Pregenerated sensors for RAB2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047187Ensembl transcript IDs: ENSMUST00000060232.8
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR-3UTR TCA 90 bp | GGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTCATGAGGAAAGAGGGTaGCAGAGTGCGTGGCTCCAC | + |
Preference number: 2 (lower is better) Translates to: GRVSGMACLLRVGLALGSHEERG*QSAWLH Trigger: GTGGAGCCACGCACTCTGTCACCCTCTTTCCTCATG...ACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
3UTR-3UTR GCA 90 bp | GTGTCTAAGGGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTAAGAGGGTGACAGAGTaGGTGGCTCCACTGGGCAGC | + |
Preference number: 2 (lower is better) Translates to: VSKGRVSGMACLLRVGLAKRVTE*VAPLGS Trigger: GCTGCCCAGTGGAGCCACGCACTCTGTCACCCTCTT...AGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCCCTTAGACAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
3UTR CAA 90 bp | AAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTaGTGTAGTGTTGGAGTTTCTGTTTCTGCCCGTCCCACTCATTAC | + |
Preference number: 2 (lower is better) Translates to: KWHGVPSPSGPCSWE*CSVGVSVSARPTHY Trigger: GTAATGAGTGGGACGGGCAGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
3UTR-3UTR CCA 90 bp | GGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTATTAGAGTTCAAGCTTaGCAAATCACACCCAAGCAG | + |
Preference number: 2 (lower is better) Translates to: GRVSGMACLLRVGLALGSIRVQA*QITPKQ Trigger: CTGCTTGGGTGTGATTTGCCAAGCTTGAACTCTAAT...ACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
3UTR CCA 72 bp | TGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTaGGAGTTGTGTAGTGTTGGAGTTTCTGTTTCTGCC | + |
Preference number: 3 (lower is better) Translates to: WHGVPSPSGPCS*ELCSVGVSVSA Trigger: GGCAGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
3UTR GCA 72 bp | AGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTaGTCTTGGGAGTTGTGTAGTGTTGGAGTTTCTGTT | + |
Preference number: 3 (lower is better) Translates to: SKWHGVPSPSGP*SWELCSVGVSV Trigger: AACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
3UTR GCA 72 bp | ATTATTGTGTCTAAGGGAAGAGTAAGTGGCATGGCGTaGCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTTGT | + |
Preference number: 3 (lower is better) Translates to: IIVSKGRVSGMA*LLRVGLALGSC Trigger: ACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCCCTTAGACACAATAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
3UTR CAA 72 bp | GGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTaGTGTAGTGTTGGAGTTTCTGTTTCTGCCCGTCCC | + |
Preference number: 4 (lower is better) Translates to: GVPSPSGPCSWE*CSVGVSVSARP Trigger: GGGACGGGCAGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
CDS-3UTR TCA 90 bp | GTGTCTAAGGGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTTTGGAATTGGAATGCTaGCGGGCATCTTCTAACCAG | + |
Preference number: 4 (lower is better) Translates to: VSKGRVSGMACLLRVGLALELEC*RASSNQ Trigger: CTGGTTAGAAGATGCCCGTCAGCATTCCAATTCCAA...AGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCCCTTAGACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
CDS-3UTR CCA 90 bp | CTGAGCATGAGGAAAGAGGGTGACAGAGTGCGTGGCTCCACTGGGCAGCTAGCCGCTGTATCCCAGATCTaGAGTTTTATCTGTTTCCCA | + |
Preference number: 4 (lower is better) Translates to: LSMRKEGDRVRGSTGQLAAVSQI*SFICFP Trigger: TGGGAAACAGATAAAACTCCAGATCTGGGATACAGC...GGCTAGCTGCCCAGTGGAGCCACGCACTCTGTCACCCTCTTTCCTCATGCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
3UTR CAA 72 bp | CTCCGAGTGGGCCTTGCTCTTGGGAGTTGTGTAGTGTaGGAGTTTCTGTTTCTGCCCGTCCCACTCATTACA | + |
Preference number: 4 (lower is better) Translates to: LRVGLALGSCVV*EFLFLPVPLIT Trigger: TGTAATGAGTGGGACGGGCAGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
CDS-3UTR GCA 90 bp | TCTCCGAGTGGGCCTTGCTCTTGGGAGTTGTGTAGTGTTGGAGTTTCTGTTTCTGCTGTCCGCCTTGGTTaGTTCCATGAGATGCGTTGG | + |
Preference number: 4 (lower is better) Translates to: SPSGPCSWELCSVGVSVSAVRLG*FHEMRW Trigger: CCAACGCATCTCATGGAAGCAACCAAGGCGGACAGC...AGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
CDS-3UTR TCA 90 bp | TCTCCGAGTGGGCCTTGCTCTTGGGAGTTGTGTAGTGTTGGAGTTTCTGTTTCTAGGTCATGCACCGGCTaGAACCTCTTGTCTGTAAAC | + |
Preference number: 4 (lower is better) Translates to: SPSGPCSWELCSVGVSVSRSCTG*NLLSVN Trigger: GTTTACAGACAAGAGGTTTCAGCCGGTGCATGACCT...AGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
CDS-3UTR GCA 90 bp | GTTTCTGTTTCTGCCCGTCCCACTCATTACACTGTGTTTTACCCAACAGCACTCAAAGGACTCCTGCCCTaGTGTATCCCAGATCTGGAG | + |
Preference number: 4 (lower is better) Translates to: VSVSARPTHYTVFYPTALKGLLP*CIPDLE Trigger: CTCCAGATCTGGGATACAGCAGGGCAGGAGTCCTTT...GAGTGCTGTTGGGTAAAACACAGTGTAATGAGTGGGACGGGCAGAAACAGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
CDS-3UTR GCA 90 bp | GTGTCTAAGGGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTTGCTGTGTTAATAAATaGCTCCTCTACATTAGACGC | + |
Preference number: 4 (lower is better) Translates to: VSKGRVSGMACLLRVGLACCVNK*LLYIRR Trigger: GCGTCTAATGTAGAGGAGGCATTTATTAACACAGCA...AGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCCCTTAGACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
CDS-3UTR CCA 90 bp | GTTGGAGTTTCTGTTTCTGCCCGTCCCACTCATTACACTGTGTTTTACCCAACAAACCAGGTTGTCAAGTaGTTGAACGTGTCTCTCCTT | + |
Preference number: 4 (lower is better) Translates to: VGVSVSARPTHYTVFYPTNQVVK*LNVSLL Trigger: AAGGAGAGACACGTTCAACCACTTGACAACCTGGTT...TGTTGGGTAAAACACAGTGTAATGAGTGGGACGGGCAGAAACAGAAACTCCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
CDS-3UTR CAA 90 bp | GTTTCTGTTTCTGCCCGTCCCACTCATTACACTGTGTTTTACCCAACAGCACTCCAGGTTGTCAAGTGGTaGAACGTGTCTCTCCTTGTA | + |
Preference number: 5 (lower is better) Translates to: VSVSARPTHYTVFYPTALQVVKW*NVSLLV Trigger: TACAAGGAGAGACACGTTCAACCACTTGACAACCTG...GAGTGCTGTTGGGTAAAACACAGTGTAATGAGTGGGACGGGCAGAAACAGAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |
||
CDS-3UTR CAA 90 bp | GTTGGAGTTTCTGTTTCTGCCCGTCCCACTCATTACACTGTGTTTTACCCAACAACATTAGACGCAGTCTaGGCAGAAGTTTCCATGAAG | + |
Preference number: 5 (lower is better) Translates to: VGVSVSARPTHYTVFYPTTLDAV*AEVSMK Trigger: CTTCATGGAAACTTCTGCCAAGACTGCGTCTAATGT...TGTTGGGTAAAACACAGTGTAATGAGTGGGACGGGCAGAAACAGAAACTCCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060232.8 |