Pregenerated sensors for RAB32 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019832Ensembl transcript IDs: ENSMUST00000019974.5, ENSMUST00000220018.3
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GACAAGAGCCTGAGGGGTCCTCGGGTAAAGTCACAGGGCCTCTCATaGGAACAGTTCTCCATGGATCTTCAGATGGGCGGTGCCTGTACA | + |
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Preference number: 1 (lower is better) Translates to: DKSLRGPRVKSQGLS*EQFSMDLQMGGACT Trigger: TGTACAGGCACCGCCCATCTGAAGATCCATGGAGAACTGTTCCCATGAGAGGCCCTGTGACTTTACCCGAGGACCCCTCAGGCTCTTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR CCA 90 bp | CAAAACTGGTCCATCTGGGAAGGACTCTGGCTGTTGTCCTTCTTCTaGTCACATTTGTTAGCTAGGAGGACAGCAGGAATGGGGCTGCCG | + |
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Preference number: 1 (lower is better) Translates to: QNWSIWEGLWLLSFF*SHLLARRTAGMGLP Trigger: CGGCAGCCCCATTCCTGCTGTCCTCCTAGCTAACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGACCAGTTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR CCA 90 bp | GTGAAGCCATGGTCTTTACAAAACTGGTCCATCTGGGAAGGACTCTaGCTGTTGTCCTTCTTCTGGTCACATTTGTTAGCTAGGAGGACA | + |
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Preference number: 1 (lower is better) Translates to: VKPWSLQNWSIWEGL*LLSFFWSHLLARRT Trigger: TGTCCTCCTAGCTAACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGACCAGTTTTGTAAAGACCATGGCTTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR GCA 90 bp | ACCAGTTTAATTCTGTCCAGGTCGATTTCTTCACTAGGAAAACTTTaGTGGTTTGCAAGCATGTTTTCCACTAGGAAGCGGGTGGCCTCG | + |
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Preference number: 1 (lower is better) Translates to: TSLILSRSISSLGKL*WFASMFSTRKRVAS Trigger: CGAGGCCACCCGCTTCCTAGTGGAAAACATGCTTGCAAACCAGCAAAGTTTTCCTAGTGAAGAAATCGACCTGGACAGAATTAAACTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR TCA 90 bp | TTTTTAATTTTGGGAGAAAGCCTCTTGTGTAGCACCGGCTATTCTTaGACTTGCAATGTAGCCAAGATATGCACTCCCACCCTTTGTCTC | + |
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Preference number: 1 (lower is better) Translates to: FLILGESLLCSTGYS*TCNVAKICTPTLCL Trigger: GAGACAAAGGGTGGGAGTGCATATCTTGGCTACATTGCAAGTTCAAGAATAGCCGGTGCTACACAAGAGGCTTTCTCCCAAAATTAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR TCA 90 bp | TTCCTTATAGTATACTCGAGTCATGTTGCCAAACCGTTCCTGTCCTaGCTTCAGAATAAACTGGTGGAATTAAGGACTTTCACACAGACC | + |
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Preference number: 1 (lower is better) Translates to: FLIVYSSHVAKPFLS*LQNKLVELRTFTQT Trigger: GGTCTGTGTGAAAGTCCTTAATTCCACCAGTTTATTCTGAAGTCAGGACAGGAACGGTTTGGCAACATGACTCGAGTATACTATAAGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR GCA 90 bp | GACTGCATCAAATGTAGAACTTCTCGATATATCAAAGACTACAAATaGTCCAAGAGCTTCCTTATAGTATACTCGAGTCATGTTGCCAAA | + |
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Preference number: 1 (lower is better) Translates to: DCIKCRTSRYIKDYK*SKSFLIVYSSHVAK Trigger: TTTGGCAACATGACTCGAGTATACTATAAGGAAGCTCTTGGAGCATTTGTAGTCTTTGATATATCGAGAAGTTCTACATTTGATGCAGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR CCA 90 bp | AAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGAGGGAGGACAGCAGGAATaGGGCTGCCGTTGGGAAGAT | + |
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Preference number: 2 (lower is better) Translates to: KGQPPYRQDQGDSTWGTEGGQQE*GCRWED Trigger: ATCTTCCCAACGGCAGCCCCATTCCTGCTGTCCTCC...CTCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR CCA 90 bp | GGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGAGACATGGTCTTTACAAAACTaGTCCATCTGGGAAGGACTC | + |
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Preference number: 2 (lower is better) Translates to: GQPPYRQDQGDSTWGTETWSLQN*SIWEGL Trigger: GAGTCCTTCCCAGATGGACCAGTTTTGTAAAGACCA...TGTCTCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR CAA 90 bp | TCCATCTGGGAAGGACTCTGGCTGTTGTCCTTCTTCTGGTCACATTaGTTAGCTAGGAGGACAGCAGGAATGGGGCTGCCGTTGGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: SIWEGLWLLSFFWSH*LARRTAGMGLPLGR Trigger: TCTTCCCAACGGCAGCCCCATTCCTGCTGTCCTCCTAGCTAACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR TCA 90 bp | GAAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGCAGGAACAAAGTCACTaGAAAGTCACAATCACCATC | + |
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Preference number: 2 (lower is better) Translates to: ERGSLHTGRTKETAHGAQQEQSH*KVTITI Trigger: GATGGTGATTGTGACTTTTCAGTGACTTTGTTCCTG...CTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR-3UTR CCA 90 bp | GGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGAGACCTAGGAAAACTTTGCTaGTTTGCAAGCATGTTTTCC | + |
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Preference number: 2 (lower is better) Translates to: GAASIQAGPRRQHMGHRDLGKLC*FASMFS Trigger: GGAAAACATGCTTGCAAACCAGCAAAGTTTTCCTAG...GTCTCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR TCA 90 bp | TCCTTCTTCTGGTCACATTTGTTAGCTAGGAGGACAGCAGGAATGGGGCTGCCGAAACCGTTCCTGTCCTaGCTTCAGAATAAACTGGTG | + |
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Preference number: 2 (lower is better) Translates to: SFFWSHLLARRTAGMGLPKPFLS*LQNKLV Trigger: CACCAGTTTATTCTGAAGTCAGGACAGGAACGGTTT...CGGCAGCCCCATTCCTGCTGTCCTCCTAGCTAACAAATGTGACCAGAAGAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR CAA 90 bp | CCATGGTCTTTACAAAACTGGTCCATCTGGGAAGGACTCTGGCTGTaGTCCTTCTTCTGGTCACATTTGTTAGCTAGGAGGACAGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: PWSLQNWSIWEGLWL*SFFWSHLLARRTAG Trigger: TCCTGCTGTCCTCCTAGCTAACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGACCAGTTTTGTAAAGACCATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR TCA 90 bp | ACTGGTCCATCTGGGAAGGACTCTGGCTGTTGTCCTTCTTCTGGTCACATTTGTCTGCCGTTGGGAAGATaGACTTTACTATCCAGATCG | + |
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Preference number: 2 (lower is better) Translates to: TGPSGKDSGCCPSSGHICLPLGR*TLLSRS Trigger: CGATCTGGATAGTAAAGTTCATCTTCCCAACGGCAG...ACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGACCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR CCA 90 bp | GGCTCCTCTACCAGTTTAATTCTGTCCAGGTCGATTTCTTCACTAGGAAAACTTAGTGGCACCGAGGGTTaGAAAGGGGCAGCCTCCATA | + |
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Preference number: 2 (lower is better) Translates to: GSSTSLILSRSISSLGKLSGTEG*KGAASI Trigger: TATGGAGGCTGCCCCTTTCCAACCCTCGGTGCCACT...AAGTTTTCCTAGTGAAGAAATCGACCTGGACAGAATTAAACTGGTAGAGGAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR GCA 90 bp | TCGATGTTTATATTATCCTTGGCAGAGGTTTCAAACCATCCAGTGAAGCCATGGCAGCAGGAATGGGGCTaGCGTTGGGAAGATGAACTT | + |
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Preference number: 2 (lower is better) Translates to: SMFILSLAEVSNHPVKPWQQEWG*RWEDEL Trigger: AAGTTCATCTTCCCAACGGCAGCCCCATTCCTGCTG...CCATGGCTTCACTGGATGGTTTGAAACCTCTGCCAAGGATAATATAAACATCGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR GCA 90 bp | TTCTGGTCACATTTGTTAGCTAGGAGGACAGCAGGAATGGGGCTGCCGTTGGGAATCAAAGACTACAAATaGTCCAAGAGCTTCCTTATA | + |
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Preference number: 2 (lower is better) Translates to: FWSHLLARRTAGMGLPLGIKDYK*SKSFLI Trigger: TATAAGGAAGCTCTTGGAGCATTTGTAGTCTTTGAT...TCCCAACGGCAGCCCCATTCCTGCTGTCCTCCTAGCTAACAAATGTGACCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR CCA 90 bp | AAGCGGGTGGCCTCGTCGATGTTTATATTATCCTTGGCAGAGGTTTCAAACCATGAATGGGGCTGCCGTTaGGAAGATGAACTTTACTAT | + |
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Preference number: 2 (lower is better) Translates to: KRVASSMFILSLAEVSNHEWGCR*EDELYY Trigger: ATAGTAAAGTTCATCTTCCCAACGGCAGCCCCATTC...ATGGTTTGAAACCTCTGCCAAGGATAATATAAACATCGACGAGGCCACCCGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR CCA 90 bp | GGTTTGCAAGCATGTTTTCCACTAGGAAGCGGGTGGCCTCGTCGATGTTTATATCTGTTGTCCTTCTTCTaGTCACATTTGTTAGCTAGG | + |
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Preference number: 2 (lower is better) Translates to: GLQACFPLGSGWPRRCLYLLSFF*SHLLAR Trigger: CCTAGCTAACAAATGTGACCAGAAGAAGGACAACAG...ATATAAACATCGACGAGGCCACCCGCTTCCTAGTGGAAAACATGCTTGCAAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR CCA 90 bp | GGCTCCTCTACCAGTTTAATTCTGTCCAGGTCGATTTCTTCACTAGGAAAACTTATCTGGGAAGGACTCTaGCTGTTGTCCTTCTTCTGG | + |
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Preference number: 2 (lower is better) Translates to: GSSTSLILSRSISSLGKLIWEGL*LLSFFW Trigger: CCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGAT...AAGTTTTCCTAGTGAAGAAATCGACCTGGACAGAATTAAACTGGTAGAGGAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR TCA 90 bp | ACACATTTTCTAAACCAGAACAGTTCCTTCCTAGAACTAACCACATTCATTCAATTGCATTTGGCAGTATaGCAAGAGCCTGAGGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: THFLNQNSSFLELTTFIQLHLAV*QEPEGS Trigger: GGACCCCTCAGGCTCTTGTCATACTGCCAAATGCAA...TTGAATGAATGTGGTTAGTTCTAGGAAGGAACTGTTCTGGTTTAGAAAATGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR CAA 90 bp | TATAAGTACAGAATAGAGGGCAGAGAAACAAAATCTTCATTTATATaGTTTCCAAGTGGTAGTGGCAACCACACCGAGAGAGGATCCAGA | + |
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Preference number: 2 (lower is better) Translates to: YKYRIEGRETKSSFI*FPSGSGNHTERGSR Trigger: TCTGGATCCTCTCTCGGTGTGGTTGCCACTACCACTTGGAAACAATATAAATGAAGATTTTGTTTCTCTGCCCTCTATTCTGTACTTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR-3UTR GCA 90 bp | ACACATTTTCTAAACCAGAACAGTTCCTTCCTAGAACTAACCACATTCATTCAATTGGTCTCTCAGAACTaGAGACCCAGAGAGTCTATC | + |
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Preference number: 2 (lower is better) Translates to: THFLNQNSSFLELTTFIQLVSQN*RPRESI Trigger: GATAGACTCTCTGGGTCTGCAGTTCTGAGAGACCAA...TTGAATGAATGTGGTTAGTTCTAGGAAGGAACTGTTCTGGTTTAGAAAATGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR CCA 72 bp | CGAGGGAGAGTCACAGGGCACAGTGGCACCGAGGGTTaGAAAGGGGCAGCCTCCATACAGGCAGGACCAAGG | + |
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Preference number: 3 (lower is better) Translates to: RGRVTGHSGTEG*KGAASIQAGPR Trigger: CCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTCCAACCCTCGGTGCCACTGTGCCCTGTGACTCTCCCTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019974.5 ENSMUST00000220018.3 |
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| 3UTR-3UTR CAA 90 bp | GGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGAGACACGTCAGAGTGACTTCATaGTACAACAGCTATGTGTTA | + |
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Preference number: 3 (lower is better) Translates to: GSLHTGRTKETAHGAQRHVRVTS*YNSYVL Trigger: TAACACATAGCTGTTGTACAATGAAGTCACTCTGAC...GTGTCTCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR CCA 72 bp | TCCATCTGGGAAGGACTCTGGCTGTTGTCCTTCTTCTaGTCACATTTGTTAGCTAGGAGGACAGCAGGAATG | + |
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Preference number: 3 (lower is better) Translates to: SIWEGLWLLSFF*SHLLARRTAGM Trigger: CATTCCTGCTGTCCTCCTAGCTAACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR CCA 72 bp | CCAGTGAAGCCATGGTCTTTACAAAACTGGTCCATCTaGGAAGGACTCTGGCTGTTGTCCTTCTTCTGGTCA | + |
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Preference number: 3 (lower is better) Translates to: PVKPWSLQNWSI*EGLWLLSFFWS Trigger: TGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGACCAGTTTTGTAAAGACCATGGCTTCACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR-3UTR CAA 90 bp | AAGCGGGTGGCCTCGTCGATGTTTATATTATCCTTGGCAGAGGTTTCAAACCATGAAGGACTCTGGCTGTaGTCCTTCTTCTGGTCACAT | + |
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Preference number: 3 (lower is better) Translates to: KRVASSMFILSLAEVSNHEGLWL*SFFWSH Trigger: ATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTC...ATGGTTTGAAACCTCTGCCAAGGATAATATAAACATCGACGAGGCCACCCGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR TCA 72 bp | TCAAAGGCTGTAAACATTAGTTTGCATTTGGCAGTATaGCAAGAGCCTGAGGGGTCCTCGGGTAAAGTCACA | + |
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Preference number: 3 (lower is better) Translates to: SKAVNISLHLAV*QEPEGSSGKVT Trigger: TGTGACTTTACCCGAGGACCCCTCAGGCTCTTGTCATACTGCCAAATGCAAACTAATGTTTACAGCCTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR CCA 72 bp | TGGTCTTTACAAAACTGGTCCATCTGGGAAGGACTCTaGCTGTTGTCCTTCTTCTGGTCACATTTGTTAGCT | + |
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Preference number: 3 (lower is better) Translates to: WSLQNWSIWEGL*LLSFFWSHLLA Trigger: AGCTAACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGACCAGTTTTGTAAAGACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR GCA 72 bp | ATTCTGTCCAGGTCGATTTCTTCACTAGGAAAACTTTaGTGGTTTGCAAGCATGTTTTCCACTAGGAAGCGG | + |
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Preference number: 3 (lower is better) Translates to: ILSRSISSLGKL*WFASMFSTRKR Trigger: CCGCTTCCTAGTGGAAAACATGCTTGCAAACCAGCAAAGTTTTCCTAGTGAAGAAATCGACCTGGACAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR TCA 72 bp | GTATACTCGAGTCATGTTGCCAAACCGTTCCTGTCCTaGCTTCAGAATAAACTGGTGGAATTAAGGACTTTC | + |
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Preference number: 3 (lower is better) Translates to: VYSSHVAKPFLS*LQNKLVELRTF Trigger: GAAAGTCCTTAATTCCACCAGTTTATTCTGAAGTCAGGACAGGAACGGTTTGGCAACATGACTCGAGTATAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| CDS-3UTR CCA 90 bp | GGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGAGACGGAGGACAGCAGGAATaGGGCTGCCGTTGGGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: GAASIQAGPRRQHMGHRDGGQQE*GCRWED Trigger: ATCTTCCCAACGGCAGCCCCATTCCTGCTGTCCTCC...GTCTCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR CCA 90 bp | AGGGTTGGAAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGAGTCCACGCCAATGGTaGCGCGGTAGTGCTGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: RVGKGQPPYRQDQGDSTWSPRQW*RGSAGR Trigger: TCTCCCAGCACTACCGCGCCACCATTGGCGTGGACT...CCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTCCAACCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019974.5 ENSMUST00000220018.3 |
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| CDS-3UTR CCA 90 bp | GGCACCGAGGGTTGGAAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGATCTGGGAAGGACTCTaGCTGTTGTCCTTCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: GTEGWKGAASIQAGPRRQIWEGL*LLSFFW Trigger: CCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGAT...CTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTCCAACCCTCGGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR TCA 90 bp | GGGTTGGAAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGCTGCCGTTGGGAAGATaGACTTTACTATCCAGATCG | + |
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Preference number: 4 (lower is better) Translates to: GLERGSLHTGRTKETAHGLPLGR*TLLSRS Trigger: CGATCTGGATAGTAAAGTTCATCTTCCCAACGGCAG...CCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTCCAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR CCA 90 bp | ACTGGTCCATCTGGGAAGGACTCTGGCTGTTGTCCTTCTTCTGGTCACATTTGTAGTCCACGCCAATGGTaGCGCGGTAGTGCTGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: TGPSGKDSGCCPSSGHICSPRQW*RGSAGR Trigger: TCTCCCAGCACTACCGCGCCACCATTGGCGTGGACT...ACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGACCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| CDS-3UTR CCA 90 bp | GGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGAGACAGAATGGGGCTGCCGTTaGGAAGATGAACTTTACTAT | + |
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Preference number: 4 (lower is better) Translates to: GQPPYRQDQGDSTWGTETEWGCR*EDELYY Trigger: ATAGTAAAGTTCATCTTCCCAACGGCAGCCCCATTC...TGTCTCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR CCA 90 bp | GAAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGTGGTCTTTACAAAACTaGTCCATCTGGGAAGGACTC | + |
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Preference number: 4 (lower is better) Translates to: ERGSLHTGRTKETAHGAQWSLQN*SIWEGL Trigger: GAGTCCTTCCCAGATGGACCAGTTTTGTAAAGACCA...CTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR CCA 90 bp | GAAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGCATCCAGTGAAGCCATaGTCTTTACAAAACTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: ERGSLHTGRTKETAHGAQHPVKP*SLQNWS Trigger: GGACCAGTTTTGTAAAGACCATGGCTTCACTGGATG...CTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR CAA 72 bp | GAAGGACTCTGGCTGTTGTCCTTCTTCTGGTCACATTaGTTAGCTAGGAGGACAGCAGGAATGGGGCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: EGLWLLSFFWSH*LARRTAGMGLP Trigger: CGGCAGCCCCATTCCTGCTGTCCTCCTAGCTAACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| CDS-3UTR CCA 90 bp | AAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGACTGTTGTCCTTCTTCTaGTCACATTTGTTAGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: KGAASIQAGPRRQHMGHRLLSFF*SHLLAR Trigger: CCTAGCTAACAAATGTGACCAGAAGAAGGACAACAG...TCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR TCA 90 bp | GTCACAGGGCCTCTCATGGGAACAGTTCTCCATGGATCTTCAGATGGGCGGTGCTTTCAAACCATCCAGTaGAGCCATGGTCTTTACAAA | + |
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Preference number: 4 (lower is better) Translates to: VTGPLMGTVLHGSSDGRCFQTIQ*SHGLYK Trigger: TTTGTAAAGACCATGGCTTCACTGGATGGTTTGAAA...GCACCGCCCATCTGAAGATCCATGGAGAACTGTTCCCATGAGAGGCCCTGTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR GCA 90 bp | GGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGAGACACATCAAAGACTACAAATaGTCCAAGAGCTTCCTTATA | + |
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Preference number: 4 (lower is better) Translates to: GSLHTGRTKETAHGAQRHIKDYK*SKSFLI Trigger: TATAAGGAAGCTCTTGGAGCATTTGTAGTCTTTGAT...GTGTCTCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR GCA 90 bp | AAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGATCACTAGGAAAACTTTaGTGGTTTGCAAGCATGTTT | + |
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Preference number: 4 (lower is better) Translates to: KGAASIQAGPRRQHMGHRSLGKL*WFASMF Trigger: AAACATGCTTGCAAACCAGCAAAGTTTTCCTAGTGA...TCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR CCA 90 bp | AAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGAGTGTTTATATTATCCTTaGCAGAGGTTTCAAACCATC | + |
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Preference number: 4 (lower is better) Translates to: KGQPPYRQDQGDSTWGTECLYYP*QRFQTI Trigger: GATGGTTTGAAACCTCTGCCAAGGATAATATAAACA...CTCTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR CAA 72 bp | AACTTGCAATGTAGCCAAGATATGCACTCCCACCCTTaGTCTCTGTCTCCTGCAGGCTGGGATGACAGATGT | + |
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Preference number: 4 (lower is better) Translates to: NLQCSQDMHSHP*SLSPAGWDDRC Trigger: ACATCTGTCATCCCAGCCTGCAGGAGACAGAGACAAAGGGTGGGAGTGCATATCTTGGCTACATTGCAAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| 3UTR CAA 72 bp | AGGAAGCGGGTGGCCTCGTCGATGTTTATATTATCCTaGGCAGAGGTTTCAAACCATCCAGTGAAGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: RKRVASSMFILS*AEVSNHPVKPW Trigger: CCATGGCTTCACTGGATGGTTTGAAACCTCTGCCAAGGATAATATAAACATCGACGAGGCCACCCGCTTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| 3UTR CAA 72 bp | TTACAAAACTGGTCCATCTGGGAAGGACTCTGGCTGTaGTCCTTCTTCTGGTCACATTTGTTAGCTAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LQNWSIWEGLWL*SFFWSHLLARR Trigger: CCTCCTAGCTAACAAATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTCCCAGATGGACCAGTTTTGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220018.3 |
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| CDS-3UTR GCA 90 bp | AACCAGAACAGTTCCTTCCTAGAACTAACCACATTCATTCAACACACAGGCTTACAGCAGGAATGGGGCTaGCGTTGGGAAGATGAACTT | + |
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Preference number: 4 (lower is better) Translates to: NQNSSFLELTTFIQHTGLQQEWG*RWEDEL Trigger: AAGTTCATCTTCCCAACGGCAGCCCCATTCCTGCTG...TAAGCCTGTGTGTTGAATGAATGTGGTTAGTTCTAGGAAGGAACTGTTCTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS GCA 90 bp | GTCTTACCCACGCCGAGCTCGCCGATGACCAGCACCTTAAAGAGGTaGTCTCGGGTCTCCGGCGCCGCGGTGGCCGACGCGCCCTGTTGC | + |
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Preference number: 5 (lower is better) Translates to: VLPTPSSPMTSTLKR*SRVSGAAVADAPCC Trigger: GCAACAGGGCGCGTCGGCCACCGCGGCGCCGGAGACCCGAGAGCACCTCTTTAAGGTGCTGGTCATCGGCGAGCTCGGCGTGGGTAAGAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019974.5 ENSMUST00000220018.3 |
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| CDS-3UTR CAA 90 bp | AGGGTTGGAAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGTCCTGCTGTCCCAGTaGAGAACTTTGAGGGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: RVGKGQPPYRQDQGDSTWVLLSQ*RTLRAK Trigger: CTTCGCCCTCAAAGTTCTCAACTGGGACAGCAGGAC...CCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTCCAACCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019974.5 ENSMUST00000220018.3 |
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| CDS-3UTR CAA 90 bp | GAAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGGCACAGGAAGGACTCTGGCTGTaGTCCTTCTTCTGGTCACAT | + |
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Preference number: 5 (lower is better) Translates to: ERGSLHTGRTKETAHGAQEGLWL*SFFWSH Trigger: ATGTGACCAGAAGAAGGACAACAGCCAGAGTCCTTC...CTGTGCCCCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR CAA 90 bp | AGGGTTGGAAAGGGGCAGCCTCCATACAGGCAGGACCAAGGAGACAGCACATGGGAAAACTTTGCTGGTTaGCAAGCATGTTTTCCACTA | + |
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Preference number: 5 (lower is better) Translates to: RVGKGQPPYRQDQGDSTWENFAG*QACFPL Trigger: TAGTGGAAAACATGCTTGCAAACCAGCAAAGTTTTC...CCATGTGCTGTCTCCTTGGTCCTGCCTGTATGGAGGCTGCCCCTTTCCAACCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR CAA 90 bp | ACACATTTTCTAAACCAGAACAGTTCCTTCCTAGAACTAACCACATTCATTCAAGTCCTGCTGTCCCAGTaGAGAACTTTGAGGGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: THFLNQNSSFLELTTFIQVLLSQ*RTLRAK Trigger: CTTCGCCCTCAAAGTTCTCAACTGGGACAGCAGGAC...TTGAATGAATGTGGTTAGTTCTAGGAAGGAACTGTTCTGGTTTAGAAAATGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS-3UTR CAA 90 bp | ACACATTTTCTAAACCAGAACAGTTCCTTCCTAGAACTAACCACATTCATTCAATTCTTCTGGTCACATTaGTTAGCTAGGAGGACAGCA | + |
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Preference number: 5 (lower is better) Translates to: THFLNQNSSFLELTTFIQFFWSH*LARRTA Trigger: TGCTGTCCTCCTAGCTAACAAATGTGACCAGAAGAA...TTGAATGAATGTGGTTAGTTCTAGGAAGGAACTGTTCTGGTTTAGAAAATGTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019974.5 |
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| CDS GCA 72 bp | ACGCCGAGCTCGCCGATGACCAGCACCTTAAAGAGGTaGTCTCGGGTCTCCGGCGCCGCGGTGGCCGACGCG | + |
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Preference number: 6 (lower is better) Translates to: TPSSPMTSTLKR*SRVSGAAVADA Trigger: CGCGTCGGCCACCGCGGCGCCGGAGACCCGAGAGCACCTCTTTAAGGTGCTGGTCATCGGCGAGCTCGGCGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019974.5 ENSMUST00000220018.3 |
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