Pregenerated sensors for RAB28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029128Ensembl transcript IDs: ENSMUST00000031011.12, ENSMUST00000201422.4, ENSMUST00000202913.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACGTGTGGTTCCAAATCGCACTCCTTCCGGTCCAGGGAGCTGCCTaGTCCCTCAGGCAACTAAAGGATGAAGGAGCAGAGCAGGAGGAA | + |
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Preference number: 1 (lower is better) Translates to: NVWFQIALLPVQGAA*SLRQLKDEGAEQEE Trigger: TTCCTCCTGCTCTGCTCCTTCATCCTTTAGTTGCCTGAGGGATCAGGCAGCTCCCTGGACCGGAAGGAGTGCGATTTGGAACCACACGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR TCA 90 bp | GCTTTGTATATTGTACTCTCAATAGCCAGCAAAGGAACACCTTCTTaGGAGGCTTTCACCATCAGCGCTCTGAAGTACACTTTCACATAC | + |
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Preference number: 1 (lower is better) Translates to: ALYIVLSIASKGTPS*EAFTISALKYTFTY Trigger: GTATGTGAAAGTGTACTTCAGAGCGCTGATGGTGAAAGCCTCTCAAGAAGGTGTTCCTTTGCTGGCTATTGAGAGTACAATATACAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR-3UTR CCA 90 bp | GTTCCAAATCGCACTCCTTCCGGTCCAGGGAGCTGCCTGATCCCTCAGGCAACTACGTTCCTAGGCAGCTaGGGCCCAATTCAGGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: VPNRTPSGPGSCLIPQATTFLGS*GPIQGK Trigger: CTTCCCCTGAATTGGGCCCCAGCTGCCTAGGAACGT...AGTTGCCTGAGGGATCAGGCAGCTCCCTGGACCGGAAGGAGTGCGATTTGGAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR-3UTR GCA 90 bp | GAGAAGGAAGCAACATGGTTCTTCTGGAGTGAGGAGGCAGTCTCAATCCAGAGAGTGTGCTCACTGCACTaGACACATGGAGCTCCGAGG | + |
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Preference number: 2 (lower is better) Translates to: EKEATWFFWSEEAVSIQRVCSLH*THGAPR Trigger: CCTCGGAGCTCCATGTGTGCAGTGCAGTGAGCACAC...TCTCTGGATTGAGACTGCCTCCTCACTCCAGAAGAACCATGTTGCTTCCTTCTC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201422.4 |
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| 3UTR-3UTR CCA 90 bp | AGTCTCAATCCAGAGAATGGACTCTCCATTCGGATTTCAAAACGTGTGGTTCCAACGTTCCTAGGCAGCTaGGGCCCAATTCAGGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: SLNPENGLSIRISKRVVPTFLGS*GPIQGK Trigger: CTTCCCCTGAATTGGGCCCCAGCTGCCTAGGAACGT...TGGAACCACACGTTTTGAAATCCGAATGGAGAGTCCATTCTCTGGATTGAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR-3UTR CCA 90 bp | AGAAGGAAGCAACATGGTTCTTCTGGAGTGAGGAGGCAGTCTCAATCCAGAGAAGCAACATGGTTCTTCTaGAGTGAGGAGGCAGTCTCA | + |
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Preference number: 2 (lower is better) Translates to: RRKQHGSSGVRRQSQSREATWFF*SEEAVS Trigger: TGAGACTGCCTCCTCACTCCAGAAGAACCATGTTGC...TTCTCTGGATTGAGACTGCCTCCTCACTCCAGAAGAACCATGTTGCTTCCTTCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR-3UTR GCA 90 bp | ATCCAGAGAATGGACTCTCCATTCGGATTTCAAAACGTGTGGTTCCAAATCGCAACAGTGTGTGCTCACTaGACTGCACACATGGAGCTC | + |
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Preference number: 2 (lower is better) Translates to: IQRMDSPFGFQNVWFQIATVCAH*TAHMEL Trigger: GAGCTCCATGTGTGCAGTGCAGTGAGCACACACTGT...TGCGATTTGGAACCACACGTTTTGAAATCCGAATGGAGAGTCCATTCTCTGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201422.4 |
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| 3UTR-3UTR CCA 90 bp | ATGATCCAAGGAGATCATGACTCATCTGGAAGCACTCTCATACAGTCTGTAGGAGAGAAGGAAGCAACATaGTTCTTCTGGAGTGAGGAG | + |
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Preference number: 2 (lower is better) Translates to: MIQGDHDSSGSTLIQSVGEKEAT*FFWSEE Trigger: CTCCTCACTCCAGAAGAACCATGTTGCTTCCTTCTC...TCCTACAGACTGTATGAGAGTGCTTCCAGATGAGTCATGATCTCCTTGGATCAT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR-3UTR CCA 90 bp | TTTGTATATTGTACTCTCAATAGCCAGCAAAGGAACACCTTCTTGAGAGGCTTTGAGAAGGAAGCAACATaGTTCTTCTGGAGTGAGGAG | + |
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Preference number: 2 (lower is better) Translates to: FVYCTLNSQQRNTFLRGFEKEAT*FFWSEE Trigger: CTCCTCACTCCAGAAGAACCATGTTGCTTCCTTCTC...AAAGCCTCTCAAGAAGGTGTTCCTTTGCTGGCTATTGAGAGTACAATATACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR-3UTR TCA 90 bp | ATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGATCCCCAATGAGTTCAGATAGAAAATaGTCATCAAAGCTTGGAGCA | + |
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Preference number: 2 (lower is better) Translates to: IYLRKPSAQQVQCDRSPMSSDRK*SSKLGA Trigger: TGCTCCAAGCTTTGATGATCATTTTCTATCTGAACT...CATTGGGGATCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR-3UTR GCA 90 bp | TTTGTATATTGTACTCTCAATAGCCAGCAAAGGAACACCTTCTTGAGAGGCTTTTATCAATACAGTGTGTaGTCACTGCACTGCACACAT | + |
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Preference number: 2 (lower is better) Translates to: FVYCTLNSQQRNTFLRGFYQYSV*SLHCTH Trigger: ATGTGTGCAGTGCAGTGAGCACACACTGTATTGATA...AAAGCCTCTCAAGAAGGTGTTCCTTTGCTGGCTATTGAGAGTACAATATACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201422.4 |
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| 3UTR TCA 72 bp | TTCCAAATCGCACTCCTTCCGGTCCAGGGAGCTGCCTaGTCCCTCAGGCAACTAAAGGATGAAGGAGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: FQIALLPVQGAA*SLRQLKDEGAE Trigger: CTCTGCTCCTTCATCCTTTAGTTGCCTGAGGGATCAGGCAGCTCCCTGGACCGGAAGGAGTGCGATTTGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR TCA 72 bp | GTGAAGAGAGAAGGAAGCAACATGGTTCTTCTGGAGTaGGGAGGCAGTCTCAATCCAGAGAATGGACTCTCC | + |
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Preference number: 3 (lower is better) Translates to: VKREGSNMVLLE*GGSLNPENGLS Trigger: GGAGAGTCCATTCTCTGGATTGAGACTGCCTCCTCACTCCAGAAGAACCATGTTGCTTCCTTCTCTCTTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| 3UTR TCA 72 bp | CATCTGCACAACAGGTCCAGTGTGATCGATCCCCAATaGTCCAAGGAGATCATGACTCATCTGGAAGCACTC | + |
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Preference number: 3 (lower is better) Translates to: HLHNRSSVIDPQ*SKEIMTHLEAL Trigger: GAGTGCTTCCAGATGAGTCATGATCTCCTTGGATCATTGGGGATCGATCACACTGGACCTGTTGTGCAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR GCA 90 bp | TGGTTCTTCTGGAGTGAGGAGGCAGTCTCAATCCAGAGAATGGACTCTCCATTCAGGTCTTCCCCGAGGTaGCGTCCCCCAGCACGACGA | + |
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Preference number: 4 (lower is better) Translates to: WFFWSEEAVSIQRMDSPFRSSPR*RPPARR Trigger: TCGTCGTGCTGGGGGACGGCACCTCGGGGAAGACCT...GAATGGAGAGTCCATTCTCTGGATTGAGACTGCCTCCTCACTCCAGAAGAACCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR GCA 90 bp | ATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGATCCCCAATGAGGTCTTCCCCGAGGTaGCGTCCCCCAGCACGACGA | + |
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Preference number: 4 (lower is better) Translates to: IYLRKPSAQQVQCDRSPMRSSPR*RPPARR Trigger: TCGTCGTGCTGGGGGACGGCACCTCGGGGAAGACCT...CATTGGGGATCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR TCA 90 bp | GTTCCAAATCGCACTCCTTCCGGTCCAGGGAGCTGCCTGATCCCTCAGGCAACTTTCCCAAATGTCTCTTaGGCAAAACACGTAGCTAAG | + |
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Preference number: 4 (lower is better) Translates to: VPNRTPSGPGSCLIPQATFPNVS*AKHVAK Trigger: CTTAGCTACGTGTTTTGCTCAAGAGACATTTGGGAA...AGTTGCCTGAGGGATCAGGCAGCTCCCTGGACCGGAAGGAGTGCGATTTGGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR GCA 90 bp | TTTATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGATCCCCAAGGTCTTCCCCGAGGTaGCGTCCCCCAGCACGACGA | + |
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Preference number: 4 (lower is better) Translates to: FIYLRKPSAQQVQCDRSPRSSPR*RPPARR Trigger: TCGTCGTGCTGGGGGACGGCACCTCGGGGAAGACCT...TGGGGATCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAATAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR GCA 90 bp | GTTCCAAATCGCACTCCTTCCGGTCCAGGGAGCTGCCTGATCCCTCAGGCAACTCCAAGTCAATTTTATTaGCCACTAAAGCAACCAGGG | + |
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Preference number: 4 (lower is better) Translates to: VPNRTPSGPGSCLIPQATPSQFY*PLKQPG Trigger: CCCTGGTTGCTTTAGTGGGCAATAAAATTGACTTGG...AGTTGCCTGAGGGATCAGGCAGCTCCCTGGACCGGAAGGAGTGCGATTTGGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR GCA 90 bp | CCTAGGCAGCTGGGGCCCAATTCAGGGGAAGAGCAGCCAGAACTATCAATACAGATTTATCCAACATCTTaGCACCTATTGTCTGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: PRQLGPNSGEEQPELSIQIYPTS*HLLSAL Trigger: GAGGGCAGACAATAGGTGGCAAGATGTTGGATAAAT...CTGTATTGATAGTTCTGGCTGCTCTTCCCCTGAATTGGGCCCCAGCTGCCTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR CCA 90 bp | TTTATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGATCCCCATTCAGTTGCCGGTCCTaGCTCTCCTCCTCAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: FIYLRKPSAQQVQCDRSPFSCRS*LSSSES Trigger: AGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAA...TGGGGATCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR CCA 90 bp | ATGATCCAAGGAGATCATGACTCATCTGGAAGCACTCTCATACAGTCTGTAGGAGCAGAGCTGGGGTGTTaGTTATCTTCTTCCGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: MIQGDHDSSGSTLIQSVGAELGC*LSSSGY Trigger: GTACCCGGAAGAAGATAACCAACACCCCAGCTCTGC...TCCTACAGACTGTATGAGAGTGCTTCCAGATGAGTCATGATCTCCTTGGATCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201422.4 |
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| CDS-3UTR TCA 90 bp | TGGTTCTTCTGGAGTGAGGAGGCAGTCTCAATCCAGAGAATGGACTCTCCATTCTTCCCAAATGTCTCTTaGGCAAAACACGTAGCTAAG | + |
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Preference number: 4 (lower is better) Translates to: WFFWSEEAVSIQRMDSPFFPNVS*AKHVAK Trigger: CTTAGCTACGTGTTTTGCTCAAGAGACATTTGGGAA...GAATGGAGAGTCCATTCTCTGGATTGAGACTGCCTCCTCACTCCAGAAGAACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR GCA 90 bp | CAGTGTGATCGATCCCCAATGATCCAAGGAGATCATGACTCATCTGGAAGCACTATTTATCCAACATCTTaGCACCTATTGTCTGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: QCDRSPMIQGDHDSSGSTIYPTS*HLLSAL Trigger: GAGGGCAGACAATAGGTGGCAAGATGTTGGATAAAT...AGTGCTTCCAGATGAGTCATGATCTCCTTGGATCATTGGGGATCGATCACACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR GCA 90 bp | CAGTGTGATCGATCCCCAATGATCCAAGGAGATCATGACTCATCTGGAAGCACTCCAAGTCAATTTTATTaGCCACTAAAGCAACCAGGG | + |
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Preference number: 4 (lower is better) Translates to: QCDRSPMIQGDHDSSGSTPSQFY*PLKQPG Trigger: CCCTGGTTGCTTTAGTGGGCAATAAAATTGACTTGG...AGTGCTTCCAGATGAGTCATGATCTCCTTGGATCATTGGGGATCGATCACACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR CCA 90 bp | TTTGTATATTGTACTCTCAATAGCCAGCAAAGGAACACCTTCTTGAGAGGCTTTTTCAGTTGCCGGTCCTaGCTCTCCTCCTCAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: FVYCTLNSQQRNTFLRGFFSCRS*LSSSES Trigger: AGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAA...AAAGCCTCTCAAGAAGGTGTTCCTTTGCTGGCTATTGAGAGTACAATATACAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR TCA 90 bp | ATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGATCCCCAATGTTCCCAAATGTCTCTTaGGCAAAACACGTAGCTAAG | + |
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Preference number: 4 (lower is better) Translates to: IYLRKPSAQQVQCDRSPMFPNVS*AKHVAK Trigger: CTTAGCTACGTGTTTTGCTCAAGAGACATTTGGGAA...CATTGGGGATCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR TCA 90 bp | ATGATCCAAGGAGATCATGACTCATCTGGAAGCACTCTCATACAGTCTGTAGGACCTGACAATACGCTGTaGCTGTTCTATTTCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: MIQGDHDSSGSTLIQSVGPDNTL*LFYFCF Trigger: AAAGCAGAAATAGAACAGTCACAGCGTATTGTCAGG...TCCTACAGACTGTATGAGAGTGCTTCCAGATGAGTCATGATCTCCTTGGATCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201422.4 |
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| CDS-3UTR GCA 90 bp | TTTATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGATCCCCATCCAGTCCTATCGTCTaGTTGTACTGCTTCCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: FIYLRKPSAQQVQCDRSPSSPIV*LYCFPN Trigger: ATTTGGGAAGCAGTACAAGCAGACGATAGGACTGGA...TGGGGATCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR GCA 90 bp | CTCAATCCAGAGAATGGACTCTCCATTCGGATTTCAAAACGTGTGGTTCCAAATTCCAGTCCTATCGTCTaGTTGTACTGCTTCCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: LNPENGLSIRISKRVVPNSSPIV*LYCFPN Trigger: ATTTGGGAAGCAGTACAAGCAGACGATAGGACTGGA...ATTTGGAACCACACGTTTTGAAATCCGAATGGAGAGTCCATTCTCTGGATTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR CCA 90 bp | AATAAATTTATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGATTCAGTTGCCGGTCCTaGCTCTCCTCCTCAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: NKFIYLRKPSAQQVQCDRFSCRS*LSSSES Trigger: AGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAA...TCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAATAAATTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR GCA 90 bp | CAGTGTGATCGATCCCCAATGATCCAAGGAGATCATGACTCATCTGGAAGCACTTGGCAAAATCGTAAGTaGTTATCAGCTTTTACTGTT | + |
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Preference number: 4 (lower is better) Translates to: QCDRSPMIQGDHDSSGSTWQNRK*LSAFTV Trigger: AACAGTAAAAGCTGATAAGCACTTACGATTTTGCCA...AGTGCTTCCAGATGAGTCATGATCTCCTTGGATCATTGGGGATCGATCACACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR GCA 90 bp | CTCAATCCAGAGAATGGACTCTCCATTCGGATTTCAAAACGTGTGGTTCCAAATTGGCAAAATCGTAAGTaGTTATCAGCTTTTACTGTT | + |
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Preference number: 4 (lower is better) Translates to: LNPENGLSIRISKRVVPNWQNRK*LSAFTV Trigger: AACAGTAAAAGCTGATAAGCACTTACGATTTTGCCA...ATTTGGAACCACACGTTTTGAAATCCGAATGGAGAGTCCATTCTCTGGATTGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR GCA 90 bp | CACTTTCAATTAGATACAGCTTTGTATATTGTACTCTCAATAGCCAGCAAAGGAATTTATCCAACATCTTaGCACCTATTGTCTGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: HFQLDTALYIVLSIASKGIYPTS*HLLSAL Trigger: GAGGGCAGACAATAGGTGGCAAGATGTTGGATAAAT...TCCTTTGCTGGCTATTGAGAGTACAATATACAAAGCTGTATCTAATTGAAAGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR GCA 90 bp | AATAAATTTATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGACCAAGTCAATTTTATTaGCCACTAAAGCAACCAGGG | + |
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Preference number: 4 (lower is better) Translates to: NKFIYLRKPSAQQVQCDRPSQFY*PLKQPG Trigger: CCCTGGTTGCTTTAGTGGGCAATAAAATTGACTTGG...TCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAATAAATTTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| 3UTR CAA 72 bp | CAGCCTCATTTGAAGCACTTTCAATTAGATACAGCTTaGTATATTGTACTCTCAATAGCCAGCAAAGGAACA | + |
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Preference number: 4 (lower is better) Translates to: QPHLKHFQLDTA*YIVLSIASKGT Trigger: TGTTCCTTTGCTGGCTATTGAGAGTACAATATACAAAGCTGTATCTAATTGAAAGTGCTTCAAATGAGGCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR CAA 90 bp | CACGTTCCTAGGCAGCTGGGGCCCAATTCAGGGGAAGAGCAGCCAGAACTATCAAGCAGAGCTGGGGTGTaGGTTATCTTCTTCCGGGTA | + |
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Preference number: 5 (lower is better) Translates to: HVPRQLGPNSGEEQPELSSRAGV*VIFFRV Trigger: TACCCGGAAGAAGATAACCAACACCCCAGCTCTGCT...TGATAGTTCTGGCTGCTCTTCCCCTGAATTGGGCCCCAGCTGCCTAGGAACGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000201422.4 |
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| CDS-3UTR CAA 90 bp | CAGTGTGATCGATCCCCAATGATCCAAGGAGATCATGACTCATCTGGAAGCACTACATCTTGCCACCTATaGTCTGCCCTCCTATATCCC | + |
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Preference number: 5 (lower is better) Translates to: QCDRSPMIQGDHDSSGSTTSCHL*SALLYP Trigger: GGGATATAGGAGGGCAGACAATAGGTGGCAAGATGT...AGTGCTTCCAGATGAGTCATGATCTCCTTGGATCATTGGGGATCGATCACACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR CAA 90 bp | ATCCAGAGAATGGACTCTCCATTCGGATTTCAAAACGTGTGGTTCCAAATCGCAACATCTTGCCACCTATaGTCTGCCCTCCTATATCCC | + |
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Preference number: 5 (lower is better) Translates to: IQRMDSPFGFQNVWFQIATSCHL*SALLYP Trigger: GGGATATAGGAGGGCAGACAATAGGTGGCAAGATGT...TGCGATTTGGAACCACACGTTTTGAAATCCGAATGGAGAGTCCATTCTCTGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR CAA 90 bp | TTTATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGATCCCCAACATCTTGCCACCTATaGTCTGCCCTCCTATATCCC | + |
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Preference number: 5 (lower is better) Translates to: FIYLRKPSAQQVQCDRSPTSCHL*SALLYP Trigger: GGGATATAGGAGGGCAGACAATAGGTGGCAAGATGT...TGGGGATCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS-3UTR CAA 90 bp | TTTGTATATTGTACTCTCAATAGCCAGCAAAGGAACACCTTCTTGAGAGGCTTTTCTTCTTCCGGGTACTaGACTATTTCTGCCCTGACA | + |
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Preference number: 5 (lower is better) Translates to: FVYCTLNSQQRNTFLRGFSSSGY*TISALT Trigger: TGTCAGGGCAGAAATAGTCAAGTACCCGGAAGAAGA...AAAGCCTCTCAAGAAGGTGTTCCTTTGCTGGCTATTGAGAGTACAATATACAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201422.4 |
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| CDS-3UTR CAA 90 bp | TTTGTATATTGTACTCTCAATAGCCAGCAAAGGAACACCTTCTTGAGAGGCTTTTATTTATCCAACATCTaGCCACCTATTGTCTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: FVYCTLNSQQRNTFLRGFYLSNI*PPIVCP Trigger: AGGGCAGACAATAGGTGGCAAGATGTTGGATAAATA...AAAGCCTCTCAAGAAGGTGTTCCTTTGCTGGCTATTGAGAGTACAATATACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 |
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| CDS-3UTR CAA 90 bp | AATAAATTTATTTATCTGAGAAAACCATCTGCACAACAGGTCCAGTGTGATCGATATTTATCCAACATCTaGCCACCTATTGTCTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: NKFIYLRKPSAQQVQCDRYLSNI*PPIVCP Trigger: AGGGCAGACAATAGGTGGCAAGATGTTGGATAAATA...TCGATCACACTGGACCTGTTGTGCAGATGGTTTTCTCAGATAAATAAATTTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031011.12 ENSMUST00000201422.4 ENSMUST00000202913.2 |
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| CDS CAA 72 bp | GCAGAGCTGGGGTGTTGGTTATCTTCTTCCGGGTACTaGACTATTTCTGCCCTGACAATACGCTGTGACTGT | + |
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Preference number: 6 (lower is better) Translates to: AELGCWLSSSGY*TISALTIRCDC Trigger: ACAGTCACAGCGTATTGTCAGGGCAGAAATAGTCAAGTACCCGGAAGAAGATAACCAACACCCCAGCTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201422.4 |
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