Pregenerated sensors for RAB33B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027739Ensembl transcript IDs: ENSMUST00000054387.8, ENSMUST00000192172.2
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTGCGGCTCGCTCCAGCTGCTCTGCATGTGTGCACTACCCAGCATaGCTTCTGCTGCTCCAGGGACCCAGAGAGGAAGAGGACCAACCA | + |
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Preference number: 1 (lower is better) Translates to: LAARSSCSACVHYPA*LLLLQGPREEEDQP Trigger: TGGTTGGTCCTCTTCCTCTCTGGGTCCCTGGAGCAGCAGAAGCCATGCTGGGTAGTGCACACATGCAGAGCAGCTGGAGCGAGCCGCAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR GCA 90 bp | AAGCACCCTATTAGCTTGCGGCTCGCTCCAGCTGCTCTGCATGTGTaGACTACCCAGCATGGCTTCTGCTGCTCCAGGGACCCAGAGAGG | + |
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Preference number: 1 (lower is better) Translates to: KHPISLRLAPAALHV*TTQHGFCCSRDPER Trigger: CCTCTCTGGGTCCCTGGAGCAGCAGAAGCCATGCTGGGTAGTGCACACATGCAGAGCAGCTGGAGCGAGCCGCAAGCTAATAGGGTGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR GCA 90 bp | GCTCCAGCTGCTCTGCATGTGTGCACTACCCAGCATGGCTTCTGCTaGTCCAGGGACCCAGAGAGGAAGAGGACCAACCATTTAAGGTCC | + |
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Preference number: 1 (lower is better) Translates to: APAALHVCTTQHGFC*SRDPERKRTNHLRS Trigger: GGACCTTAAATGGTTGGTCCTCTTCCTCTCTGGGTCCCTGGAGCAGCAGAAGCCATGCTGGGTAGTGCACACATGCAGAGCAGCTGGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR GCA 90 bp | CTCGCTCCAGCTGCTCTGCATGTGTGCACTACCCAGCATGGCTTCTaGTGCTCCAGGGACCCAGAGAGGAAGAGGACCAACCATTTAAGG | + |
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Preference number: 1 (lower is better) Translates to: LAPAALHVCTTQHGF*CSRDPERKRTNHLR Trigger: CCTTAAATGGTTGGTCCTCTTCCTCTCTGGGTCCCTGGAGCAGCAGAAGCCATGCTGGGTAGTGCACACATGCAGAGCAGCTGGAGCGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR GCA 90 bp | TGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCAGGTaGTCTTACCCACTGAGCCATCTCACCAGCCCCAGATTTGGGATT | + |
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Preference number: 1 (lower is better) Translates to: WLLGFELWTFGRAVR*SYPLSHLTSPRFGI Trigger: AATCCCAAATCTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 90 bp | ATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTCGGAAGAGCAGTCAGGTGCTCTTACCCACT | + |
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Preference number: 1 (lower is better) Translates to: ISLRMVVSHHVVAGI*TLDLRKSSQVLLPT Trigger: AGTGGGTAAGAGCACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CCA 90 bp | GAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCAGGTGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: ESDLVTDGCEPPCGC*DLNSGPSEEQSGAL Trigger: AAGAGCACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR GCA 90 bp | AGAACGTGGAAGAACAATGACCAGATGTTCCTCCGTACAAACATCTaGAGCCACCCGTCACTACCGCCATTTTGTGTCACCAGGAAAACA | + |
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Preference number: 1 (lower is better) Translates to: RTWKNNDQMFLRTNI*SHPSLPPFCVTRKT Trigger: TGTTTTCCTGGTGACACAAAATGGCGGTAGTGACGGGTGGCTGCAGATGTTTGTACGGAGGAACATCTGGTCATTGTTCTTCCACGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 90 bp | AATTACAGGAACATACATACAGAACCCAGCCAAATGGATGCTGACTaGAATCAGCTCCGAGTCACCCAACTGACTGTGACTGGGAACAGA | + |
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Preference number: 1 (lower is better) Translates to: NYRNIHTEPSQMDAD*NQLRVTQLTVTGNR Trigger: TCTGTTCCCAGTCACAGTCAGTTGGGTGACTCGGAGCTGATTTCAGTCAGCATCCATTTGGCTGGGTTCTGTATGTATGTTCCTGTAATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 90 bp | ATACAATTACAGGAACATACATACAGAACCCAGCCAAATGGATGCTaGCTGAAATCAGCTCCGAGTCACCCAACTGACTGTGACTGGGAA | + |
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Preference number: 1 (lower is better) Translates to: IQLQEHTYRTQPNGC*LKSAPSHPTDCDWE Trigger: TTCCCAGTCACAGTCAGTTGGGTGACTCGGAGCTGATTTCAGTCAGCATCCATTTGGCTGGGTTCTGTATGTATGTTCCTGTAATTGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 90 bp | TCAACCCAGAAAACCAAAGAAAGAAACGCTTCCTCGTGGCAAAGATaGTTTATTGTACGTTATGGGAGAAGTGTTAAAGGTGGCGCTGTT | + |
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Preference number: 1 (lower is better) Translates to: STQKTKERNASSWQR*FIVRYGRSVKGGAV Trigger: AACAGCGCCACCTTTAACACTTCTCCCATAACGTACAATAAATCATCTTTGCCACGAGGAAGCGTTTCTTTCTTTGGTTTTCTGGGTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 90 bp | GTGACTGGGAACAGAGGACAAGGGGCACCAGAATATTTGATATTCTaGTTAAATGTCATGGCTAAAGTAAACTCCTGTTACAACTGCTTG | + |
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Preference number: 1 (lower is better) Translates to: VTGNRGQGAPEYLIF*LNVMAKVNSCYNCL Trigger: CAAGCAGTTGTAACAGGAGTTTACTTTAGCCATGACATTTAATCAGAATATCAAATATTCTGGTGCCCCTTGTCCTCTGTTCCCAGTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGCTGGAGGAAGAGGCAGGTCGGTATCTGTAAGTCTGAGGCCACCCCTGTCCTCGCTCCAGCTGCTCTaGATGTGTGCACTACCCAGC | + |
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Preference number: 2 (lower is better) Translates to: AAGGRGRSVSVSLRPPLSSLQLL*MCALPS Trigger: GCTGGGTAGTGCACACATGCAGAGCAGCTGGAGCGA...GGACAGGGGTGGCCTCAGACTTACAGATACCGACCTGCCTCTTCCTCCAGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR CCA 90 bp | GTCCTGGTGACAGAAGCCTTTAACTCCCAGCAGCTGGAGGAAGAGGCAGGTCGGGCTTCTGGCTGGAGCTaGAAAGATGGCCCCGGTAGT | + |
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Preference number: 2 (lower is better) Translates to: VLVTEAFNSQQLEEEAGRASGWS*KDGPGS Trigger: ACTACCGGGGCCATCTTTCCAGCTCCAGCCAGAAGC...CCGACCTGCCTCTTCCTCCAGCTGCTGGGAGTTAAAGGCTTCTGTCACCAGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CAA 90 bp | CCCAGAGAGGAAGAGGACCAACCATTTAAGGTCCATCATGCTCACTaGAAGCTGCTGCTTCTGGCTGGAGCTGGAAAGATGGCCCCGGTA | + |
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Preference number: 2 (lower is better) Translates to: PREEEDQPFKVHHAH*KLLLLAGAGKMAPV Trigger: TACCGGGGCCATCTTTCCAGCTCCAGCCAGAAGCAGCAGCTTCAAGTGAGCATGATGGACCTTAAATGGTTGGTCCTCTTCCTCTCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CAA 90 bp | GATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTCGGAAGAGCAGTCAGGTGCTCTTACCCAC | + |
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Preference number: 2 (lower is better) Translates to: DLVTDGCEPPCGCWD*NSGPSEEQSGALTH Trigger: GTGGGTAAGAGCACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR GCA 90 bp | AAGAAACGCTTCCTCGTGGCAAAGATGATTTATTGTACGTTATGGGAGAAGTGTCAGCATGGCTTCTGCTaGTCCAGGGACCCAGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: KKRFLVAKMIYCTLWEKCQHGFC*SRDPER Trigger: CCTCTCTGGGTCCCTGGAGCAGCAGAAGCCATGCTG...ACACTTCTCCCATAACGTACAATAAATCATCTTTGCCACGAGGAAGCGTTTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR CCA 90 bp | TCTGTACTGAAACAGTCCAGAAGAAAACCACAGAGGTACTTAGAGAACAGATCAGCTGCTGCTTCTGGCTaGAGCTGGAAAGATGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: SVLKQSRRKPQRYLENRSAAASG*SWKDGP Trigger: GGGGCCATCTTTCCAGCTCCAGCCAGAAGCAGCAGC...TGATCTGTTCTCTAAGTACCTCTGTGGTTTTCTTCTGGACTGTTTCAGTACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CAA 90 bp | GTTCCTCCGTACAAACATCTGCAGCCACCCGTCACTACCGCCATTTaGTGTCACCAGGAAAACAGTTCACAAGTCAGCATTCATTTAGAC | + |
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Preference number: 2 (lower is better) Translates to: VPPYKHLQPPVTTAI*CHQENSSQVSIHLD Trigger: GTCTAAATGAATGCTGACTTGTGAACTGTTTTCCTGGTGACACAAAATGGCGGTAGTGACGGGTGGCTGCAGATGTTTGTACGGAGGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR CCA 90 bp | TCTGTACTGAAACAGTCCAGAAGAAAACCACAGAGGTACTTAGAGAACAGATCAGTGCACTACCCAGCATaGCTTCTGCTGCTCCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: SVLKQSRRKPQRYLENRSVHYPA*LLLLQG Trigger: TCCCTGGAGCAGCAGAAGCCATGCTGGGTAGTGCAC...TGATCTGTTCTCTAAGTACCTCTGTGGTTTTCTTCTGGACTGTTTCAGTACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR CCA 90 bp | ATGGGAGAAGTGTTAAAGGTGGCGCTGTTTCACAGCAAAACTATCATCCTTGTTCCAACTGACTGTGACTaGGAACAGAGGACAAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: MGEVLKVALFHSKTIILVPTDCD*EQRTRG Trigger: GCCCCTTGTCCTCTGTTCCCAGTCACAGTCAGTTGG...AACAAGGATGATAGTTTTGCTGTGAAACAGCGCCACCTTTAACACTTCTCCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR GCA 90 bp | TTACACACCACTCTGCTAAGACCTTCATATGTAAACGTGCTATTTCCTTTGTGCGCGGCCTTTTCCATGTaGTGTCTCAGTGACAAACTT | + |
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Preference number: 2 (lower is better) Translates to: LHTTLLRPSYVNVLFPLCAAFSM*CLSDKL Trigger: AAGTTTGTCACTGAGACAGCACATGGAAAAGGCCGC...GCACAAAGGAAATAGCACGTTTACATATGAAGGTCTTAGCAGAGTGGTGTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR TCA 90 bp | AGGAACCAAAGAAAGATCTTTCTAACTACAAAGAAAGCCAATCTGGGTCCTAATCAGCCAAATGGATGCTaGCTGAAATCAGCTCCGAGT | + |
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Preference number: 2 (lower is better) Translates to: RNQRKIFLTTKKANLGPNQPNGC*LKSAPS Trigger: ACTCGGAGCTGATTTCAGTCAGCATCCATTTGGCTG...ATTAGGACCCAGATTGGCTTTCTTTGTAGTTAGAAAGATCTTTCTTTGGTTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR GCA 90 bp | TCTGTACTGAAACAGTCCAGAAGAAAACCACAGAGGTACTTAGAGAACAGATCAAAAATTGGCAAGGGTTaGAAGCTGTCACAAAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: SVLKQSRRKPQRYLENRSKIGKG*KLSQRG Trigger: TCCTCTTTGTGACAGCTTGCAACCCTTGCCAATTTT...TGATCTGTTCTCTAAGTACCTCTGTGGTTTTCTTCTGGACTGTTTCAGTACAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR TCA 90 bp | TCTGTACTGAAACAGTCCAGAAGAAAACCACAGAGGTACTTAGAGAACAGATCATTTTGCTTTCATAAATaGACTGTCCAGTTGGGACCA | + |
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Preference number: 2 (lower is better) Translates to: SVLKQSRRKPQRYLENRSFCFHK*TVQLGP Trigger: TGGTCCCAACTGGACAGTTCATTTATGAAAGCAAAA...TGATCTGTTCTCTAAGTACCTCTGTGGTTTTCTTCTGGACTGTTTCAGTACAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR CCA 90 bp | CTGCTAAGACCTTCATATGTAAACGTGCTATTTCCTTTGTGCAAAGTTTTAAACCAGAACCCAGCCAAATaGATGCTGACTGAAATCAGC | + |
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Preference number: 2 (lower is better) Translates to: LLRPSYVNVLFPLCKVLNQNPAK*MLTEIS Trigger: GCTGATTTCAGTCAGCATCCATTTGGCTGGGTTCTG...GTTTAAAACTTTGCACAAAGGAAATAGCACGTTTACATATGAAGGTCTTAGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CAA 90 bp | CACACCACTCTGCTAAGACCTTCATATGTAAACGTGCTATTTCCTTaGTGCAAAGTTTTAAACTCAAACTACAAGTACTTAGGGCAAAAA | + |
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Preference number: 2 (lower is better) Translates to: HTTLLRPSYVNVLFP*CKVLNSNYKYLGQK Trigger: TTTTTGCCCTAAGTACTTGTAGTTTGAGTTTAAAACTTTGCACAAAGGAAATAGCACGTTTACATATGAAGGTCTTAGCAGAGTGGTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CCA 72 bp | CGCTCCAGCTGCTCTGCATGTGTGCACTACCCAGCATaGCTTCTGCTGCTCCAGGGACCCAGAGAGGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: RSSCSACVHYPA*LLLLQGPREEE Trigger: CTCTTCCTCTCTGGGTCCCTGGAGCAGCAGAAGCCATGCTGGGTAGTGCACACATGCAGAGCAGCTGGAGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR GCA 72 bp | AGCACCCTATTAGCTTGCGGCTCGCTCCAGCTGCTCTaGATGTGTGCACTACCCAGCATGGCTTCTGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: STLLACGSLQLL*MCALPSMASAA Trigger: AGCAGCAGAAGCCATGCTGGGTAGTGCACACATGCAGAGCAGCTGGAGCGAGCCGCAAGCTAATAGGGTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 72 bp | CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTCGGAAGAGCAGTCAGGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: RMVVSHHVVAGI*TLDLRKSSQVL Trigger: GAGCACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR GCA 72 bp | GGATTTGAACTCTGGACCTTCGGAAGAGCAGTCAGGTaGTCTTACCCACTGAGCCATCTCACCAGCCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: GFELWTFGRAVR*SYPLSHLTSPR Trigger: TCTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR GCA 72 bp | GATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCTGGACCTTCGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DLVTDGCEPPCG*WDLNSGPSEEQ Trigger: CTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CCA 72 bp | CTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: LVTDGCEPPCGC*DLNSGPSEEQS Trigger: TGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR CAA 90 bp | AGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATGTCACTACCGCCATTTaGTGTCACCAGGAAAACAGT | + |
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Preference number: 3 (lower is better) Translates to: RESDLVTDGCEPPCGCWDVTTAI*CHQENS Trigger: ACTGTTTTCCTGGTGACACAAAATGGCGGTAGTGAC...ATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 72 bp | TGCAAGCTGTCACAAAGAGGATGTGCGGACTTAGGCTaGGCACAGCTTACACACCACTCTGCTAAGACCTTC | + |
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Preference number: 3 (lower is better) Translates to: CKLSQRGCADLG*AQLTHHSAKTF Trigger: GAAGGTCTTAGCAGAGTGGTGTGTAAGCTGTGCTCAGCCTAAGTCCGCACATCCTCTTTGTGACAGCTTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 72 bp | AAGAGGACCAACCATTTAAGGTCCATCATGCTCACTTaGAGCTGCTGCTTCTGGCTGGAGCTGGAAAGATGG | + |
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Preference number: 3 (lower is better) Translates to: KRTNHLRSIMLT*SCCFWLELERW Trigger: CCATCTTTCCAGCTCCAGCCAGAAGCAGCAGCTTCAAGTGAGCATGATGGACCTTAAATGGTTGGTCCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR GCA 72 bp | AAGAACAATGACCAGATGTTCCTCCGTACAAACATCTaGAGCCACCCGTCACTACCGCCATTTTGTGTCACC | + |
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Preference number: 3 (lower is better) Translates to: KNNDQMFLRTNI*SHPSLPPFCVT Trigger: GGTGACACAAAATGGCGGTAGTGACGGGTGGCTGCAGATGTTTGTACGGAGGAACATCTGGTCATTGTTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CCA 72 bp | CTGAAATCAGCTCCGAGTCACCCAACTGACTGTGACTaGGAACAGAGGACAAGGGGCACCAGAATATTTGAT | + |
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Preference number: 3 (lower is better) Translates to: LKSAPSHPTDCD*EQRTRGTRIFD Trigger: ATCAAATATTCTGGTGCCCCTTGTCCTCTGTTCCCAGTCACAGTCAGTTGGGTGACTCGGAGCTGATTTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR CAA 90 bp | CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCAGGTGCTTCATTTCCTCTAAAATaGGCAAGGGTTGCAAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: PCGCWDLNSGPSEEQSGASFPLK*ARVASC Trigger: ACAGCTTGCAACCCTTGCCAATTTTAGAGGAAATGA...AGCACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 72 bp | AACATACATACAGAACCCAGCCAAATGGATGCTGACTaGAATCAGCTCCGAGTCACCCAACTGACTGTGACT | + |
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Preference number: 3 (lower is better) Translates to: NIHTEPSQMDAD*NQLRVTQLTVT Trigger: AGTCACAGTCAGTTGGGTGACTCGGAGCTGATTTCAGTCAGCATCCATTTGGCTGGGTTCTGTATGTATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CCA 72 bp | ACAATTACAGGAACATACATACAGAACCCAGCCAAATaGATGCTGACTGAAATCAGCTCCGAGTCACCCAAC | + |
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Preference number: 3 (lower is better) Translates to: TITGTYIQNPAK*MLTEISSESPN Trigger: GTTGGGTGACTCGGAGCTGATTTCAGTCAGCATCCATTTGGCTGGGTTCTGTATGTATGTTCCTGTAATTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CCA 72 bp | GGTGGCGCTGTTTCACAGCAAAACTATCATCCTTGTTaGGAGAACATCAAAGAGGTGTACACTGTCAACCAA | + |
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Preference number: 3 (lower is better) Translates to: GGAVSQQNYHPC*ENIKEVYTVNQ Trigger: TTGGTTGACAGTGTACACCTCTTTGATGTTCTCCCAACAAGGATGATAGTTTTGCTGTGAAACAGCGCCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR-3UTR CAA 90 bp | TTACACACCACTCTGCTAAGACCTTCATATGTAAACGTGCTATTTCCTTTGTGCGTCTCAGTGACAAACTaGATTGAGAGGATGCAAAAT | + |
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Preference number: 3 (lower is better) Translates to: LHTTLLRPSYVNVLFPLCVSVTN*IERMQN Trigger: ATTTTGCATCCTCTCAATCAAGTTTGTCACTGAGAC...GCACAAAGGAAATAGCACGTTTACATATGAAGGTCTTAGCAGAGTGGTGTGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR TCA 72 bp | AAAACCAAAGAAAGAAACGCTTCCTCGTGGCAAAGATaGTTTATTGTACGTTATGGGAGAAGTGTTAAAGGT | + |
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Preference number: 3 (lower is better) Translates to: KTKERNASSWQR*FIVRYGRSVKG Trigger: ACCTTTAACACTTCTCCCATAACGTACAATAAATCATCTTTGCCACGAGGAAGCGTTTCTTTCTTTGGTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR GCA 90 bp | GTCCTGGTGACAGAAGCCTTTAACTCCCAGCAGCTGGAGGAAGAGGCAGGTCGGCGATCGTGGCCTCGGTaGGGTCGGGGAAGCGGCCGG | + |
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Preference number: 4 (lower is better) Translates to: VLVTEAFNSQQLEEEAGRRSWPR*GRGSGR Trigger: CCGGCCGCTTCCCCGACCGCACCGAGGCCACGATCG...CCGACCTGCCTCTTCCTCCAGCTGCTGGGAGTTAAAGGCTTCTGTCACCAGGAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CAA 72 bp | ACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTCGGAAGAGCAGTCAGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWD*NSGPSEEQSGA Trigger: AGCACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR GCA 90 bp | AGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATCCAGCAAGTGCTGTTTaGATTCCTCTATCCAAGCCG | + |
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Preference number: 4 (lower is better) Translates to: RESDLVTDGCEPPCGCWDPASAV*IPLSKP Trigger: CGGCTTGGATAGAGGAATGCAAACAGCACTTGCTGG...ATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR TCA 90 bp | ATGGGAGAAGTGTTAAAGGTGGCGCTGTTTCACAGCAAAACTATCATCCTTGTTAGCTGGACGAGAAGCTaGCCTCCAGCGACGACTCCA | + |
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Preference number: 4 (lower is better) Translates to: MGEVLKVALFHSKTIILVSWTRS*PPATTP Trigger: TGGAGTCGTCGCTGGAGGTCAGCTTCTCGTCCAGCT...AACAAGGATGATAGTTTTGCTGTGAAACAGCGCCACCTTTAACACTTCTCCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR TCA 90 bp | ATGAACTGTCCAGTTGGGACCATCAGAATAATGAAACAAGAATCTGAAACTAGGGGACCATGCTCTTCCTaGACCGCTCCTGCCCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: MNCPVGTIRIMKQESETRGPCSS*TAPALP Trigger: CGGCAGGGCAGGAGCGGTTCAGGAAGAGCATGGTCC...CCTAGTTTCAGATTCTTGTTTCATTATTCTGATGGTCCCAACTGGACAGTTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CCA 90 bp | AGGAACCAAAGAAAGATCTTTCTAACTACAAAGAAAGCCAATCTGGGTCCTAATAGTCCACCCCGATCGTaGCCTCGGTGCGGTCGGGGA | + |
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Preference number: 4 (lower is better) Translates to: RNQRKIFLTTKKANLGPNSPPRS*PRCGRG Trigger: TCCCCGACCGCACCGAGGCCACGATCGGGGTGGACT...ATTAGGACCCAGATTGGCTTTCTTTGTAGTTAGAAAGATCTTTCTTTGGTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CCA 90 bp | GAGGACCAACCATTTAAGGTCCATCATGCTCACTTGAAGCTGCTGCTTCTGGCTCTGTGGGCACCTGAATaGCGCTTCTCAAGTCACATT | + |
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Preference number: 4 (lower is better) Translates to: EDQPFKVHHAHLKLLLLALWAPE*RFSSHI Trigger: AATGTGACTTGAGAAGCGCCATTCAGGTGCCCACAG...AGCCAGAAGCAGCAGCTTCAAGTGAGCATGATGGACCTTAAATGGTTGGTCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CAA 72 bp | GAAGAGGACCAACCATTTAAGGTCCATCATGCTCACTaGAAGCTGCTGCTTCTGGCTGGAGCTGGAAAGATG | + |
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Preference number: 4 (lower is better) Translates to: EEDQPFKVHHAH*KLLLLAGAGKM Trigger: CATCTTTCCAGCTCCAGCCAGAAGCAGCAGCTTCAAGTGAGCATGATGGACCTTAAATGGTTGGTCCTCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR TCA 90 bp | GAGGACCAACCATTTAAGGTCCATCATGCTCACTTGAAGCTGCTGCTTCTGGCTCCCACAACTGGATCTTaGTGCGCTCTCCATCAATAT | + |
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Preference number: 4 (lower is better) Translates to: EDQPFKVHHAHLKLLLLAPTTGS*CALHQY Trigger: ATATTGATGGAGAGCGCATCAAGATCCAGTTGTGGG...AGCCAGAAGCAGCAGCTTCAAGTGAGCATGATGGACCTTAAATGGTTGGTCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CCA 90 bp | ATGGGAGAAGTGTTAAAGGTGGCGCTGTTTCACAGCAAAACTATCATCCTTGTTTCTGTGCCAAGTCTGTaGGCACCTGAATGGCGCTTC | + |
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Preference number: 4 (lower is better) Translates to: MGEVLKVALFHSKTIILVSVPSL*APEWRF Trigger: GAAGCGCCATTCAGGTGCCCACAGACTTGGCACAGA...AACAAGGATGATAGTTTTGCTGTGAAACAGCGCCACCTTTAACACTTCTCCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CCA 90 bp | ATGGGAGAAGTGTTAAAGGTGGCGCTGTTTCACAGCAAAACTATCATCCTTGTTGCAGGCTGTGGAAGCTaGCCATGTTGGTCATGTCAT | + |
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Preference number: 4 (lower is better) Translates to: MGEVLKVALFHSKTIILVAGCGS*PCWSCH Trigger: ATGACATGACCAACATGGCCAGCTTCCACAGCCTGC...AACAAGGATGATAGTTTTGCTGTGAAACAGCGCCACCTTTAACACTTCTCCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| 3UTR CAA 72 bp | TACAAACATCTGCAGCCACCCGTCACTACCGCCATTTaGTGTCACCAGGAAAACAGTTCACAAGTCAGCATT | + |
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Preference number: 4 (lower is better) Translates to: YKHLQPPVTTAI*CHQENSSQVSI Trigger: AATGCTGACTTGTGAACTGTTTTCCTGGTGACACAAAATGGCGGTAGTGACGGGTGGCTGCAGATGTTTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR TCA 90 bp | TTACACACCACTCTGCTAAGACCTTCATATGTAAACGTGCTATTTCCTTTGTGCAAGTCTGTGGGCACCTaGATGGCGCTTCTCAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: LHTTLLRPSYVNVLFPLCKSVGT*MALLKS Trigger: TGACTTGAGAAGCGCCATTCAGGTGCCCACAGACTT...GCACAAAGGAAATAGCACGTTTACATATGAAGGTCTTAGCAGAGTGGTGTGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR GCA 90 bp | AAGAAACGCTTCCTCGTGGCAAAGATGATTTATTGTACGTTATGGGAGAAGTGTGTCAGCAAACTTCTGTaGCAAGTCTGTGGGCACCTG | + |
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Preference number: 4 (lower is better) Translates to: KKRFLVAKMIYCTLWEKCVSKLL*QVCGHL Trigger: CAGGTGCCCACAGACTTGGCACAGAAGTTTGCTGAC...ACACTTCTCCCATAACGTACAATAAATCATCTTTGCCACGAGGAAGCGTTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CCA 90 bp | GCCACCCGTCACTACCGCCATTTTGTGTCACCAGGAAAACAGTTCACAAGTCAGAATATAGCTTCTACGTaGTCATTATCATTGGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: ATRHYRHFVSPGKQFTSQNIAST*SLSLGF Trigger: AAACCCCAATGATAATGACCACGTAGAAGCTATATT...CTGACTTGTGAACTGTTTTCCTGGTGACACAAAATGGCGGTAGTGACGGGTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CCA 90 bp | AAGAAACGCTTCCTCGTGGCAAAGATGATTTATTGTACGTTATGGGAGAAGTGTGGAAGCTGGCCATGTTaGTCATGTCATACACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: KKRFLVAKMIYCTLWEKCGSWPC*SCHTQR Trigger: TCTTTGTGTATGACATGACCAACATGGCCAGCTTCC...ACACTTCTCCCATAACGTACAATAAATCATCTTTGCCACGAGGAAGCGTTTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS TCA 90 bp | CTTGAAGATGCGGGAGCGGGCGGGAGGCAAACACCCAGACGCCCCTaGCACCGCACAGCTGGACGAGAAGCTGACCTCCAGCGACGACTC | + |
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Preference number: 5 (lower is better) Translates to: LEDAGAGGRQTPRRP*HRTAGREADLQRRL Trigger: GAGTCGTCGCTGGAGGTCAGCTTCTCGTCCAGCTGTGCGGTGTCAGGGGCGTCTGGGTGTTTGCCTCCCGCCCGCTCCCGCATCTTCAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054387.8 ENSMUST00000192172.2 |
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| CDS GCA 90 bp | TTCCCACCAGAATTCGAGGTATGTCGTTCGCCAGCAAGTGCTGTTTaGATTCCTCTATCCAAGCCGGCAGGCTGTGGAAGCTGGCCATGT | + |
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Preference number: 5 (lower is better) Translates to: FPPEFEVCRSPASAV*IPLSKPAGCGSWPC Trigger: ACATGGCCAGCTTCCACAGCCTGCCGGCTTGGATAGAGGAATGCAAACAGCACTTGCTGGCGAACGACATACCTCGAATTCTGGTGGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CAA 90 bp | GCTGCTTCTGGCTGGAGCTGGAAAGATGGCCCCGGTAGTCTTCATTTTCAATCCGCCAGCAAGTGCTGTTaGCATTCCTCTATCCAAGCC | + |
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Preference number: 5 (lower is better) Translates to: AASGWSWKDGPGSLHFQSASKCC*HSSIQA Trigger: GGCTTGGATAGAGGAATGCAAACAGCACTTGCTGGC...GGATTGAAAATGAAGACTACCGGGGCCATCTTTCCAGCTCCAGCCAGAAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS GCA 90 bp | CATTTATTTCCCACCAGAATTCGAGGTATGTCGTTCGCCAGCAAGTaGTGTTTGCATTCCTCTATCCAAGCCGGCAGGCTGTGGAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: HLFPTRIRGMSFASK*CLHSSIQAGRLWKL Trigger: CAGCTTCCACAGCCTGCCGGCTTGGATAGAGGAATGCAAACAGCACTTGCTGGCGAACGACATACCTCGAATTCTGGTGGGAAATAAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CCA 90 bp | TGCATTCCTCTATCCAAGCCGGCAGGCTGTGGAAGCTGGCCATGTTaGTCATGTCATACACAAAGACGACAGCATGCACATTCCTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: CIPLSKPAGCGSWPC*SCHTQRRQHAHSCS Trigger: ACTACAGGAATGTGCATGCTGTCGTCTTTGTGTATGACATGACCAACATGGCCAGCTTCCACAGCCTGCCGGCTTGGATAGAGGAATGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CCA 90 bp | AGTGCTGTTTGCATTCCTCTATCCAAGCCGGCAGGCTGTGGAAGCTaGCCATGTTGGTCATGTCATACACAAAGACGACAGCATGCACAT | + |
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Preference number: 5 (lower is better) Translates to: SAVCIPLSKPAGCGS*PCWSCHTQRRQHAH Trigger: ATGTGCATGCTGTCGTCTTTGTGTATGACATGACCAACATGGCCAGCTTCCACAGCCTGCCGGCTTGGATAGAGGAATGCAAACAGCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CAA 90 bp | TCTGTACTGAAACAGTCCAGAAGAAAACCACAGAGGTACTTAGAGAACAGATCACCGATCACTATGATCTaGAAGATGCGGGAGCGGGCG | + |
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Preference number: 5 (lower is better) Translates to: SVLKQSRRKPQRYLENRSPITMI*KMRERA Trigger: CGCCCGCTCCCGCATCTTCAAGATCATAGTGATCGG...TGATCTGTTCTCTAAGTACCTCTGTGGTTTTCTTCTGGACTGTTTCAGTACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CAA 90 bp | TTTCCTCTAAAATTGGCAAGGGTTGCAAGCTGTCACAAAGAGGATGTGCGGACTTCCCACAACTGGATCTaGATGCGCTCTCCATCAATA | + |
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Preference number: 5 (lower is better) Translates to: FPLKLARVASCHKEDVRTSHNWI*MRSPSI Trigger: TATTGATGGAGAGCGCATCAAGATCCAGTTGTGGGA...AGTCCGCACATCCTCTTTGTGACAGCTTGCAACCCTTGCCAATTTTAGAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS TCA 90 bp | TCAGGCAGCTGGCTAAGCATCAATGGCTTGTGGCTCTTTAGCTTATaGGCTAAGGTCATGAATATAGCTTCTACGTGGTCATTATCATTG | + |
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Preference number: 5 (lower is better) Translates to: SGSWLSINGLWLFSL*AKVMNIASTWSLSL Trigger: CAATGATAATGACCACGTAGAAGCTATATTCATGACCTTAGCTCATAAGCTAAAGAGCCACAAGCCATTGATGCTTAGCCAGCTGCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS-3UTR CAA 90 bp | TCTGTACTGAAACAGTCCAGAAGAAAACCACAGAGGTACTTAGAGAACAGATCAACGTGGTCATTATCATaGGGGTTTTTAGCAGAGGTC | + |
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Preference number: 5 (lower is better) Translates to: SVLKQSRRKPQRYLENRSTWSLS*GFLAEV Trigger: GACCTCTGCTAAAAACCCCAATGATAATGACCACGT...TGATCTGTTCTCTAAGTACCTCTGTGGTTTTCTTCTGGACTGTTTCAGTACAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CCA 72 bp | TATCCACGGCTCGCTCTCGGAAGTCCACCCCGATCGTaGCCTCGGTGCGGTCGGGGAAGCGGCCGGCGCAGA | + |
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Preference number: 6 (lower is better) Translates to: YPRLALGSPPRS*PRCGRGSGRRR Trigger: TCTGCGCCGGCCGCTTCCCCGACCGCACCGAGGCCACGATCGGGGTGGACTTCCGAGAGCGAGCCGTGGATA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS TCA 72 bp | GCGGGAGCGGGCGGGAGGCAAACACCCAGACGCCCCTaGCACCGCACAGCTGGACGAGAAGCTGACCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: AGAGGRQTPRRP*HRTAGREADLQ Trigger: CTGGAGGTCAGCTTCTCGTCCAGCTGTGCGGTGTCAGGGGCGTCTGGGTGTTTGCCTCCCGCCCGCTCCCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054387.8 ENSMUST00000192172.2 |
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| CDS GCA 72 bp | CCCACCAGAATTCGAGGTATGTCGTTCGCCAGCAAGTaGTGTTTGCATTCCTCTATCCAAGCCGGCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PTRIRGMSFASK*CLHSSIQAGRL Trigger: CAGCCTGCCGGCTTGGATAGAGGAATGCAAACAGCACTTGCTGGCGAACGACATACCTCGAATTCTGGTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CAA 90 bp | TTTCCCACCAGAATTCGAGGTATGTCGTTCGCCAGCAAGTGCTGTTaGCATTCCTCTATCCAAGCCGGCAGGCTGTGGAAGCTGGCCATG | + |
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Preference number: 6 (lower is better) Translates to: FPTRIRGMSFASKCC*HSSIQAGRLWKLAM Trigger: CATGGCCAGCTTCCACAGCCTGCCGGCTTGGATAGAGGAATGCAAACAGCACTTGCTGGCGAACGACATACCTCGAATTCTGGTGGGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CCA 72 bp | CTATCCAAGCCGGCAGGCTGTGGAAGCTGGCCATGTTaGTCATGTCATACACAAAGACGACAGCATGCACAT | + |
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Preference number: 6 (lower is better) Translates to: LSKPAGCGSWPC*SCHTQRRQHAH Trigger: ATGTGCATGCTGTCGTCTTTGTGTATGACATGACCAACATGGCCAGCTTCCACAGCCTGCCGGCTTGGATAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CCA 72 bp | TGCATTCCTCTATCCAAGCCGGCAGGCTGTGGAAGCTaGCCATGTTGGTCATGTCATACACAAAGACGACAG | + |
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Preference number: 6 (lower is better) Translates to: CIPLSKPAGCGS*PCWSCHTQRRQ Trigger: CTGTCGTCTTTGTGTATGACATGACCAACATGGCCAGCTTCCACAGCCTGCCGGCTTGGATAGAGGAATGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CAA 72 bp | TCTATCCAAGCCGGCAGGCTGTGGAAGCTGGCCATGTaGGTCATGTCATACACAAAGACGACAGCATGCACA | + |
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Preference number: 6 (lower is better) Translates to: SIQAGRLWKLAM*VMSYTKTTACT Trigger: TGTGCATGCTGTCGTCTTTGTGTATGACATGACCAACATGGCCAGCTTCCACAGCCTGCCGGCTTGGATAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CAA 72 bp | AGAATTCGAGGTATGTCGTTCGCCAGCAAGTGCTGTTaGCATTCCTCTATCCAAGCCGGCAGGCTGTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RIRGMSFASKCC*HSSIQAGRLWK Trigger: CTTCCACAGCCTGCCGGCTTGGATAGAGGAATGCAAACAGCACTTGCTGGCGAACGACATACCTCGAATTCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS GCA 72 bp | AAACAAAGGCATACTGTGTGTGTCAGCAAACTTCTGTaGCAAGTCTGTGGGCACCTGAATGGCGCTTCTCAA | + |
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Preference number: 6 (lower is better) Translates to: KQRHTVCVSKLL*QVCGHLNGASQ Trigger: TTGAGAAGCGCCATTCAGGTGCCCACAGACTTGGCACAGAAGTTTGCTGACACACACAGTATGCCTTTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CCA 72 bp | TACTGTGTGTGTCAGCAAACTTCTGTGCCAAGTCTGTaGGCACCTGAATGGCGCTTCTCAAGTCACATTTAT | + |
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Preference number: 6 (lower is better) Translates to: YCVCQQTSVPSL*APEWRFSSHIY Trigger: ATAAATGTGACTTGAGAAGCGCCATTCAGGTGCCCACAGACTTGGCACAGAAGTTTGCTGACACACACAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CCA 72 bp | GTCTCAGGTTTCAGGCTAATTCTGTTATCAGGCAGCTaGCTAAGCATCAATGGCTTGTGGCTCTTTAGCTTA | + |
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Preference number: 6 (lower is better) Translates to: VSGFRLILLSGS*LSINGLWLFSL Trigger: TAAGCTAAAGAGCCACAAGCCATTGATGCTTAGCCAGCTGCCTGATAACAGAATTAGCCTGAAACCTGAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS TCA 72 bp | TGGCTAAGCATCAATGGCTTGTGGCTCTTTAGCTTATaGGCTAAGGTCATGAATATAGCTTCTACGTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: WLSINGLWLFSL*AKVMNIASTWS Trigger: TGACCACGTAGAAGCTATATTCATGACCTTAGCTCATAAGCTAAAGAGCCACAAGCCATTGATGCTTAGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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| CDS CAA 72 bp | AAGGTCATGAATATAGCTTCTACGTGGTCATTATCATaGGGGTTTTTAGCAGAGGTCTCAAACAAAGGCATA | + |
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Preference number: 6 (lower is better) Translates to: KVMNIASTWSLS*GFLAEVSNKGI Trigger: TATGCCTTTGTTTGAGACCTCTGCTAAAAACCCCAATGATAATGACCACGTAGAAGCTATATTCATGACCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054387.8 |
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