RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAB2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047187

Ensembl transcript IDs: ENSMUST00000060232.8

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTCATGAGGAAAGAGGGTaGCAGAGTGCGTGGCTCCAC +
Preference number: 2 (lower is better)
Translates to: GRVSGMACLLRVGLALGSHEERG*QSAWLH
Trigger: GTGGAGCCACGCACTCTGTCACCCTCTTTCCTCATG...ACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
3UTR-3UTR GCA 90 bp GTGTCTAAGGGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTAAGAGGGTGACAGAGTaGGTGGCTCCACTGGGCAGC +
Preference number: 2 (lower is better)
Translates to: VSKGRVSGMACLLRVGLAKRVTE*VAPLGS
Trigger: GCTGCCCAGTGGAGCCACGCACTCTGTCACCCTCTT...AGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCCCTTAGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
3UTR CAA 90 bp AAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTaGTGTAGTGTTGGAGTTTCTGTTTCTGCCCGTCCCACTCATTAC +
Preference number: 2 (lower is better)
Translates to: KWHGVPSPSGPCSWE*CSVGVSVSARPTHY
Trigger: GTAATGAGTGGGACGGGCAGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
3UTR-3UTR CCA 90 bp GGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTATTAGAGTTCAAGCTTaGCAAATCACACCCAAGCAG +
Preference number: 2 (lower is better)
Translates to: GRVSGMACLLRVGLALGSIRVQA*QITPKQ
Trigger: CTGCTTGGGTGTGATTTGCCAAGCTTGAACTCTAAT...ACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
3UTR CCA 72 bp TGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTaGGAGTTGTGTAGTGTTGGAGTTTCTGTTTCTGCC +
Preference number: 3 (lower is better)
Translates to: WHGVPSPSGPCS*ELCSVGVSVSA
Trigger: GGCAGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
3UTR GCA 72 bp AGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTaGTCTTGGGAGTTGTGTAGTGTTGGAGTTTCTGTT +
Preference number: 3 (lower is better)
Translates to: SKWHGVPSPSGP*SWELCSVGVSV
Trigger: AACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
3UTR GCA 72 bp ATTATTGTGTCTAAGGGAAGAGTAAGTGGCATGGCGTaGCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTTGT +
Preference number: 3 (lower is better)
Translates to: IIVSKGRVSGMA*LLRVGLALGSC
Trigger: ACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCCCTTAGACACAATAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
3UTR CAA 72 bp GGCGTGCCTTCTCCGAGTGGGCCTTGCTCTTGGGAGTaGTGTAGTGTTGGAGTTTCTGTTTCTGCCCGTCCC +
Preference number: 4 (lower is better)
Translates to: GVPSPSGPCSWE*CSVGVSVSARP
Trigger: GGGACGGGCAGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGAAGGCACGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
CDS-3UTR TCA 90 bp GTGTCTAAGGGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTTTGGAATTGGAATGCTaGCGGGCATCTTCTAACCAG +
Preference number: 4 (lower is better)
Translates to: VSKGRVSGMACLLRVGLALELEC*RASSNQ
Trigger: CTGGTTAGAAGATGCCCGTCAGCATTCCAATTCCAA...AGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCCCTTAGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
CDS-3UTR CCA 90 bp CTGAGCATGAGGAAAGAGGGTGACAGAGTGCGTGGCTCCACTGGGCAGCTAGCCGCTGTATCCCAGATCTaGAGTTTTATCTGTTTCCCA +
Preference number: 4 (lower is better)
Translates to: LSMRKEGDRVRGSTGQLAAVSQI*SFICFP
Trigger: TGGGAAACAGATAAAACTCCAGATCTGGGATACAGC...GGCTAGCTGCCCAGTGGAGCCACGCACTCTGTCACCCTCTTTCCTCATGCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
3UTR CAA 72 bp CTCCGAGTGGGCCTTGCTCTTGGGAGTTGTGTAGTGTaGGAGTTTCTGTTTCTGCCCGTCCCACTCATTACA +
Preference number: 4 (lower is better)
Translates to: LRVGLALGSCVV*EFLFLPVPLIT
Trigger: TGTAATGAGTGGGACGGGCAGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
CDS-3UTR GCA 90 bp TCTCCGAGTGGGCCTTGCTCTTGGGAGTTGTGTAGTGTTGGAGTTTCTGTTTCTGCTGTCCGCCTTGGTTaGTTCCATGAGATGCGTTGG +
Preference number: 4 (lower is better)
Translates to: SPSGPCSWELCSVGVSVSAVRLG*FHEMRW
Trigger: CCAACGCATCTCATGGAAGCAACCAAGGCGGACAGC...AGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
CDS-3UTR TCA 90 bp TCTCCGAGTGGGCCTTGCTCTTGGGAGTTGTGTAGTGTTGGAGTTTCTGTTTCTAGGTCATGCACCGGCTaGAACCTCTTGTCTGTAAAC +
Preference number: 4 (lower is better)
Translates to: SPSGPCSWELCSVGVSVSRSCTG*NLLSVN
Trigger: GTTTACAGACAAGAGGTTTCAGCCGGTGCATGACCT...AGAAACAGAAACTCCAACACTACACAACTCCCAAGAGCAAGGCCCACTCGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
CDS-3UTR GCA 90 bp GTTTCTGTTTCTGCCCGTCCCACTCATTACACTGTGTTTTACCCAACAGCACTCAAAGGACTCCTGCCCTaGTGTATCCCAGATCTGGAG +
Preference number: 4 (lower is better)
Translates to: VSVSARPTHYTVFYPTALKGLLP*CIPDLE
Trigger: CTCCAGATCTGGGATACAGCAGGGCAGGAGTCCTTT...GAGTGCTGTTGGGTAAAACACAGTGTAATGAGTGGGACGGGCAGAAACAGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
CDS-3UTR GCA 90 bp GTGTCTAAGGGAAGAGTAAGTGGCATGGCGTGCCTTCTCCGAGTGGGCCTTGCTTGCTGTGTTAATAAATaGCTCCTCTACATTAGACGC +
Preference number: 4 (lower is better)
Translates to: VSKGRVSGMACLLRVGLACCVNK*LLYIRR
Trigger: GCGTCTAATGTAGAGGAGGCATTTATTAACACAGCA...AGCAAGGCCCACTCGGAGAAGGCACGCCATGCCACTTACTCTTCCCTTAGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
CDS-3UTR CCA 90 bp GTTGGAGTTTCTGTTTCTGCCCGTCCCACTCATTACACTGTGTTTTACCCAACAAACCAGGTTGTCAAGTaGTTGAACGTGTCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: VGVSVSARPTHYTVFYPTNQVVK*LNVSLL
Trigger: AAGGAGAGACACGTTCAACCACTTGACAACCTGGTT...TGTTGGGTAAAACACAGTGTAATGAGTGGGACGGGCAGAAACAGAAACTCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
CDS-3UTR CAA 90 bp GTTTCTGTTTCTGCCCGTCCCACTCATTACACTGTGTTTTACCCAACAGCACTCCAGGTTGTCAAGTGGTaGAACGTGTCTCTCCTTGTA +
Preference number: 5 (lower is better)
Translates to: VSVSARPTHYTVFYPTALQVVKW*NVSLLV
Trigger: TACAAGGAGAGACACGTTCAACCACTTGACAACCTG...GAGTGCTGTTGGGTAAAACACAGTGTAATGAGTGGGACGGGCAGAAACAGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8
CDS-3UTR CAA 90 bp GTTGGAGTTTCTGTTTCTGCCCGTCCCACTCATTACACTGTGTTTTACCCAACAACATTAGACGCAGTCTaGGCAGAAGTTTCCATGAAG +
Preference number: 5 (lower is better)
Translates to: VGVSVSARPTHYTVFYPTTLDAV*AEVSMK
Trigger: CTTCATGGAAACTTCTGCCAAGACTGCGTCTAATGT...TGTTGGGTAAAACACAGTGTAATGAGTGGGACGGGCAGAAACAGAAACTCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060232.8