSRRSHSFASM*LTRHLEASSMFMFS Trigger: GGAAAACATAAACATTGATGAAGCCTCAAGATGCCTGGTCAAGCACATACTTGCAAATGAGTGTGACCTCCTAGAGTCTATAGAACCGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS-3UTR CAA 90 bp | ACAGGAACCATACAGTCATGTATCTTTGGCTTGTCACATGTGCTTCCCTATCCTCCCGGTAATAAACTCTaGTCATGTTTCCAAATCTTT | + |
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Preference number: 5 (lower is better) Translates to: TGTIQSCIFGLSHVLPYPPGNKL*SCFQIF Trigger: AAAGATTTGGAAACATGACAAGAGTTTATTACCGGG...AGGATAGGGAAGCACATGTGACAAGCCAAAGATACATGACTGTATGGTTCCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS CAA 72 bp | GACTCTAGGAGGTCACACTCATTTGCAAGTATGTGCTaGACCAGGCATCTTGAGGCTTCATCAATGTTTATG | + |
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Preference number: 6 (lower is better) Translates to: DSRRSHSFASMC*TRHLEASSMFM Trigger: CATAAACATTGATGAAGCCTCAAGATGCCTGGTCAAGCACATACTTGCAAATGAGTGTGACCTCCTAGAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS TCA 72 bp | ACTCTAGGAGGTCACACTCATTTGCAAGTATGTGCTTaGCCAGGCATCTTGAGGCTTCATCAATGTTTATGT | + |
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Preference number: 6 (lower is better) Translates to: TLGGHTHLQVCA*PGILRLHQCLC Trigger: ACATAAACATTGATGAAGCCTCAAGATGCCTGGTCAAGCACATACTTGCAAATGAGTGTGACCTCCTAGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS GCA 72 bp | ATAGACTCTAGGAGGTCACACTCATTTGCAAGTATGTaGTTGACCAGGCATCTTGAGGCTTCATCAATGTTT | + |
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Preference number: 6 (lower is better) Translates to: IDSRRSHSFASM*LTRHLEASSMF Trigger: AAACATTGATGAAGCCTCAAGATGCCTGGTCAAGCACATACTTGCAAATGAGTGTGACCTCCTAGAGTCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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| CDS CAA 90 bp | GGTTCTATAGACTCTAGGAGGTCACACTCATTTGCAAGTATGTGCTaGACCAGGCATCTTGAGGCTTCATCAATGTTTATGTTTTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: GSIDSRRSHSFASMC*TRHLEASSMFMFSL Trigger: CAAGGAAAACATAAACATTGATGAAGCCTCAAGATGCCTGGTCAAGCACATACTTGCAAATGAGTGTGACCTCCTAGAGTCTATAGAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107256.4 |
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