Pregenerated sensors for RAB33A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031104Ensembl transcript IDs: ENSMUST00000033430.3
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCGCAGCTGAGGCGGGCTaGAGGCTCCCATGGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: KRERKNSSGNSRILTPFGAAEAG*RLPWPR Trigger: CCTGGGCCATGGGAGCCTGCAGCCCGCCTCAGCTGC...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CCA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCCACCTTGGGGACGAGTaGGGGCACAGCATGCCCGTT | + |
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Preference number: 4 (lower is better) Translates to: KRERKNSSGNSRILTPFGHLGDE*GHSMPV Trigger: AACGGGCATGCTGTGCCCCCACTCGTCCCCAAGGTG...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR GCA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCAGTGGGGGCACAGCATaGCCGTTGCATTCCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: KRERKNSSGNSRILTPFGSGGTA*PLHSWI Trigger: GATCCAGGAATGCAACGGGCATGCTGTGCCCCCACT...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR TCA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCGTACTGGTCCATCGATaGGTCGAGCTCCAAGGATGC | + |
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Preference number: 4 (lower is better) Translates to: KRERKNSSGNSRILTPFGVLVHR*VELQGC Trigger: GCATCCTTGGAGCTCGACTCATCGATGGACCAGTAC...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR GCA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCAGGTCAGGCAGGTCTTaGCCACGTTGGAATCCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: KRERKNSSGNSRILTPFGRSGRS*PRWNPQ Trigger: TTGGGGATTCCAACGTGGGCAAGACCTGCCTGACCT...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CCA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACATACCCACAAGCACCTTaGGGACGAGTGGGGGCACAG | + |
|
Preference number: 4 (lower is better) Translates to: ILILVCMETSRCRYYAGTYPQAP*GRVGAQ Trigger: CTGTGCCCCCACTCGTCCCCAAGGTGCTTGTGGGTA...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR TCA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCGGCAAGCCAGGCACATaGAGATCGACTCCACATTCT | + |
|
Preference number: 4 (lower is better) Translates to: KRERKNSSGNSRILTPFGGKPGT*RSTPHS Trigger: AGAATGTGGAGTCGATCTTCATGTGCCTGGCTTGCC...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR GCA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACATTCTGCACCTTGCCTTaGTGCCTCTCGGCATCACGG | + |
|
Preference number: 4 (lower is better) Translates to: ILILVCMETSRCRYYAGTFCTLP*CLSASR Trigger: CCGTGATGCCGAGAGGCAGCAAGGCAAGGTGCAGAA...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CCA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCCGAATCTGCACGTACTaGTCCATCGATGAGTCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: KRERKNSSGNSRILTPFGRICTY*SIDESS Trigger: GCTCGACTCATCGATGGACCAGTACGTGCAGATTCG...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CCA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAAGGCCTCAGTCTTGTCTaGGAAAGTACCCCCGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: ILVCMETSRCRYYAGTEKGLSLV*ESTPAE Trigger: TTCTGCGGGGGTACTTTCCCAGACAAGACTGAGGCC...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR TCA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAACCCACACCTGAACCTTaGTCTTCTCGCCCTCGATTT | + |
|
Preference number: 4 (lower is better) Translates to: ILVCMETSRCRYYAGTEKPTPEP*SSRPRF Trigger: AAATCGAGGGCGAGAAGATCAAGGTTCAGGTGTGGG...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR GCA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAACCACGGCATGCACGTTaGGGTAGTAATGCTCAACCA | + |
|
Preference number: 4 (lower is better) Translates to: ILVCMETSRCRYYAGTEKPRHAR*GSNAQP Trigger: TGGTTGAGCATTACTACCGCAACGTGCATGCCGTGG...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CCA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCATCGACTCCACATTCTaGCTTTCTTTGGGGTCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: KRERKNSSGNSRILTPFGIDSTF*LSLGSL Trigger: CAAGGACCCCAAAGAAAGCCAGAATGTGGAGTCGAT...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR TCA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAACCGTTAGCCTCTTGTaGGAACTCCAGTTTCTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: ILILVCMETSRCRYYAGTTVSLL*ELQFLH Trigger: GTGCAGAAACTGGAGTTCTCACAAGAGGCTAACGGT...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR GCA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGCACAGCATGCCCGTTaGATTCCTGGATCCACATTT | + |
|
Preference number: 4 (lower is better) Translates to: ILILVCMETSRCRYYAGTAQHAR*IPGSTF Trigger: AAATGTGGATCCAGGAATGCAACGGGCATGCTGTGC...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR TCA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAAAGGAGGTCATCTTGGTaGCGTCATAGACAAAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: ILVCMETSRCRYYAGTEKRRSSW*RHRQRP Trigger: TGGTCTTTGTCTATGACGTCACCAAGATGACCTCCT...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR TCA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCAACAAGAGCATGTTATaGGCGTCAGCAAATTTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: KRERKNSSGNSRILTPFGNKSML*ASANFR Trigger: CCTGAAATTTGCTGACGCTCATAACATGCTCTTGTT...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CCA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAAAAGTTGGAGGGTACCTaGATCTGTTCCCTCAAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: ILVCMETSRCRYYAGTEKKLEGT*ICSLKS Trigger: TGACTTGAGGGAACAGATCCAGGTACCCTCCAACTT...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 40% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CCA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAAATTTCAGGGCTAAGTTaGAGGGTACCTGGATCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: ILVCMETSRCRYYAGTEKISGLS*RVPGSV Trigger: AACAGATCCAGGTACCCTCCAACTTAGCCCTGAAAT...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR GCA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACATTGAAAATGCGAATCTaGACGTACTGGTCCATCGAT | + |
|
Preference number: 4 (lower is better) Translates to: ILILVCMETSRCRYYAGTLKMRI*TYWSID Trigger: ATCGATGGACCAGTACGTGCAGATTCGCATTTTCAA...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CCA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAATGCCCGTTGCATTCCTaGATCCACATTTTTAAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: ILVCMETSRCRYYAGTEKCPLHS*IHIFKL Trigger: CAACTTAAAAATGTGGATCCAGGAATGCAACGGGCA...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS CCA 90 bp | ACCTTGCCTTGCTGCCTCTCGGCATCACGGTACAAGAGGGATTTCTaGGCCTTAAGTCGGCAAGCCAGGCACATGAAGATCGACTCCACA | + |
|
Preference number: 5 (lower is better) Translates to: TLPCCLSASRYKRDF*ALSRQARHMKIDST Trigger: TGTGGAGTCGATCTTCATGTGCCTGGCTTGCCGACTTAAGGCCCAGAAATCCCTCTTGTACCGTGATGCCGAGAGGCAGCAAGGCAAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS GCA 90 bp | GGACAGGAGGCTTTACCGTTAGCCTCTTGTGAGAACTCCAGTTTCTaGACCTTGCCTTGCTGCCTCTCGGCATCACGGTACAAGAGGGAT | + |
|
Preference number: 5 (lower is better) Translates to: GQEALPLASCENSSF*TLPCCLSASRYKRD Trigger: ATCCCTCTTGTACCGTGATGCCGAGAGGCAGCAAGGCAAGGTGCAGAAACTGGAGTTCTCACAAGAGGCTAACGGTAAAGCCTCCTGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS GCA 90 bp | CCGTTAGCCTCTTGTGAGAACTCCAGTTTCTGCACCTTGCCTTGCTaGCTCTCGGCATCACGGTACAAGAGGGATTTCTGGGCCTTAAGT | + |
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Preference number: 5 (lower is better) Translates to: PLASCENSSFCTLPC*LSASRYKRDFWALS Trigger: ACTTAAGGCCCAGAAATCCCTCTTGTACCGTGATGCCGAGAGGCAGCAAGGCAAGGTGCAGAAACTGGAGTTCTCACAAGAGGCTAACGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS GCA 90 bp | TTACCGTTAGCCTCTTGTGAGAACTCCAGTTTCTGCACCTTGCCTTaGTGCCTCTCGGCATCACGGTACAAGAGGGATTTCTGGGCCTTA | + |
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Preference number: 5 (lower is better) Translates to: LPLASCENSSFCTLP*CLSASRYKRDFWAL Trigger: TAAGGCCCAGAAATCCCTCTTGTACCGTGATGCCGAGAGGCAGCAAGGCAAGGTGCAGAAACTGGAGTTCTCACAAGAGGCTAACGGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS CCA 90 bp | GCCTTAAGTCGGCAAGCCAGGCACATGAAGATCGACTCCACATTCTaGCTTTCTTTGGGGTCCTTGGCTGATGTCTCAAACAAGAGCATG | + |
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Preference number: 5 (lower is better) Translates to: ALSRQARHMKIDSTF*LSLGSLADVSNKSM Trigger: CATGCTCTTGTTTGAGACATCAGCCAAGGACCCCAAAGAAAGCCAGAATGTGGAGTCGATCTTCATGTGCCTGGCTTGCCGACTTAAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS TCA 90 bp | CATGAAGATCGACTCCACATTCTGGCTTTCTTTGGGGTCCTTGGCTaGTGTCTCAAACAAGAGCATGTTATGAGCGTCAGCAAATTTCAG | + |
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Preference number: 5 (lower is better) Translates to: HEDRLHILAFFGVLG*CLKQEHVMSVSKFQ Trigger: CTGAAATTTGCTGACGCTCATAACATGCTCTTGTTTGAGACATCAGCCAAGGACCCCAAAGAAAGCCAGAATGTGGAGTCGATCTTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAATTACCCACAAGCACCTaGGGGACGAGTGGGGGCACA | + |
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Preference number: 5 (lower is better) Translates to: ILVCMETSRCRYYAGTEKLPTST*GTSGGT Trigger: TGTGCCCCCACTCGTCCCCAAGGTGCTTGTGGGTAA...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAAAAGGTCAGGCAGGTCTaGCCCACGTTGGAATCCCCA | + |
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Preference number: 5 (lower is better) Translates to: ILVCMETSRCRYYAGTEKKVRQV*PTLESP Trigger: TGGGGATTCCAACGTGGGCAAGACCTGCCTGACCTT...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACATTTCTGCACCTTGCCTaGCTGCCTCTCGGCATCACG | + |
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Preference number: 5 (lower is better) Translates to: ILILVCMETSRCRYYAGTFLHLA*LPLGIT Trigger: CGTGATGCCGAGAGGCAGCAAGGCAAGGTGCAGAAA...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAATCCAGTTTCTGCACCTaGCCTTGCTGCCTCTCGGCA | + |
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Preference number: 5 (lower is better) Translates to: ILVCMETSRCRYYAGTEKSSFCT*PCCLSA Trigger: TGCCGAGAGGCAGCAAGGCAAGGTGCAGAAACTGGA...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAAATAGTGGCCTCAGTCTaGTCTGGGAAAGTACCCCCG | + |
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Preference number: 5 (lower is better) Translates to: ILVCMETSRCRYYAGTEKIVASV*SGKVPP Trigger: CGGGGGTACTTTCCCAGACAAGACTGAGGCCACTAT...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 43% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGGCACAGCATGCCCGTaGCATTCCTGGATCCACATT | + |
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Preference number: 5 (lower is better) Translates to: ILILVCMETSRCRYYAGTGTACP*HSWIHI Trigger: AATGTGGATCCAGGAATGCAACGGGCATGCTGTGCC...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACATCCCTCAAGTCACACTaGTTACCCACAAGCACCTTG | + |
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Preference number: 5 (lower is better) Translates to: ILILVCMETSRCRYYAGTSLKSH*LPTSTL Trigger: CAAGGTGCTTGTGGGTAACAAGTGTGACTTGAGGGA...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAGAAAAAACATTCTGGCTTTCTTaGGGGTCCTTGGCTGATGTC | + |
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Preference number: 5 (lower is better) Translates to: ILVCMETSRCRYYAGTEKTFWLS*GSLADV Trigger: GACATCAGCCAAGGACCCCAAAGAAAGCCAGAATGT...TTTTTCTGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATAT 41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | AAAAGGGAAAGGAAAAACTCCAGTGGTAATTCTCGAATATTGACACCATTTGGCCCAATCACGATGATTTaGAAAATGCGAATCTGCACG | + |
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Preference number: 5 (lower is better) Translates to: KRERKNSSGNSRILTPFGPITMI*KMRICT Trigger: CGTGCAGATTCGCATTTTCAAAATCATCGTGATTGG...GCCAAATGGTGTCAATATTCGAGAATTACCACTGGAGTTTTTCCTTTCCCTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAAATTTCAGGGCTAAGTaGGAGGGTACCTGGATCTGT | + |
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Preference number: 5 (lower is better) Translates to: ILILVCMETSRCRYYAGTNFRAK*EGTWIC Trigger: ACAGATCCAGGTACCCTCCAACTTAGCCCTGAAATT...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACACTTTCTTTGGGGTCCTaGGCTGATGTCTCAAACAAG | + |
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Preference number: 5 (lower is better) Translates to: ILILVCMETSRCRYYAGTLSLGS*ADVSNK Trigger: CTTGTTTGAGACATCAGCCAAGGACCCCAAAGAAAG...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS-3UTR CAA 90 bp | ATTTTGATATTAGTTTGTATGGAAACAAGCAGGTGTAGGTATTATGCAGGCACAATCCACATTTTTAAGTaGGTGAAGGAGGTCATCTTG | + |
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Preference number: 5 (lower is better) Translates to: ILILVCMETSRCRYYAGTIHIFK*VKEVIL Trigger: CAAGATGACCTCCTTCACCAACTTAAAAATGTGGAT...TGTGCCTGCATAATACCTACACCTGCTTGTTTCCATACAAACTAATATCAAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS CAA 90 bp | AGGGCTAAGTTGGAGGGTACCTGGATCTGTTCCCTCAAGTCACACTaGTTACCCACAAGCACCTTGGGGACGAGTGGGGGCACAGCATGC | + |
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Preference number: 6 (lower is better) Translates to: RAKLEGTWICSLKSH*LPTSTLGTSGGTAC Trigger: GCATGCTGTGCCCCCACTCGTCCCCAAGGTGCTTGTGGGTAACAAGTGTGACTTGAGGGAACAGATCCAGGTACCCTCCAACTTAGCCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS GCA 72 bp | CCACGGCATGCACGTTGCGGTAGTAATGCTCAACCATaGTTTTACGGAAGCGTTCTTGGCCTGCCGTGTCCC | + |
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Preference number: 6 (lower is better) Translates to: PRHARCGSNAQP*FYGSVLGLPCP Trigger: GGGACACGGCAGGCCAAGAACGCTTCCGTAAAAGCATGGTTGAGCATTACTACCGCAACGTGCATGCCGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS CAA 72 bp | TTGGAGGGTACCTGGATCTGTTCCCTCAAGTCACACTaGTTACCCACAAGCACCTTGGGGACGAGTGGGGGC | + |
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Preference number: 6 (lower is better) Translates to: LEGTWICSLKSH*LPTSTLGTSGG Trigger: GCCCCCACTCGTCCCCAAGGTGCTTGTGGGTAACAAGTGTGACTTGAGGGAACAGATCCAGGTACCCTCCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS CCA 72 bp | TGCTGCCTCTCGGCATCACGGTACAAGAGGGATTTCTaGGCCTTAAGTCGGCAAGCCAGGCACATGAAGATC | + |
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Preference number: 6 (lower is better) Translates to: CCLSASRYKRDF*ALSRQARHMKI Trigger: GATCTTCATGTGCCTGGCTTGCCGACTTAAGGCCCAGAAATCCCTCTTGTACCGTGATGCCGAGAGGCAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS CAA 72 bp | CCGTTAGCCTCTTGTGAGAACTCCAGTTTCTGCACCTaGCCTTGCTGCCTCTCGGCATCACGGTACAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: PLASCENSSFCT*PCCLSASRYKR Trigger: CCTCTTGTACCGTGATGCCGAGAGGCAGCAAGGCAAGGTGCAGAAACTGGAGTTCTCACAAGAGGCTAACGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS CCA 72 bp | GGGACGAGTGGGGGCACAGCATGCCCGTTGCATTCCTaGATCCACATTTTTAAGTTGGTGAAGGAGGTCATC | + |
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Preference number: 6 (lower is better) Translates to: GTSGGTACPLHS*IHIFKLVKEVI Trigger: GATGACCTCCTTCACCAACTTAAAAATGTGGATCCAGGAATGCAACGGGCATGCTGTGCCCCCACTCGTCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS CAA 90 bp | GAGGCTTTACCGTTAGCCTCTTGTGAGAACTCCAGTTTCTGCACCTaGCCTTGCTGCCTCTCGGCATCACGGTACAAGAGGGATTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: EALPLASCENSSFCT*PCCLSASRYKRDFW Trigger: CCAGAAATCCCTCTTGTACCGTGATGCCGAGAGGCAGCAAGGCAAGGTGCAGAAACTGGAGTTCTCACAAGAGGCTAACGGTAAAGCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS CCA 72 bp | CGGCAAGCCAGGCACATGAAGATCGACTCCACATTCTaGCTTTCTTTGGGGTCCTTGGCTGATGTCTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: RQARHMKIDSTF*LSLGSLADVSN Trigger: GTTTGAGACATCAGCCAAGGACCCCAAAGAAAGCCAGAATGTGGAGTCGATCTTCATGTGCCTGGCTTGCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS TCA 72 bp | TCAACAAGGACAGGAGGCTTTACCGTTAGCCTCTTGTaGGAACTCCAGTTTCTGCACCTTGCCTTGCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: STRTGGFTVSLL*ELQFLHLALLP Trigger: AGGCAGCAAGGCAAGGTGCAGAAACTGGAGTTCTCACAAGAGGCTAACGGTAAAGCCTCCTGTCCTTGTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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| CDS TCA 72 bp | CGACTCCACATTCTGGCTTTCTTTGGGGTCCTTGGCTaGTGTCTCAAACAAGAGCATGTTATGAGCGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RLHILAFFGVLG*CLKQEHVMSVS Trigger: GCTGACGCTCATAACATGCTCTTGTTTGAGACATCAGCCAAGGACCCCAAAGAAAGCCAGAATGTGGAGTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033430.3 |
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